| chr1 |
14604 |
. |
A |
G |
. |
PASS |
0.1210000 |
0.1758000 |
0.0893000 |
0.1610000 |
0.2096000 |
0.1476000 |
37.0 |
42.38 |
10 |
271.59 |
0.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
14610 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.38 |
11 |
268.58 |
0.00 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
14653 |
rs375086259 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.71 |
31 |
876.71 |
13.17 |
77.42 |
0 |
77.42 |
0/1 |
| chr1 |
14673 |
rs369473859 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.57 |
52 |
99.26 |
73.08 |
13.46 |
0 |
13.46 |
0/1 |
| chr1 |
14677 |
rs201327123 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
53.94 |
66 |
1000.00 |
12.12 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
14699 |
rs372910670 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.58 |
89 |
196.73 |
68.73 |
13.48 |
0 |
13.48 |
0/1 |
| chr1 |
14815 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.23 |
122 |
143.33 |
9.33 |
10.66 |
0 |
10.66 |
0/1 |
| chr1 |
14907 |
rs79585140 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.23 |
60.66 |
97 |
1000.00 |
3.49 |
96.91 |
0 |
96.91 |
1/1 |
| chr1 |
14930 |
rs75454623 |
A |
G |
. |
PASS |
0.4811000 |
0.5231000 |
0.4137000 |
0.5209000 |
0.4857000 |
0.4822000 |
36.6 |
60.97 |
122 |
1000.00 |
0.80 |
97.54 |
0 |
97.54 |
1/1 |
| chr1 |
15118 |
rs71252250 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.75 |
11 |
268.58 |
0.00 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
15820 |
rs200482301 |
G |
T |
. |
PASS |
0.4849000 |
0.2939000 |
0.6052000 |
0.2714000 |
0.3354000 |
0.4105000 |
37.0 |
64.25 |
72 |
80.83 |
52.78 |
11.11 |
0 |
11.11 |
0/1 |
| chr1 |
15903 |
. |
G |
GC |
. |
PASS |
0.0431000 |
0.4150000 |
0.8681000 |
0.4652000 |
0.5327000 |
0.4411000 |
37.0 |
59.73 |
11 |
408.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
15906 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.73 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16378 |
rs148220436 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
37.11 |
11 |
310.36 |
0.00 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
16495 |
rs141130360 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
28.56 |
50 |
528.72 |
0.89 |
36.00 |
0 |
36.00 |
0/1 |
| chr1 |
16534 |
rs201459529 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
29.31 |
62 |
854.94 |
0.50 |
41.94 |
0 |
41.94 |
0/1 |
| chr1 |
16571 |
rs199676946 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
32.02 |
120 |
1000.00 |
13.89 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
16949 |
rs199745162 |
A |
C |
. |
PASS |
0.0227000 |
0.0144000 |
0.0000000 |
0.0159000 |
0.0143000 |
0.0139780 |
37.0 |
46.89 |
37 |
603.88 |
5.11 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
16957 |
rs200658479 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.78 |
37 |
227.95 |
10.81 |
24.32 |
0 |
24.32 |
0/1 |
| chr1 |
17006 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.29 |
35 |
154.57 |
17.14 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
17020 |
rs199740902 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.57 |
48.0 |
28 |
151.62 |
28.57 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
17379 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
38.0 |
28 |
133.87 |
14.29 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
17385 |
rs201535981 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.25 |
28 |
217.42 |
14.29 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
17407 |
rs372841554 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
54.71 |
28 |
163.64 |
7.14 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
17614 |
rs201057270 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.0 |
20 |
74.41 |
10.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
252639 |
rs200683317 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.67 |
19 |
160.96 |
0.00 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
565419 |
rs55668158 |
C |
G |
. |
PASS |
0.0000000 |
0.0115000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0021965 |
37.0 |
69.13 |
35 |
484.60 |
1.90 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
808922 |
rs6594027 |
G |
A |
. |
PASS |
0.9554000 |
0.9942000 |
0.9841000 |
1.0000000 |
0.9918000 |
0.9826000 |
36.72 |
68.32 |
130 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
808928 |
rs11240780 |
C |
T |
. |
PASS |
0.1172000 |
0.6527000 |
0.4157000 |
0.7734000 |
0.4703000 |
0.4523000 |
36.09 |
68.32 |
132 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
809319 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.31 |
117 |
283.69 |
42.84 |
13.68 |
0 |
13.68 |
0/1 |
| chr1 |
809345 |
. |
CCA |
CAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.8 |
101 |
56.38 |
31.29 |
9.90 |
0 |
9.90 |
0/1 |
| chr1 |
866511 |
. |
C |
CCCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.73 |
70.0 |
59 |
1000.00 |
111.86 |
20.34 |
0 |
88.14 |
0/1 |
| chr1 |
866511 |
rs60722469 |
C |
CCCCT |
. |
PASS |
0.0416000 |
0.1902000 |
0.1319000 |
0.2376000 |
0.1912000 |
0.1490000 |
36.15 |
70.0 |
59 |
1000.00 |
76.71 |
59.32 |
0 |
88.14 |
0/1 |
| chr1 |
866523 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.2 |
70.0 |
30 |
62.07 |
166.67 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
871334 |
rs4072383 |
G |
T |
. |
PASS |
0.1982000 |
0.5865000 |
0.4921000 |
0.7097000 |
0.6278000 |
0.4978000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
874950 |
rs79212057,rs6143081 |
T |
TCCCTGGAGGACC |
. |
PASS |
0.7194000 |
0.7061000 |
0.7956000 |
0.6720000 |
0.7526000 |
0.7298000 |
36.31 |
70.0 |
42 |
394.31 |
19.05 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
876499 |
rs4372192 |
A |
G |
. |
PASS |
0.8737000 |
0.9207000 |
0.9206000 |
0.9503000 |
0.9151000 |
0.9131000 |
36.17 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
877715 |
rs6605066 |
C |
G |
. |
PASS |
0.7935000 |
0.9092000 |
0.9256000 |
0.9443000 |
0.9039000 |
0.8880000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
877831 |
rs6672356 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.46 |
70.0 |
112 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
881627 |
rs2272757 |
G |
A |
. |
PASS |
0.0643000 |
0.4380000 |
0.6240000 |
0.6332000 |
0.5706000 |
0.4419000 |
36.81 |
69.95 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
883625 |
rs4970378 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.78 |
69.91 |
56 |
1000.00 |
2.14 |
98.21 |
0 |
98.21 |
1/1 |
| chr1 |
883899 |
rs72631890 |
T |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.7 |
69.83 |
137 |
1000.00 |
0.05 |
59.12 |
0 |
59.12 |
0/1 |
| chr1 |
884091 |
rs60085302 |
C |
CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.83 |
70.0 |
11 |
162.45 |
36.36 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
887560 |
rs3748595 |
A |
C |
. |
PASS |
0.8290000 |
0.9092000 |
0.9206000 |
0.9483000 |
0.9172000 |
0.8998000 |
36.56 |
69.26 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
887801 |
rs3828047 |
A |
G |
. |
PASS |
0.9062000 |
0.9193000 |
0.9206000 |
0.9523000 |
0.9172000 |
0.9223000 |
36.52 |
69.87 |
151 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
888639 |
rs3748596 |
T |
C |
. |
PASS |
0.9070000 |
0.9193000 |
0.9206000 |
0.9533000 |
0.9172000 |
0.9227000 |
36.84 |
69.88 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
888659 |
rs3748597 |
T |
C |
. |
PASS |
0.9070000 |
0.9193000 |
0.9206000 |
0.9533000 |
0.9172000 |
0.9227000 |
36.74 |
69.87 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
889157 |
rs369883627 |
CGA |
CCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.51 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
894573 |
rs13303010 |
G |
A |
. |
PASS |
0.1634000 |
0.6974000 |
0.7083000 |
0.9016000 |
0.8753000 |
0.6344000 |
36.71 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
896271 |
rs112905931 |
C |
T |
. |
PASS |
0.0363000 |
0.4971000 |
0.3611000 |
0.6262000 |
0.5164000 |
0.3778000 |
35.59 |
70.0 |
17 |
650.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
897325 |
rs4970441 |
G |
C |
. |
PASS |
0.6959000 |
0.8847000 |
0.9157000 |
0.9433000 |
0.9172000 |
0.8592000 |
36.33 |
70.0 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
897460 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.0 |
70.0 |
31 |
84.68 |
154.84 |
19.35 |
0 |
19.35 |
0/1 |
| chr1 |
897465 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
70.0 |
30 |
69.94 |
166.67 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
898323 |
rs6605071 |
T |
C |
. |
PASS |
0.9266000 |
0.9078000 |
0.9206000 |
0.9493000 |
0.9243000 |
0.9269000 |
36.51 |
69.73 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
899928 |
rs6677386 |
G |
C |
. |
PASS |
0.5809000 |
0.8862000 |
0.9196000 |
0.9414000 |
0.9141000 |
0.8289000 |
36.1 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
899936 |
rs71490529 |
GGG |
GTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.66 |
69.72 |
73 |
1000.00 |
1.60 |
95.89 |
0 |
100.00 |
1/1 |
| chr1 |
899942 |
rs71509448 |
G |
A |
. |
PASS |
0.5106000 |
0.8646000 |
0.9216000 |
0.9155000 |
0.9141000 |
0.8025000 |
35.99 |
69.72 |
73 |
1000.00 |
2.93 |
97.26 |
0 |
97.26 |
1/1 |
| chr1 |
899989 |
rs6669071 |
A |
C |
. |
PASS |
0.6293000 |
0.8890000 |
0.9206000 |
0.9225000 |
0.9141000 |
0.8385000 |
35.5 |
70.0 |
16 |
604.67 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
900001 |
rs28754834 |
G |
A |
. |
PASS |
0.5280000 |
0.8761000 |
0.9127000 |
0.9423000 |
0.8967000 |
0.8089000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
900284 |
rs71490530 |
GCA |
GTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
900298 |
rs71628926 |
C |
G |
. |
PASS |
0.0045000 |
0.0173000 |
0.0000000 |
0.0308000 |
0.0061000 |
0.0109820 |
35.4 |
70.0 |
26 |
487.66 |
5.13 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
900717 |
rs374537094,rs142545439 |
CTTAT |
C |
. |
PASS |
0.0340000 |
0.4942000 |
0.3512000 |
0.6233000 |
0.4980000 |
0.3706000 |
34.18 |
70.0 |
11 |
383.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
900730 |
rs3935066 |
G |
A |
. |
PASS |
0.2005000 |
0.7061000 |
0.7083000 |
0.9095000 |
0.8773000 |
0.6474000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
908193 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.2 |
70.0 |
30 |
57.92 |
166.67 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
909419 |
rs28548431 |
C |
T |
. |
PASS |
0.0598000 |
0.0778000 |
0.0962000 |
0.1839000 |
0.1452000 |
0.1112000 |
36.37 |
70.0 |
80 |
1000.00 |
7.50 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
909555 |
rs2340594 |
A |
G |
. |
PASS |
0.7632000 |
0.9625000 |
0.9623000 |
0.9831000 |
0.8753000 |
0.8970000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
909768 |
rs2340593 |
A |
G |
. |
PASS |
0.9985000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9996000 |
36.67 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
911595 |
rs7417106 |
A |
G |
. |
PASS |
0.4092000 |
0.8012000 |
0.9246000 |
0.7873000 |
0.7526000 |
0.7103000 |
36.44 |
70.0 |
108 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
912049 |
rs9803103 |
T |
C |
. |
PASS |
0.2171000 |
0.6052000 |
0.7123000 |
0.5895000 |
0.5920000 |
0.5186000 |
37.0 |
70.0 |
14 |
301.32 |
23.81 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
914192 |
rs2340595 |
G |
C |
. |
PASS |
0.8275000 |
0.9452000 |
0.9990000 |
0.9592000 |
0.9847000 |
0.9355000 |
36.86 |
69.77 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
914333 |
rs13302979 |
C |
G |
. |
PASS |
0.2436000 |
0.6542000 |
0.8056000 |
0.6034000 |
0.6043000 |
0.5563000 |
36.04 |
70.0 |
42 |
857.21 |
0.95 |
59.52 |
0 |
59.52 |
0/1 |
| chr1 |
914414 |
. |
CGAA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
106 |
1000.00 |
3.84 |
51.89 |
0 |
51.89 |
0/1 |
| chr1 |
914852 |
rs13303368 |
G |
C |
. |
PASS |
0.1793000 |
0.6138000 |
0.7123000 |
0.5994000 |
0.5961000 |
0.5126000 |
36.4 |
69.0 |
46 |
648.32 |
12.61 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
914876 |
rs13302983 |
T |
C |
. |
PASS |
0.9418000 |
0.9539000 |
0.9990000 |
0.9592000 |
0.9847000 |
0.9669000 |
37.0 |
69.55 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
914940 |
rs13303033 |
T |
C |
. |
PASS |
0.1770000 |
0.6095000 |
0.7123000 |
0.5895000 |
0.5971000 |
0.5096000 |
37.0 |
70.0 |
36 |
694.58 |
14.44 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
915227 |
rs13303355 |
A |
G |
. |
PASS |
0.7640000 |
0.9409000 |
0.9990000 |
0.9592000 |
0.9847000 |
0.9181000 |
36.74 |
69.86 |
140 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
916549 |
rs6660139 |
A |
G |
. |
PASS |
0.5998000 |
0.7810000 |
0.8800000 |
0.7584000 |
0.8323000 |
0.7586000 |
35.5 |
70.0 |
64 |
1000.00 |
15.62 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
916590 |
rs28566954 |
G |
A |
. |
PASS |
0.0166000 |
0.0937000 |
0.0129000 |
0.1541000 |
0.0910000 |
0.0687000 |
35.8 |
70.0 |
38 |
664.55 |
6.32 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
935222 |
rs2298214 |
C |
A |
. |
PASS |
0.0356000 |
0.6268000 |
0.7718000 |
0.5895000 |
0.6339000 |
0.4938000 |
36.02 |
69.59 |
92 |
1000.00 |
9.41 |
53.26 |
0 |
53.26 |
0/1 |
| chr1 |
943468 |
rs3121567 |
T |
C |
. |
PASS |
0.6815000 |
0.9352000 |
0.9990000 |
0.9602000 |
0.9744000 |
0.8938000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
943687 |
rs2465140 |
G |
C |
. |
PASS |
0.2958000 |
0.2637000 |
0.1637000 |
0.3907000 |
0.3589000 |
0.2961000 |
37.0 |
70.0 |
11 |
97.35 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
948846 |
rs3841266 |
T |
TA |
. |
PASS |
0.5575000 |
0.9366000 |
0.9464000 |
0.9791000 |
0.9744000 |
0.8544000 |
36.37 |
69.47 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
948870 |
rs4615788 |
C |
G |
. |
PASS |
0.7194000 |
0.9308000 |
0.9990000 |
0.9573000 |
0.9765000 |
0.9030000 |
36.76 |
69.59 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
948921 |
rs15842 |
T |
C |
. |
PASS |
0.7201000 |
0.9308000 |
0.9990000 |
0.9573000 |
0.9765000 |
0.9032000 |
37.0 |
69.71 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
948929 |
. |
GGCCCACA |
G |
. |
PASS |
0.0061000 |
0.0029000 |
0.0000000 |
0.0020000 |
0.0020000 |
0.0021965 |
35.35 |
70.0 |
66 |
672.97 |
10.41 |
34.85 |
0 |
34.85 |
0/1 |
| chr1 |
949235 |
rs2465124 |
G |
A |
. |
PASS |
0.7073000 |
0.9308000 |
0.9990000 |
0.9573000 |
0.9765000 |
0.8998000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
949608 |
rs1921 |
G |
A |
. |
PASS |
0.4387000 |
0.2709000 |
0.1845000 |
0.3926000 |
0.3558000 |
0.3389000 |
37.0 |
70.0 |
62 |
866.95 |
3.23 |
41.94 |
0 |
41.94 |
0/1 |
| chr1 |
949654 |
rs8997 |
A |
G |
. |
PASS |
0.5083000 |
0.9179000 |
0.9266000 |
0.9453000 |
0.9622000 |
0.8257000 |
36.75 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
949925 |
rs2799070 |
C |
T |
. |
PASS |
0.6286000 |
0.9265000 |
0.9762000 |
0.9563000 |
0.9724000 |
0.8728000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
957967 |
rs141489152,rs6143083 |
T |
TTGTAGTCTGACCTGTGGTCTGAC |
. |
PASS |
0.6876000 |
0.9683000 |
0.9206000 |
0.9930000 |
0.9836000 |
0.8926000 |
36.62 |
70.0 |
16 |
455.55 |
12.50 |
75.00 |
0 |
87.50 |
0/1 |
| chr1 |
976481 |
. |
CGGAGCGGGGCG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
253.00 |
0.00 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
976514 |
rs79290478 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
25 |
559.46 |
2.50 |
64.00 |
0 |
68.00 |
0/1 |
| chr1 |
977330 |
rs2799066 |
T |
C |
. |
PASS |
0.6899000 |
0.9207000 |
0.9990000 |
0.9245000 |
0.9663000 |
0.8852000 |
36.57 |
70.0 |
82 |
1000.00 |
0.61 |
68.29 |
0 |
68.29 |
0/1 |
| chr1 |
977570 |
rs2710876 |
G |
A |
. |
PASS |
0.3896000 |
0.8963000 |
0.9722000 |
0.9175000 |
0.9581000 |
0.7941000 |
37.0 |
70.0 |
70 |
1000.00 |
17.14 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
978603 |
rs35881187 |
CCT |
C |
. |
PASS |
0.0348000 |
0.6412000 |
0.8036000 |
0.5487000 |
0.5593000 |
0.4792000 |
35.72 |
70.0 |
64 |
826.38 |
11.53 |
45.31 |
0 |
45.31 |
0/1 |
| chr1 |
980460 |
rs3128097 |
G |
A |
. |
PASS |
0.7738000 |
0.9323000 |
0.9990000 |
0.9334000 |
0.9724000 |
0.9119000 |
37.0 |
70.0 |
33 |
452.98 |
31.17 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
981087 |
rs3128098 |
A |
G |
. |
PASS |
0.6225000 |
0.9179000 |
0.9990000 |
0.9304000 |
0.9724000 |
0.8694000 |
36.12 |
70.0 |
76 |
1000.00 |
8.09 |
53.95 |
0 |
53.95 |
0/1 |
| chr1 |
981931 |
rs2465128 |
A |
G |
. |
PASS |
0.4554000 |
0.8905000 |
0.9633000 |
0.9125000 |
0.9059000 |
0.7977000 |
37.0 |
70.0 |
27 |
262.20 |
7.41 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
982444 |
rs3128099 |
A |
G |
. |
PASS |
0.4894000 |
0.9049000 |
0.9722000 |
0.9185000 |
0.9581000 |
0.8219000 |
37.0 |
70.0 |
37 |
482.71 |
21.98 |
40.54 |
0 |
40.54 |
0/1 |
| chr1 |
982462 |
rs3128100 |
T |
C |
. |
PASS |
0.9380000 |
0.9841000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9808000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
982941 |
rs3128102 |
T |
C |
. |
PASS |
0.4107000 |
0.8991000 |
0.9722000 |
0.9175000 |
0.9571000 |
0.7999000 |
37.0 |
70.0 |
65 |
941.45 |
5.60 |
43.08 |
0 |
43.08 |
0/1 |
| chr1 |
982994 |
rs10267 |
T |
C |
. |
PASS |
0.5151000 |
0.9035000 |
0.9990000 |
0.9205000 |
0.9663000 |
0.8359000 |
36.55 |
70.0 |
117 |
1000.00 |
2.39 |
45.30 |
0 |
45.30 |
0/1 |
| chr1 |
984147 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
97.35 |
109.09 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
984171 |
rs140904842 |
CAG |
C |
. |
PASS |
0.7602000 |
0.9769000 |
0.9891000 |
0.9742000 |
0.9714000 |
0.9205000 |
37.0 |
70.0 |
11 |
130.70 |
87.27 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
984302 |
rs9442391 |
T |
C |
. |
PASS |
0.2405000 |
0.6614000 |
0.8294000 |
0.5636000 |
0.5654000 |
0.5457000 |
35.98 |
70.0 |
79 |
1000.00 |
2.59 |
59.49 |
0 |
59.49 |
0/1 |
| chr1 |
985266 |
rs2275813 |
C |
T |
. |
PASS |
0.1021000 |
0.6398000 |
0.8155000 |
0.5457000 |
0.5419000 |
0.4952000 |
36.32 |
70.0 |
113 |
1000.00 |
5.14 |
46.90 |
0 |
46.90 |
0/1 |
| chr1 |
985446 |
rs2275812 |
G |
T |
. |
PASS |
0.0514000 |
0.4625000 |
0.3145000 |
0.4911000 |
0.4908000 |
0.3355000 |
35.17 |
69.66 |
116 |
1000.00 |
2.51 |
50.86 |
0 |
50.86 |
0/1 |
| chr1 |
985449 |
rs2799067 |
G |
A |
. |
PASS |
0.3585000 |
0.5692000 |
0.5407000 |
0.6183000 |
0.6094000 |
0.5256000 |
35.16 |
69.53 |
94 |
1000.00 |
4.36 |
90.43 |
0 |
90.43 |
0/1 |
| chr1 |
986443 |
rs2710887 |
C |
T |
. |
PASS |
0.3896000 |
0.8876000 |
0.9931000 |
0.9135000 |
0.9182000 |
0.7885000 |
35.7 |
69.46 |
79 |
1000.00 |
9.37 |
46.84 |
0 |
46.84 |
0/1 |
| chr1 |
987200 |
rs9803031 |
C |
T |
. |
PASS |
0.4017000 |
0.8876000 |
0.9931000 |
0.9145000 |
0.9018000 |
0.7887000 |
37.0 |
70.0 |
66 |
1000.00 |
5.05 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
988932 |
rs2710871 |
G |
C |
. |
PASS |
0.3835000 |
0.8775000 |
0.9931000 |
0.8708000 |
0.9100000 |
0.7754000 |
36.71 |
70.0 |
74 |
1000.00 |
9.49 |
55.41 |
0 |
55.41 |
0/1 |
| chr1 |
990280 |
rs4275402 |
C |
T |
. |
PASS |
0.2617000 |
0.7262000 |
0.8214000 |
0.6779000 |
0.5838000 |
0.5853000 |
36.14 |
70.0 |
112 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1007203 |
rs4633229 |
A |
G |
. |
PASS |
0.8797000 |
0.8112000 |
0.9196000 |
0.7883000 |
0.7843000 |
0.8413000 |
35.11 |
70.0 |
37 |
613.77 |
1.71 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
1007432 |
rs4333796 |
G |
A |
. |
PASS |
0.2307000 |
0.6643000 |
0.7917000 |
0.5616000 |
0.5481000 |
0.5321000 |
35.52 |
69.69 |
111 |
1000.00 |
7.10 |
58.56 |
0 |
58.56 |
0/1 |
| chr1 |
1019180 |
rs9442396 |
T |
C |
. |
PASS |
0.4584000 |
0.6830000 |
0.7937000 |
0.5666000 |
0.5706000 |
0.6006000 |
37.0 |
70.0 |
10 |
146.28 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
1021415 |
rs3737728 |
A |
G |
. |
PASS |
0.8109000 |
0.8055000 |
0.9177000 |
0.7386000 |
0.7883000 |
0.8127000 |
35.8 |
70.0 |
33 |
679.59 |
1.21 |
60.61 |
0 |
60.61 |
0/1 |
| chr1 |
1026801 |
rs4562563 |
T |
A |
. |
PASS |
0.3411000 |
0.7277000 |
0.8879000 |
0.5944000 |
0.7045000 |
0.6266000 |
36.59 |
70.0 |
42 |
1000.00 |
0.82 |
69.05 |
0 |
69.05 |
0/1 |
| chr1 |
1158631 |
rs6603781 |
A |
G |
. |
PASS |
0.9985000 |
0.9294000 |
1.0000000 |
0.8608000 |
0.9560000 |
0.9533000 |
36.39 |
69.83 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1181802 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.59 |
70.0 |
57 |
1000.00 |
0.52 |
59.65 |
0 |
59.65 |
0/1 |
| chr1 |
1222690 |
rs115316182 |
C |
T |
. |
PASS |
0.0053000 |
0.0317000 |
0.0010000 |
0.0586000 |
0.0153000 |
0.0208000 |
36.54 |
70.0 |
63 |
851.93 |
12.45 |
41.27 |
0 |
41.27 |
0/1 |
| chr1 |
1229111 |
. |
A |
ACGCCCCTGCCCTGGAGGCCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
70.0 |
78 |
1000.00 |
0.56 |
93.59 |
0 |
97.44 |
1/1 |
| chr1 |
1229680 |
rs2477781 |
G |
T |
. |
PASS |
1.0000000 |
0.9813000 |
1.0000000 |
0.9543000 |
0.9959000 |
0.9874000 |
36.54 |
70.0 |
43 |
907.97 |
5.55 |
60.47 |
0 |
60.47 |
0/1 |
| chr1 |
1239339 |
rs11260584 |
T |
G |
. |
PASS |
0.3064000 |
0.8602000 |
0.8343000 |
0.9245000 |
0.8476000 |
0.7192000 |
37.0 |
66.92 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1246004 |
rs2296474 |
A |
G |
. |
PASS |
0.9803000 |
0.9813000 |
0.9127000 |
0.9672000 |
0.9172000 |
0.9519000 |
36.77 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1246256 |
rs142589758 |
CGGCTCTGGGTCACAGGT |
C |
. |
PASS |
0.0098000 |
0.0303000 |
0.0010000 |
0.0656000 |
0.0204000 |
0.0242000 |
35.42 |
69.4 |
154 |
1000.00 |
1.57 |
55.84 |
0 |
55.84 |
0/1 |
| chr1 |
1247494 |
rs12103 |
T |
C |
. |
PASS |
0.0923000 |
0.4424000 |
0.0188000 |
0.8121000 |
0.3415000 |
0.3193000 |
37.0 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1247578 |
. |
T |
TGGGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
19 |
630.05 |
0.00 |
15.79 |
0 |
94.74 |
0/1 |
| chr1 |
1247578 |
rs144812141 |
T |
TGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.86 |
70.0 |
19 |
630.05 |
0.00 |
36.84 |
0 |
94.74 |
0/1 |
| chr1 |
1249187 |
rs12142199 |
G |
A |
. |
PASS |
0.0651000 |
0.4395000 |
0.0188000 |
0.8052000 |
0.3405000 |
0.3101000 |
36.31 |
70.0 |
121 |
1000.00 |
0.72 |
99.17 |
0 |
100.00 |
1/1 |
| chr1 |
1254841 |
rs10907179 |
C |
G |
. |
PASS |
0.3018000 |
0.8545000 |
0.8353000 |
0.9205000 |
0.8323000 |
0.7137000 |
36.63 |
69.79 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1257282 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
40 |
177.15 |
160.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
1257289 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
70.0 |
48 |
103.45 |
150.00 |
14.58 |
0 |
14.58 |
0/1 |
| chr1 |
1262591 |
rs2296472 |
C |
T |
. |
PASS |
0.3253000 |
0.8573000 |
0.8323000 |
0.9195000 |
0.8344000 |
0.7198000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1262966 |
rs307349 |
C |
T |
. |
PASS |
0.4834000 |
0.8732000 |
0.8323000 |
0.9155000 |
0.8323000 |
0.7626000 |
35.75 |
69.43 |
106 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1263144 |
rs307350 |
G |
A |
. |
PASS |
0.7935000 |
0.8991000 |
0.8313000 |
0.9235000 |
0.8344000 |
0.8498000 |
36.83 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1268847 |
rs307378 |
T |
G |
. |
PASS |
0.9803000 |
0.9813000 |
0.9127000 |
0.9662000 |
0.9172000 |
0.9517000 |
36.78 |
70.0 |
108 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1269554 |
rs307377 |
T |
C |
. |
PASS |
0.9803000 |
0.9813000 |
0.9137000 |
0.9662000 |
0.9172000 |
0.9519000 |
36.38 |
70.0 |
155 |
1000.00 |
0.04 |
98.71 |
0 |
100.00 |
1/1 |
| chr1 |
1273278 |
rs307370 |
A |
G |
. |
PASS |
0.7088000 |
0.6585000 |
0.6230000 |
0.8350000 |
0.5777000 |
0.6843000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1273622 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.43 |
70.0 |
50 |
361.64 |
136.00 |
28.00 |
0 |
28.00 |
0/1 |
| chr1 |
1275291 |
rs11582808 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
70.0 |
19 |
357.80 |
19.14 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
1276973 |
rs145370195 |
G |
GACAC |
. |
PASS |
0.7239000 |
0.7983000 |
0.7440000 |
0.8091000 |
0.6810000 |
0.7470000 |
36.67 |
70.0 |
76 |
1000.00 |
6.63 |
93.42 |
0 |
94.74 |
1/1 |
| chr1 |
1277533 |
rs307362 |
T |
C |
. |
PASS |
1.0000000 |
0.9986000 |
0.9990000 |
0.9940000 |
0.9980000 |
0.9980000 |
36.25 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1284490 |
rs150789461 |
G |
A |
. |
PASS |
0.4902000 |
0.8746000 |
0.8234000 |
0.9155000 |
0.8333000 |
0.7630000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1288583 |
rs3845295 |
C |
G |
. |
PASS |
0.7322000 |
0.9510000 |
0.8423000 |
0.9254000 |
0.8354000 |
0.8436000 |
37.0 |
70.0 |
23 |
921.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1288823 |
rs2296471 |
A |
G |
. |
PASS |
0.4766000 |
0.8718000 |
0.8333000 |
0.9205000 |
0.8272000 |
0.7608000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1289367 |
rs140777846 |
CTG |
C |
. |
PASS |
0.6876000 |
0.8934000 |
0.8333000 |
0.9205000 |
0.8333000 |
0.8207000 |
36.59 |
69.21 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1289911 |
rs4970365 |
G |
A |
. |
PASS |
0.7148000 |
0.8934000 |
0.8333000 |
0.9215000 |
0.8354000 |
0.8285000 |
36.62 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1290276 |
rs75904949 |
C |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
69.68 |
110 |
1000.00 |
3.41 |
57.27 |
0 |
57.27 |
0/1 |
| chr1 |
1291159 |
rs201260508 |
GA |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
32.0 |
68.95 |
19 |
653.50 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1293764 |
rs34841888 |
G |
C |
. |
PASS |
0.0741000 |
0.4510000 |
0.0208000 |
0.8181000 |
0.3384000 |
0.3167000 |
35.59 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1296691 |
rs2765025 |
C |
G |
. |
PASS |
0.9803000 |
0.9813000 |
0.9127000 |
0.9662000 |
0.9162000 |
0.9515000 |
36.8 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1310074 |
rs2765035 |
C |
G |
. |
PASS |
0.5825000 |
0.9222000 |
0.9038000 |
0.9364000 |
0.9090000 |
0.8291000 |
36.7 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1323078 |
rs12729599 |
A |
G |
. |
PASS |
0.0711000 |
0.4481000 |
0.0208000 |
0.8141000 |
0.3405000 |
0.3151000 |
37.0 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1323143 |
rs35654872 |
CCT |
C |
. |
PASS |
0.1679000 |
0.4640000 |
0.0208000 |
0.8151000 |
0.3425000 |
0.3435000 |
36.26 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1342612 |
rs2275915 |
G |
C |
. |
PASS |
0.2383000 |
0.4150000 |
0.8710000 |
0.1700000 |
0.5143000 |
0.4303000 |
37.0 |
70.0 |
32 |
577.15 |
19.12 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
1387667 |
rs1781144 |
C |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.79 |
69.29 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1417696 |
rs819970 |
C |
G |
. |
PASS |
0.9826000 |
0.8386000 |
0.9990000 |
0.6809000 |
0.9121000 |
0.8916000 |
36.29 |
59.44 |
182 |
1000.00 |
5.00 |
36.26 |
0 |
37.36 |
0/1 |
| chr1 |
1420637 |
rs35871802 |
C |
T |
. |
PASS |
0.0023000 |
0.0245000 |
0.0020000 |
0.0626000 |
0.0215000 |
0.0212000 |
35.54 |
69.4 |
225 |
1000.00 |
1.67 |
54.67 |
0 |
54.67 |
0/1 |
| chr1 |
1423281 |
rs79849353 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.98 |
123 |
1000.00 |
7.36 |
41.46 |
0 |
41.46 |
0/1 |
| chr1 |
1458073 |
rs3118507 |
A |
G |
. |
PASS |
0.0151000 |
0.1239000 |
0.0030000 |
0.2584000 |
0.0470000 |
0.0829000 |
36.45 |
67.55 |
150 |
1000.00 |
7.38 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
1469546 |
rs3128344 |
G |
A |
. |
PASS |
0.7209000 |
0.8372000 |
0.9931000 |
0.7336000 |
0.9468000 |
0.8385000 |
35.09 |
68.58 |
138 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1509825 |
rs6666293 |
A |
G |
. |
PASS |
0.9274000 |
0.5591000 |
0.8700000 |
0.3241000 |
0.7106000 |
0.7013000 |
37.0 |
70.0 |
68 |
1000.00 |
3.73 |
44.12 |
0 |
44.12 |
0/1 |
| chr1 |
1534614 |
rs11552172 |
T |
C |
. |
PASS |
0.1959000 |
0.3386000 |
0.2847000 |
0.2296000 |
0.3896000 |
0.2782000 |
37.0 |
70.0 |
24 |
396.55 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
1551927 |
rs7418389 |
T |
C |
. |
PASS |
0.5378000 |
0.4813000 |
0.2054000 |
0.7058000 |
0.4366000 |
0.4770000 |
36.59 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1558792 |
rs12755088 |
T |
C |
. |
PASS |
0.7057000 |
0.8674000 |
0.5516000 |
0.9364000 |
0.8599000 |
0.7736000 |
36.68 |
69.89 |
186 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1559466 |
rs28617190 |
G |
A |
. |
PASS |
0.6044000 |
0.2810000 |
0.1438000 |
0.3718000 |
0.1953000 |
0.3403000 |
37.0 |
70.0 |
14 |
301.32 |
7.94 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
1560100 |
rs28441650 |
G |
A |
. |
PASS |
0.0174000 |
0.2017000 |
0.0942000 |
0.3598000 |
0.1421000 |
0.1516000 |
37.0 |
70.0 |
20 |
241.49 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
1562895 |
rs12735861 |
C |
T |
. |
PASS |
0.3661000 |
0.6527000 |
0.5496000 |
0.5984000 |
0.6677000 |
0.5483000 |
35.74 |
69.47 |
78 |
1000.00 |
1.89 |
48.72 |
0 |
48.72 |
0/1 |
| chr1 |
1563789 |
rs74892851 |
C |
A |
. |
PASS |
0.0174000 |
0.2032000 |
0.0933000 |
0.3579000 |
0.1401000 |
0.1508000 |
36.59 |
70.0 |
62 |
976.09 |
4.34 |
46.77 |
0 |
46.77 |
0/1 |
| chr1 |
1564194 |
rs3935032 |
C |
T |
. |
PASS |
0.0174000 |
0.2032000 |
0.0942000 |
0.3579000 |
0.1401000 |
0.1510000 |
35.67 |
70.0 |
84 |
1000.00 |
6.35 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
1564712 |
rs61774907 |
G |
T |
. |
PASS |
0.0287000 |
0.2939000 |
0.2520000 |
0.3638000 |
0.2485000 |
0.2206000 |
35.36 |
69.09 |
55 |
680.75 |
9.09 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
1564952 |
rs112177324 |
TG |
T |
. |
PASS |
0.0182000 |
0.2046000 |
0.0933000 |
0.3588000 |
0.1360000 |
0.1506000 |
36.22 |
70.0 |
114 |
1000.00 |
4.82 |
48.25 |
0 |
48.25 |
0/1 |
| chr1 |
1569318 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
29.0 |
70.0 |
12 |
365.51 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1569322 |
. |
G |
GGGCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
11 |
398.40 |
0.00 |
36.36 |
0 |
100.00 |
0/1 |
| chr1 |
1569322 |
. |
G |
GCGCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
11 |
398.40 |
0.00 |
27.27 |
0 |
100.00 |
0/1 |
| chr1 |
1569365 |
rs145019553 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
95.48 |
0.00 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
1571640 |
rs377058079 |
G |
T |
. |
PASS |
0.0439000 |
0.3228000 |
0.2163000 |
0.4761000 |
0.2495000 |
0.2442000 |
37.0 |
70.0 |
13 |
341.95 |
0.00 |
76.92 |
0 |
76.92 |
0/1 |
| chr1 |
1574019 |
rs9442412 |
A |
G |
. |
PASS |
0.0582000 |
0.3012000 |
0.1954000 |
0.3559000 |
0.2505000 |
0.2169000 |
37.0 |
59.67 |
28 |
384.50 |
19.05 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
1575616 |
rs80012316 |
T |
C |
. |
PASS |
0.8964000 |
0.9265000 |
0.7044000 |
0.9632000 |
0.8558000 |
0.8674000 |
37.0 |
59.41 |
138 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1575836 |
rs72468213 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
60.35 |
97 |
1000.00 |
19.59 |
41.24 |
0 |
41.24 |
0/1 |
| chr1 |
1580738 |
rs149767621 |
T |
A |
. |
PASS |
0.1430000 |
0.4683000 |
0.4097000 |
0.4911000 |
0.4223000 |
0.3662000 |
35.74 |
58.34 |
69 |
1000.00 |
1.37 |
55.07 |
0 |
55.07 |
0/1 |
| chr1 |
1586752 |
rs11486023 |
T |
C |
. |
PASS |
0.8752000 |
0.9236000 |
0.7034000 |
0.9602000 |
0.8681000 |
0.8630000 |
35.8 |
68.95 |
20 |
775.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1588670 |
rs61774958 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
69.62 |
79 |
803.76 |
24.73 |
32.91 |
0 |
32.91 |
0/1 |
| chr1 |
1588717 |
rs61774959 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
69.31 |
88 |
776.67 |
3.50 |
29.55 |
0 |
29.55 |
0/1 |
| chr1 |
1588737 |
rs61776760 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.11 |
90 |
490.27 |
10.88 |
21.11 |
0 |
21.11 |
0/1 |
| chr1 |
1588743 |
rs61776761 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
69.06 |
94 |
336.76 |
4.52 |
17.02 |
0 |
17.02 |
0/1 |
| chr1 |
1594837 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
56.72 |
66.67 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
1594840 |
. |
TA |
TCTCGACGGGGAGGTGGACAAGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
10 |
441.17 |
15.00 |
80.00 |
1 |
100.00 |
0/1 |
| chr1 |
1594840 |
. |
TA |
TCTCGATGGGGAGGTGGACAAGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
10 |
441.17 |
60.00 |
20.00 |
1 |
100.00 |
0/1 |
| chr1 |
1594841 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
1599812 |
rs12729295 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.11 |
139 |
301.03 |
42.29 |
12.95 |
0 |
12.95 |
0/1 |
| chr1 |
1599888 |
rs2072923 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
60.75 |
149 |
664.60 |
25.70 |
18.79 |
0 |
18.79 |
0/1 |
| chr1 |
1599940 |
rs61776767 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.93 |
72 |
1000.00 |
15.11 |
56.94 |
0 |
56.94 |
0/1 |
| chr1 |
1599974 |
rs113499489 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.67 |
58 |
1000.00 |
0.63 |
56.90 |
0 |
56.90 |
0/1 |
| chr1 |
1599981 |
rs72634822 |
C |
T |
. |
PASS |
0.0129000 |
0.1254000 |
0.0972000 |
0.2435000 |
0.1135000 |
0.1114000 |
34.23 |
68.62 |
57 |
302.96 |
6.48 |
22.81 |
0 |
22.81 |
0/1 |
| chr1 |
1601015 |
rs72634825 |
G |
A |
. |
PASS |
0.0129000 |
0.1297000 |
0.0972000 |
0.2515000 |
0.1166000 |
0.1142000 |
37.0 |
70.0 |
42 |
885.37 |
3.43 |
59.52 |
0 |
59.52 |
0/1 |
| chr1 |
1601052 |
rs72634826 |
G |
A |
. |
PASS |
0.0129000 |
0.1311000 |
0.0972000 |
0.2525000 |
0.1166000 |
0.1146000 |
36.73 |
70.0 |
73 |
1000.00 |
6.64 |
61.64 |
0 |
61.64 |
0/1 |
| chr1 |
1632541 |
. |
G |
GGGGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
13 |
457.90 |
0.00 |
15.38 |
0 |
100.00 |
0/1 |
| chr1 |
1632541 |
. |
G |
GGCCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
13 |
457.90 |
0.00 |
30.77 |
0 |
100.00 |
0/1 |
| chr1 |
1632584 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
12 |
86.48 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
1633003 |
. |
C |
CCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
36.73 |
29 |
324.14 |
21.55 |
27.59 |
0 |
37.93 |
0/1 |
| chr1 |
1635004 |
rs874516 |
T |
C |
. |
PASS |
0.9160000 |
0.5014000 |
0.3849000 |
0.5626000 |
0.4632000 |
0.5923000 |
36.81 |
66.81 |
111 |
1000.00 |
0.23 |
55.86 |
0 |
55.86 |
0/1 |
| chr1 |
1635619 |
rs2076329 |
T |
C |
. |
PASS |
0.9395000 |
0.5591000 |
0.4673000 |
0.5924000 |
0.5552000 |
0.6470000 |
35.04 |
69.71 |
118 |
1000.00 |
9.23 |
45.76 |
0 |
46.61 |
0/1 |
| chr1 |
1635749 |
rs55880629 |
C |
A |
. |
PASS |
0.4070000 |
0.4553000 |
0.2520000 |
0.5368000 |
0.3507000 |
0.3976000 |
36.25 |
67.91 |
116 |
926.86 |
7.11 |
27.59 |
0 |
27.59 |
0/1 |
| chr1 |
1636044 |
rs1059822 |
G |
A |
. |
PASS |
0.9433000 |
0.5620000 |
0.4643000 |
0.5924000 |
0.5562000 |
0.6480000 |
36.12 |
65.29 |
111 |
1000.00 |
4.83 |
36.94 |
0 |
36.94 |
0/1 |
| chr1 |
1636274 |
rs2179381 |
C |
T |
. |
PASS |
0.0688000 |
0.4251000 |
0.2490000 |
0.5209000 |
0.3323000 |
0.2967000 |
36.4 |
69.05 |
45 |
655.48 |
0.00 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
1636330 |
rs192815888 |
G |
A |
. |
PASS |
0.0000000 |
0.0043000 |
0.0000000 |
0.0060000 |
0.0000000 |
0.0017971 |
37.0 |
69.3 |
95 |
1000.00 |
1.65 |
38.95 |
0 |
38.95 |
0/1 |
| chr1 |
1639046 |
rs138369165 |
C |
G |
. |
PASS |
0.9342000 |
0.4942000 |
0.3353000 |
0.4911000 |
0.5031000 |
0.5795000 |
36.25 |
70.0 |
53 |
421.41 |
60.38 |
28.30 |
0 |
30.19 |
0/1 |
| chr1 |
1639062 |
rs149613000 |
T |
C |
. |
PASS |
0.4281000 |
0.3919000 |
0.2738000 |
0.3797000 |
0.4008000 |
0.3770000 |
37.0 |
70.0 |
44 |
252.81 |
59.09 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
1647649 |
rs70937179 |
C |
CT |
. |
PASS |
0.2148000 |
0.8516000 |
0.7788000 |
0.9155000 |
0.7648000 |
0.6647000 |
37.0 |
70.0 |
11 |
294.76 |
14.14 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
1647686 |
rs909823 |
A |
C |
. |
PASS |
0.5113000 |
0.8804000 |
0.7788000 |
0.9215000 |
0.7843000 |
0.7520000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1647745 |
rs72634830 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
89 |
367.97 |
14.61 |
17.98 |
0 |
17.98 |
0/1 |
| chr1 |
1647753 |
rs74045984 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
70.0 |
101 |
433.14 |
18.13 |
18.81 |
0 |
18.81 |
0/1 |
| chr1 |
1647778 |
rs72901773 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
69.67 |
183 |
1000.00 |
1.64 |
32.79 |
0 |
32.79 |
0/1 |
| chr1 |
1647814 |
rs72901775 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
70.0 |
230 |
1000.00 |
8.70 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
1647871 |
rs72909014 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.78 |
69.81 |
227 |
1000.00 |
1.93 |
47.58 |
0 |
47.58 |
0/1 |
| chr1 |
1647893 |
rs144636354,rs199866927 |
C |
CTTTCTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.36 |
70.0 |
192 |
1000.00 |
1.75 |
44.27 |
0 |
44.27 |
0/1 |
| chr1 |
1647928 |
rs1883424 |
A |
G |
. |
PASS |
0.0545000 |
0.4366000 |
0.5357000 |
0.3986000 |
0.4335000 |
0.3474000 |
36.0 |
70.0 |
114 |
602.88 |
1.32 |
21.05 |
0 |
21.05 |
0/1 |
| chr1 |
1647968 |
rs146207119 |
C |
CAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
70.0 |
45 |
592.13 |
3.74 |
42.22 |
0 |
42.22 |
0/1 |
| chr1 |
1647971 |
rs77394327 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
41 |
542.21 |
8.03 |
41.46 |
0 |
41.46 |
0/1 |
| chr1 |
1647983 |
rs74429813 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.33 |
70.0 |
26 |
237.04 |
21.37 |
34.62 |
0 |
34.62 |
0/1 |
| chr1 |
1647990 |
rs76519969 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
22 |
223.47 |
22.73 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
1648002 |
rs77107184 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
15 |
89.46 |
0.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
1648018 |
rs79409185 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
98.49 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
1648027 |
rs61776857 |
T |
C |
. |
PASS |
0.5809000 |
0.8876000 |
0.7788000 |
0.9215000 |
0.7781000 |
0.7702000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1650657 |
rs72909028 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
97.35 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
1650787 |
rs1137003 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.35 |
70.0 |
164 |
1000.00 |
3.82 |
56.10 |
0 |
56.10 |
0/1 |
| chr1 |
1650797 |
rs1059830 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.96 |
70.0 |
163 |
1000.00 |
2.79 |
56.44 |
0 |
56.44 |
0/1 |
| chr1 |
1650801 |
rs1137004 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.07 |
70.0 |
165 |
1000.00 |
5.05 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
1650807 |
rs1137005 |
T |
C |
. |
PASS |
0.4992000 |
0.8790000 |
0.7788000 |
0.9215000 |
0.7781000 |
0.7474000 |
36.52 |
70.0 |
172 |
1000.00 |
5.50 |
43.60 |
0 |
43.60 |
0/1 |
| chr1 |
1650832 |
rs72909030 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.42 |
70.0 |
188 |
1000.00 |
4.26 |
55.32 |
0 |
55.32 |
0/1 |
| chr1 |
1650845 |
rs1059831 |
G |
A |
. |
PASS |
0.4992000 |
0.8790000 |
0.7788000 |
0.9215000 |
0.7781000 |
0.7474000 |
36.59 |
70.0 |
184 |
1000.00 |
2.70 |
47.28 |
0 |
47.28 |
0/1 |
| chr1 |
1650920 |
rs36191908 |
G |
A |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
54 |
765.71 |
6.92 |
42.59 |
0 |
42.59 |
0/1 |
| chr1 |
1650938 |
. |
CGG |
CAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
70.0 |
39 |
554.25 |
1.81 |
43.59 |
0 |
43.59 |
0/1 |
| chr1 |
1650942 |
rs75972011 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.59 |
70.0 |
36 |
545.25 |
5.23 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
1650960 |
rs72634834 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
70.0 |
27 |
250.18 |
7.41 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
1650967 |
rs75384210 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
24 |
104.14 |
13.33 |
20.83 |
0 |
20.83 |
0/1 |
| chr1 |
1653004 |
rs36039898 |
T |
C |
. |
PASS |
0.4985000 |
0.8790000 |
0.7788000 |
0.9225000 |
0.7781000 |
0.7474000 |
36.45 |
66.77 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1653028 |
rs16825265 |
C |
T |
. |
PASS |
0.4985000 |
0.8790000 |
0.7788000 |
0.9225000 |
0.7781000 |
0.7474000 |
36.8 |
66.87 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1654038 |
rs61777494 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.22 |
10 |
313.51 |
0.00 |
90.00 |
0 |
90.00 |
0/1 |
| chr1 |
1654058 |
rs61777495 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.95 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1654064 |
rs200615789 |
A |
T |
. |
PASS |
0.3487000 |
0.8256000 |
0.7312000 |
0.8757000 |
0.7045000 |
0.6671000 |
37.0 |
66.71 |
21 |
837.55 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1654065 |
rs35174499 |
AGCG |
A |
. |
PASS |
0.3487000 |
0.8256000 |
0.7312000 |
0.8757000 |
0.7045000 |
0.6671000 |
35.48 |
65.72 |
25 |
919.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1660635 |
rs2377220 |
T |
G |
. |
PASS |
0.4864000 |
0.8444000 |
0.7768000 |
0.9135000 |
0.7035000 |
0.7226000 |
36.61 |
69.42 |
31 |
1000.00 |
2.45 |
93.55 |
0 |
100.00 |
1/1 |
| chr1 |
1660726 |
rs1061884 |
T |
C |
. |
PASS |
0.3865000 |
0.5908000 |
0.4474000 |
0.4930000 |
0.5061000 |
0.4718000 |
36.42 |
69.4 |
196 |
1000.00 |
3.16 |
42.35 |
0 |
42.35 |
0/1 |
| chr1 |
1660735 |
rs1061883 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
69.38 |
198 |
1000.00 |
1.30 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
1660812 |
rs1061881 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
68.55 |
109 |
922.32 |
6.98 |
28.44 |
0 |
28.44 |
0/1 |
| chr1 |
1663831 |
rs3817856 |
C |
T |
. |
PASS |
0.0787000 |
0.3069000 |
0.3026000 |
0.4861000 |
0.3282000 |
0.2859000 |
36.37 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1664019 |
rs2294488 |
T |
C |
. |
PASS |
0.3858000 |
0.8386000 |
0.7659000 |
0.9076000 |
0.6779000 |
0.6869000 |
36.25 |
68.75 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1666175 |
rs61777509 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.73 |
56.0 |
91 |
1000.00 |
7.72 |
49.45 |
0 |
49.45 |
0/1 |
| chr1 |
1666303 |
rs114928632 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
60.8 |
21 |
310.01 |
27.62 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
1669734 |
rs80140081 |
G |
T |
. |
PASS |
0.0764000 |
0.3127000 |
0.3016000 |
0.4871000 |
0.3395000 |
0.2883000 |
36.73 |
69.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1669844 |
. |
CCA |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0060000 |
0.0000000 |
0.0011981 |
35.39 |
68.57 |
52 |
725.15 |
12.21 |
44.23 |
0 |
44.23 |
0/1 |
| chr1 |
1670570 |
rs150051592 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.07 |
26 |
515.83 |
32.82 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
1686040 |
rs4751 |
G |
T |
. |
PASS |
0.0499000 |
0.2651000 |
0.2837000 |
0.4115000 |
0.3057000 |
0.2494000 |
35.97 |
70.0 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1686943 |
rs2072929 |
T |
C |
. |
PASS |
0.2723000 |
0.3415000 |
0.3353000 |
0.4751000 |
0.3640000 |
0.3532000 |
36.68 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1686962 |
rs2076327 |
C |
T |
. |
PASS |
0.1846000 |
0.4078000 |
0.3145000 |
0.4930000 |
0.3804000 |
0.3419000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1687625 |
rs34306661 |
T |
C |
. |
PASS |
0.1732000 |
0.2680000 |
0.2847000 |
0.4195000 |
0.3057000 |
0.2841000 |
36.43 |
70.0 |
21 |
829.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1687791 |
rs72634840 |
C |
T |
. |
PASS |
0.0023000 |
0.0245000 |
0.0000000 |
0.0507000 |
0.0041000 |
0.0149760 |
37.0 |
70.0 |
40 |
515.45 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
1688096 |
rs72634841 |
C |
T |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0129000 |
0.0000000 |
0.0029952 |
35.29 |
70.0 |
55 |
923.51 |
2.34 |
50.91 |
0 |
50.91 |
0/1 |
| chr1 |
1688469 |
rs4648623 |
C |
G |
. |
PASS |
0.4781000 |
0.8501000 |
0.7659000 |
0.9076000 |
0.6820000 |
0.7137000 |
36.74 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1688513 |
rs4648624 |
G |
T |
. |
PASS |
0.1407000 |
0.2666000 |
0.2827000 |
0.4115000 |
0.3037000 |
0.2730000 |
36.68 |
69.73 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1689762 |
rs2235537 |
T |
C |
. |
PASS |
0.3336000 |
0.2824000 |
0.4177000 |
0.4215000 |
0.3262000 |
0.3596000 |
37.0 |
70.0 |
107 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1696659 |
rs5021859 |
A |
G |
. |
PASS |
0.4955000 |
0.8703000 |
0.8304000 |
0.9314000 |
0.6943000 |
0.7412000 |
36.82 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1749412 |
rs115507312 |
T |
G |
. |
PASS |
0.0000000 |
0.0115000 |
0.0000000 |
0.0278000 |
0.0031000 |
0.0077875 |
37.0 |
70.0 |
15 |
252.40 |
15.00 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
1846582 |
rs2748987 |
A |
G |
. |
PASS |
0.9516000 |
0.8401000 |
0.8145000 |
0.7903000 |
0.7863000 |
0.8439000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1848734 |
rs941532 |
A |
G |
. |
PASS |
0.9992000 |
0.9784000 |
1.0000000 |
0.9533000 |
0.9949000 |
0.9864000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1854321 |
rs2250833 |
A |
G |
. |
PASS |
0.9516000 |
0.8314000 |
0.8125000 |
0.7753000 |
0.7873000 |
0.8395000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1855450 |
rs28423370 |
A |
G |
. |
PASS |
0.9917000 |
0.8444000 |
0.8145000 |
0.7893000 |
0.7955000 |
0.8566000 |
36.25 |
68.75 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1856098 |
rs752965 |
C |
T |
. |
PASS |
0.3888000 |
0.2104000 |
0.1766000 |
0.2396000 |
0.1278000 |
0.2404000 |
36.2 |
68.67 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1859131 |
rs4648734 |
C |
T |
. |
PASS |
0.1891000 |
0.1931000 |
0.1746000 |
0.2366000 |
0.1288000 |
0.1845000 |
35.97 |
70.0 |
152 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1870210 |
rs2803323 |
G |
A |
. |
PASS |
0.9402000 |
0.8256000 |
0.8115000 |
0.7714000 |
0.7873000 |
0.8347000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1873625 |
rs12758705 |
G |
A |
. |
PASS |
0.1785000 |
0.1916000 |
0.1726000 |
0.2336000 |
0.1309000 |
0.1809000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1887091 |
rs139735565 |
CG |
C |
. |
PASS |
0.1089000 |
0.2334000 |
0.2292000 |
0.2485000 |
0.1585000 |
0.1881000 |
36.23 |
69.17 |
48 |
1000.00 |
2.66 |
97.92 |
0 |
100.00 |
1/1 |
| chr1 |
1887111 |
rs3838975 |
GC |
G |
. |
PASS |
0.1059000 |
0.2320000 |
0.2292000 |
0.2475000 |
0.1585000 |
0.1869000 |
35.85 |
69.38 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1887245 |
rs28575980 |
G |
A |
. |
PASS |
0.1044000 |
0.2190000 |
0.2292000 |
0.2316000 |
0.1575000 |
0.1813000 |
37.0 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1888193 |
rs3820011 |
C |
A |
. |
PASS |
0.1067000 |
0.2320000 |
0.2282000 |
0.2455000 |
0.1605000 |
0.1869000 |
36.74 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1895177 |
rs7523728 |
C |
T |
. |
PASS |
0.1293000 |
0.1888000 |
0.1756000 |
0.2386000 |
0.1176000 |
0.1665000 |
36.38 |
70.0 |
76 |
1000.00 |
0.20 |
51.32 |
0 |
51.32 |
0/1 |
| chr1 |
1896185 |
rs13303324 |
T |
C |
. |
PASS |
0.1301000 |
0.1960000 |
0.2817000 |
0.2386000 |
0.1207000 |
0.1897000 |
37.0 |
70.0 |
21 |
322.03 |
31.43 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
1896223 |
rs13303202 |
C |
T |
. |
PASS |
0.1301000 |
0.1960000 |
0.2817000 |
0.2386000 |
0.1207000 |
0.1897000 |
34.88 |
70.0 |
37 |
530.24 |
7.00 |
45.95 |
0 |
45.95 |
0/1 |
| chr1 |
1896440 |
rs16824585 |
G |
A |
. |
PASS |
0.2489000 |
0.2032000 |
0.2718000 |
0.2276000 |
0.1145000 |
0.2167000 |
36.33 |
69.63 |
110 |
1000.00 |
4.92 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
1896553 |
rs28625839 |
C |
T |
. |
PASS |
0.1256000 |
0.1888000 |
0.1786000 |
0.2386000 |
0.1176000 |
0.1661000 |
35.29 |
67.14 |
12 |
211.79 |
4.76 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
1897753 |
rs4648600 |
C |
G |
. |
PASS |
0.1271000 |
0.1960000 |
0.2768000 |
0.2386000 |
0.1207000 |
0.1879000 |
37.0 |
70.0 |
53 |
722.80 |
4.97 |
41.51 |
0 |
41.51 |
0/1 |
| chr1 |
1898045 |
rs28712827 |
G |
A |
. |
PASS |
0.1195000 |
0.1960000 |
0.2817000 |
0.2386000 |
0.1207000 |
0.1869000 |
35.91 |
68.18 |
23 |
345.77 |
3.95 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
1900024 |
rs56985589 |
TG |
T |
. |
PASS |
0.1339000 |
0.1988000 |
0.3323000 |
0.2416000 |
0.1227000 |
0.2023000 |
36.67 |
70.0 |
37 |
592.46 |
15.02 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
1900106 |
rs61233860,rs145742571 |
T |
TCTC |
. |
PASS |
0.1324000 |
0.1945000 |
0.3284000 |
0.2376000 |
0.1196000 |
0.1991000 |
36.71 |
70.0 |
86 |
1000.00 |
3.13 |
56.98 |
0 |
56.98 |
0/1 |
| chr1 |
1900232 |
rs16824588 |
T |
C |
. |
PASS |
0.4312000 |
0.4380000 |
0.3125000 |
0.4314000 |
0.3262000 |
0.3878000 |
36.36 |
69.29 |
101 |
1000.00 |
1.34 |
55.45 |
0 |
55.45 |
0/1 |
| chr1 |
1900332 |
rs55709963 |
A |
G |
. |
PASS |
0.1293000 |
0.1744000 |
0.2728000 |
0.2167000 |
0.0910000 |
0.1745000 |
37.0 |
70.0 |
11 |
101.50 |
18.18 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
1903303 |
rs4648603 |
C |
T |
. |
PASS |
0.5348000 |
0.4409000 |
0.4107000 |
0.5557000 |
0.4980000 |
0.4938000 |
34.82 |
70.0 |
18 |
348.81 |
0.00 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
1916890 |
rs3795280 |
C |
T |
. |
PASS |
0.6573000 |
0.2795000 |
0.4335000 |
0.3082000 |
0.3947000 |
0.4385000 |
36.65 |
70.0 |
69 |
1000.00 |
1.62 |
49.28 |
0 |
49.28 |
0/1 |
| chr1 |
1918488 |
rs4350140 |
A |
G |
. |
PASS |
0.9395000 |
0.4467000 |
0.5278000 |
0.4831000 |
0.6012000 |
0.6306000 |
37.0 |
70.0 |
31 |
333.71 |
4.69 |
35.48 |
0 |
35.48 |
0/1 |
| chr1 |
1922303 |
rs13303195 |
C |
T |
. |
PASS |
0.9281000 |
0.4568000 |
0.6032000 |
0.4970000 |
0.6145000 |
0.6496000 |
35.88 |
70.0 |
68 |
1000.00 |
6.62 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
1956362 |
rs2376805 |
G |
A |
. |
PASS |
0.7935000 |
0.7349000 |
0.7381000 |
0.8280000 |
0.7648000 |
0.7756000 |
36.62 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1957037 |
rs2229110 |
T |
C |
. |
PASS |
0.7474000 |
0.5101000 |
0.3462000 |
0.6809000 |
0.4448000 |
0.5613000 |
36.62 |
70.0 |
126 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1957299 |
rs3820007 |
C |
T |
. |
PASS |
0.2375000 |
0.3112000 |
0.1617000 |
0.5318000 |
0.2362000 |
0.2913000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
1960926 |
rs28581504 |
T |
C |
. |
PASS |
0.8707000 |
0.7435000 |
0.8155000 |
0.8280000 |
0.8190000 |
0.8233000 |
36.0 |
70.0 |
24 |
942.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2005740 |
rs2459986 |
T |
C |
. |
PASS |
0.9924000 |
0.8098000 |
0.9990000 |
0.8628000 |
0.9417000 |
0.9325000 |
35.65 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2036263 |
rs10797413 |
G |
A |
. |
PASS |
0.4198000 |
0.5548000 |
0.6835000 |
0.6143000 |
0.5961000 |
0.5651000 |
36.31 |
69.88 |
173 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2121037 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121037 |
. |
TGCGGGGGAGCCGAGAGGCGGGGCTGCTG |
TGCGGGGGAGCCGAGAGGCGGGGCTGCTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
70.0 |
28 |
669.76 |
57.14 |
7.14 |
1 |
82.14 |
0/1 |
| chr1 |
2121037 |
. |
TGCGGGGGAGCCGAGAGGCGGGGCTGCTG |
T |
. |
PASS |
0.0825000 |
0.0245000 |
0.0198000 |
0.0239000 |
0.0061000 |
0.0351000 |
34.0 |
70.0 |
28 |
669.76 |
4.76 |
75.00 |
1 |
82.14 |
0/1 |
| chr1 |
2121038 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121039 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121040 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121041 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121042 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121043 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121044 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121045 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121046 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
5.19 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121047 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
0.87 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121048 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
32 |
675.78 |
2.38 |
65.62 |
1 |
65.62 |
0/1 |
| chr1 |
2121049 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
32 |
675.78 |
2.38 |
65.62 |
1 |
65.62 |
0/1 |
| chr1 |
2121050 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
32 |
675.78 |
2.38 |
65.62 |
1 |
65.62 |
0/1 |
| chr1 |
2121051 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
32 |
675.78 |
3.87 |
65.62 |
1 |
65.62 |
0/1 |
| chr1 |
2121052 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
0.87 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121053 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
34 |
669.76 |
5.32 |
61.76 |
1 |
61.76 |
0/1 |
| chr1 |
2121054 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
34 |
669.77 |
5.32 |
61.76 |
1 |
61.76 |
0/1 |
| chr1 |
2121055 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
34 |
669.76 |
5.32 |
61.76 |
1 |
61.76 |
0/1 |
| chr1 |
2121056 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
0.87 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121057 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
34 |
669.76 |
5.32 |
61.76 |
1 |
61.76 |
0/1 |
| chr1 |
2121058 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
32 |
675.78 |
2.38 |
65.62 |
1 |
65.62 |
0/1 |
| chr1 |
2121059 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
33 |
672.77 |
6.93 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
2121060 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
34 |
669.76 |
5.32 |
61.76 |
1 |
61.76 |
0/1 |
| chr1 |
2121061 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
34 |
669.76 |
5.32 |
61.76 |
1 |
61.76 |
0/1 |
| chr1 |
2121062 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
34 |
669.76 |
5.32 |
61.76 |
1 |
61.76 |
0/1 |
| chr1 |
2121063 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
34 |
669.76 |
5.32 |
61.76 |
1 |
61.76 |
0/1 |
| chr1 |
2121064 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.26 |
70.0 |
36 |
669.76 |
2.38 |
58.33 |
1 |
63.89 |
0/1 |
| chr1 |
2126139 |
rs6662296 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2234903 |
rs2256178 |
C |
T |
. |
PASS |
0.2277000 |
0.3429000 |
0.3026000 |
0.1849000 |
0.3252000 |
0.2692000 |
35.2 |
69.0 |
28 |
682.63 |
7.14 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
2235656 |
rs11577387 |
G |
A |
. |
PASS |
0.0197000 |
0.1037000 |
0.1062000 |
0.1650000 |
0.1247000 |
0.0984000 |
35.29 |
70.0 |
22 |
462.08 |
6.49 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
2286947 |
rs1039100 |
A |
G |
. |
PASS |
0.9667000 |
0.8833000 |
0.8383000 |
0.7734000 |
0.9284000 |
0.8830000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2316315 |
rs2843126 |
A |
G |
. |
PASS |
0.2791000 |
0.5476000 |
0.7470000 |
0.5199000 |
0.7178000 |
0.5445000 |
35.67 |
70.0 |
16 |
283.29 |
9.72 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
2327815 |
rs2840532 |
C |
T |
. |
PASS |
0.4357000 |
0.5706000 |
0.4802000 |
0.6163000 |
0.5613000 |
0.5242000 |
36.05 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2328714 |
rs2645081 |
A |
G |
. |
PASS |
0.6664000 |
0.8170000 |
0.9048000 |
0.8946000 |
0.7935000 |
0.8059000 |
36.61 |
69.35 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2332391 |
rs12037485 |
C |
T |
. |
PASS |
0.2678000 |
0.4539000 |
0.2550000 |
0.4483000 |
0.3344000 |
0.3403000 |
34.71 |
70.0 |
45 |
661.23 |
5.71 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
2337277 |
rs11586985 |
C |
T |
. |
PASS |
0.0068000 |
0.0778000 |
0.1151000 |
0.1272000 |
0.1002000 |
0.0809000 |
35.29 |
70.0 |
73 |
869.34 |
13.41 |
38.36 |
0 |
38.36 |
0/1 |
| chr1 |
2338126 |
rs3795269 |
C |
A |
. |
PASS |
0.2859000 |
0.4539000 |
0.2530000 |
0.4274000 |
0.3272000 |
0.3391000 |
36.2 |
70.0 |
51 |
1000.00 |
3.14 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
2340073 |
rs76530653 |
C |
G |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0005990 |
36.79 |
69.66 |
131 |
1000.00 |
0.42 |
44.27 |
0 |
44.27 |
0/1 |
| chr1 |
2340200 |
rs2494598 |
T |
C |
. |
PASS |
0.5688000 |
0.7666000 |
0.7282000 |
0.7913000 |
0.7014000 |
0.6989000 |
37.0 |
70.0 |
116 |
1000.00 |
4.29 |
67.24 |
0 |
67.24 |
0/1 |
| chr1 |
2409276 |
rs12049628 |
A |
G |
. |
PASS |
0.5726000 |
0.6571000 |
0.7907000 |
0.6143000 |
0.6963000 |
0.6607000 |
37.0 |
70.0 |
12 |
140.26 |
13.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
2409892 |
rs12727342 |
A |
G |
. |
PASS |
0.7352000 |
0.6671000 |
0.7897000 |
0.6292000 |
0.6922000 |
0.7071000 |
36.16 |
70.0 |
84 |
1000.00 |
0.17 |
51.19 |
0 |
51.19 |
0/1 |
| chr1 |
2411451 |
rs10797428 |
A |
G |
. |
PASS |
0.5658000 |
0.6585000 |
0.7758000 |
0.6203000 |
0.6922000 |
0.6565000 |
36.33 |
70.0 |
52 |
1000.00 |
2.99 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
2418935 |
rs10910082 |
C |
T |
. |
PASS |
0.4992000 |
0.6398000 |
0.7698000 |
0.6083000 |
0.6575000 |
0.6260000 |
37.0 |
67.14 |
17 |
208.76 |
35.29 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
2420590 |
rs10752744 |
T |
C |
. |
PASS |
0.9160000 |
0.8343000 |
0.9871000 |
0.7594000 |
0.8200000 |
0.8688000 |
36.29 |
70.0 |
30 |
575.32 |
4.31 |
56.67 |
0 |
56.67 |
0/1 |
| chr1 |
2420913 |
rs6668720 |
A |
G |
. |
PASS |
0.5983000 |
0.6729000 |
0.7907000 |
0.6521000 |
0.6789000 |
0.6739000 |
37.0 |
70.0 |
30 |
420.25 |
9.23 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
2422614 |
rs2477699 |
G |
A |
. |
PASS |
0.6694000 |
0.7550000 |
0.9107000 |
0.7137000 |
0.7372000 |
0.7520000 |
35.67 |
70.0 |
72 |
842.59 |
12.04 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
2433468 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
16 |
128.22 |
22.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
2433894 |
rs55874156 |
G |
A |
. |
PASS |
0.0008000 |
0.0086000 |
0.0000000 |
0.0209000 |
0.0072000 |
0.0069888 |
36.54 |
70.0 |
121 |
1000.00 |
7.44 |
42.98 |
0 |
42.98 |
0/1 |
| chr1 |
2433900 |
rs12736998 |
C |
T |
. |
PASS |
0.1793000 |
0.4582000 |
0.4851000 |
0.5229000 |
0.3395000 |
0.3798000 |
36.3 |
69.42 |
123 |
1000.00 |
5.73 |
56.10 |
0 |
56.10 |
0/1 |
| chr1 |
2444414 |
rs7535528 |
G |
A |
. |
PASS |
0.0136000 |
0.2983000 |
0.3046000 |
0.3867000 |
0.2137000 |
0.2256000 |
36.45 |
70.0 |
140 |
1000.00 |
5.71 |
47.14 |
0 |
47.14 |
0/1 |
| chr1 |
2452569 |
rs2985862 |
T |
C |
. |
PASS |
0.9100000 |
0.8084000 |
0.9563000 |
0.7316000 |
0.7904000 |
0.8460000 |
36.38 |
69.49 |
88 |
1000.00 |
6.00 |
44.32 |
0 |
44.32 |
0/1 |
| chr1 |
2488153 |
rs4870 |
A |
G |
. |
PASS |
0.7837000 |
0.5303000 |
0.5397000 |
0.4682000 |
0.6748000 |
0.6148000 |
36.66 |
70.0 |
83 |
1000.00 |
4.96 |
42.17 |
0 |
42.17 |
0/1 |
| chr1 |
2491205 |
rs2234161 |
C |
T |
. |
PASS |
0.8313000 |
0.5605000 |
0.5774000 |
0.4811000 |
0.6861000 |
0.6440000 |
35.29 |
70.0 |
36 |
139.56 |
43.65 |
19.44 |
0 |
19.44 |
0/1 |
| chr1 |
2494330 |
rs2234167 |
G |
A |
. |
PASS |
0.0991000 |
0.0937000 |
0.0556000 |
0.1471000 |
0.1738000 |
0.1138000 |
36.23 |
70.0 |
72 |
1000.00 |
0.36 |
43.06 |
0 |
43.06 |
0/1 |
| chr1 |
2494785 |
rs8725 |
G |
A |
. |
PASS |
0.7776000 |
0.5591000 |
0.5734000 |
0.4930000 |
0.6902000 |
0.6320000 |
35.91 |
70.0 |
16 |
366.84 |
11.36 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
2518186 |
rs10752746 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2522392 |
rs2296443 |
G |
A |
. |
PASS |
0.0144000 |
0.2277000 |
0.2927000 |
0.3250000 |
0.1881000 |
0.1963000 |
36.68 |
70.0 |
65 |
1000.00 |
6.57 |
56.92 |
0 |
56.92 |
0/1 |
| chr1 |
2525176 |
rs72644679 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
19 |
365.66 |
4.78 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
2527678 |
rs2260976 |
A |
G |
. |
PASS |
0.3843000 |
0.5533000 |
0.4712000 |
0.6899000 |
0.4642000 |
0.5022000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2528133 |
rs2843401 |
T |
C |
. |
PASS |
0.3835000 |
0.5519000 |
0.4722000 |
0.6889000 |
0.4632000 |
0.5016000 |
36.51 |
70.0 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2535570 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
35 |
168.17 |
148.57 |
22.86 |
0 |
22.86 |
0/1 |
| chr1 |
2560735 |
rs4648657 |
A |
G |
. |
PASS |
0.4402000 |
0.5490000 |
0.4702000 |
0.6909000 |
0.4714000 |
0.5178000 |
36.86 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2560882 |
rs4648658 |
G |
A |
. |
PASS |
0.2693000 |
0.5101000 |
0.4633000 |
0.6720000 |
0.4683000 |
0.4615000 |
36.58 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2560903 |
rs4648659 |
T |
G |
. |
PASS |
0.4334000 |
0.5519000 |
0.4683000 |
0.6909000 |
0.4703000 |
0.5158000 |
36.67 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2573199 |
rs4648662 |
A |
G |
. |
PASS |
0.9818000 |
0.8847000 |
0.9931000 |
0.8628000 |
0.9202000 |
0.9347000 |
36.52 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
2700117 |
rs4648502 |
C |
G |
. |
PASS |
0.0946000 |
0.3905000 |
0.3552000 |
0.4404000 |
0.2372000 |
0.2853000 |
36.13 |
70.0 |
105 |
1000.00 |
3.29 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
2938265 |
rs4576609 |
C |
T |
. |
PASS |
0.1324000 |
0.2406000 |
0.3978000 |
0.1610000 |
0.1074000 |
0.2017000 |
37.0 |
70.0 |
42 |
509.43 |
13.69 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
2938407 |
rs4013154 |
CAGA |
C |
. |
PASS |
0.0106000 |
0.2176000 |
0.1925000 |
0.1581000 |
0.0460000 |
0.1124000 |
35.97 |
70.0 |
73 |
1000.00 |
1.45 |
49.32 |
0 |
49.32 |
0/1 |
| chr1 |
2938569 |
rs35806103 |
C |
T |
. |
PASS |
0.1074000 |
0.0418000 |
0.0000000 |
0.0149000 |
0.0000000 |
0.0371000 |
36.14 |
70.0 |
70 |
902.38 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
2938697 |
rs3795262 |
T |
G |
. |
PASS |
0.1657000 |
0.2435000 |
0.3958000 |
0.1630000 |
0.0982000 |
0.2091000 |
36.22 |
70.0 |
104 |
1000.00 |
0.00 |
42.31 |
0 |
44.23 |
0/1 |
| chr1 |
2938924 |
rs72629486 |
T |
G |
. |
PASS |
0.0613000 |
0.0375000 |
0.0000000 |
0.0149000 |
0.0000000 |
0.0244000 |
36.33 |
70.0 |
86 |
1000.00 |
0.39 |
41.86 |
0 |
41.86 |
0/1 |
| chr1 |
2998934 |
rs2742686 |
T |
C |
. |
PASS |
0.9917000 |
0.8963000 |
0.9683000 |
0.8479000 |
0.9663000 |
0.9399000 |
36.4 |
69.0 |
35 |
685.58 |
10.00 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
2998998 |
rs10909873 |
C |
G |
. |
PASS |
0.3540000 |
0.5922000 |
0.6607000 |
0.6223000 |
0.6738000 |
0.5651000 |
37.0 |
69.61 |
94 |
1000.00 |
6.22 |
54.26 |
0 |
54.26 |
0/1 |
| chr1 |
2999068 |
rs2981886 |
T |
G |
. |
PASS |
0.4622000 |
0.6470000 |
0.8601000 |
0.6282000 |
0.7239000 |
0.6524000 |
37.0 |
70.0 |
74 |
1000.00 |
0.41 |
54.05 |
0 |
54.05 |
0/1 |
| chr1 |
3313282 |
rs7535965 |
G |
A |
. |
PASS |
0.3434000 |
0.2147000 |
0.0079000 |
0.3817000 |
0.1503000 |
0.2280000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3319615 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
54 |
254.92 |
5.05 |
20.37 |
0 |
20.37 |
0/1 |
| chr1 |
3319618 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
53 |
257.92 |
6.52 |
20.75 |
1 |
20.75 |
0/1 |
| chr1 |
3319618 |
. |
CCTCCCCTTCCCGTG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
39 |
257.92 |
0.93 |
28.21 |
1 |
33.33 |
0/1 |
| chr1 |
3319618 |
. |
CCTCCCCTTCCCGTG |
CCTCCCCTCCCCGTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.5 |
70.0 |
39 |
257.92 |
28.21 |
5.13 |
1 |
33.33 |
0/1 |
| chr1 |
3319619 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
52 |
260.92 |
4.20 |
21.15 |
1 |
21.15 |
0/1 |
| chr1 |
3319620 |
. |
TC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
52 |
260.92 |
4.20 |
21.15 |
1 |
21.15 |
0/1 |
| chr1 |
3319621 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
52 |
260.92 |
4.20 |
21.15 |
1 |
21.15 |
0/1 |
| chr1 |
3319622 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
50 |
266.94 |
3.27 |
22.00 |
1 |
22.00 |
0/1 |
| chr1 |
3319623 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
47 |
275.97 |
0.39 |
23.40 |
1 |
23.40 |
0/1 |
| chr1 |
3319624 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
45 |
282.02 |
1.62 |
24.44 |
1 |
24.44 |
0/1 |
| chr1 |
3319625 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
70.0 |
45 |
288.01 |
1.62 |
24.44 |
1 |
28.89 |
0/1 |
| chr1 |
3319626 |
. |
TC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
45 |
281.99 |
2.83 |
24.44 |
1 |
24.44 |
0/1 |
| chr1 |
3319627 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
45 |
281.99 |
1.62 |
24.44 |
1 |
24.44 |
0/1 |
| chr1 |
3319628 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
45 |
282.00 |
1.62 |
24.44 |
1 |
24.44 |
0/1 |
| chr1 |
3319629 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
42 |
291.02 |
6.06 |
26.19 |
1 |
26.19 |
0/1 |
| chr1 |
3319630 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
41 |
294.07 |
0.44 |
26.83 |
1 |
26.83 |
0/1 |
| chr1 |
3319631 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
43 |
288.01 |
2.96 |
25.58 |
1 |
25.58 |
0/1 |
| chr1 |
3319674 |
rs12562397 |
C |
T |
. |
PASS |
0.3722000 |
0.5432000 |
0.6339000 |
0.6511000 |
0.6677000 |
0.5623000 |
35.91 |
70.0 |
22 |
859.44 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3319681 |
rs12562399 |
C |
G |
. |
PASS |
0.3714000 |
0.5432000 |
0.6339000 |
0.6511000 |
0.6677000 |
0.5621000 |
35.2 |
70.0 |
20 |
759.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3328358 |
rs870124 |
T |
C |
. |
PASS |
0.9924000 |
0.9006000 |
0.9980000 |
0.8419000 |
0.9642000 |
0.9451000 |
36.24 |
69.68 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3328659 |
rs2493292 |
C |
T |
. |
PASS |
0.1634000 |
0.1210000 |
0.0060000 |
0.1660000 |
0.0593000 |
0.1060000 |
37.0 |
70.0 |
96 |
1000.00 |
9.31 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
3329384 |
rs2493291 |
C |
T |
. |
PASS |
0.1717000 |
0.1196000 |
0.0060000 |
0.1610000 |
0.0593000 |
0.1070000 |
36.25 |
70.0 |
36 |
515.49 |
18.06 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
3331733 |
rs2483228 |
T |
C |
. |
PASS |
0.5991000 |
0.5303000 |
0.3472000 |
0.4503000 |
0.3599000 |
0.4623000 |
36.53 |
70.0 |
128 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3331899 |
rs1999528 |
A |
G |
. |
PASS |
0.9713000 |
0.5850000 |
0.3879000 |
0.5089000 |
0.3354000 |
0.5833000 |
37.0 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3342109 |
rs41303861 |
G |
T |
. |
PASS |
0.0991000 |
0.1398000 |
0.0179000 |
0.2217000 |
0.1217000 |
0.1174000 |
36.25 |
70.0 |
54 |
1000.00 |
4.86 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
3342530 |
rs2244013 |
G |
A |
. |
PASS |
0.7723000 |
0.3573000 |
0.1994000 |
0.2624000 |
0.1564000 |
0.3768000 |
35.5 |
70.0 |
12 |
253.56 |
33.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
3342804 |
rs870171 |
G |
T |
. |
PASS |
0.4387000 |
0.3444000 |
0.5238000 |
0.2753000 |
0.2822000 |
0.3794000 |
35.29 |
70.0 |
25 |
168.52 |
14.86 |
28.00 |
0 |
28.00 |
0/1 |
| chr1 |
3350134 |
rs10752734 |
T |
C |
. |
PASS |
0.5182000 |
0.3775000 |
0.5159000 |
0.4811000 |
0.3937000 |
0.4665000 |
36.0 |
69.75 |
24 |
942.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3383665 |
rs7550948 |
G |
A |
. |
PASS |
0.3880000 |
0.7536000 |
0.6657000 |
0.8698000 |
0.8517000 |
0.6819000 |
35.36 |
70.0 |
35 |
745.10 |
13.25 |
62.86 |
0 |
62.86 |
0/1 |
| chr1 |
3383898 |
rs6424078 |
A |
G |
. |
PASS |
0.8563000 |
0.8343000 |
0.8026000 |
0.9125000 |
0.8885000 |
0.8600000 |
37.0 |
70.0 |
78 |
1000.00 |
9.09 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
3384052 |
rs45512802 |
C |
T |
. |
PASS |
0.0310000 |
0.0231000 |
0.0000000 |
0.0378000 |
0.0000000 |
0.0189700 |
37.0 |
70.0 |
10 |
188.05 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
3389727 |
rs2185639 |
C |
T |
. |
PASS |
0.3850000 |
0.7550000 |
0.6746000 |
0.8638000 |
0.8650000 |
0.6845000 |
36.24 |
69.68 |
110 |
1000.00 |
1.13 |
57.27 |
0 |
57.27 |
0/1 |
| chr1 |
3394456 |
rs4638054 |
T |
C |
. |
PASS |
0.8971000 |
0.9928000 |
1.0000000 |
0.9980000 |
0.9959000 |
0.9706000 |
36.13 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3394640 |
rs4422946 |
A |
G |
. |
PASS |
0.8328000 |
0.9352000 |
0.8700000 |
0.9245000 |
0.9703000 |
0.8998000 |
36.33 |
70.0 |
55 |
541.84 |
8.48 |
32.73 |
0 |
32.73 |
0/1 |
| chr1 |
3394674 |
rs4534324 |
T |
C |
. |
PASS |
0.8971000 |
0.9928000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9714000 |
35.86 |
70.0 |
21 |
817.67 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3395039 |
rs10797395 |
G |
A |
. |
PASS |
0.3873000 |
0.7637000 |
0.6766000 |
0.8628000 |
0.8630000 |
0.6861000 |
35.8 |
70.0 |
98 |
1000.00 |
2.24 |
40.82 |
0 |
40.82 |
0/1 |
| chr1 |
3395229 |
rs4553117 |
T |
C |
. |
PASS |
0.9070000 |
0.9914000 |
0.9960000 |
1.0000000 |
1.0000000 |
0.9734000 |
36.67 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3397062 |
rs56309807 |
G |
A |
. |
PASS |
0.0318000 |
0.0245000 |
0.0000000 |
0.0368000 |
0.0000000 |
0.0191690 |
36.01 |
69.45 |
168 |
1000.00 |
5.19 |
43.45 |
0 |
43.45 |
0/1 |
| chr1 |
3397188 |
rs2487677 |
T |
C |
. |
PASS |
0.9697000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9918000 |
36.79 |
70.0 |
58 |
1000.00 |
0.74 |
96.55 |
0 |
96.55 |
1/1 |
| chr1 |
3417123 |
rs72633385 |
G |
A |
. |
PASS |
0.0038000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0009984 |
37.0 |
70.0 |
27 |
387.51 |
7.41 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
3418565 |
rs2821030 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
36 |
557.27 |
15.03 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
3421658 |
rs2821009 |
A |
T |
. |
PASS |
0.6891000 |
0.4352000 |
0.6627000 |
0.3201000 |
0.3538000 |
0.5090000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3421897 |
rs2821008 |
A |
G |
. |
PASS |
0.4251000 |
0.2277000 |
0.2331000 |
0.1799000 |
0.1656000 |
0.2592000 |
36.64 |
70.0 |
58 |
1000.00 |
3.13 |
56.90 |
0 |
56.90 |
0/1 |
| chr1 |
3424388 |
rs947345 |
G |
A |
. |
PASS |
0.1067000 |
0.0476000 |
0.0466000 |
0.0676000 |
0.0102000 |
0.0597000 |
36.44 |
70.0 |
92 |
1000.00 |
9.45 |
46.74 |
0 |
46.74 |
0/1 |
| chr1 |
3428160 |
rs2820999 |
T |
G |
. |
PASS |
0.7511000 |
0.4049000 |
0.6409000 |
0.2863000 |
0.3027000 |
0.5000000 |
36.57 |
70.0 |
166 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3428424 |
rs4648391 |
G |
T |
. |
PASS |
0.4667000 |
0.2536000 |
0.5089000 |
0.1988000 |
0.2362000 |
0.3468000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3428428 |
rs4648514 |
C |
T |
. |
PASS |
0.4667000 |
0.2536000 |
0.5089000 |
0.1988000 |
0.2362000 |
0.3468000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3428608 |
rs11585362 |
G |
A |
. |
PASS |
0.3411000 |
0.1945000 |
0.4048000 |
0.1501000 |
0.1360000 |
0.2552000 |
36.64 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3440647 |
rs2794322 |
T |
C |
. |
PASS |
0.9516000 |
0.9524000 |
0.9137000 |
0.9662000 |
0.9049000 |
0.9379000 |
36.84 |
69.73 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3496328 |
rs2821051 |
T |
C |
. |
PASS |
0.6483000 |
0.8718000 |
0.7063000 |
0.9105000 |
0.8885000 |
0.7905000 |
36.68 |
69.46 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3496479 |
rs2794340 |
T |
C |
. |
PASS |
0.8691000 |
0.8919000 |
0.7054000 |
0.9155000 |
0.8906000 |
0.8528000 |
36.55 |
69.85 |
133 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3511862 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
56.72 |
33.33 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
3511934 |
rs7513275 |
A |
G |
. |
PASS |
0.2405000 |
0.1859000 |
0.3323000 |
0.1451000 |
0.2147000 |
0.2272000 |
36.54 |
70.0 |
49 |
894.06 |
12.87 |
53.06 |
0 |
53.06 |
0/1 |
| chr1 |
3518944 |
rs7521546 |
T |
C |
. |
PASS |
0.5454000 |
0.6326000 |
0.6478000 |
0.6769000 |
0.6186000 |
0.6188000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3545175 |
rs147637374,rs58849058 |
GTTCTGGGAGCTCCTCCCCC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3548136 |
rs2760321 |
T |
C |
. |
PASS |
0.8926000 |
0.8458000 |
0.9950000 |
0.8360000 |
0.9479000 |
0.9061000 |
36.43 |
70.0 |
127 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3548832 |
rs2760320 |
G |
C |
. |
PASS |
0.0348000 |
0.1398000 |
0.0020000 |
0.0547000 |
0.0470000 |
0.0491000 |
36.56 |
70.0 |
112 |
1000.00 |
10.58 |
48.21 |
0 |
48.21 |
0/1 |
| chr1 |
3553789 |
rs2821058 |
T |
C |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
0.9930000 |
0.9816000 |
0.9948000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3566625 |
rs145464993 |
AGCAGGCTG |
A |
. |
PASS |
0.1203000 |
0.4222000 |
0.4653000 |
0.4881000 |
0.4724000 |
0.3742000 |
34.62 |
70.0 |
19 |
96.63 |
6.58 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
3607520 |
rs3765730 |
G |
A |
. |
PASS |
0.0219000 |
0.2305000 |
0.3502000 |
0.3797000 |
0.2679000 |
0.2368000 |
36.24 |
70.0 |
124 |
1000.00 |
3.15 |
50.81 |
0 |
50.81 |
0/1 |
| chr1 |
3638674 |
rs1801174 |
C |
T |
. |
PASS |
0.7738000 |
0.7219000 |
0.5268000 |
0.9135000 |
0.7280000 |
0.7360000 |
36.7 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3638834 |
rs12737840 |
C |
T |
. |
PASS |
0.0938000 |
0.3761000 |
0.0228000 |
0.4006000 |
0.3190000 |
0.2242000 |
37.0 |
70.0 |
40 |
598.99 |
2.78 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
3640085 |
rs6424091 |
C |
G |
. |
PASS |
0.8707000 |
0.6988000 |
0.5407000 |
0.8638000 |
0.6534000 |
0.7366000 |
35.72 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3640134 |
rs35939665,rs59901813 |
TCTGC |
T |
. |
PASS |
0.7806000 |
0.6916000 |
0.5486000 |
0.8638000 |
0.6534000 |
0.7135000 |
36.58 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3644349 |
rs2181486 |
A |
G |
. |
PASS |
0.7753000 |
0.6758000 |
0.3353000 |
0.8250000 |
0.6063000 |
0.6500000 |
36.61 |
70.0 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3644374 |
rs2146657 |
A |
G |
. |
PASS |
0.7723000 |
0.6758000 |
0.3353000 |
0.8280000 |
0.6074000 |
0.6500000 |
36.52 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3644669 |
rs2236367 |
C |
T |
. |
PASS |
0.0356000 |
0.0418000 |
0.0625000 |
0.0736000 |
0.1524000 |
0.0723000 |
36.29 |
70.0 |
38 |
551.24 |
11.15 |
44.74 |
0 |
44.74 |
0/1 |
| chr1 |
3644805 |
rs2236366 |
A |
G |
. |
PASS |
0.6657000 |
0.1066000 |
0.2817000 |
0.1083000 |
0.2260000 |
0.3131000 |
37.0 |
69.41 |
79 |
1000.00 |
5.44 |
43.04 |
0 |
43.04 |
0/1 |
| chr1 |
3644858 |
rs2236365 |
G |
C |
. |
PASS |
0.4675000 |
0.0807000 |
0.0625000 |
0.0775000 |
0.1524000 |
0.1925000 |
36.08 |
70.0 |
35 |
389.04 |
14.07 |
37.14 |
0 |
37.14 |
0/1 |
| chr1 |
3669172 |
rs41315312 |
C |
T |
. |
PASS |
0.0461000 |
0.0418000 |
0.0645000 |
0.0875000 |
0.1503000 |
0.0779000 |
36.69 |
70.0 |
101 |
1000.00 |
4.37 |
38.61 |
0 |
38.61 |
0/1 |
| chr1 |
3669201 |
rs10797410 |
A |
G |
. |
PASS |
0.8389000 |
0.4452000 |
0.2897000 |
0.3996000 |
0.4468000 |
0.5090000 |
36.75 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3669205 |
rs10910021 |
C |
G |
. |
PASS |
0.4017000 |
0.4078000 |
0.2897000 |
0.3946000 |
0.4458000 |
0.3872000 |
36.88 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3672156 |
rs4648555 |
C |
A |
. |
PASS |
0.0855000 |
0.2767000 |
0.0089000 |
0.2803000 |
0.1984000 |
0.1577000 |
36.14 |
70.0 |
45 |
973.49 |
8.41 |
62.22 |
0 |
62.22 |
0/1 |
| chr1 |
3673496 |
rs4648405 |
T |
G |
. |
PASS |
0.3033000 |
0.3617000 |
0.2222000 |
0.3002000 |
0.2423000 |
0.2825000 |
36.11 |
69.26 |
45 |
931.72 |
16.30 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
3677933 |
rs1181883 |
T |
C |
. |
PASS |
0.6944000 |
0.4683000 |
0.2788000 |
0.4354000 |
0.4315000 |
0.4760000 |
36.31 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3679139 |
rs1181879 |
T |
C |
. |
PASS |
0.8154000 |
0.4841000 |
0.2847000 |
0.4563000 |
0.4387000 |
0.5170000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3679146 |
rs4648556 |
G |
A |
. |
PASS |
0.1430000 |
0.2824000 |
0.0089000 |
0.2952000 |
0.2127000 |
0.1795000 |
37.0 |
70.0 |
17 |
208.75 |
15.13 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
3679307 |
rs4648557 |
T |
C |
. |
PASS |
0.1430000 |
0.2839000 |
0.0089000 |
0.2962000 |
0.2127000 |
0.1799000 |
37.0 |
70.0 |
29 |
590.34 |
11.36 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
3679775 |
rs10910024 |
C |
T |
. |
PASS |
0.1074000 |
0.2738000 |
0.0030000 |
0.2435000 |
0.1677000 |
0.1486000 |
35.93 |
70.0 |
90 |
1000.00 |
2.70 |
62.22 |
0 |
62.22 |
0/1 |
| chr1 |
3680056 |
rs56079032 |
G |
A |
. |
PASS |
0.0023000 |
0.0245000 |
0.0000000 |
0.0447000 |
0.0051000 |
0.0139780 |
37.0 |
70.0 |
67 |
977.21 |
3.81 |
43.28 |
0 |
43.28 |
0/1 |
| chr1 |
3683690 |
rs1181873 |
A |
C |
. |
PASS |
0.6997000 |
0.2752000 |
0.0198000 |
0.4274000 |
0.2699000 |
0.3654000 |
37.0 |
70.0 |
13 |
174.87 |
15.38 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
3703337 |
rs2368537 |
G |
C |
. |
PASS |
0.3457000 |
0.4539000 |
0.3998000 |
0.6481000 |
0.5256000 |
0.4675000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3703710 |
rs2253143 |
G |
A |
. |
PASS |
0.0068000 |
0.1110000 |
0.2837000 |
0.0318000 |
0.0644000 |
0.0933000 |
35.88 |
70.0 |
72 |
1000.00 |
3.47 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
3746583 |
rs2275828 |
G |
T |
. |
PASS |
0.2360000 |
0.4928000 |
0.3383000 |
0.4294000 |
0.3323000 |
0.3498000 |
35.8 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3746589 |
rs2275826 |
C |
G |
. |
PASS |
0.9198000 |
0.8689000 |
0.4792000 |
0.9443000 |
0.7178000 |
0.7895000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3747580 |
rs6424058 |
C |
T |
. |
PASS |
0.2179000 |
0.4928000 |
0.3383000 |
0.4294000 |
0.3323000 |
0.3450000 |
36.29 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3747603 |
rs6413779 |
T |
C |
. |
PASS |
0.9198000 |
0.8689000 |
0.4792000 |
0.9443000 |
0.7178000 |
0.7895000 |
36.56 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3753136 |
rs2275824 |
A |
T |
. |
PASS |
0.0605000 |
0.4870000 |
0.3383000 |
0.4284000 |
0.3333000 |
0.3027000 |
36.0 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3755675 |
rs1891941 |
T |
C |
. |
PASS |
0.9198000 |
0.8689000 |
0.4792000 |
0.9443000 |
0.7178000 |
0.7895000 |
36.8 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3756120 |
rs1539649 |
A |
G |
. |
PASS |
0.2390000 |
0.5403000 |
0.4266000 |
0.4583000 |
0.3507000 |
0.3844000 |
36.0 |
69.17 |
24 |
942.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3761479 |
rs2275822 |
C |
T |
. |
PASS |
0.2345000 |
0.4928000 |
0.3383000 |
0.4294000 |
0.3323000 |
0.3494000 |
36.82 |
70.0 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3775454 |
rs4376673 |
C |
G |
. |
PASS |
0.9697000 |
0.8703000 |
0.5000000 |
0.9433000 |
0.7505000 |
0.8133000 |
36.81 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3782608 |
rs10909809 |
C |
T |
. |
PASS |
0.2693000 |
0.5346000 |
0.3095000 |
0.6511000 |
0.4918000 |
0.4343000 |
37.0 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3800242 |
rs3205087 |
A |
G |
. |
PASS |
0.3124000 |
0.3256000 |
0.3482000 |
0.4105000 |
0.3875000 |
0.3558000 |
36.08 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3806643 |
rs4520357 |
T |
A |
. |
PASS |
0.5696000 |
0.3602000 |
0.4335000 |
0.3241000 |
0.3528000 |
0.4215000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3807593 |
rs4274008 |
G |
C |
. |
PASS |
0.9992000 |
0.9986000 |
0.9990000 |
0.9930000 |
0.9990000 |
0.9978000 |
36.61 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
3809423 |
rs11807227 |
G |
A |
. |
PASS |
0.1006000 |
0.1124000 |
0.2331000 |
0.1262000 |
0.1595000 |
0.1456000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
4004399 |
rs55651676 |
C |
G |
. |
PASS |
0.6619000 |
0.3285000 |
0.3482000 |
0.3728000 |
0.4796000 |
0.4589000 |
35.77 |
70.0 |
92 |
1000.00 |
1.78 |
42.39 |
0 |
42.39 |
0/1 |
| chr1 |
4363645 |
rs5772148 |
CT |
C |
. |
PASS |
0.9077000 |
0.6614000 |
0.7857000 |
0.6948000 |
0.6043000 |
0.7470000 |
35.42 |
70.0 |
26 |
361.94 |
21.79 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
4363735 |
rs34429154 |
C |
A |
. |
PASS |
0.3555000 |
0.4755000 |
0.5228000 |
0.5974000 |
0.4939000 |
0.4814000 |
36.55 |
70.0 |
129 |
1000.00 |
1.58 |
41.09 |
0 |
41.09 |
0/1 |
| chr1 |
4715401 |
. |
C |
A |
. |
PASS |
0.0000000 |
0.0043000 |
0.0000000 |
0.0050000 |
0.0010000 |
0.0017971 |
37.0 |
70.0 |
27 |
299.81 |
5.93 |
37.04 |
0 |
37.04 |
0/1 |
| chr1 |
4772053 |
rs1061968 |
T |
C |
. |
PASS |
0.5212000 |
0.5014000 |
0.6567000 |
0.3668000 |
0.5828000 |
0.5268000 |
36.45 |
70.0 |
87 |
1000.00 |
10.34 |
50.57 |
0 |
50.57 |
0/1 |
| chr1 |
4772717 |
rs242056 |
G |
A |
. |
PASS |
0.1664000 |
0.3761000 |
0.2728000 |
0.6431000 |
0.4131000 |
0.3608000 |
35.52 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
4834606 |
rs389959 |
T |
C |
. |
PASS |
0.1483000 |
0.1758000 |
0.0486000 |
0.2674000 |
0.1626000 |
0.1587000 |
37.0 |
70.0 |
65 |
1000.00 |
4.76 |
50.77 |
0 |
50.77 |
0/1 |
| chr1 |
4999647 |
. |
ATATGATGTCAATATCCTCCG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.41 |
70.0 |
82 |
1000.00 |
6.31 |
62.20 |
0 |
63.41 |
0/1 |
| chr1 |
5330103 |
rs587619 |
A |
G |
. |
PASS |
0.3003000 |
0.4798000 |
0.3383000 |
0.6352000 |
0.3967000 |
0.4189000 |
36.71 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5330208 |
rs684796 |
A |
G |
. |
PASS |
0.3003000 |
0.4798000 |
0.3383000 |
0.6352000 |
0.3967000 |
0.4189000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5330239 |
rs493993 |
T |
C |
. |
PASS |
0.3608000 |
0.4856000 |
0.3383000 |
0.6352000 |
0.3937000 |
0.4351000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5330286 |
rs494138 |
C |
T |
. |
PASS |
0.3003000 |
0.4798000 |
0.3383000 |
0.6352000 |
0.3967000 |
0.4189000 |
34.6 |
70.0 |
10 |
358.20 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5664897 |
rs72641915 |
C |
T |
. |
PASS |
0.0371000 |
0.1455000 |
0.1121000 |
0.1759000 |
0.0930000 |
0.1060000 |
35.4 |
70.0 |
23 |
500.84 |
5.80 |
65.22 |
0 |
65.22 |
0/1 |
| chr1 |
5665134 |
rs770686 |
G |
T |
. |
PASS |
0.9644000 |
0.8588000 |
0.8889000 |
0.7495000 |
0.7393000 |
0.8474000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5934490 |
rs868163 |
A |
G |
. |
PASS |
0.7065000 |
0.5317000 |
0.3065000 |
0.6252000 |
0.6237000 |
0.5693000 |
36.71 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5934837 |
rs1287638 |
C |
T |
. |
PASS |
0.5998000 |
0.3444000 |
0.0992000 |
0.4861000 |
0.4162000 |
0.4050000 |
36.79 |
69.65 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5935162 |
rs1287637 |
A |
T |
. |
PASS |
0.9100000 |
0.8401000 |
0.7907000 |
0.8111000 |
0.8425000 |
0.8433000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5935222 |
rs963030 |
T |
C |
. |
PASS |
0.3828000 |
0.3559000 |
0.2619000 |
0.4553000 |
0.3456000 |
0.3620000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5937091 |
rs1622955 |
T |
C |
. |
PASS |
0.9932000 |
0.8473000 |
0.8671000 |
0.8976000 |
0.8691000 |
0.9042000 |
37.0 |
69.52 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5937391 |
rs3747989 |
C |
T |
. |
PASS |
0.9690000 |
0.7522000 |
0.8373000 |
0.8121000 |
0.7219000 |
0.8327000 |
36.7 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
5967064 |
rs9628990 |
G |
T |
. |
PASS |
0.0401000 |
0.0965000 |
0.0099000 |
0.1819000 |
0.1309000 |
0.0881000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6027167 |
rs875574 |
C |
A |
. |
PASS |
0.7360000 |
0.6369000 |
0.7460000 |
0.6600000 |
0.6370000 |
0.6897000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6027252 |
rs875573 |
A |
G |
. |
PASS |
0.6286000 |
0.6311000 |
0.7460000 |
0.6581000 |
0.6370000 |
0.6601000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6111721 |
rs202153711 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0050000 |
0.0031000 |
0.0015974 |
37.0 |
70.0 |
73 |
792.06 |
0.11 |
34.25 |
0 |
34.25 |
0/1 |
| chr1 |
6111757 |
rs11589347 |
G |
A |
. |
PASS |
0.0008000 |
0.0375000 |
0.0010000 |
0.0457000 |
0.0092000 |
0.0165730 |
37.0 |
70.0 |
81 |
1000.00 |
1.20 |
50.62 |
0 |
50.62 |
0/1 |
| chr1 |
6142418 |
rs72630691 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
14 |
92.47 |
0.00 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
6145365 |
rs2294936 |
A |
G |
. |
PASS |
0.7716000 |
0.6571000 |
0.7798000 |
0.6551000 |
0.5286000 |
0.6865000 |
37.0 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6154417 |
rs2294932 |
C |
T |
. |
PASS |
0.1331000 |
0.2233000 |
0.3899000 |
0.2515000 |
0.1840000 |
0.2310000 |
37.0 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6155332 |
rs1555144 |
T |
C |
. |
PASS |
0.8722000 |
0.7176000 |
0.7530000 |
0.7157000 |
0.5235000 |
0.7272000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6155530 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
28.2 |
70.0 |
49 |
310.35 |
130.61 |
30.61 |
0 |
30.61 |
0/1 |
| chr1 |
6155535 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.43 |
70.0 |
52 |
355.63 |
130.77 |
26.92 |
0 |
26.92 |
0/1 |
| chr1 |
6155540 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
51 |
275.09 |
141.18 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
6157434 |
rs2311802 |
C |
T |
. |
PASS |
0.7088000 |
0.5418000 |
0.1875000 |
0.4672000 |
0.3088000 |
0.4541000 |
36.6 |
70.0 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6158562 |
rs2229002 |
A |
G |
. |
PASS |
0.6415000 |
0.6095000 |
0.4018000 |
0.6093000 |
0.4448000 |
0.5439000 |
36.04 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6170353 |
rs2281303 |
C |
T |
. |
PASS |
0.1755000 |
0.1556000 |
0.1974000 |
0.0954000 |
0.2219000 |
0.1701000 |
35.65 |
69.68 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6170424 |
rs78789357 |
CG |
C |
. |
PASS |
0.5363000 |
0.5029000 |
0.6141000 |
0.4583000 |
0.6851000 |
0.5607000 |
36.2 |
69.9 |
192 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6172875 |
rs4908515 |
G |
A |
. |
PASS |
0.6362000 |
0.5865000 |
0.9950000 |
0.5835000 |
0.8262000 |
0.7280000 |
35.59 |
70.0 |
17 |
650.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6184092 |
rs2843493 |
A |
G |
. |
PASS |
0.6120000 |
0.5994000 |
0.9940000 |
0.5994000 |
0.8323000 |
0.7276000 |
36.88 |
70.0 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6184192 |
rs2273041 |
A |
G |
. |
PASS |
0.6089000 |
0.5216000 |
0.8254000 |
0.4463000 |
0.7658000 |
0.6384000 |
35.7 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6184286 |
rs2273040 |
A |
G |
. |
PASS |
0.5976000 |
0.5821000 |
0.8274000 |
0.5567000 |
0.7832000 |
0.6697000 |
33.73 |
70.0 |
11 |
387.96 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6185064 |
rs55930553 |
G |
A |
. |
PASS |
0.0832000 |
0.3429000 |
0.1756000 |
0.2773000 |
0.4479000 |
0.2480000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6185532 |
rs2273037 |
G |
A |
. |
PASS |
0.0840000 |
0.3429000 |
0.1756000 |
0.2773000 |
0.4479000 |
0.2482000 |
33.48 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6188044 |
rs3215558 |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
70.0 |
21 |
796.11 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6188546 |
rs2273034 |
G |
A |
. |
PASS |
0.0817000 |
0.3444000 |
0.1875000 |
0.2773000 |
0.4479000 |
0.2502000 |
35.84 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6188779 |
rs2273033 |
G |
C |
. |
PASS |
0.0832000 |
0.3458000 |
0.1875000 |
0.2773000 |
0.4479000 |
0.2508000 |
36.48 |
70.0 |
23 |
909.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6195493 |
rs2250504 |
G |
A |
. |
PASS |
0.3139000 |
0.4640000 |
0.7956000 |
0.3956000 |
0.6309000 |
0.5100000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6196493 |
rs7526887 |
A |
G |
. |
PASS |
0.3359000 |
0.4683000 |
0.7986000 |
0.3956000 |
0.6309000 |
0.5170000 |
33.57 |
68.57 |
14 |
501.25 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6196517 |
rs7513548 |
G |
A |
. |
PASS |
0.3351000 |
0.4683000 |
0.7986000 |
0.3956000 |
0.6309000 |
0.5168000 |
36.54 |
69.23 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6196869 |
rs2250358 |
A |
G |
. |
PASS |
0.3366000 |
0.4697000 |
0.7996000 |
0.3946000 |
0.6329000 |
0.5178000 |
37.0 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6196943 |
rs2746066 |
A |
G |
. |
PASS |
0.3359000 |
0.4683000 |
0.7996000 |
0.3946000 |
0.6309000 |
0.5170000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6196951 |
rs2785582 |
T |
A |
. |
PASS |
0.3366000 |
0.4683000 |
0.7996000 |
0.3946000 |
0.6309000 |
0.5172000 |
35.0 |
70.0 |
12 |
437.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6204222 |
rs17489787 |
C |
G |
. |
PASS |
0.1967000 |
0.1326000 |
0.1359000 |
0.0944000 |
0.2577000 |
0.1669000 |
35.67 |
70.0 |
27 |
246.03 |
7.41 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
6204266 |
rs9435102 |
A |
G |
. |
PASS |
0.8245000 |
0.5476000 |
0.8413000 |
0.4891000 |
0.7658000 |
0.7107000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6206153 |
rs2294715 |
T |
C |
. |
PASS |
0.3389000 |
0.0865000 |
0.4048000 |
0.1362000 |
0.1728000 |
0.2440000 |
37.0 |
70.0 |
11 |
185.04 |
15.15 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
6209363 |
rs12565328 |
T |
C |
. |
PASS |
0.7216000 |
0.2147000 |
0.6538000 |
0.3082000 |
0.5634000 |
0.5238000 |
36.62 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6211183 |
rs9434711 |
G |
A |
. |
PASS |
0.6906000 |
0.2089000 |
0.6528000 |
0.3002000 |
0.5286000 |
0.5062000 |
36.65 |
70.0 |
104 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6212356 |
rs1883605 |
G |
A |
. |
PASS |
0.1112000 |
0.0360000 |
0.0079000 |
0.0765000 |
0.1339000 |
0.0775000 |
37.0 |
70.0 |
13 |
137.25 |
0.00 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
6212408 |
rs746122 |
G |
A |
. |
PASS |
0.1483000 |
0.0389000 |
0.0079000 |
0.0775000 |
0.1339000 |
0.0879000 |
36.5 |
70.0 |
49 |
810.52 |
0.68 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
6215736 |
rs12074369 |
C |
G |
. |
PASS |
0.3714000 |
0.0605000 |
0.0079000 |
0.0805000 |
0.1278000 |
0.1492000 |
37.0 |
70.0 |
92 |
1000.00 |
6.07 |
46.74 |
0 |
46.74 |
0/1 |
| chr1 |
6239937 |
rs70981314 |
C |
CG |
. |
PASS |
0.9939000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9984000 |
37.0 |
70.0 |
13 |
491.94 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6257826 |
rs2294714 |
T |
C |
. |
PASS |
0.4410000 |
0.3343000 |
0.4554000 |
0.2773000 |
0.2566000 |
0.3602000 |
36.14 |
70.0 |
27 |
459.04 |
4.23 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
6257856 |
rs2294713 |
G |
A |
. |
PASS |
0.7481000 |
0.4841000 |
0.6607000 |
0.4583000 |
0.3896000 |
0.5657000 |
37.0 |
70.0 |
17 |
208.75 |
6.72 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
6269340 |
rs4908865 |
A |
G |
. |
PASS |
0.3011000 |
0.0793000 |
0.0813000 |
0.0755000 |
0.1125000 |
0.1440000 |
37.0 |
70.0 |
84 |
1000.00 |
3.17 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
6272137 |
rs709208 |
A |
G |
. |
PASS |
0.4637000 |
0.2320000 |
0.2143000 |
0.3082000 |
0.3487000 |
0.3277000 |
37.0 |
70.0 |
54 |
1000.00 |
3.27 |
94.44 |
0 |
100.00 |
1/1 |
| chr1 |
6273206 |
rs55823245 |
C |
T |
. |
PASS |
0.0015000 |
0.0086000 |
0.0000000 |
0.0258000 |
0.0133000 |
0.0093850 |
37.0 |
70.0 |
57 |
756.68 |
19.98 |
40.35 |
0 |
40.35 |
0/1 |
| chr1 |
6278414 |
rs709209 |
A |
G |
. |
PASS |
0.7405000 |
0.2939000 |
0.2639000 |
0.3469000 |
0.3998000 |
0.4371000 |
37.0 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6279370 |
rs846111 |
G |
C |
. |
PASS |
0.0227000 |
0.1758000 |
0.1756000 |
0.2604000 |
0.2791000 |
0.1725000 |
36.29 |
70.0 |
59 |
1000.00 |
4.19 |
57.63 |
0 |
57.63 |
0/1 |
| chr1 |
6453520 |
rs76483502 |
C |
CG |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.68 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6530965 |
rs112662590,rs111312565 |
C |
CG |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.32 |
70.0 |
61 |
1000.00 |
1.53 |
98.36 |
0 |
98.36 |
1/1 |
| chr1 |
6579607 |
rs1556035 |
C |
T |
. |
PASS |
0.4531000 |
0.8660000 |
0.8075000 |
0.8797000 |
0.8558000 |
0.7460000 |
37.0 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6585804 |
rs13513 |
C |
T |
. |
PASS |
0.5038000 |
0.8602000 |
0.7917000 |
0.8598000 |
0.8057000 |
0.7416000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6586070 |
rs7548042 |
C |
T |
. |
PASS |
0.9266000 |
0.9914000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9794000 |
36.5 |
70.0 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6591937 |
rs932112 |
T |
C |
. |
PASS |
0.6225000 |
0.8617000 |
0.8234000 |
0.8588000 |
0.8057000 |
0.7794000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6609559 |
rs11122091 |
C |
A |
. |
PASS |
0.4107000 |
0.8429000 |
0.7937000 |
0.8569000 |
0.8221000 |
0.7177000 |
36.62 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6614391 |
rs6693391 |
A |
C |
. |
PASS |
0.8722000 |
0.9841000 |
0.9692000 |
0.9950000 |
0.9969000 |
0.9563000 |
36.76 |
70.0 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6614415 |
rs6693400 |
A |
G |
. |
PASS |
0.9281000 |
0.9914000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9798000 |
36.62 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6614535 |
rs4908923 |
G |
A |
. |
PASS |
0.4266000 |
0.8473000 |
0.7927000 |
0.8608000 |
0.8180000 |
0.7222000 |
36.71 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6614653 |
rs4908924 |
C |
G |
. |
PASS |
0.5726000 |
0.8516000 |
0.7927000 |
0.8628000 |
0.8180000 |
0.7618000 |
37.0 |
70.0 |
18 |
712.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6615690 |
rs925745 |
A |
G |
. |
PASS |
0.4289000 |
0.8545000 |
0.7907000 |
0.8648000 |
0.8200000 |
0.7246000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6615695 |
rs925744 |
C |
T |
. |
PASS |
0.4871000 |
0.8487000 |
0.7907000 |
0.8618000 |
0.8190000 |
0.7384000 |
35.11 |
70.0 |
19 |
722.12 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6631319 |
rs11122096 |
G |
A |
. |
PASS |
0.6717000 |
0.9611000 |
0.9385000 |
0.9801000 |
0.9847000 |
0.8886000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6631352 |
rs34514006 |
TC |
T |
. |
PASS |
0.6793000 |
0.9611000 |
0.9712000 |
0.9801000 |
0.9847000 |
0.8972000 |
35.7 |
70.0 |
23 |
885.65 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6635231 |
rs10864628 |
A |
G |
. |
PASS |
0.7216000 |
0.9841000 |
1.0000000 |
0.9990000 |
0.9959000 |
0.9233000 |
36.36 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6636461 |
rs17492553 |
C |
T |
. |
PASS |
0.2322000 |
0.4625000 |
0.3472000 |
0.5219000 |
0.3569000 |
0.3698000 |
36.55 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6641348 |
rs72634778 |
G |
A |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0129000 |
0.0041000 |
0.0037939 |
37.0 |
69.29 |
65 |
941.45 |
3.52 |
43.08 |
0 |
43.08 |
0/1 |
| chr1 |
6645867 |
rs6682920 |
G |
A |
. |
PASS |
0.2557000 |
0.3314000 |
0.3839000 |
0.3221000 |
0.4836000 |
0.3498000 |
37.0 |
70.0 |
18 |
372.82 |
8.08 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
6646959 |
rs3833475,rs374401991 |
GCCTGCCTTC |
G |
. |
PASS |
0.6513000 |
0.6037000 |
0.5843000 |
0.7008000 |
0.8027000 |
0.6707000 |
36.6 |
70.0 |
15 |
533.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6659505 |
rs2232460 |
G |
A |
. |
PASS |
0.2670000 |
0.3127000 |
0.3800000 |
0.3171000 |
0.4785000 |
0.3474000 |
37.0 |
70.0 |
65 |
816.15 |
8.00 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
6662913 |
rs6674407 |
G |
A |
. |
PASS |
0.1339000 |
0.3040000 |
0.3810000 |
0.3171000 |
0.4877000 |
0.3131000 |
37.0 |
68.33 |
22 |
402.55 |
6.06 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
6679848 |
rs2072948 |
C |
T |
. |
PASS |
0.0900000 |
0.2435000 |
0.1548000 |
0.3539000 |
0.2965000 |
0.2177000 |
35.4 |
70.0 |
43 |
1000.00 |
10.23 |
69.77 |
0 |
69.77 |
0/1 |
| chr1 |
6681744 |
rs3747994 |
C |
T |
. |
PASS |
0.7360000 |
0.6167000 |
0.5784000 |
0.7018000 |
0.8067000 |
0.6947000 |
37.0 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6685442 |
rs12746591 |
A |
G |
. |
PASS |
0.7110000 |
0.6138000 |
0.5813000 |
0.6948000 |
0.7986000 |
0.6853000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6693097 |
rs3174820 |
A |
G |
. |
PASS |
0.3086000 |
0.3429000 |
0.3889000 |
0.3320000 |
0.4939000 |
0.3704000 |
37.0 |
69.31 |
67 |
1000.00 |
3.21 |
58.21 |
0 |
58.21 |
0/1 |
| chr1 |
6694207 |
rs12727844 |
A |
G |
. |
PASS |
0.3064000 |
0.3429000 |
0.3879000 |
0.3310000 |
0.4898000 |
0.3686000 |
37.0 |
70.0 |
23 |
357.78 |
3.95 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
6695802 |
rs6577583 |
A |
G |
. |
PASS |
0.7330000 |
0.6182000 |
0.6359000 |
0.6968000 |
0.7955000 |
0.7025000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6704635 |
rs200458 |
A |
G |
. |
PASS |
0.8676000 |
0.9625000 |
0.5704000 |
0.9245000 |
0.8712000 |
0.8331000 |
36.27 |
69.86 |
147 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
6713114 |
rs2235564 |
C |
T |
. |
PASS |
0.4107000 |
0.3213000 |
0.1776000 |
0.3718000 |
0.3139000 |
0.3247000 |
37.0 |
70.0 |
16 |
378.84 |
4.55 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
6761702 |
rs3761925 |
C |
T |
. |
PASS |
0.1831000 |
0.3156000 |
0.3998000 |
0.2893000 |
0.4826000 |
0.3249000 |
37.0 |
70.0 |
15 |
340.08 |
13.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
6866978 |
rs660880 |
G |
A |
. |
PASS |
0.1490000 |
0.6354000 |
0.1111000 |
0.5288000 |
0.2883000 |
0.3123000 |
37.0 |
68.67 |
24 |
521.84 |
3.33 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
7151479 |
rs72640073 |
T |
C |
. |
PASS |
0.0174000 |
0.1988000 |
0.0268000 |
0.2038000 |
0.1483000 |
0.1074000 |
37.0 |
70.0 |
41 |
679.53 |
1.95 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
7326201 |
rs7517429 |
A |
G |
. |
PASS |
0.9970000 |
0.9265000 |
0.8373000 |
0.9056000 |
0.8783000 |
0.9135000 |
35.83 |
69.51 |
83 |
1000.00 |
3.53 |
49.40 |
0 |
49.40 |
0/1 |
| chr1 |
7527996 |
rs1201529 |
T |
C |
. |
PASS |
0.6520000 |
0.4035000 |
0.2768000 |
0.5746000 |
0.3323000 |
0.4641000 |
36.14 |
70.0 |
40 |
419.90 |
3.57 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
7707287 |
rs4908660 |
G |
A |
. |
PASS |
0.8858000 |
0.7464000 |
0.6458000 |
0.6988000 |
0.7372000 |
0.7516000 |
34.49 |
69.07 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7723957 |
rs12128526 |
G |
A |
. |
PASS |
0.3873000 |
0.4539000 |
0.3313000 |
0.4304000 |
0.4192000 |
0.4002000 |
36.5 |
70.0 |
43 |
828.58 |
3.29 |
55.81 |
0 |
55.81 |
0/1 |
| chr1 |
7725284 |
rs4908671 |
C |
A |
. |
PASS |
0.1384000 |
0.1988000 |
0.0903000 |
0.3678000 |
0.3691000 |
0.2282000 |
36.0 |
69.44 |
84 |
1000.00 |
0.79 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
7725414 |
rs4908672 |
C |
T |
. |
PASS |
0.2231000 |
0.2032000 |
0.0913000 |
0.3678000 |
0.3691000 |
0.2514000 |
37.0 |
70.0 |
13 |
53.71 |
0.00 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
7737799 |
rs3011926 |
A |
G |
. |
PASS |
0.5855000 |
0.5375000 |
0.6587000 |
0.5686000 |
0.5930000 |
0.5917000 |
36.78 |
70.0 |
129 |
1000.00 |
1.12 |
41.86 |
0 |
41.86 |
0/1 |
| chr1 |
7845695 |
rs228729 |
T |
C |
. |
PASS |
0.7776000 |
0.7565000 |
0.7619000 |
0.6620000 |
0.6554000 |
0.7244000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7861304 |
rs707465 |
T |
C |
. |
PASS |
0.5832000 |
0.2622000 |
0.5288000 |
0.3748000 |
0.3834000 |
0.4469000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7869915 |
rs228668 |
G |
C |
. |
PASS |
0.9796000 |
0.9654000 |
1.0000000 |
0.9513000 |
0.9806000 |
0.9762000 |
37.0 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7870048 |
rs228669 |
T |
C |
. |
PASS |
0.9720000 |
0.7608000 |
0.7232000 |
0.9324000 |
0.9427000 |
0.8790000 |
36.61 |
69.78 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7887248 |
rs2859387 |
G |
A |
. |
PASS |
0.5333000 |
0.4597000 |
0.8026000 |
0.3718000 |
0.3896000 |
0.5168000 |
37.0 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7887493 |
rs228696 |
T |
C |
. |
PASS |
0.9758000 |
0.9654000 |
1.0000000 |
0.9513000 |
0.9806000 |
0.9752000 |
36.61 |
70.0 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7889941 |
rs2640908 |
C |
T |
. |
PASS |
0.3154000 |
0.1599000 |
0.4851000 |
0.1978000 |
0.3149000 |
0.3043000 |
36.28 |
69.2 |
51 |
1000.00 |
1.96 |
98.04 |
0 |
98.04 |
1/1 |
| chr1 |
7890010 |
rs11576985 |
A |
G |
. |
PASS |
0.0015000 |
0.0029000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0007987 |
37.0 |
70.0 |
31 |
83.08 |
24.52 |
16.13 |
0 |
16.13 |
0/1 |
| chr1 |
7890013 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
32 |
247.14 |
11.81 |
28.12 |
0 |
28.12 |
0/1 |
| chr1 |
7890016 |
rs12749159 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
29 |
256.18 |
26.05 |
31.03 |
0 |
31.03 |
0/1 |
| chr1 |
7890024 |
rs201662971 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
22 |
440.17 |
2.10 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
7890026 |
rs199947375 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
26 |
474.06 |
16.48 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
7890053 |
rs1776342 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
33 |
77.05 |
4.85 |
15.15 |
0 |
15.15 |
0/1 |
| chr1 |
7890055 |
rs11121034 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
34 |
69.90 |
2.35 |
14.71 |
0 |
14.71 |
0/1 |
| chr1 |
7890264 |
rs1773135 |
A |
G |
. |
PASS |
0.6271000 |
0.7435000 |
0.8522000 |
0.6650000 |
0.6513000 |
0.7009000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7907971 |
rs707473 |
C |
A |
. |
PASS |
0.2708000 |
0.1499000 |
0.3720000 |
0.1759000 |
0.2638000 |
0.2540000 |
36.37 |
70.0 |
19 |
741.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7913430 |
rs228648 |
G |
A |
. |
PASS |
0.4259000 |
0.4092000 |
0.3522000 |
0.5706000 |
0.6339000 |
0.4784000 |
36.48 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7928181 |
rs2066980 |
G |
A |
. |
PASS |
0.5726000 |
0.4568000 |
0.4752000 |
0.6600000 |
0.5890000 |
0.5577000 |
36.52 |
70.0 |
99 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7928191 |
rs3034084 |
CA |
C |
. |
PASS |
0.8510000 |
0.9236000 |
0.9663000 |
0.9006000 |
0.9141000 |
0.9065000 |
36.18 |
70.0 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
7998963 |
rs226476 |
T |
G |
. |
PASS |
0.9992000 |
0.9813000 |
1.0000000 |
0.9602000 |
0.9939000 |
0.9880000 |
36.2 |
70.0 |
15 |
574.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
8361312 |
rs12027657 |
A |
T |
. |
PASS |
0.3351000 |
0.5965000 |
0.6865000 |
0.6740000 |
0.5184000 |
0.5459000 |
36.69 |
68.9 |
289 |
1000.00 |
3.95 |
39.79 |
0 |
39.79 |
0/1 |
| chr1 |
8361340 |
rs70990555,rs139409971 |
TGGGATTCATCAATATCCTGTAGCTGGGC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.03 |
68.7 |
253 |
1000.00 |
10.57 |
45.06 |
0 |
45.06 |
0/1 |
| chr1 |
8361620 |
rs35288526 |
T |
C |
. |
PASS |
0.3336000 |
0.5965000 |
0.6806000 |
0.6740000 |
0.5174000 |
0.5441000 |
35.82 |
69.48 |
280 |
1000.00 |
5.71 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
8390384 |
rs56125713 |
G |
C |
. |
PASS |
0.0416000 |
0.1225000 |
0.0575000 |
0.1759000 |
0.3149000 |
0.1364000 |
36.73 |
70.0 |
108 |
1000.00 |
1.85 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
8390495 |
rs1058619 |
A |
G |
. |
PASS |
0.7368000 |
0.7824000 |
0.8482000 |
0.7366000 |
0.7924000 |
0.7764000 |
36.23 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
8395441 |
rs2305016 |
T |
C |
. |
PASS |
0.2761000 |
0.3977000 |
0.2857000 |
0.5785000 |
0.3916000 |
0.3782000 |
36.43 |
70.0 |
34 |
730.36 |
6.16 |
61.76 |
0 |
61.76 |
0/1 |
| chr1 |
8395560 |
rs7535752 |
G |
T |
. |
PASS |
0.0961000 |
0.1859000 |
0.0228000 |
0.1839000 |
0.3160000 |
0.1544000 |
36.71 |
69.51 |
123 |
1000.00 |
3.25 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
8404093 |
rs1055236 |
C |
T |
. |
PASS |
0.1051000 |
0.1902000 |
0.1260000 |
0.3062000 |
0.2362000 |
0.1871000 |
36.03 |
70.0 |
65 |
1000.00 |
6.57 |
56.92 |
0 |
56.92 |
0/1 |
| chr1 |
8415418 |
rs2289733 |
G |
A |
. |
PASS |
0.3222000 |
0.1902000 |
0.0575000 |
0.2008000 |
0.3609000 |
0.2338000 |
37.0 |
70.0 |
15 |
214.77 |
9.52 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
8418644 |
rs11121172 |
C |
A |
. |
PASS |
0.8638000 |
0.7795000 |
0.8978000 |
0.6690000 |
0.7495000 |
0.7975000 |
36.22 |
70.0 |
98 |
1000.00 |
1.51 |
46.94 |
0 |
46.94 |
0/1 |
| chr1 |
8418650 |
rs1058766 |
T |
C |
. |
PASS |
0.8691000 |
0.7795000 |
0.8998000 |
0.6710000 |
0.7515000 |
0.8001000 |
36.49 |
70.0 |
102 |
1000.00 |
1.46 |
46.08 |
0 |
46.08 |
0/1 |
| chr1 |
8421203 |
rs13596 |
T |
C |
. |
PASS |
0.8411000 |
0.7925000 |
0.9206000 |
0.6819000 |
0.7464000 |
0.7999000 |
37.0 |
70.0 |
63 |
1000.00 |
4.46 |
50.79 |
0 |
50.79 |
0/1 |
| chr1 |
8422676 |
rs2252865 |
T |
C |
. |
PASS |
0.8381000 |
0.7839000 |
0.9196000 |
0.6819000 |
0.7485000 |
0.7981000 |
37.0 |
70.0 |
36 |
443.96 |
18.25 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
8425798 |
rs3765972 |
C |
T |
. |
PASS |
0.4092000 |
0.1945000 |
0.0575000 |
0.1958000 |
0.3098000 |
0.2464000 |
37.0 |
70.0 |
21 |
238.48 |
3.57 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
8425900 |
rs3753275 |
T |
C |
. |
PASS |
0.4130000 |
0.1945000 |
0.0575000 |
0.1978000 |
0.3119000 |
0.2482000 |
36.58 |
70.0 |
127 |
1000.00 |
0.25 |
44.88 |
0 |
44.88 |
0/1 |
| chr1 |
8557691 |
rs7530745 |
A |
C |
. |
PASS |
0.8487000 |
0.6225000 |
0.8323000 |
0.5845000 |
0.5072000 |
0.6943000 |
34.0 |
70.0 |
14 |
76.31 |
28.57 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
8716543 |
rs3737670 |
G |
C |
. |
PASS |
0.6150000 |
0.6254000 |
0.8194000 |
0.5785000 |
0.4519000 |
0.6184000 |
35.8 |
69.4 |
25 |
293.83 |
24.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
8925331 |
rs72641527 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.33 |
70.0 |
87 |
1000.00 |
6.32 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
8926285 |
rs3831913 |
A |
AG |
. |
PASS |
0.1800000 |
0.3948000 |
0.1706000 |
0.5606000 |
0.3569000 |
0.3189000 |
35.15 |
70.0 |
28 |
386.67 |
19.78 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
8930369 |
rs2781060 |
T |
C |
. |
PASS |
0.6967000 |
0.8516000 |
0.9157000 |
0.8111000 |
0.6810000 |
0.7821000 |
35.67 |
70.0 |
13 |
292.32 |
0.00 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
8930385 |
rs2765511 |
G |
A |
. |
PASS |
0.6967000 |
0.8516000 |
0.9137000 |
0.8111000 |
0.6810000 |
0.7817000 |
36.14 |
70.0 |
19 |
483.12 |
11.28 |
73.68 |
0 |
73.68 |
0/1 |
| chr1 |
9006104 |
rs5772343 |
T |
TC |
. |
PASS |
0.1014000 |
0.3833000 |
0.2510000 |
0.4254000 |
0.3476000 |
0.2837000 |
37.0 |
70.0 |
12 |
166.45 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
9009214 |
rs2274326 |
C |
T |
. |
PASS |
0.0877000 |
0.3804000 |
0.2341000 |
0.4155000 |
0.3282000 |
0.2706000 |
34.6 |
70.0 |
12 |
128.25 |
10.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
9009406 |
rs2274327 |
C |
T |
. |
PASS |
0.0809000 |
0.3775000 |
0.2431000 |
0.4155000 |
0.3282000 |
0.2702000 |
36.49 |
70.0 |
141 |
1000.00 |
2.17 |
49.65 |
0 |
49.65 |
0/1 |
| chr1 |
9009444 |
rs2274328 |
A |
C |
. |
PASS |
0.5598000 |
0.4712000 |
0.4127000 |
0.5358000 |
0.5000000 |
0.5014000 |
36.5 |
69.83 |
206 |
1000.00 |
1.51 |
58.74 |
0 |
58.74 |
0/1 |
| chr1 |
9034815 |
rs70985563,rs35753212 |
C |
CAGA |
. |
PASS |
0.9523000 |
0.5605000 |
0.8165000 |
0.5060000 |
0.7832000 |
0.7480000 |
36.0 |
70.0 |
36 |
967.13 |
11.11 |
75.00 |
0 |
77.78 |
0/1 |
| chr1 |
9063602 |
rs4908804 |
G |
C |
. |
PASS |
0.3260000 |
0.4957000 |
0.7063000 |
0.4652000 |
0.5787000 |
0.5034000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
9063646 |
rs4908805 |
T |
C |
. |
PASS |
0.4077000 |
0.4424000 |
0.6429000 |
0.3638000 |
0.4980000 |
0.4687000 |
37.0 |
70.0 |
10 |
146.28 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
9064838 |
rs72644324 |
G |
A |
. |
PASS |
0.0000000 |
0.0058000 |
0.0000000 |
0.0020000 |
0.0020000 |
0.0015974 |
36.52 |
70.0 |
105 |
1000.00 |
3.62 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
9074932 |
rs1556757 |
G |
A |
. |
PASS |
0.4826000 |
0.5317000 |
0.5437000 |
0.3579000 |
0.3282000 |
0.4465000 |
36.17 |
70.0 |
66 |
956.19 |
3.97 |
43.94 |
0 |
43.94 |
0/1 |
| chr1 |
9084924 |
rs2027222 |
T |
C |
. |
PASS |
0.7859000 |
0.8213000 |
0.9563000 |
0.7326000 |
0.7996000 |
0.8171000 |
37.0 |
70.0 |
13 |
95.48 |
0.00 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
9165685 |
rs72637739 |
G |
A |
. |
PASS |
0.0113000 |
0.2651000 |
0.1905000 |
0.2147000 |
0.1319000 |
0.1470000 |
36.81 |
70.0 |
132 |
1000.00 |
10.02 |
46.97 |
0 |
46.97 |
0/1 |
| chr1 |
9165818 |
rs12753196 |
C |
A |
. |
PASS |
0.0840000 |
0.0836000 |
0.0417000 |
0.1332000 |
0.1135000 |
0.0911000 |
37.0 |
70.0 |
14 |
297.17 |
15.87 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
9171238 |
rs12135666 |
G |
T |
. |
PASS |
0.0113000 |
0.2680000 |
0.1915000 |
0.2137000 |
0.1319000 |
0.1474000 |
36.14 |
69.29 |
54 |
946.41 |
9.26 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
9299947 |
rs2268176 |
T |
G |
. |
PASS |
0.1142000 |
0.2637000 |
0.3998000 |
0.2406000 |
0.1319000 |
0.2212000 |
37.0 |
70.0 |
11 |
97.35 |
22.73 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
9305445 |
rs34603401 |
A |
C |
. |
PASS |
0.0053000 |
0.1023000 |
0.0010000 |
0.1630000 |
0.1411000 |
0.0761000 |
36.28 |
70.0 |
100 |
1000.00 |
8.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
9307033 |
rs7524046 |
G |
A |
. |
PASS |
0.1074000 |
0.2622000 |
0.4038000 |
0.2445000 |
0.1411000 |
0.2226000 |
36.84 |
69.74 |
160 |
1000.00 |
5.15 |
48.12 |
0 |
48.12 |
0/1 |
| chr1 |
9307138 |
rs11121350 |
T |
C |
. |
PASS |
0.2867000 |
0.2810000 |
0.4196000 |
0.2445000 |
0.1411000 |
0.2758000 |
36.17 |
70.0 |
183 |
1000.00 |
0.60 |
47.54 |
0 |
47.54 |
0/1 |
| chr1 |
9307230 |
rs12032814 |
T |
A |
. |
PASS |
0.2088000 |
0.2695000 |
0.4067000 |
0.2435000 |
0.1411000 |
0.2508000 |
35.98 |
69.57 |
94 |
1000.00 |
8.51 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
9307308 |
rs56110957 |
T |
TG |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
14 |
533.71 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
9309746 |
rs732950 |
G |
T |
. |
PASS |
0.6460000 |
0.5288000 |
0.4792000 |
0.3907000 |
0.3160000 |
0.4804000 |
36.72 |
69.77 |
180 |
1000.00 |
2.49 |
48.33 |
0 |
48.33 |
0/1 |
| chr1 |
9323910 |
rs6688832 |
G |
A |
. |
PASS |
0.4932000 |
0.3732000 |
0.4812000 |
0.2485000 |
0.3119000 |
0.3896000 |
36.76 |
70.0 |
92 |
1000.00 |
4.35 |
54.35 |
0 |
54.35 |
0/1 |
| chr1 |
9324213 |
rs17368528 |
C |
T |
. |
PASS |
0.0053000 |
0.1138000 |
0.0685000 |
0.1302000 |
0.2035000 |
0.0968000 |
36.6 |
70.0 |
87 |
946.79 |
3.22 |
34.48 |
0 |
34.48 |
0/1 |
| chr1 |
9324571 |
rs9434742 |
T |
C |
. |
PASS |
0.4970000 |
0.4207000 |
0.1657000 |
0.4115000 |
0.4990000 |
0.4030000 |
36.61 |
70.0 |
61 |
1000.00 |
4.87 |
50.82 |
0 |
50.82 |
0/1 |
| chr1 |
9324670 |
rs9434743 |
A |
G |
. |
PASS |
0.5106000 |
0.4280000 |
0.1538000 |
0.4016000 |
0.4939000 |
0.4022000 |
36.65 |
70.0 |
123 |
1000.00 |
5.87 |
56.10 |
0 |
56.10 |
0/1 |
| chr1 |
9599823 |
rs148840119 |
A |
G |
. |
PASS |
0.5386000 |
0.1700000 |
0.3105000 |
0.1720000 |
0.1840000 |
0.2987000 |
37.0 |
69.9 |
46 |
706.26 |
1.24 |
45.65 |
0 |
45.65 |
0/1 |
| chr1 |
9627521 |
rs6698575 |
A |
G |
. |
PASS |
0.4592000 |
0.1671000 |
0.3115000 |
0.1750000 |
0.1840000 |
0.2782000 |
37.0 |
70.0 |
42 |
425.90 |
23.81 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
9642329 |
rs56026893 |
C |
T |
. |
PASS |
0.1301000 |
0.0922000 |
0.2867000 |
0.1720000 |
0.1677000 |
0.1721000 |
37.0 |
70.0 |
19 |
411.58 |
14.04 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
9658465 |
rs9430181 |
T |
G |
. |
PASS |
0.7057000 |
0.8948000 |
0.7212000 |
0.8141000 |
0.7924000 |
0.7738000 |
36.25 |
70.0 |
35 |
514.35 |
12.86 |
45.71 |
0 |
45.71 |
0/1 |
| chr1 |
9658707 |
rs9430182 |
G |
A |
. |
PASS |
0.6846000 |
0.7767000 |
0.6964000 |
0.8121000 |
0.7924000 |
0.7464000 |
35.97 |
70.0 |
122 |
1000.00 |
3.62 |
47.54 |
0 |
47.54 |
0/1 |
| chr1 |
9658809 |
rs9430183 |
A |
G |
. |
PASS |
0.6853000 |
0.8934000 |
0.7222000 |
0.8141000 |
0.7924000 |
0.7684000 |
37.0 |
70.0 |
28 |
384.49 |
28.57 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
9661061 |
rs9430184 |
A |
G |
. |
PASS |
0.6891000 |
0.8934000 |
0.7212000 |
0.8141000 |
0.7924000 |
0.7692000 |
37.0 |
70.0 |
11 |
268.58 |
6.82 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
9670834 |
rs4926472 |
C |
T |
. |
PASS |
0.5008000 |
0.7651000 |
0.6468000 |
0.8022000 |
0.7249000 |
0.6711000 |
36.4 |
69.33 |
130 |
1000.00 |
4.62 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
9672091 |
rs4073293 |
G |
A |
. |
PASS |
0.5045000 |
0.7651000 |
0.6458000 |
0.8022000 |
0.7249000 |
0.6719000 |
37.0 |
70.0 |
10 |
62.74 |
20.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
9777451 |
rs34287026 |
G |
GGA |
. |
PASS |
0.0408000 |
0.2896000 |
0.0030000 |
0.4662000 |
0.1493000 |
0.1743000 |
37.0 |
70.0 |
11 |
408.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
9780736 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
30.33 |
70.0 |
37 |
167.91 |
118.92 |
24.32 |
0 |
24.32 |
0/1 |
| chr1 |
9780738 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.2 |
70.0 |
31 |
54.92 |
148.39 |
16.13 |
0 |
16.13 |
0/1 |
| chr1 |
9780743 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
70.0 |
35 |
251.72 |
131.43 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
9780749 |
. |
G |
GGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
36 |
313.81 |
122.22 |
27.78 |
0 |
33.33 |
0/1 |
| chr1 |
9781412 |
rs12735071 |
C |
G |
. |
PASS |
0.0439000 |
0.2882000 |
0.0020000 |
0.4911000 |
0.1421000 |
0.1783000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
9782556 |
rs11589267 |
C |
T |
. |
PASS |
0.0424000 |
0.2781000 |
0.0000000 |
0.4543000 |
0.1258000 |
0.1655000 |
36.27 |
70.0 |
99 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
9796038 |
rs72633875 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
35.85 |
69.23 |
112 |
1000.00 |
3.02 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
9804719 |
rs72633876 |
G |
A |
. |
PASS |
0.0212000 |
0.0029000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0061901 |
36.43 |
70.0 |
47 |
691.23 |
1.42 |
44.68 |
0 |
44.68 |
0/1 |
| chr1 |
9816620 |
rs6680090 |
T |
C |
. |
PASS |
0.9962000 |
0.9625000 |
0.9990000 |
0.9543000 |
0.9888000 |
0.9822000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
9883878 |
rs6686034 |
T |
C |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
10068175 |
rs11578833 |
G |
A |
. |
PASS |
0.0023000 |
0.0922000 |
0.0714000 |
0.0169000 |
0.0736000 |
0.0455000 |
36.45 |
70.0 |
38 |
760.09 |
2.39 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
10189532 |
rs72638958 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.08 |
70.0 |
35 |
393.20 |
20.22 |
37.14 |
0 |
37.14 |
0/1 |
| chr1 |
10190884 |
rs2295294 |
A |
T |
. |
PASS |
0.6778000 |
0.5288000 |
0.3869000 |
0.3917000 |
0.3998000 |
0.4868000 |
36.34 |
69.56 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
10318652 |
rs12402052 |
C |
G |
. |
PASS |
0.0560000 |
0.3199000 |
0.2887000 |
0.3052000 |
0.2638000 |
0.2300000 |
36.33 |
70.0 |
68 |
1000.00 |
8.82 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
10319049 |
rs4845930 |
G |
A |
. |
PASS |
0.6952000 |
0.5144000 |
0.3601000 |
0.4831000 |
0.4744000 |
0.5170000 |
35.35 |
70.0 |
96 |
1000.00 |
6.13 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
10322054 |
rs4846209 |
G |
A |
. |
PASS |
0.3411000 |
0.3833000 |
0.3472000 |
0.3579000 |
0.2812000 |
0.3399000 |
35.8 |
70.0 |
72 |
967.90 |
5.56 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
10322153 |
rs4846210 |
A |
G |
. |
PASS |
0.0598000 |
0.3199000 |
0.2887000 |
0.3052000 |
0.2638000 |
0.2310000 |
35.5 |
70.0 |
30 |
199.38 |
1.67 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
10327407 |
rs12141246 |
A |
T |
. |
PASS |
0.4486000 |
0.4006000 |
0.3919000 |
0.3608000 |
0.2832000 |
0.3806000 |
37.0 |
70.0 |
16 |
165.85 |
16.67 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
10328338 |
rs1339458 |
C |
T |
. |
PASS |
0.1452000 |
0.3228000 |
0.2887000 |
0.3052000 |
0.2638000 |
0.2540000 |
37.0 |
70.0 |
69 |
1000.00 |
1.19 |
49.28 |
0 |
49.28 |
0/1 |
| chr1 |
10342629 |
rs3748576 |
G |
A |
. |
PASS |
0.9818000 |
0.7334000 |
0.5030000 |
0.6213000 |
0.6442000 |
0.7127000 |
37.0 |
70.0 |
18 |
331.05 |
2.22 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
10355834 |
rs3753037 |
C |
T |
. |
PASS |
0.1823000 |
0.3256000 |
0.2887000 |
0.3052000 |
0.2628000 |
0.2640000 |
36.64 |
70.0 |
67 |
1000.00 |
4.34 |
49.25 |
0 |
49.25 |
0/1 |
| chr1 |
10357406 |
rs3748577 |
A |
G |
. |
PASS |
0.3116000 |
0.3732000 |
0.3472000 |
0.3340000 |
0.2771000 |
0.3251000 |
37.0 |
70.0 |
37 |
816.88 |
7.99 |
62.16 |
0 |
62.16 |
0/1 |
| chr1 |
10384176 |
rs3831405,rs200163420 |
C |
CTTGAAA |
. |
PASS |
0.0575000 |
0.3199000 |
0.2877000 |
0.3091000 |
0.2720000 |
0.2326000 |
36.33 |
70.0 |
26 |
368.93 |
2.56 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
10394536 |
rs2276100 |
C |
G |
. |
PASS |
0.3351000 |
0.3732000 |
0.3462000 |
0.3380000 |
0.2873000 |
0.3339000 |
37.0 |
70.0 |
26 |
302.82 |
16.92 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
10420918 |
rs3748578 |
G |
A |
. |
PASS |
0.2761000 |
0.3329000 |
0.2817000 |
0.3091000 |
0.2720000 |
0.2909000 |
37.0 |
70.0 |
16 |
211.76 |
5.36 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
10420937 |
rs3748579 |
C |
T |
. |
PASS |
0.3351000 |
0.3761000 |
0.3462000 |
0.3380000 |
0.2863000 |
0.3341000 |
37.0 |
70.0 |
20 |
325.03 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
10425117 |
rs34161257 |
AT |
A |
. |
PASS |
0.7103000 |
0.5115000 |
0.3591000 |
0.4861000 |
0.4898000 |
0.5240000 |
34.47 |
70.0 |
24 |
474.26 |
13.33 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
10431158 |
rs17411502 |
T |
C |
. |
PASS |
0.1233000 |
0.3213000 |
0.2817000 |
0.3091000 |
0.2720000 |
0.2490000 |
35.91 |
70.0 |
29 |
327.70 |
28.84 |
37.93 |
0 |
37.93 |
0/1 |
| chr1 |
10435170 |
rs11121551 |
T |
C |
. |
PASS |
0.3351000 |
0.3833000 |
0.3472000 |
0.3628000 |
0.2904000 |
0.3411000 |
36.25 |
70.0 |
40 |
503.45 |
7.50 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
10435324 |
rs11121552 |
C |
A |
. |
PASS |
0.0575000 |
0.3199000 |
0.2827000 |
0.3091000 |
0.2720000 |
0.2316000 |
35.91 |
70.0 |
48 |
713.84 |
7.20 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
10459779 |
rs3737155 |
G |
A |
. |
PASS |
0.3434000 |
0.3732000 |
0.3403000 |
0.3380000 |
0.2853000 |
0.3345000 |
36.1 |
70.0 |
87 |
1000.00 |
12.36 |
45.98 |
0 |
45.98 |
0/1 |
| chr1 |
10460485 |
rs1049887 |
T |
C |
. |
PASS |
0.0658000 |
0.3199000 |
0.2817000 |
0.3111000 |
0.2710000 |
0.2338000 |
35.8 |
68.6 |
50 |
628.42 |
4.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
10473196 |
rs2229687 |
C |
T |
. |
PASS |
0.3457000 |
0.3732000 |
0.3403000 |
0.3380000 |
0.2853000 |
0.3351000 |
36.06 |
69.96 |
102 |
1000.00 |
3.92 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
10479635 |
rs2298570 |
C |
G |
. |
PASS |
0.7277000 |
0.5115000 |
0.3383000 |
0.4851000 |
0.4571000 |
0.5178000 |
36.54 |
70.0 |
67 |
835.73 |
15.15 |
38.81 |
0 |
38.81 |
0/1 |
| chr1 |
10479678 |
rs1889309 |
G |
A |
. |
PASS |
0.1286000 |
0.3213000 |
0.2808000 |
0.3091000 |
0.2710000 |
0.2500000 |
37.0 |
70.0 |
76 |
783.03 |
4.00 |
32.89 |
0 |
32.89 |
0/1 |
| chr1 |
10502307 |
rs33919161 |
AT |
A |
. |
PASS |
0.7784000 |
0.8156000 |
0.8641000 |
0.9314000 |
0.8262000 |
0.8409000 |
34.92 |
70.0 |
24 |
907.40 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
10511589 |
rs666103 |
T |
C |
. |
PASS |
0.8759000 |
0.8213000 |
0.8591000 |
0.9344000 |
0.8292000 |
0.8676000 |
36.88 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
10534915 |
rs72640366 |
A |
G |
. |
PASS |
0.0008000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0010000 |
0.0007987 |
37.0 |
70.0 |
20 |
366.81 |
14.55 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
10596341 |
rs12375 |
C |
T |
. |
PASS |
0.0658000 |
0.4265000 |
0.2004000 |
0.3141000 |
0.2464000 |
0.2280000 |
36.08 |
70.0 |
56 |
860.99 |
3.57 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
10596388 |
rs2480779 |
A |
G |
. |
PASS |
0.8290000 |
0.9841000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9527000 |
36.52 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
10702814 |
rs35619052 |
G |
A |
. |
PASS |
0.0113000 |
0.1599000 |
0.0030000 |
0.2843000 |
0.1820000 |
0.1184000 |
35.47 |
70.0 |
71 |
1000.00 |
3.60 |
66.20 |
0 |
66.20 |
0/1 |
| chr1 |
10704888 |
rs4845940 |
G |
C |
. |
PASS |
0.0499000 |
0.0346000 |
0.0258000 |
0.0288000 |
0.0174000 |
0.0323000 |
37.0 |
70.0 |
49 |
860.15 |
1.31 |
51.02 |
0 |
51.02 |
0/1 |
| chr1 |
10705110 |
rs4845941 |
G |
A |
. |
PASS |
0.0507000 |
0.0331000 |
0.0268000 |
0.0288000 |
0.0174000 |
0.0325000 |
36.39 |
70.0 |
109 |
1000.00 |
5.16 |
54.13 |
0 |
54.13 |
0/1 |
| chr1 |
10708142 |
rs778228 |
A |
G |
. |
PASS |
0.5431000 |
0.1945000 |
0.2421000 |
0.2068000 |
0.3517000 |
0.3293000 |
36.47 |
70.0 |
147 |
1000.00 |
2.70 |
46.26 |
0 |
46.26 |
0/1 |
| chr1 |
10710849 |
rs3215814 |
G |
GC |
. |
PASS |
0.5356000 |
0.1931000 |
0.2411000 |
0.2078000 |
0.3456000 |
0.3259000 |
37.0 |
70.0 |
26 |
291.40 |
9.23 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
10713765 |
rs284294 |
T |
C |
. |
PASS |
0.7194000 |
0.4539000 |
0.3095000 |
0.5646000 |
0.5971000 |
0.5451000 |
36.5 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
10714436 |
rs35604552 |
C |
T |
. |
PASS |
0.0522000 |
0.1499000 |
0.0030000 |
0.2684000 |
0.1779000 |
0.1238000 |
36.37 |
70.0 |
76 |
1000.00 |
2.63 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
10720601 |
rs28403334 |
G |
A |
. |
PASS |
0.0015000 |
0.0288000 |
0.0060000 |
0.0239000 |
0.0051000 |
0.0113820 |
37.0 |
70.0 |
62 |
950.49 |
2.07 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
10725498 |
rs284322 |
G |
A |
. |
PASS |
0.2216000 |
0.1412000 |
0.1498000 |
0.1690000 |
0.1912000 |
0.1795000 |
37.0 |
70.0 |
87 |
1000.00 |
1.15 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
10964170 |
rs12732550 |
A |
G |
. |
PASS |
0.6021000 |
0.4539000 |
0.4454000 |
0.4543000 |
0.4468000 |
0.4900000 |
36.53 |
70.0 |
129 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11080723 |
rs143130606 |
T |
TG |
. |
PASS |
0.9917000 |
0.9049000 |
0.9226000 |
0.8410000 |
0.8885000 |
0.9153000 |
36.4 |
70.0 |
20 |
772.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11087524 |
rs1782455 |
G |
A |
. |
PASS |
0.2973000 |
0.7983000 |
0.8651000 |
0.8400000 |
0.7965000 |
0.6875000 |
34.6 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11090916 |
rs12711521 |
C |
A |
. |
PASS |
0.1710000 |
0.7536000 |
0.6657000 |
0.8201000 |
0.6810000 |
0.5813000 |
36.44 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11095039 |
rs6695096 |
C |
T |
. |
PASS |
0.8548000 |
0.8415000 |
0.8661000 |
0.8390000 |
0.8057000 |
0.8425000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11104845 |
rs9430347 |
T |
C |
. |
PASS |
0.9077000 |
0.8401000 |
0.8839000 |
0.7962000 |
0.7802000 |
0.8462000 |
37.0 |
68.18 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11105106 |
rs2273345 |
C |
T |
. |
PASS |
0.1710000 |
0.7219000 |
0.7698000 |
0.7724000 |
0.6258000 |
0.5775000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11106935 |
rs72647262 |
G |
A |
. |
PASS |
0.0015000 |
0.0144000 |
0.0000000 |
0.0060000 |
0.0010000 |
0.0037939 |
36.08 |
70.0 |
118 |
1000.00 |
5.88 |
43.22 |
0 |
44.07 |
0/1 |
| chr1 |
11119899 |
rs7545802 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.54 |
69.74 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11126569 |
rs2791659 |
C |
A |
. |
PASS |
0.2035000 |
0.7550000 |
0.7837000 |
0.7416000 |
0.7219000 |
0.6060000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11126941 |
rs6701726 |
C |
T |
. |
PASS |
0.2035000 |
0.7550000 |
0.7837000 |
0.7416000 |
0.7219000 |
0.6060000 |
35.15 |
70.0 |
13 |
483.51 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11128001 |
rs2791657 |
A |
G |
. |
PASS |
0.2035000 |
0.7550000 |
0.7897000 |
0.7416000 |
0.7219000 |
0.6072000 |
36.7 |
70.0 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11128654 |
rs2791655 |
G |
A |
. |
PASS |
0.2020000 |
0.7406000 |
0.7827000 |
0.7227000 |
0.6738000 |
0.5903000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11129848 |
rs2791653 |
A |
G |
. |
PASS |
0.3699000 |
0.8314000 |
0.9415000 |
0.7674000 |
0.8701000 |
0.7264000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11132217 |
rs1130683 |
G |
A |
. |
PASS |
0.2035000 |
0.7550000 |
0.7837000 |
0.7416000 |
0.7229000 |
0.6062000 |
36.13 |
70.0 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11133956 |
. |
A |
AAAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
70.0 |
29 |
1000.00 |
16.33 |
65.52 |
0 |
100.00 |
0/1 |
| chr1 |
11134157 |
rs2748876 |
T |
G |
. |
PASS |
0.4977000 |
0.8415000 |
0.9415000 |
0.7694000 |
0.8701000 |
0.7620000 |
37.0 |
70.0 |
22 |
879.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11137778 |
rs2259886 |
C |
T |
. |
PASS |
0.0598000 |
0.7032000 |
0.7411000 |
0.7416000 |
0.6247000 |
0.5333000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11140620 |
rs201134081,rs70977543 |
AACAC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.42 |
69.97 |
32 |
1000.00 |
2.82 |
96.88 |
0 |
100.00 |
1/1 |
| chr1 |
11140626 |
rs61773686 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
69.97 |
33 |
1000.00 |
0.23 |
78.79 |
0 |
96.97 |
0/1 |
| chr1 |
11141187 |
rs2258621 |
C |
G |
. |
PASS |
0.5378000 |
0.8415000 |
0.9405000 |
0.7694000 |
0.8701000 |
0.7724000 |
36.42 |
70.0 |
165 |
1000.00 |
0.57 |
99.39 |
0 |
100.00 |
1/1 |
| chr1 |
11187618 |
. |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
94.95 |
40.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
11187893 |
rs1770344 |
T |
C |
. |
PASS |
0.9667000 |
0.9942000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9900000 |
36.76 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11205058 |
rs1057079 |
C |
T |
. |
PASS |
0.0635000 |
0.7017000 |
0.8165000 |
0.7356000 |
0.6217000 |
0.5475000 |
36.18 |
69.55 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11288633 |
rs4845986 |
G |
C |
. |
PASS |
0.2239000 |
0.7622000 |
0.8770000 |
0.7237000 |
0.7761000 |
0.6382000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11288758 |
rs1064261 |
G |
A |
. |
PASS |
0.3351000 |
0.8141000 |
0.9187000 |
0.7237000 |
0.8650000 |
0.7005000 |
36.37 |
70.0 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11292666 |
rs10864495 |
T |
A |
. |
PASS |
0.0923000 |
0.6902000 |
0.7917000 |
0.6988000 |
0.6278000 |
0.5423000 |
37.0 |
70.0 |
21 |
837.55 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11293147 |
rs11121702 |
C |
T |
. |
PASS |
0.3116000 |
0.8112000 |
0.9187000 |
0.7237000 |
0.8681000 |
0.6945000 |
35.4 |
69.85 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11293200 |
rs7541998 |
C |
T |
. |
PASS |
0.3124000 |
0.8112000 |
0.9187000 |
0.7237000 |
0.8681000 |
0.6947000 |
36.82 |
69.76 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11301714 |
rs1135172 |
A |
G |
. |
PASS |
0.2239000 |
0.7622000 |
0.8780000 |
0.7237000 |
0.7822000 |
0.6396000 |
36.6 |
69.83 |
121 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11451939 |
rs7511819 |
G |
A |
. |
PASS |
0.5303000 |
0.5043000 |
0.5169000 |
0.3867000 |
0.6258000 |
0.5138000 |
35.88 |
70.0 |
79 |
1000.00 |
3.64 |
40.51 |
0 |
40.51 |
0/1 |
| chr1 |
11561593 |
rs2817580 |
G |
A |
. |
PASS |
0.1430000 |
0.6311000 |
0.2718000 |
0.6590000 |
0.3047000 |
0.3718000 |
37.0 |
69.23 |
54 |
891.03 |
0.00 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
11574366 |
rs10864515 |
C |
G |
. |
PASS |
0.2602000 |
0.1801000 |
0.4484000 |
0.1302000 |
0.2556000 |
0.2600000 |
37.0 |
70.0 |
21 |
276.10 |
0.00 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
11575331 |
rs41274530 |
A |
G |
. |
PASS |
0.0809000 |
0.1715000 |
0.4435000 |
0.1302000 |
0.2536000 |
0.2101000 |
35.91 |
70.0 |
30 |
324.69 |
1.21 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
11575375 |
rs2594318 |
T |
A |
. |
PASS |
0.3124000 |
0.6441000 |
0.2758000 |
0.6511000 |
0.3129000 |
0.4191000 |
35.83 |
70.0 |
78 |
1000.00 |
15.82 |
52.56 |
0 |
52.56 |
0/1 |
| chr1 |
11579470 |
rs2072994 |
G |
A |
. |
PASS |
0.0545000 |
0.6556000 |
0.2698000 |
0.6471000 |
0.3599000 |
0.3598000 |
36.14 |
70.0 |
111 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11579608 |
rs34563951 |
G |
A |
. |
PASS |
0.0008000 |
0.0115000 |
0.0000000 |
0.0189000 |
0.0123000 |
0.0079872 |
35.96 |
70.0 |
41 |
780.82 |
1.91 |
56.10 |
0 |
56.10 |
0/1 |
| chr1 |
11708736 |
rs1055547 |
T |
C |
. |
PASS |
0.3480000 |
0.6196000 |
0.4077000 |
0.7783000 |
0.4550000 |
0.5050000 |
36.25 |
70.0 |
62 |
1000.00 |
17.54 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
11709052 |
rs4397658 |
C |
G |
. |
PASS |
0.6278000 |
0.6052000 |
0.4345000 |
0.4960000 |
0.6053000 |
0.5549000 |
35.96 |
69.13 |
23 |
897.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11714368 |
rs2272983 |
T |
G |
. |
PASS |
0.8207000 |
0.8732000 |
0.7659000 |
0.7972000 |
0.7536000 |
0.7991000 |
36.25 |
70.0 |
79 |
1000.00 |
8.70 |
40.51 |
0 |
40.51 |
0/1 |
| chr1 |
11718743 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.0 |
70.0 |
33 |
78.65 |
133.33 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
11728894 |
rs3125818 |
G |
A |
. |
PASS |
0.0726000 |
0.1758000 |
0.1498000 |
0.1173000 |
0.2004000 |
0.1364000 |
36.51 |
70.0 |
157 |
1000.00 |
2.97 |
46.50 |
0 |
46.50 |
0/1 |
| chr1 |
11731927 |
rs3215521 |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
24 |
428.74 |
5.13 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
11735262 |
rs2233027 |
C |
T |
. |
PASS |
0.0537000 |
0.1960000 |
0.1488000 |
0.1899000 |
0.2178000 |
0.1520000 |
37.0 |
70.0 |
16 |
170.00 |
25.00 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
11735652 |
rs2233025 |
G |
A |
. |
PASS |
0.0250000 |
0.2795000 |
0.1964000 |
0.1789000 |
0.1708000 |
0.1542000 |
37.0 |
70.0 |
34 |
449.98 |
18.49 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
11735841 |
rs2233024 |
C |
A |
. |
PASS |
0.0537000 |
0.1960000 |
0.1488000 |
0.1899000 |
0.2178000 |
0.1520000 |
36.2 |
70.0 |
41 |
1000.00 |
9.59 |
73.17 |
0 |
73.17 |
0/1 |
| chr1 |
11735877 |
rs2233022 |
A |
G |
. |
PASS |
0.0250000 |
0.2795000 |
0.1964000 |
0.1789000 |
0.1728000 |
0.1546000 |
37.0 |
70.0 |
19 |
328.04 |
26.32 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
11737051 |
rs2294638 |
G |
C |
. |
PASS |
0.9259000 |
0.6369000 |
0.4246000 |
0.4771000 |
0.5787000 |
0.6270000 |
37.0 |
70.0 |
23 |
921.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11740358 |
rs7417320 |
A |
G |
. |
PASS |
0.4039000 |
0.5130000 |
0.4256000 |
0.4026000 |
0.4724000 |
0.4365000 |
35.5 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11771988 |
rs17037327 |
A |
G |
. |
PASS |
0.0938000 |
0.0821000 |
0.0655000 |
0.1262000 |
0.1125000 |
0.0966000 |
36.74 |
69.57 |
81 |
1000.00 |
11.22 |
56.79 |
0 |
56.79 |
0/1 |
| chr1 |
11772303 |
rs1883574 |
A |
G |
. |
PASS |
0.9841000 |
0.8631000 |
0.8641000 |
0.7366000 |
0.7577000 |
0.8492000 |
37.0 |
70.0 |
11 |
268.58 |
13.64 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
11772340 |
rs2336034 |
G |
A |
. |
PASS |
0.0930000 |
0.0821000 |
0.0655000 |
0.1262000 |
0.1125000 |
0.0964000 |
35.29 |
68.57 |
23 |
459.07 |
3.73 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
11779762 |
rs12117076 |
C |
T |
. |
PASS |
0.0696000 |
0.2248000 |
0.0268000 |
0.3449000 |
0.2219000 |
0.1675000 |
35.59 |
70.0 |
79 |
1000.00 |
2.90 |
43.04 |
0 |
43.04 |
0/1 |
| chr1 |
11796168 |
rs17875908,rs146190997,rs149788052,rs140821677 |
CGGGCG |
C |
. |
PASS |
0.9584000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9884000 |
36.33 |
70.0 |
18 |
694.82 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11824556 |
rs4845879 |
A |
G |
. |
PASS |
0.4554000 |
0.7882000 |
0.7381000 |
0.6600000 |
0.4397000 |
0.5964000 |
35.08 |
70.0 |
49 |
816.26 |
2.12 |
51.02 |
0 |
51.02 |
0/1 |
| chr1 |
11824575 |
rs10864536 |
T |
C |
. |
PASS |
0.6846000 |
0.8775000 |
0.8968000 |
0.7207000 |
0.6656000 |
0.7576000 |
35.67 |
70.0 |
37 |
584.01 |
2.70 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
11824578 |
rs11121825 |
C |
T |
. |
PASS |
0.4539000 |
0.7867000 |
0.7381000 |
0.6600000 |
0.4397000 |
0.5958000 |
36.2 |
70.0 |
34 |
479.74 |
0.78 |
44.12 |
0 |
44.12 |
0/1 |
| chr1 |
11824621 |
rs11121826 |
T |
C |
. |
PASS |
0.5923000 |
0.7925000 |
0.7421000 |
0.6590000 |
0.4335000 |
0.6326000 |
37.0 |
70.0 |
13 |
137.25 |
3.08 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
11825851 |
rs10218813 |
G |
C |
. |
PASS |
0.6067000 |
0.7781000 |
0.7421000 |
0.6988000 |
0.4796000 |
0.6514000 |
36.37 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11826630 |
rs6668699 |
C |
T |
. |
PASS |
0.5431000 |
0.7752000 |
0.7302000 |
0.6958000 |
0.4714000 |
0.6296000 |
36.56 |
70.0 |
110 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11827180 |
rs6540995 |
A |
G |
. |
PASS |
0.8858000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9681000 |
36.11 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11827304 |
rs6540996 |
A |
G |
. |
PASS |
0.8858000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9681000 |
36.65 |
69.41 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11827355 |
rs6540997 |
A |
G |
. |
PASS |
0.5537000 |
0.7767000 |
0.7302000 |
0.6988000 |
0.4703000 |
0.6330000 |
36.76 |
69.61 |
51 |
1000.00 |
1.36 |
96.08 |
0 |
100.00 |
1/1 |
| chr1 |
11828238 |
rs4845880 |
G |
A |
. |
PASS |
0.4735000 |
0.7738000 |
0.7292000 |
0.6948000 |
0.4714000 |
0.6106000 |
36.49 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11828319 |
rs4845881 |
G |
A |
. |
PASS |
0.4796000 |
0.7709000 |
0.7292000 |
0.6948000 |
0.4714000 |
0.6118000 |
36.43 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11831543 |
rs72638684 |
C |
T |
. |
PASS |
0.0862000 |
0.0533000 |
0.1161000 |
0.1004000 |
0.2147000 |
0.1156000 |
35.91 |
70.0 |
88 |
1000.00 |
0.00 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
11831615 |
rs6667720 |
C |
T |
. |
PASS |
0.5159000 |
0.8141000 |
0.8800000 |
0.7237000 |
0.6391000 |
0.6963000 |
36.31 |
69.86 |
140 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11831756 |
rs6680385 |
A |
G |
. |
PASS |
0.5159000 |
0.8170000 |
0.8800000 |
0.7286000 |
0.6411000 |
0.6981000 |
36.11 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11832100 |
rs11121827 |
T |
A |
. |
PASS |
0.3797000 |
0.7594000 |
0.7649000 |
0.6272000 |
0.4264000 |
0.5687000 |
36.54 |
70.0 |
41 |
914.00 |
5.82 |
63.41 |
0 |
63.41 |
0/1 |
| chr1 |
11832311 |
rs10779764 |
G |
C |
. |
PASS |
0.3790000 |
0.7594000 |
0.7649000 |
0.6272000 |
0.4264000 |
0.5685000 |
37.0 |
69.58 |
116 |
1000.00 |
2.73 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
11835455 |
rs72638698 |
T |
G |
. |
PASS |
0.1362000 |
0.0576000 |
0.1141000 |
0.1034000 |
0.2147000 |
0.1296000 |
36.61 |
70.0 |
59 |
1000.00 |
7.65 |
52.54 |
0 |
52.54 |
0/1 |
| chr1 |
11835556 |
rs41275456 |
C |
T |
. |
PASS |
0.1362000 |
0.0576000 |
0.1141000 |
0.1034000 |
0.2147000 |
0.1296000 |
36.73 |
70.0 |
95 |
1000.00 |
1.39 |
46.32 |
0 |
46.32 |
0/1 |
| chr1 |
11836440 |
rs71492357 |
CTG |
CCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
70.0 |
16 |
131.23 |
35.00 |
31.25 |
0 |
100.00 |
0/1 |
| chr1 |
11836440 |
. |
CTG |
CCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
70.0 |
16 |
131.23 |
15.91 |
68.75 |
0 |
100.00 |
0/1 |
| chr1 |
11836628 |
rs6699881 |
T |
C |
. |
PASS |
0.5174000 |
0.8170000 |
0.8839000 |
0.7286000 |
0.6452000 |
0.7001000 |
36.54 |
69.81 |
104 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11836670 |
rs41275458 |
C |
A |
. |
PASS |
0.1369000 |
0.0576000 |
0.1141000 |
0.1034000 |
0.2147000 |
0.1298000 |
36.55 |
70.0 |
105 |
1000.00 |
2.86 |
49.52 |
0 |
50.48 |
0/1 |
| chr1 |
11836682 |
rs7538516 |
C |
T |
. |
PASS |
0.3812000 |
0.7594000 |
0.7698000 |
0.6252000 |
0.4305000 |
0.5705000 |
35.98 |
69.57 |
100 |
1000.00 |
8.13 |
47.00 |
0 |
47.00 |
0/1 |
| chr1 |
11838696 |
rs72640210 |
A |
G |
. |
PASS |
0.1369000 |
0.0576000 |
0.1141000 |
0.1034000 |
0.2147000 |
0.1298000 |
37.0 |
70.0 |
38 |
396.16 |
2.43 |
34.21 |
0 |
34.21 |
0/1 |
| chr1 |
11838762 |
rs72640211 |
G |
A |
. |
PASS |
0.0303000 |
0.0101000 |
0.0020000 |
0.0686000 |
0.0491000 |
0.0331000 |
37.0 |
70.0 |
57 |
965.54 |
8.90 |
49.12 |
0 |
49.12 |
0/1 |
| chr1 |
11838841 |
rs56001051 |
A |
G |
. |
PASS |
0.1369000 |
0.0576000 |
0.1141000 |
0.1034000 |
0.2147000 |
0.1298000 |
35.67 |
70.0 |
44 |
562.94 |
7.58 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
11838848 |
rs6697244 |
G |
T |
. |
PASS |
0.3828000 |
0.7594000 |
0.7698000 |
0.6252000 |
0.4294000 |
0.5707000 |
36.54 |
70.0 |
42 |
910.98 |
4.40 |
61.90 |
0 |
61.90 |
0/1 |
| chr1 |
11839009 |
rs55685198 |
C |
T |
. |
PASS |
0.1369000 |
0.0576000 |
0.1141000 |
0.1034000 |
0.2147000 |
0.1298000 |
36.21 |
69.34 |
141 |
1000.00 |
2.35 |
43.26 |
0 |
43.26 |
0/1 |
| chr1 |
11839034 |
rs55967531 |
G |
A |
. |
PASS |
0.0877000 |
0.0548000 |
0.1141000 |
0.1034000 |
0.2147000 |
0.1164000 |
36.56 |
69.27 |
135 |
1000.00 |
5.52 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
11839201 |
rs41307759 |
T |
A |
. |
PASS |
0.1490000 |
0.0591000 |
0.1141000 |
0.1034000 |
0.2147000 |
0.1332000 |
34.71 |
70.0 |
94 |
1000.00 |
12.77 |
44.68 |
0 |
44.68 |
0/1 |
| chr1 |
11839226 |
rs41307757 |
A |
G |
. |
PASS |
0.0303000 |
0.0101000 |
0.0020000 |
0.0686000 |
0.0491000 |
0.0331000 |
37.0 |
70.0 |
73 |
1000.00 |
5.64 |
46.58 |
0 |
46.58 |
0/1 |
| chr1 |
11839792 |
rs12566905 |
T |
C |
. |
PASS |
0.1369000 |
0.0576000 |
0.1190000 |
0.1034000 |
0.2147000 |
0.1308000 |
37.0 |
70.0 |
28 |
676.89 |
2.26 |
67.86 |
0 |
67.86 |
0/1 |
| chr1 |
11839923 |
rs12561919 |
C |
T |
. |
PASS |
0.1150000 |
0.0692000 |
0.1210000 |
0.1223000 |
0.2311000 |
0.1340000 |
35.31 |
70.0 |
116 |
1000.00 |
1.59 |
54.31 |
0 |
55.17 |
0/1 |
| chr1 |
11839966 |
rs4846043 |
G |
A |
. |
PASS |
0.3828000 |
0.7594000 |
0.7649000 |
0.6243000 |
0.4315000 |
0.5699000 |
37.0 |
69.7 |
135 |
1000.00 |
8.16 |
49.63 |
0 |
49.63 |
0/1 |
| chr1 |
11839998 |
rs4846044 |
T |
C |
. |
PASS |
0.6029000 |
0.9539000 |
0.9940000 |
0.9791000 |
0.9816000 |
0.8798000 |
36.61 |
69.74 |
152 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11842144 |
rs10864542 |
C |
G |
. |
PASS |
0.3820000 |
0.7594000 |
0.7659000 |
0.6252000 |
0.4294000 |
0.5697000 |
35.91 |
70.0 |
22 |
344.63 |
18.18 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
11844330 |
rs10864543 |
C |
T |
. |
PASS |
0.1415000 |
0.7334000 |
0.7649000 |
0.6173000 |
0.4151000 |
0.4980000 |
36.49 |
70.0 |
83 |
1000.00 |
0.36 |
56.63 |
0 |
56.63 |
0/1 |
| chr1 |
11844737 |
rs55890341 |
A |
G |
. |
PASS |
0.0893000 |
0.0562000 |
0.1190000 |
0.1024000 |
0.2157000 |
0.1180000 |
37.0 |
70.0 |
29 |
590.34 |
17.85 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
11845113 |
rs11587953 |
G |
A |
. |
PASS |
0.7617000 |
0.9741000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9335000 |
35.0 |
68.33 |
12 |
441.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11845167 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.15 |
70.0 |
47 |
614.90 |
4.68 |
42.55 |
1 |
42.55 |
0/1 |
| chr1 |
11845167 |
rs55820567,rs199890035 |
TTTA |
T |
. |
PASS |
0.0893000 |
0.0562000 |
0.1190000 |
0.1024000 |
0.2157000 |
0.1180000 |
35.24 |
69.05 |
49 |
611.89 |
4.08 |
42.86 |
1 |
100.00 |
0/1 |
| chr1 |
11845168 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.73 |
69.58 |
48 |
1000.00 |
10.00 |
41.67 |
1 |
100.00 |
0/1 |
| chr1 |
11845169 |
rs11586659 |
T |
G |
. |
PASS |
0.4206000 |
0.8055000 |
0.8810000 |
0.7117000 |
0.5726000 |
0.6548000 |
35.73 |
69.58 |
48 |
1000.00 |
7.14 |
58.33 |
1 |
100.00 |
0/1 |
| chr1 |
11845169 |
. |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.15 |
70.0 |
48 |
611.89 |
5.83 |
41.67 |
1 |
41.67 |
0/1 |
| chr1 |
11845222 |
rs55867221 |
T |
C |
. |
PASS |
0.1006000 |
0.0548000 |
0.1190000 |
0.1024000 |
0.2157000 |
0.1208000 |
36.73 |
69.56 |
110 |
1000.00 |
1.82 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
11847861 |
rs1537516 |
G |
A |
. |
PASS |
0.0666000 |
0.0519000 |
0.1190000 |
0.1024000 |
0.2157000 |
0.1114000 |
36.08 |
70.0 |
17 |
447.36 |
7.24 |
76.47 |
0 |
76.47 |
0/1 |
| chr1 |
11847902 |
rs1537515 |
C |
A |
. |
PASS |
0.0643000 |
0.0519000 |
0.1190000 |
0.1024000 |
0.2168000 |
0.1110000 |
35.43 |
70.0 |
39 |
770.68 |
7.36 |
58.97 |
0 |
58.97 |
0/1 |
| chr1 |
11848068 |
rs1537514 |
G |
C |
. |
PASS |
0.0885000 |
0.0548000 |
0.1190000 |
0.1024000 |
0.2157000 |
0.1176000 |
36.4 |
70.0 |
126 |
1000.00 |
4.76 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
11848879 |
rs2077360 |
A |
G |
. |
PASS |
0.7504000 |
0.9741000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9305000 |
36.5 |
70.0 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11849447 |
rs868014 |
A |
G |
. |
PASS |
0.7595000 |
0.9741000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9329000 |
36.73 |
70.0 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11851003 |
rs3818762 |
G |
C |
. |
PASS |
0.1278000 |
0.1383000 |
0.2232000 |
0.2883000 |
0.4622000 |
0.2460000 |
37.0 |
70.0 |
44 |
916.97 |
8.04 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
11851118 |
rs7518348 |
A |
G |
. |
PASS |
0.6528000 |
0.9683000 |
0.9960000 |
0.9970000 |
0.9980000 |
0.9022000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11852300 |
rs1476413 |
C |
T |
. |
PASS |
0.1452000 |
0.1398000 |
0.2351000 |
0.2803000 |
0.4601000 |
0.2512000 |
37.0 |
70.0 |
49 |
697.22 |
10.88 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
11852516 |
rs17375901 |
C |
T |
. |
PASS |
0.0197000 |
0.0086000 |
0.0020000 |
0.0686000 |
0.0511000 |
0.0306000 |
37.0 |
70.0 |
27 |
387.50 |
1.85 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
11854457 |
rs4846051 |
G |
A |
. |
PASS |
0.6558000 |
0.9683000 |
0.9960000 |
0.9970000 |
0.9980000 |
0.9030000 |
36.0 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11854476 |
rs1801131 |
T |
G |
. |
PASS |
0.1513000 |
0.1513000 |
0.2192000 |
0.3131000 |
0.4172000 |
0.2494000 |
36.71 |
70.0 |
78 |
1000.00 |
0.38 |
52.56 |
0 |
52.56 |
0/1 |
| chr1 |
11854671 |
rs12121543 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
24 |
350.61 |
0.76 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
11854755 |
rs1994798 |
G |
A |
. |
PASS |
0.4228000 |
0.7507000 |
0.7540000 |
0.5964000 |
0.4714000 |
0.5793000 |
37.0 |
70.0 |
46 |
539.17 |
6.39 |
36.96 |
0 |
36.96 |
0/1 |
| chr1 |
11854896 |
rs2066462 |
G |
A |
. |
PASS |
0.0772000 |
0.0576000 |
0.1181000 |
0.1024000 |
0.1575000 |
0.1034000 |
36.12 |
70.0 |
128 |
1000.00 |
3.68 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
11856378 |
rs1801133 |
G |
A |
. |
PASS |
0.0900000 |
0.4741000 |
0.2956000 |
0.3648000 |
0.1186000 |
0.2454000 |
36.31 |
70.0 |
191 |
1000.00 |
7.28 |
54.97 |
0 |
54.97 |
0/1 |
| chr1 |
11863057 |
rs2066470 |
G |
A |
. |
PASS |
0.0719000 |
0.0548000 |
0.1230000 |
0.0984000 |
0.1564000 |
0.1016000 |
37.0 |
69.55 |
105 |
1000.00 |
4.76 |
41.90 |
0 |
41.90 |
0/1 |
| chr1 |
11876662 |
rs17376328 |
G |
A |
. |
PASS |
0.0189000 |
0.0072000 |
0.0020000 |
0.0656000 |
0.0511000 |
0.0296000 |
35.15 |
70.0 |
27 |
405.26 |
13.11 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
11879685 |
rs198393 |
C |
T |
. |
PASS |
0.6157000 |
0.2565000 |
0.2312000 |
0.3956000 |
0.5215000 |
0.4259000 |
35.8 |
70.0 |
12 |
337.10 |
6.67 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
11883629 |
rs198399 |
T |
A |
. |
PASS |
0.8691000 |
0.2695000 |
0.2312000 |
0.3986000 |
0.5215000 |
0.4952000 |
34.6 |
70.0 |
10 |
130.12 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
11883731 |
rs12567136 |
C |
T |
. |
PASS |
0.1082000 |
0.0778000 |
0.1250000 |
0.1402000 |
0.1881000 |
0.1294000 |
36.65 |
70.0 |
74 |
1000.00 |
1.43 |
45.95 |
0 |
45.95 |
0/1 |
| chr1 |
11884555 |
rs198400 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9998000 |
37.0 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
11887303 |
rs7537765 |
A |
G |
. |
PASS |
0.2194000 |
0.0865000 |
0.1280000 |
0.1421000 |
0.1902000 |
0.1613000 |
37.0 |
70.0 |
28 |
509.81 |
3.81 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
11887316 |
rs41275478 |
C |
A |
. |
PASS |
0.0915000 |
0.0576000 |
0.1230000 |
0.0994000 |
0.1564000 |
0.1074000 |
37.0 |
70.0 |
19 |
282.12 |
9.36 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
11888384 |
rs198401 |
A |
G |
. |
PASS |
0.8684000 |
0.2709000 |
0.2302000 |
0.4046000 |
0.5245000 |
0.4968000 |
37.0 |
70.0 |
17 |
250.52 |
7.35 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
11889468 |
rs535107 |
A |
G |
. |
PASS |
0.5333000 |
0.2478000 |
0.2312000 |
0.4036000 |
0.5123000 |
0.4028000 |
37.0 |
70.0 |
13 |
220.80 |
2.20 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
11894133 |
rs41275494 |
A |
G |
. |
PASS |
0.0061000 |
0.0072000 |
0.0020000 |
0.0656000 |
0.0511000 |
0.0262000 |
37.0 |
70.0 |
78 |
1000.00 |
17.52 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
11897286 |
rs72640267 |
G |
T |
. |
PASS |
0.0961000 |
0.0576000 |
0.1240000 |
0.1004000 |
0.1575000 |
0.1092000 |
37.0 |
70.0 |
51 |
728.82 |
20.32 |
43.14 |
0 |
43.14 |
0/1 |
| chr1 |
11897592 |
rs198406 |
A |
G |
. |
PASS |
0.5340000 |
0.2421000 |
0.2312000 |
0.3986000 |
0.5102000 |
0.4008000 |
37.0 |
70.0 |
78 |
1000.00 |
2.26 |
64.10 |
0 |
64.10 |
0/1 |
| chr1 |
11905974 |
rs5068 |
A |
G |
. |
PASS |
0.0242000 |
0.0072000 |
0.0020000 |
0.0656000 |
0.0511000 |
0.0310000 |
37.0 |
70.0 |
49 |
822.53 |
2.38 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
11917620 |
rs35207557 |
T |
TA |
. |
PASS |
0.3714000 |
0.2032000 |
0.0823000 |
0.3797000 |
0.3824000 |
0.2937000 |
36.2 |
70.0 |
33 |
437.40 |
3.03 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
11986553 |
rs79841670 |
A |
AG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.87 |
69.89 |
176 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12004479 |
. |
TAC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.25 |
70.0 |
14 |
60.89 |
35.71 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
12024380 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.67 |
70.0 |
38 |
176.90 |
152.63 |
23.68 |
0 |
23.68 |
0/1 |
| chr1 |
12024384 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.45 |
70.0 |
38 |
182.92 |
142.11 |
23.68 |
0 |
28.95 |
0/1 |
| chr1 |
12056440 |
rs2236056 |
C |
T |
. |
PASS |
0.6936000 |
0.5533000 |
0.6349000 |
0.6581000 |
0.6851000 |
0.6536000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12062205 |
rs2236057 |
A |
G |
. |
PASS |
0.6324000 |
0.5648000 |
0.6845000 |
0.6730000 |
0.7157000 |
0.6579000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12067044 |
rs7550536 |
T |
G |
. |
PASS |
0.4100000 |
0.4986000 |
0.5456000 |
0.6074000 |
0.6022000 |
0.5268000 |
35.5 |
68.75 |
16 |
604.67 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12071680 |
rs1042842 |
A |
G |
. |
PASS |
0.8903000 |
0.5879000 |
0.6994000 |
0.6769000 |
0.7127000 |
0.7324000 |
36.79 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12082926 |
rs2295283 |
A |
G |
. |
PASS |
0.7950000 |
0.5980000 |
0.5516000 |
0.7276000 |
0.6115000 |
0.6693000 |
36.72 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12091210 |
rs946461 |
T |
C |
. |
PASS |
0.9123000 |
0.6153000 |
0.5556000 |
0.7336000 |
0.6278000 |
0.7079000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12144434 |
rs1201113 |
G |
A |
. |
PASS |
0.2837000 |
0.1023000 |
0.0347000 |
0.1382000 |
0.0900000 |
0.1414000 |
35.67 |
70.0 |
11 |
298.34 |
4.04 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
12157288 |
rs11569835 |
T |
C |
. |
PASS |
0.0333000 |
0.0778000 |
0.0486000 |
0.1471000 |
0.0879000 |
0.0761000 |
37.0 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12164391 |
rs11569850 |
G |
C |
. |
PASS |
0.0053000 |
0.0879000 |
0.0665000 |
0.0666000 |
0.1012000 |
0.0601000 |
37.0 |
70.0 |
40 |
678.39 |
5.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
12164675 |
rs11569852 |
G |
A |
. |
PASS |
0.0053000 |
0.0865000 |
0.0665000 |
0.0656000 |
0.1002000 |
0.0595000 |
34.82 |
70.0 |
29 |
315.70 |
20.06 |
37.93 |
0 |
37.93 |
0/1 |
| chr1 |
12170288 |
rs2297729 |
G |
A |
. |
PASS |
0.0734000 |
0.0922000 |
0.0665000 |
0.0656000 |
0.0971000 |
0.0777000 |
36.48 |
69.13 |
82 |
1000.00 |
4.03 |
56.10 |
0 |
56.10 |
0/1 |
| chr1 |
12175729 |
rs1763642 |
C |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.34 |
70.0 |
127 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12175818 |
rs598661 |
A |
G |
. |
PASS |
0.5711000 |
0.4121000 |
0.3810000 |
0.2008000 |
0.3824000 |
0.3996000 |
36.35 |
70.0 |
123 |
1000.00 |
13.24 |
44.72 |
0 |
44.72 |
0/1 |
| chr1 |
12198297 |
rs476488 |
T |
C |
. |
PASS |
0.5053000 |
0.1801000 |
0.3988000 |
0.1292000 |
0.1380000 |
0.2915000 |
36.08 |
70.0 |
65 |
833.90 |
4.62 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
12198635 |
rs6419481 |
T |
C |
. |
PASS |
0.6755000 |
0.6844000 |
0.7173000 |
0.7376000 |
0.8047000 |
0.7228000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12248942 |
rs945439 |
A |
G |
. |
PASS |
0.2012000 |
0.1340000 |
0.1548000 |
0.2147000 |
0.2730000 |
0.1993000 |
37.0 |
70.0 |
83 |
1000.00 |
5.75 |
53.01 |
0 |
53.01 |
0/1 |
| chr1 |
12248965 |
rs945438 |
A |
G |
. |
PASS |
0.1982000 |
0.1340000 |
0.1548000 |
0.2157000 |
0.2730000 |
0.1987000 |
35.7 |
70.0 |
69 |
1000.00 |
0.86 |
53.62 |
0 |
53.62 |
0/1 |
| chr1 |
12249020 |
rs1815530 |
C |
T |
. |
PASS |
0.1634000 |
0.1326000 |
0.1548000 |
0.2167000 |
0.2730000 |
0.1895000 |
35.91 |
70.0 |
22 |
348.78 |
9.09 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
12249031 |
rs1201157 |
A |
G |
. |
PASS |
0.6520000 |
0.4380000 |
0.6954000 |
0.5835000 |
0.6217000 |
0.6114000 |
33.4 |
70.0 |
21 |
286.01 |
11.43 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
12251191 |
rs472093 |
T |
A |
. |
PASS |
0.0575000 |
0.0937000 |
0.1349000 |
0.1740000 |
0.2352000 |
0.1362000 |
33.8 |
70.0 |
27 |
460.64 |
2.96 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
12251765 |
rs498906 |
T |
G |
. |
PASS |
0.1762000 |
0.1268000 |
0.1528000 |
0.2147000 |
0.2863000 |
0.1939000 |
35.8 |
70.0 |
31 |
275.76 |
5.16 |
32.26 |
0 |
32.26 |
0/1 |
| chr1 |
12251808 |
rs653667 |
T |
G |
. |
PASS |
0.2247000 |
0.2089000 |
0.3581000 |
0.3499000 |
0.3742000 |
0.3037000 |
36.37 |
70.0 |
60 |
564.41 |
14.04 |
31.67 |
0 |
31.67 |
0/1 |
| chr1 |
12252892 |
rs1768642 |
C |
T |
. |
PASS |
0.1732000 |
0.1254000 |
0.1498000 |
0.2177000 |
0.2761000 |
0.1909000 |
36.02 |
70.0 |
99 |
1000.00 |
3.09 |
49.49 |
0 |
49.49 |
0/1 |
| chr1 |
12252955 |
rs1061622 |
T |
G |
. |
PASS |
0.1868000 |
0.1268000 |
0.1498000 |
0.2177000 |
0.2761000 |
0.1947000 |
36.31 |
70.0 |
98 |
1000.00 |
1.57 |
53.06 |
0 |
53.06 |
0/1 |
| chr1 |
12261972 |
rs5746051 |
A |
G |
. |
PASS |
0.0439000 |
0.0807000 |
0.1577000 |
0.1640000 |
0.2249000 |
0.1314000 |
37.0 |
70.0 |
23 |
190.70 |
12.42 |
30.43 |
0 |
30.43 |
0/1 |
| chr1 |
12262298 |
rs5746053 |
G |
A |
. |
PASS |
0.1543000 |
0.1081000 |
0.1567000 |
0.1720000 |
0.2301000 |
0.1667000 |
35.59 |
70.0 |
53 |
494.08 |
20.42 |
32.08 |
0 |
32.08 |
0/1 |
| chr1 |
12267265 |
rs1061624 |
A |
G |
. |
PASS |
0.3026000 |
0.5562000 |
0.5109000 |
0.5318000 |
0.4601000 |
0.4565000 |
36.19 |
69.78 |
172 |
1000.00 |
0.73 |
51.74 |
0 |
51.74 |
0/1 |
| chr1 |
12267270 |
rs5030792 |
T |
G |
. |
PASS |
0.0030000 |
0.0432000 |
0.0010000 |
0.0547000 |
0.0092000 |
0.0197680 |
36.58 |
70.0 |
179 |
1000.00 |
2.52 |
48.04 |
0 |
48.04 |
0/1 |
| chr1 |
12267292 |
rs3397 |
C |
T |
. |
PASS |
0.1649000 |
0.6916000 |
0.2887000 |
0.6213000 |
0.4448000 |
0.4091000 |
36.09 |
70.0 |
197 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12304694 |
rs79820334 |
A |
G |
. |
PASS |
0.0000000 |
0.0130000 |
0.0000000 |
0.0268000 |
0.0010000 |
0.0073882 |
37.0 |
70.0 |
40 |
640.77 |
1.32 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
12401868 |
rs28551666 |
A |
C |
. |
PASS |
0.7398000 |
0.7579000 |
0.8978000 |
0.7913000 |
0.8027000 |
0.7967000 |
36.57 |
70.0 |
141 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12418700 |
rs10864552 |
T |
C |
. |
PASS |
0.9962000 |
0.9625000 |
0.9990000 |
0.9165000 |
0.9346000 |
0.9641000 |
36.22 |
69.78 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12567232 |
rs7554257 |
A |
G |
. |
PASS |
0.9977000 |
0.9899000 |
0.9970000 |
0.9732000 |
0.9877000 |
0.9896000 |
36.43 |
70.0 |
21 |
829.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12638964 |
rs2275875 |
T |
C |
. |
PASS |
0.8011000 |
0.7291000 |
0.7282000 |
0.8469000 |
0.8988000 |
0.8047000 |
36.31 |
70.0 |
105 |
1000.00 |
4.62 |
49.52 |
0 |
49.52 |
0/1 |
| chr1 |
12639018 |
rs2275874 |
C |
T |
. |
PASS |
0.1036000 |
0.4856000 |
0.3591000 |
0.5239000 |
0.6104000 |
0.3914000 |
37.0 |
70.0 |
39 |
518.47 |
0.32 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
12658046 |
rs12407824 |
T |
C |
. |
PASS |
0.5113000 |
0.5605000 |
0.4702000 |
0.5129000 |
0.4131000 |
0.4910000 |
37.0 |
70.0 |
94 |
1000.00 |
3.42 |
54.26 |
0 |
54.26 |
0/1 |
| chr1 |
12658064 |
rs58584542 |
G |
A |
. |
PASS |
0.5091000 |
0.5620000 |
0.4683000 |
0.5089000 |
0.4018000 |
0.4872000 |
37.0 |
70.0 |
119 |
1000.00 |
5.68 |
51.26 |
0 |
51.26 |
0/1 |
| chr1 |
12658121 |
rs6690561 |
T |
C |
. |
PASS |
0.9887000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9968000 |
36.75 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12776134 |
rs3010874 |
C |
A |
. |
PASS |
0.5756000 |
0.8718000 |
0.6190000 |
0.8211000 |
0.7485000 |
0.7085000 |
36.76 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12776218 |
rs3000860 |
A |
C |
. |
PASS |
0.8812000 |
0.8948000 |
0.7321000 |
0.8638000 |
0.9162000 |
0.8564000 |
36.83 |
69.86 |
145 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12776344 |
rs3000859 |
A |
T |
. |
PASS |
0.4009000 |
0.8473000 |
0.6190000 |
0.8151000 |
0.7423000 |
0.6565000 |
36.17 |
69.85 |
130 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12779560 |
rs3010876 |
T |
C |
. |
PASS |
0.9228000 |
0.8818000 |
0.7817000 |
0.8300000 |
0.8170000 |
0.8494000 |
36.61 |
70.0 |
115 |
1000.00 |
7.73 |
53.04 |
0 |
53.04 |
0/1 |
| chr1 |
12779618 |
rs3010877 |
T |
C |
. |
PASS |
0.9228000 |
0.8790000 |
0.7817000 |
0.8260000 |
0.8160000 |
0.8480000 |
36.33 |
70.0 |
112 |
1000.00 |
7.01 |
48.21 |
0 |
48.21 |
0/1 |
| chr1 |
12853750 |
rs72472660 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.91 |
29 |
339.71 |
5.02 |
37.93 |
0 |
37.93 |
0/1 |
| chr1 |
12853805 |
rs79066220 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.82 |
19 |
365.67 |
23.92 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
12853872 |
rs4989048 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.75 |
11 |
97.35 |
36.36 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
12854020 |
. |
TGA |
TTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.74 |
44.43 |
74 |
692.36 |
15.39 |
31.08 |
0 |
31.08 |
0/1 |
| chr1 |
12854041 |
rs76280430 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
43.56 |
93 |
803.39 |
8.60 |
29.03 |
0 |
29.03 |
0/1 |
| chr1 |
12854052 |
rs78573959 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.35 |
111 |
719.46 |
6.44 |
23.42 |
0 |
23.42 |
0/1 |
| chr1 |
12854068 |
rs79492089 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.36 |
130 |
161.04 |
13.19 |
10.77 |
0 |
10.77 |
0/1 |
| chr1 |
12854090 |
rs79698223 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
43.23 |
189 |
999.52 |
2.77 |
20.63 |
0 |
20.63 |
0/1 |
| chr1 |
12854097 |
rs76193255 |
T |
C |
. |
PASS |
0.1619000 |
0.3790000 |
0.3631000 |
0.4205000 |
0.3824000 |
0.3275000 |
37.0 |
43.42 |
194 |
1000.00 |
1.34 |
20.62 |
0 |
20.62 |
0/1 |
| chr1 |
12854105 |
rs76648802 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
42.6 |
217 |
1000.00 |
2.76 |
19.35 |
0 |
19.35 |
0/1 |
| chr1 |
12854162 |
rs199893374 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
33.29 |
235 |
1000.00 |
9.46 |
19.15 |
0 |
19.15 |
0/1 |
| chr1 |
12854188 |
rs76030350 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
30.58 |
230 |
1000.00 |
1.74 |
20.87 |
0 |
20.87 |
0/1 |
| chr1 |
12854356 |
rs61775051 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.35 |
32.92 |
209 |
859.95 |
16.86 |
17.70 |
0 |
17.70 |
0/1 |
| chr1 |
12854414 |
rs1063769 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.03 |
38.41 |
200 |
875.03 |
35.14 |
18.50 |
0 |
18.50 |
0/1 |
| chr1 |
12854474 |
rs1063774 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
40.76 |
232 |
464.42 |
23.28 |
12.50 |
0 |
12.50 |
0/1 |
| chr1 |
12854479 |
rs1063775 |
C |
G |
. |
PASS |
0.1150000 |
0.0519000 |
0.0685000 |
0.0785000 |
0.1697000 |
0.1002000 |
36.56 |
41.85 |
224 |
404.97 |
27.98 |
12.05 |
0 |
12.05 |
0/1 |
| chr1 |
12855835 |
rs1063795 |
C |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.28 |
65.0 |
199 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12855845 |
rs1063797 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.94 |
65.21 |
207 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12855884 |
rs78124722 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
44.55 |
232 |
176.19 |
47.65 |
9.48 |
0 |
9.48 |
0/1 |
| chr1 |
12856010 |
rs61775053 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.89 |
58.58 |
543 |
1000.00 |
1.88 |
59.48 |
0 |
59.85 |
0/1 |
| chr1 |
12856079 |
rs142994008 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
55.64 |
727 |
1000.00 |
2.96 |
16.37 |
0 |
16.37 |
0/1 |
| chr1 |
12856111 |
rs61775054 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
58.87 |
572 |
1000.00 |
12.48 |
50.17 |
0 |
50.17 |
0/1 |
| chr1 |
12856153 |
rs61775055 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
57.96 |
339 |
1000.00 |
9.10 |
42.48 |
0 |
42.48 |
0/1 |
| chr1 |
12887549 |
rs2994114 |
T |
C |
. |
PASS |
0.5885000 |
0.7262000 |
0.9980000 |
0.7714000 |
0.8845000 |
0.7845000 |
36.18 |
62.85 |
146 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12888289 |
rs183802277 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.75 |
20 |
70.26 |
30.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
12888310 |
rs189212178 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.83 |
27 |
136.88 |
44.44 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
12888347 |
rs200693692 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.44 |
90 |
820.29 |
0.74 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
12888364 |
rs377612057 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
48.52 |
119 |
975.75 |
15.28 |
27.73 |
0 |
27.73 |
0/1 |
| chr1 |
12888371 |
rs200394590 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
40.97 |
133 |
762.45 |
3.94 |
21.80 |
0 |
21.80 |
0/1 |
| chr1 |
12888389 |
rs1830486 |
A |
C |
. |
PASS |
0.5144000 |
0.6138000 |
0.8254000 |
0.6431000 |
0.6984000 |
0.6526000 |
37.0 |
61.06 |
167 |
170.82 |
30.43 |
10.18 |
0 |
10.18 |
0/1 |
| chr1 |
12888397 |
rs202156326 |
C |
T |
. |
PASS |
0.0454000 |
0.0043000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0125800 |
35.84 |
40.06 |
166 |
726.74 |
14.42 |
18.67 |
0 |
18.67 |
0/1 |
| chr1 |
12888415 |
rs200349667 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
40.97 |
176 |
720.67 |
8.87 |
17.61 |
0 |
17.61 |
0/1 |
| chr1 |
12888601 |
rs113914674,rs5772510 |
G |
GC |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9996000 |
36.79 |
66.9 |
274 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12888629 |
rs76312011 |
A |
G |
. |
PASS |
0.0008000 |
0.0029000 |
0.0079000 |
0.0000000 |
0.0061000 |
0.0033946 |
36.51 |
56.55 |
223 |
1000.00 |
23.70 |
21.97 |
0 |
21.97 |
0/1 |
| chr1 |
12888706 |
rs61777005 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.16 |
57.82 |
108 |
1000.00 |
10.14 |
52.78 |
0 |
52.78 |
0/1 |
| chr1 |
12888752 |
rs61777006 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.48 |
50 |
944.84 |
4.59 |
54.00 |
0 |
54.00 |
0/1 |
| chr1 |
12888795 |
rs61777007 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.45 |
20 |
362.66 |
0.00 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
12898445 |
rs11121996 |
C |
A |
. |
PASS |
0.5318000 |
0.8660000 |
0.6984000 |
0.8330000 |
0.8507000 |
0.7344000 |
36.3 |
69.83 |
86 |
1000.00 |
0.85 |
98.84 |
0 |
100.00 |
1/1 |
| chr1 |
12898472 |
rs4301642 |
C |
T |
. |
PASS |
0.9803000 |
0.9452000 |
0.9821000 |
0.8847000 |
0.9335000 |
0.9475000 |
36.38 |
69.74 |
116 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
12898654 |
rs55954336 |
A |
G |
. |
PASS |
0.3699000 |
0.5836000 |
0.4891000 |
0.4543000 |
0.4356000 |
0.4533000 |
36.17 |
63.39 |
116 |
1000.00 |
0.84 |
99.14 |
0 |
99.14 |
1/1 |
| chr1 |
12898667 |
rs55971055 |
C |
G |
. |
PASS |
0.0257000 |
0.1427000 |
0.2361000 |
0.1809000 |
0.1616000 |
0.1420000 |
36.5 |
61.68 |
115 |
1000.00 |
1.21 |
62.61 |
0 |
62.61 |
0/1 |
| chr1 |
12898673 |
rs4453052 |
G |
T |
. |
PASS |
0.8434000 |
0.8458000 |
0.8036000 |
0.7833000 |
0.8323000 |
0.8215000 |
35.8 |
64.12 |
114 |
1000.00 |
0.26 |
35.09 |
0 |
35.09 |
0/1 |
| chr1 |
12898775 |
rs61775386 |
C |
G |
. |
PASS |
0.8631000 |
0.5403000 |
0.6369000 |
0.6282000 |
0.6462000 |
0.6833000 |
36.71 |
64.34 |
128 |
1000.00 |
4.19 |
32.03 |
0 |
32.03 |
0/1 |
| chr1 |
12898778 |
rs61775387 |
T |
A |
. |
PASS |
0.8631000 |
0.5303000 |
0.6250000 |
0.6213000 |
0.6472000 |
0.6783000 |
36.71 |
64.4 |
123 |
1000.00 |
0.70 |
34.15 |
0 |
34.15 |
0/1 |
| chr1 |
12898833 |
rs147676792 |
G |
C |
. |
PASS |
0.0772000 |
0.0692000 |
0.0367000 |
0.1163000 |
0.1564000 |
0.0793000 |
36.48 |
64.61 |
69 |
704.40 |
8.70 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
12898953 |
rs11121997 |
G |
A |
. |
PASS |
0.4221000 |
0.4078000 |
0.3690000 |
0.3579000 |
0.2730000 |
0.3674000 |
37.0 |
51.56 |
11 |
310.35 |
0.00 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
12900997 |
rs5007448 |
G |
T |
. |
PASS |
0.5545000 |
0.5418000 |
0.3938000 |
0.5268000 |
0.4867000 |
0.5016000 |
37.0 |
63.17 |
65 |
268.98 |
25.64 |
18.46 |
0 |
18.46 |
0/1 |
| chr1 |
12907121 |
. |
ACA |
ATG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.0 |
11 |
101.50 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
12907136 |
rs5027835 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.86 |
14 |
217.78 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
12907169 |
rs5027836 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.94 |
34 |
617.05 |
0.00 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
12907199 |
rs5027837 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.8 |
64.95 |
86 |
1000.00 |
3.47 |
68.60 |
0 |
68.60 |
0/1 |
| chr1 |
12907212 |
rs5027838 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
65.77 |
121 |
1000.00 |
1.18 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
12907277 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
67.32 |
227 |
179.23 |
6.01 |
9.69 |
0 |
9.69 |
0/1 |
| chr1 |
12907282 |
rs139731855 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
67.42 |
235 |
1000.00 |
3.00 |
49.36 |
0 |
49.36 |
0/1 |
| chr1 |
12907283 |
. |
GTG |
GCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.41 |
67.37 |
237 |
1000.00 |
3.99 |
47.26 |
0 |
47.26 |
0/1 |
| chr1 |
12907316 |
rs112607517 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.39 |
67.27 |
216 |
1000.00 |
7.07 |
45.37 |
0 |
45.37 |
0/1 |
| chr1 |
12907349 |
. |
TCA |
TTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
67.95 |
154 |
995.51 |
30.60 |
25.32 |
0 |
25.97 |
0/1 |
| chr1 |
12907777 |
rs28391533 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
67.12 |
267 |
1000.00 |
46.58 |
31.09 |
0 |
31.09 |
0/1 |
| chr1 |
12907781 |
rs28441396 |
T |
C |
. |
PASS |
0.0000000 |
0.0014000 |
0.0020000 |
0.0000000 |
0.0000000 |
0.0005990 |
36.43 |
67.21 |
269 |
1000.00 |
46.52 |
31.23 |
0 |
31.23 |
0/1 |
| chr1 |
12907798 |
rs150096254 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
67.45 |
326 |
1000.00 |
33.90 |
37.12 |
0 |
37.12 |
0/1 |
| chr1 |
12907800 |
rs201112865 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
67.31 |
326 |
310.97 |
34.16 |
9.82 |
0 |
9.82 |
0/1 |
| chr1 |
12907801 |
. |
GCC |
GTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.23 |
67.31 |
330 |
1000.00 |
30.32 |
35.45 |
0 |
35.45 |
0/1 |
| chr1 |
12907837 |
rs1736811 |
C |
T |
. |
PASS |
0.0182000 |
0.0072000 |
0.0000000 |
0.0050000 |
0.0031000 |
0.0073882 |
36.27 |
68.22 |
453 |
1000.00 |
9.80 |
54.08 |
0 |
54.08 |
0/1 |
| chr1 |
12907885 |
rs848418 |
T |
C |
. |
PASS |
0.9614000 |
0.9121000 |
0.8125000 |
0.9433000 |
0.9254000 |
0.9139000 |
36.51 |
69.77 |
599 |
1000.00 |
3.43 |
36.89 |
0 |
36.89 |
0/1 |
| chr1 |
12908236 |
rs1736809 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.47 |
69.79 |
26 |
630.72 |
0.00 |
73.08 |
0 |
73.08 |
0/1 |
| chr1 |
12908243 |
rs1736808 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.76 |
24 |
605.39 |
0.00 |
70.83 |
0 |
70.83 |
0/1 |
| chr1 |
12908278 |
rs3860363 |
C |
A |
. |
PASS |
0.5393000 |
0.5360000 |
0.4077000 |
0.5268000 |
0.4898000 |
0.5002000 |
34.0 |
59.75 |
14 |
76.32 |
0.00 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
12921600 |
rs199504163 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
53.56 |
259 |
1000.00 |
41.30 |
19.31 |
0 |
19.31 |
0/1 |
| chr1 |
12921642 |
rs2994093 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
53.02 |
204 |
1000.00 |
20.89 |
31.37 |
0 |
31.37 |
0/1 |
| chr1 |
12921716 |
rs2994094 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.36 |
76 |
1000.00 |
0.56 |
43.42 |
0 |
43.42 |
0/1 |
| chr1 |
12940068 |
rs2994082 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.0 |
12 |
56.72 |
50.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
12942119 |
rs75355616 |
C |
T |
. |
PASS |
0.0303000 |
0.3285000 |
0.2183000 |
0.3201000 |
0.3027000 |
0.2208000 |
36.41 |
61.57 |
157 |
1000.00 |
6.10 |
38.85 |
0 |
38.85 |
0/1 |
| chr1 |
12942862 |
rs61778465 |
G |
C |
. |
PASS |
0.5113000 |
0.5231000 |
0.3661000 |
0.5209000 |
0.4765000 |
0.4788000 |
35.43 |
68.48 |
52 |
731.55 |
2.68 |
44.23 |
0 |
44.23 |
0/1 |
| chr1 |
12953256 |
rs199702833 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
52.5 |
16 |
74.45 |
50.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
12953268 |
rs200660038 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
53.77 |
17 |
443.22 |
13.57 |
76.47 |
0 |
76.47 |
0/1 |
| chr1 |
12953303 |
rs201840380 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
54.25 |
12 |
253.56 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
12979729 |
rs146836223 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
55.37 |
569 |
1000.00 |
1.47 |
28.65 |
0 |
28.65 |
0/1 |
| chr1 |
12979845 |
rs142026718 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.53 |
51.65 |
483 |
1000.00 |
2.22 |
26.29 |
0 |
26.29 |
0/1 |
| chr1 |
12986613 |
rs370210572 |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
44.0 |
19 |
103.64 |
12.63 |
26.32 |
0 |
26.32 |
0/1 |
| chr1 |
12987602 |
rs76625528 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
56.0 |
199 |
1000.00 |
0.33 |
44.72 |
0 |
44.72 |
0/1 |
| chr1 |
12987614 |
rs147031341 |
A |
G |
. |
PASS |
0.4508000 |
0.4553000 |
0.3700000 |
0.4950000 |
0.5031000 |
0.4543000 |
36.44 |
56.18 |
201 |
1000.00 |
1.94 |
42.29 |
0 |
42.29 |
0/1 |
| chr1 |
12987679 |
rs199598351 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.39 |
52.03 |
137 |
1000.00 |
0.92 |
43.07 |
0 |
43.07 |
0/1 |
| chr1 |
12987833 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.82 |
53.05 |
117 |
1000.00 |
3.76 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
12987951 |
rs148022983 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
50.57 |
467 |
1000.00 |
1.20 |
41.33 |
0 |
41.33 |
0/1 |
| chr1 |
13001186 |
rs200795385 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.51 |
55.71 |
106 |
1000.00 |
20.18 |
46.23 |
0 |
46.23 |
0/1 |
| chr1 |
13001312 |
rs76131424 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.42 |
62.68 |
381 |
1000.00 |
0.48 |
53.54 |
0 |
54.07 |
0/1 |
| chr1 |
13001418 |
rs150206676 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
54.8 |
48 |
224.60 |
5.00 |
20.83 |
0 |
20.83 |
0/1 |
| chr1 |
13001428 |
rs61779368 |
C |
A |
. |
PASS |
0.0628000 |
0.0014000 |
0.0050000 |
0.0000000 |
0.0092000 |
0.0195690 |
37.0 |
56.37 |
27 |
675.75 |
7.41 |
70.37 |
0 |
70.37 |
0/1 |
| chr1 |
13001445 |
rs61779369 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.88 |
23 |
566.62 |
8.70 |
69.57 |
0 |
69.57 |
0/1 |
| chr1 |
13001465 |
rs201785437 |
G |
T |
. |
PASS |
0.0212000 |
0.1037000 |
0.0913000 |
0.0646000 |
0.0624000 |
0.0635000 |
37.0 |
50.91 |
12 |
387.29 |
0.00 |
91.67 |
0 |
91.67 |
0/1 |
| chr1 |
13012827 |
. |
C |
T |
. |
PASS |
0.0000000 |
0.0043000 |
0.0010000 |
0.0060000 |
0.0348000 |
0.0087859 |
37.0 |
52.57 |
22 |
193.70 |
0.00 |
31.82 |
0 |
31.82 |
0/1 |
| chr1 |
13036330 |
rs200053605 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
32.0 |
24 |
104.14 |
91.67 |
20.83 |
0 |
20.83 |
0/1 |
| chr1 |
13036447 |
rs199683676 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
29.78 |
33 |
979.84 |
0.67 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
13036587 |
rs77788641 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
47.09 |
161 |
1000.00 |
7.53 |
68.32 |
0 |
68.32 |
0/1 |
| chr1 |
13036654 |
rs201636235 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
45.84 |
96 |
460.23 |
9.87 |
19.79 |
0 |
19.79 |
0/1 |
| chr1 |
13037823 |
rs202065754 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.46 |
15 |
465.39 |
3.08 |
86.67 |
0 |
86.67 |
0/1 |
| chr1 |
13037860 |
rs201365789 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
55.36 |
16 |
480.14 |
0.00 |
87.50 |
0 |
87.50 |
0/1 |
| chr1 |
13037864 |
rs200307391 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.23 |
55.54 |
15 |
425.22 |
1.03 |
86.67 |
0 |
86.67 |
0/1 |
| chr1 |
13037877 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.43 |
58.71 |
16 |
468.13 |
1.79 |
87.50 |
0 |
87.50 |
0/1 |
| chr1 |
13038064 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.57 |
11 |
226.81 |
25.97 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
13038327 |
rs199598633 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
53.12 |
31 |
514.38 |
3.63 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
13038350 |
rs200724140 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
52.22 |
30 |
241.17 |
2.22 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
13052789 |
rs61780142 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
68.45 |
426 |
1000.00 |
2.75 |
51.41 |
0 |
51.41 |
0/1 |
| chr1 |
13052871 |
rs79792138 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.55 |
67.69 |
246 |
1000.00 |
0.35 |
43.09 |
0 |
43.09 |
0/1 |
| chr1 |
13052907 |
rs72474524 |
T |
C |
. |
PASS |
0.4909000 |
0.4899000 |
0.6746000 |
0.5179000 |
0.4867000 |
0.5323000 |
36.54 |
66.57 |
179 |
1000.00 |
1.29 |
72.63 |
0 |
72.63 |
0/1 |
| chr1 |
13111584 |
rs200257916 |
T |
C |
. |
PASS |
0.4206000 |
0.1455000 |
0.1042000 |
0.1133000 |
0.1984000 |
0.2137000 |
37.0 |
70.0 |
11 |
268.59 |
18.18 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
13123728 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.72 |
33 |
1000.00 |
3.76 |
87.88 |
0 |
87.88 |
0/1 |
| chr1 |
13123748 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.5 |
23 |
65.39 |
47.83 |
17.39 |
0 |
17.39 |
0/1 |
| chr1 |
13123781 |
. |
GCC |
GTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
50.5 |
16 |
83.47 |
25.00 |
25.00 |
1 |
25.00 |
0/1 |
| chr1 |
13123782 |
. |
C |
T |
. |
PASS |
0.0280000 |
0.3732000 |
0.2589000 |
0.3638000 |
0.2546000 |
0.2340000 |
37.0 |
50.5 |
13 |
95.48 |
19.23 |
30.77 |
1 |
30.77 |
0/1 |
| chr1 |
13123783 |
. |
C |
T |
. |
PASS |
0.0280000 |
0.3732000 |
0.2589000 |
0.3638000 |
0.2546000 |
0.2340000 |
34.0 |
50.5 |
13 |
83.47 |
19.23 |
30.77 |
1 |
30.77 |
0/1 |
| chr1 |
13123790 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.0 |
13 |
95.48 |
19.23 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
13141561 |
rs200582121 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.38 |
25 |
226.46 |
23.00 |
32.00 |
0 |
32.00 |
0/1 |
| chr1 |
13141835 |
rs79437155 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.82 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13142623 |
rs28564800 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.75 |
20 |
74.41 |
80.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
13173016 |
rs1852947 |
A |
G |
. |
PASS |
0.3177000 |
0.5317000 |
0.4246000 |
0.5577000 |
0.4560000 |
0.4441000 |
37.0 |
70.0 |
24 |
967.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13183236 |
. |
CCT |
CTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.57 |
69 |
55.26 |
26.92 |
10.14 |
0 |
10.14 |
0/1 |
| chr1 |
13183243 |
rs138897759 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.57 |
69 |
52.25 |
24.02 |
10.14 |
0 |
10.14 |
0/1 |
| chr1 |
13183247 |
. |
CTC |
CAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
68.92 |
83 |
164.37 |
46.18 |
14.46 |
0 |
14.46 |
0/1 |
| chr1 |
13183439 |
rs28713604 |
T |
C |
. |
PASS |
0.5764000 |
0.6556000 |
0.7163000 |
0.6640000 |
0.8149000 |
0.6797000 |
36.53 |
68.89 |
459 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13183511 |
rs72864546 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.74 |
66.46 |
375 |
1000.00 |
21.31 |
49.60 |
0 |
49.60 |
0/1 |
| chr1 |
13183528 |
rs76937665 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
65.9 |
327 |
1000.00 |
31.21 |
44.34 |
0 |
44.34 |
0/1 |
| chr1 |
13183530 |
rs200046163 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
68.26 |
332 |
84.05 |
31.70 |
8.13 |
0 |
8.13 |
0/1 |
| chr1 |
13183531 |
. |
GCC |
GTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
65.81 |
331 |
1000.00 |
31.48 |
43.20 |
0 |
43.20 |
0/1 |
| chr1 |
13219149 |
rs61780824 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.26 |
39.94 |
203 |
1000.00 |
1.77 |
32.02 |
0 |
32.02 |
0/1 |
| chr1 |
13328864 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
51.0 |
23 |
429.31 |
3.34 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
13328887 |
rs200631669 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.25 |
24 |
225.31 |
8.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
13329337 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.91 |
21 |
363.79 |
4.33 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
13329350 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.91 |
19 |
365.66 |
3.83 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
13329354 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.91 |
19 |
369.81 |
3.83 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
13329391 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
43.78 |
15 |
298.32 |
4.44 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
13353767 |
rs202084856 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
47.42 |
22 |
682.94 |
7.18 |
86.36 |
0 |
86.36 |
0/1 |
| chr1 |
13353779 |
. |
T |
C |
. |
PASS |
0.0363000 |
0.0331000 |
0.0347000 |
0.0318000 |
0.0961000 |
0.0463000 |
35.67 |
57.44 |
34 |
229.11 |
58.82 |
26.47 |
0 |
26.47 |
0/1 |
| chr1 |
13353785 |
. |
GGG |
GAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.12 |
52.59 |
55 |
1000.00 |
15.51 |
61.82 |
1 |
61.82 |
0/1 |
| chr1 |
13353786 |
rs199553194 |
G |
A |
. |
PASS |
0.0182000 |
0.3617000 |
0.2530000 |
0.3141000 |
0.2025000 |
0.2085000 |
36.65 |
52.65 |
48 |
1000.00 |
19.85 |
70.83 |
1 |
70.83 |
0/1 |
| chr1 |
13353787 |
rs200531848 |
G |
A |
. |
PASS |
0.0166000 |
0.3184000 |
0.2163000 |
0.2714000 |
0.1595000 |
0.1777000 |
35.97 |
52.71 |
50 |
1000.00 |
19.43 |
70.00 |
1 |
70.00 |
0/1 |
| chr1 |
13353794 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
52.5 |
63 |
267.16 |
7.14 |
19.05 |
0 |
19.05 |
0/1 |
| chr1 |
13353799 |
. |
T |
A |
. |
PASS |
0.1346000 |
0.0692000 |
0.0407000 |
0.0596000 |
0.1544000 |
0.0954000 |
37.0 |
55.47 |
69 |
382.25 |
59.13 |
21.74 |
0 |
21.74 |
0/1 |
| chr1 |
13353802 |
. |
C |
G |
. |
PASS |
0.1346000 |
0.0692000 |
0.0407000 |
0.0596000 |
0.1544000 |
0.0954000 |
36.25 |
54.75 |
74 |
396.96 |
60.47 |
21.62 |
0 |
21.62 |
0/1 |
| chr1 |
13353841 |
rs201496009 |
C |
T |
. |
PASS |
0.0166000 |
0.0216000 |
0.0397000 |
0.0070000 |
0.0337000 |
0.0234000 |
36.11 |
57.7 |
108 |
746.24 |
35.19 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
13364810 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
52.55 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13364827 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.44 |
11 |
306.20 |
0.00 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
13364883 |
. |
TCG |
TCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
49.38 |
41 |
171.15 |
20.91 |
51.22 |
0 |
70.73 |
0/1 |
| chr1 |
13364883 |
. |
TCG |
TAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
49.38 |
41 |
171.15 |
21.95 |
19.51 |
0 |
70.73 |
0/1 |
| chr1 |
13364926 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.53 |
49.61 |
91 |
1000.00 |
8.71 |
56.04 |
0 |
56.04 |
0/1 |
| chr1 |
13364929 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.8 |
50.4 |
91 |
1000.00 |
2.23 |
65.93 |
0 |
65.93 |
0/1 |
| chr1 |
13364939 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.72 |
49.93 |
93 |
1000.00 |
8.40 |
46.24 |
0 |
46.24 |
0/1 |
| chr1 |
13365011 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
33.38 |
70 |
295.69 |
19.12 |
18.57 |
0 |
18.57 |
0/1 |
| chr1 |
13365032 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.43 |
40 |
431.92 |
10.00 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
13365169 |
. |
TCA |
TTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
30.88 |
23 |
190.70 |
11.96 |
34.78 |
0 |
34.78 |
0/1 |
| chr1 |
13365187 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
25.67 |
19 |
156.82 |
5.26 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
13365776 |
rs202229355 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
49.88 |
27 |
204.26 |
10.19 |
29.63 |
0 |
29.63 |
0/1 |
| chr1 |
13365921 |
rs199562274 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.14 |
23 |
190.70 |
26.09 |
30.43 |
0 |
30.43 |
0/1 |
| chr1 |
13365954 |
rs201245174 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.5 |
17 |
246.38 |
11.76 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
13368030 |
rs200317962 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.0 |
11 |
143.27 |
21.82 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
13368406 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.67 |
14 |
176.01 |
0.00 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
13368436 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.67 |
21 |
150.79 |
9.52 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
13368444 |
. |
ACA |
ATG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
55.21 |
22 |
682.94 |
16.75 |
86.36 |
0 |
86.36 |
0/1 |
| chr1 |
13368536 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.17 |
57.41 |
37 |
1000.00 |
5.22 |
78.38 |
0 |
78.38 |
0/1 |
| chr1 |
13368550 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.05 |
28 |
798.05 |
15.58 |
78.57 |
0 |
78.57 |
0/1 |
| chr1 |
13368552 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.67 |
29 |
130.86 |
48.28 |
20.69 |
0 |
20.69 |
0/1 |
| chr1 |
13368564 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.75 |
26 |
724.68 |
20.77 |
76.92 |
0 |
76.92 |
0/1 |
| chr1 |
13368588 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
59.89 |
23 |
262.23 |
34.78 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
13368622 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.5 |
22 |
147.78 |
81.82 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
13368628 |
rs199603036 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
38.29 |
19 |
198.58 |
9.02 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
13379394 |
. |
T |
C |
. |
PASS |
0.4607000 |
0.2795000 |
0.1399000 |
0.3310000 |
0.5930000 |
0.3708000 |
37.0 |
59.94 |
41 |
1000.00 |
1.25 |
85.37 |
0 |
85.37 |
0/1 |
| chr1 |
13379548 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.0 |
11 |
143.27 |
10.91 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
13381066 |
rs201862351 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.58 |
14 |
426.63 |
7.14 |
85.71 |
0 |
85.71 |
0/1 |
| chr1 |
13413926 |
rs202170459 |
A |
G |
. |
PASS |
0.1906000 |
0.4424000 |
0.4752000 |
0.4702000 |
0.4254000 |
0.3848000 |
36.23 |
44.94 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13413961 |
rs200141404 |
G |
C |
. |
PASS |
0.2451000 |
0.4885000 |
0.4256000 |
0.5050000 |
0.3804000 |
0.3938000 |
36.83 |
51.71 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13414059 |
rs141192612 |
C |
T |
. |
PASS |
0.0613000 |
0.3588000 |
0.3859000 |
0.3867000 |
0.2618000 |
0.2724000 |
36.32 |
57.61 |
159 |
1000.00 |
0.64 |
99.37 |
0 |
99.37 |
1/1 |
| chr1 |
13448180 |
rs199555791 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
50.0 |
43 |
1000.00 |
30.54 |
69.77 |
0 |
69.77 |
0/1 |
| chr1 |
13448183 |
. |
GCG |
GTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
49.79 |
41 |
1000.00 |
31.88 |
68.29 |
0 |
70.73 |
0/1 |
| chr1 |
13448199 |
rs143762964 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
52.45 |
57 |
1000.00 |
23.06 |
73.68 |
0 |
73.68 |
0/1 |
| chr1 |
13448283 |
rs80327699 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
55.75 |
216 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13448351 |
rs71183793 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
51.59 |
160 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13634704 |
rs201118136 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.0 |
48 |
73.67 |
37.50 |
12.50 |
0 |
12.50 |
0/1 |
| chr1 |
13634723 |
rs202107783 |
A |
G |
. |
PASS |
0.1460000 |
0.1095000 |
0.0794000 |
0.1054000 |
0.2178000 |
0.1334000 |
35.4 |
49.4 |
89 |
302.20 |
19.18 |
16.85 |
0 |
16.85 |
0/1 |
| chr1 |
13634797 |
rs200530087 |
C |
T |
. |
PASS |
0.0219000 |
0.0159000 |
0.0010000 |
0.0050000 |
0.0368000 |
0.0163740 |
36.29 |
50.18 |
170 |
153.94 |
30.59 |
10.00 |
0 |
10.00 |
0/1 |
| chr1 |
13695685 |
rs201167498 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
48.46 |
13 |
453.75 |
0.00 |
92.31 |
0 |
100.00 |
1/1 |
| chr1 |
13695787 |
rs202245256 |
C |
G |
. |
PASS |
0.9864000 |
0.9971000 |
0.9990000 |
0.9821000 |
0.9949000 |
0.9912000 |
37.0 |
53.26 |
83 |
1000.00 |
0.33 |
97.59 |
0 |
97.59 |
1/1 |
| chr1 |
13695816 |
rs148990958 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.73 |
55.89 |
127 |
1000.00 |
0.66 |
96.06 |
0 |
96.85 |
1/1 |
| chr1 |
13695974 |
rs142734546 |
T |
C |
. |
PASS |
0.9947000 |
0.9957000 |
0.9980000 |
0.9831000 |
0.9980000 |
0.9938000 |
35.91 |
60.14 |
22 |
859.44 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
13717050 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.75 |
14 |
255.41 |
0.00 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
13719052 |
rs141370897 |
T |
G |
. |
PASS |
0.3086000 |
0.3732000 |
0.2976000 |
0.3360000 |
0.3988000 |
0.3385000 |
37.0 |
46.57 |
16 |
207.62 |
0.00 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
13940864 |
rs2486188 |
C |
G |
. |
PASS |
0.9985000 |
0.9885000 |
1.0000000 |
0.9304000 |
0.9867000 |
0.9814000 |
36.34 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
14059395 |
rs33969518 |
T |
C |
. |
PASS |
0.0098000 |
0.2565000 |
0.2282000 |
0.2107000 |
0.2086000 |
0.1671000 |
37.0 |
70.0 |
31 |
375.46 |
0.54 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
14099763 |
rs10803426 |
C |
T |
. |
PASS |
0.2005000 |
0.5403000 |
0.3730000 |
0.3111000 |
0.2679000 |
0.3177000 |
37.0 |
70.0 |
23 |
441.32 |
4.68 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
14105139 |
rs2076324 |
T |
A |
. |
PASS |
0.2080000 |
0.5375000 |
0.3988000 |
0.3270000 |
0.4908000 |
0.3712000 |
37.0 |
70.0 |
37 |
478.56 |
3.96 |
40.54 |
0 |
40.54 |
0/1 |
| chr1 |
14105298 |
rs1203678 |
G |
A |
. |
PASS |
0.2012000 |
0.5389000 |
0.3730000 |
0.3101000 |
0.2618000 |
0.3163000 |
37.0 |
69.41 |
43 |
1000.00 |
4.51 |
79.07 |
0 |
79.07 |
0/1 |
| chr1 |
14106394 |
rs2308040,rs59028030 |
A |
ACTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
70.0 |
43 |
836.76 |
15.31 |
55.81 |
0 |
58.14 |
0/1 |
| chr1 |
14109114 |
rs1203651 |
A |
G |
. |
PASS |
0.2322000 |
0.5418000 |
0.3988000 |
0.3280000 |
0.4223000 |
0.3650000 |
36.5 |
70.0 |
65 |
762.37 |
3.72 |
36.92 |
0 |
36.92 |
0/1 |
| chr1 |
14143003 |
rs1046331 |
A |
G |
. |
PASS |
0.9319000 |
0.8573000 |
0.7073000 |
0.8569000 |
0.7270000 |
0.8213000 |
36.88 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
14149622 |
rs2697968 |
T |
C |
. |
PASS |
0.7307000 |
0.7723000 |
0.6210000 |
0.7893000 |
0.6718000 |
0.7147000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
14149844 |
rs1046333 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.57 |
14 |
545.15 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
14985358 |
rs7512426 |
C |
T |
. |
PASS |
0.3880000 |
0.3977000 |
0.4435000 |
0.4891000 |
0.5706000 |
0.4565000 |
34.88 |
70.0 |
67 |
1000.00 |
10.18 |
50.75 |
0 |
50.75 |
0/1 |
| chr1 |
15018660 |
rs3737686 |
C |
T |
. |
PASS |
0.1838000 |
0.3559000 |
0.4861000 |
0.5099000 |
0.5992000 |
0.4151000 |
37.0 |
70.0 |
13 |
53.71 |
46.15 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
15344403 |
rs869712 |
G |
T |
. |
PASS |
0.5098000 |
0.5807000 |
0.6925000 |
0.5408000 |
0.5644000 |
0.5733000 |
36.52 |
70.0 |
55 |
830.08 |
6.55 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
15386628 |
rs2073091 |
T |
C |
. |
PASS |
0.1188000 |
0.1873000 |
0.6151000 |
0.1700000 |
0.2883000 |
0.2716000 |
37.0 |
70.0 |
22 |
235.47 |
13.64 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
15390145 |
rs2076565 |
A |
G |
. |
PASS |
0.6301000 |
0.2435000 |
0.7133000 |
0.2406000 |
0.3497000 |
0.4603000 |
37.0 |
70.0 |
56 |
926.77 |
3.70 |
48.21 |
0 |
48.21 |
0/1 |
| chr1 |
15390178 |
rs2076564 |
C |
T |
. |
PASS |
0.5908000 |
0.2392000 |
0.6746000 |
0.2376000 |
0.3078000 |
0.4327000 |
35.0 |
70.0 |
45 |
786.53 |
2.22 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
15390211 |
rs2076563 |
G |
A |
. |
PASS |
0.6014000 |
0.2435000 |
0.6736000 |
0.2435000 |
0.3088000 |
0.4373000 |
36.14 |
70.0 |
27 |
459.04 |
2.65 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
15427982 |
rs502918 |
G |
A |
. |
PASS |
0.4221000 |
0.6081000 |
0.8393000 |
0.5905000 |
0.5879000 |
0.5980000 |
36.4 |
70.0 |
59 |
1000.00 |
3.14 |
67.80 |
0 |
67.80 |
0/1 |
| chr1 |
15428358 |
rs477953 |
T |
C |
. |
PASS |
0.8782000 |
0.9467000 |
0.9901000 |
0.9483000 |
0.9796000 |
0.9441000 |
37.0 |
60.0 |
12 |
98.49 |
33.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
15430031 |
rs45547637 |
A |
T |
. |
PASS |
0.0030000 |
0.0130000 |
0.0000000 |
0.0378000 |
0.0153000 |
0.0131790 |
37.0 |
70.0 |
30 |
416.12 |
16.92 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
15439083 |
rs140963536 |
A |
AAGGTCTTTTTTTTCTTCTCCCAGCGGC |
. |
PASS |
0.4735000 |
0.4308000 |
0.3204000 |
0.5040000 |
0.4335000 |
0.4351000 |
36.33 |
70.0 |
32 |
225.58 |
56.25 |
21.88 |
0 |
28.12 |
0/1 |
| chr1 |
15497727 |
rs6429722 |
T |
C |
. |
PASS |
0.9085000 |
0.9582000 |
0.9940000 |
0.9523000 |
0.9847000 |
0.9563000 |
36.04 |
70.0 |
68 |
783.09 |
0.24 |
36.76 |
0 |
36.76 |
0/1 |
| chr1 |
15541537 |
rs3753314 |
C |
T |
. |
PASS |
0.6914000 |
0.9035000 |
0.9762000 |
0.8857000 |
0.8967000 |
0.8572000 |
35.5 |
69.58 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
15546077 |
rs3753313 |
G |
A |
. |
PASS |
0.0741000 |
0.2003000 |
0.0754000 |
0.3499000 |
0.3661000 |
0.2043000 |
35.0 |
70.0 |
55 |
756.44 |
0.76 |
43.64 |
0 |
43.64 |
0/1 |
| chr1 |
15578195 |
rs1622686 |
T |
C |
. |
PASS |
0.6838000 |
0.3372000 |
0.4127000 |
0.4105000 |
0.5634000 |
0.5028000 |
37.0 |
70.0 |
12 |
182.03 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
15613478 |
rs536364 |
G |
A |
. |
PASS |
0.5840000 |
0.5865000 |
0.6508000 |
0.5895000 |
0.4632000 |
0.5753000 |
36.57 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
15613643 |
rs534653 |
T |
C |
. |
PASS |
0.6717000 |
0.6974000 |
0.8194000 |
0.7038000 |
0.7301000 |
0.7228000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
15616139 |
rs486557 |
G |
A |
. |
PASS |
0.2073000 |
0.2089000 |
0.0417000 |
0.3260000 |
0.2587000 |
0.2081000 |
35.8 |
70.0 |
95 |
1000.00 |
5.68 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
15616183 |
rs487338 |
T |
C |
. |
PASS |
0.6225000 |
0.3501000 |
0.3026000 |
0.4185000 |
0.5327000 |
0.4619000 |
36.68 |
70.0 |
63 |
1000.00 |
0.67 |
60.32 |
0 |
60.32 |
0/1 |
| chr1 |
15651062 |
rs3765356 |
A |
G |
. |
PASS |
0.3782000 |
0.3573000 |
0.0724000 |
0.3469000 |
0.3967000 |
0.3111000 |
36.54 |
70.0 |
71 |
827.84 |
1.95 |
36.62 |
0 |
36.62 |
0/1 |
| chr1 |
15653503 |
rs7532559 |
A |
G |
. |
PASS |
0.4304000 |
0.3573000 |
0.0724000 |
0.3469000 |
0.3967000 |
0.3249000 |
37.0 |
70.0 |
17 |
166.99 |
3.92 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
15653563 |
rs3765357 |
C |
T |
. |
PASS |
0.1293000 |
0.3228000 |
0.0486000 |
0.3290000 |
0.3395000 |
0.2210000 |
34.47 |
70.0 |
45 |
577.69 |
3.04 |
42.22 |
0 |
42.22 |
0/1 |
| chr1 |
15655944 |
rs56017972 |
G |
A |
. |
PASS |
0.0015000 |
0.0000000 |
0.0000000 |
0.0050000 |
0.0000000 |
0.0013978 |
36.17 |
70.0 |
74 |
932.12 |
0.75 |
39.19 |
0 |
39.19 |
0/1 |
| chr1 |
15668276 |
rs763821 |
G |
A |
. |
PASS |
0.4849000 |
0.4078000 |
0.0407000 |
0.4006000 |
0.3722000 |
0.3458000 |
37.0 |
70.0 |
42 |
676.52 |
5.71 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
15687059 |
rs4661330 |
A |
G |
. |
PASS |
0.2579000 |
0.2147000 |
0.2887000 |
0.2853000 |
0.2035000 |
0.2530000 |
37.0 |
70.0 |
39 |
602.00 |
1.71 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
15694129 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
29.8 |
70.0 |
26 |
57.95 |
146.15 |
19.23 |
0 |
19.23 |
0/1 |
| chr1 |
15702297 |
rs2496342 |
T |
G |
. |
PASS |
0.7693000 |
0.3055000 |
0.2937000 |
0.2644000 |
0.3681000 |
0.4295000 |
36.4 |
70.0 |
44 |
654.34 |
5.45 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
15707137 |
rs3737690 |
C |
T |
. |
PASS |
0.0121000 |
0.0865000 |
0.1518000 |
0.1491000 |
0.2505000 |
0.1246000 |
37.0 |
70.0 |
19 |
411.58 |
8.77 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
15707984 |
rs2473333 |
G |
A |
. |
PASS |
0.2859000 |
0.1960000 |
0.2589000 |
0.2336000 |
0.3589000 |
0.2718000 |
37.0 |
70.0 |
27 |
345.74 |
9.43 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
15708540 |
rs1010294 |
A |
G |
. |
PASS |
0.7700000 |
0.3055000 |
0.2589000 |
0.2624000 |
0.3671000 |
0.4221000 |
36.39 |
70.0 |
105 |
1000.00 |
4.97 |
56.19 |
0 |
56.19 |
0/1 |
| chr1 |
15724003 |
rs2253371 |
A |
G |
. |
PASS |
0.4342000 |
0.2248000 |
0.2540000 |
0.2594000 |
0.3640000 |
0.3201000 |
36.0 |
70.0 |
22 |
390.54 |
6.06 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
15724033 |
rs2253372 |
A |
G |
. |
PASS |
0.9062000 |
0.5807000 |
0.7063000 |
0.7356000 |
0.6933000 |
0.7450000 |
35.0 |
70.0 |
11 |
173.03 |
0.00 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
15755248 |
rs3765372 |
C |
T |
. |
PASS |
0.0424000 |
0.1671000 |
0.2460000 |
0.1501000 |
0.2873000 |
0.1701000 |
36.5 |
70.0 |
54 |
795.47 |
7.41 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
15769876 |
rs35149641 |
G |
GC |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
17 |
659.02 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
15788269 |
rs3737696 |
A |
C |
. |
PASS |
0.5469000 |
0.6916000 |
0.7440000 |
0.7376000 |
0.7096000 |
0.6767000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
15812432 |
rs6429745 |
A |
G |
. |
PASS |
0.9773000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9932000 |
36.54 |
69.9 |
155 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
15813751 |
rs2011159 |
C |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.37 |
69.47 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
15813836 |
rs61742388 |
T |
C |
. |
PASS |
0.0477000 |
0.0043000 |
0.0079000 |
0.0060000 |
0.0010000 |
0.0161740 |
37.0 |
69.66 |
102 |
1000.00 |
9.26 |
56.86 |
0 |
56.86 |
0/1 |
| chr1 |
16058489 |
rs72647153 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0003994 |
36.48 |
70.0 |
176 |
1000.00 |
5.37 |
39.20 |
0 |
39.20 |
0/1 |
| chr1 |
16096893 |
rs12146078 |
C |
T |
. |
PASS |
0.0976000 |
0.2161000 |
0.0784000 |
0.1968000 |
0.4213000 |
0.1933000 |
36.62 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16096934 |
rs10927851 |
C |
T |
. |
PASS |
0.3843000 |
0.6931000 |
0.8284000 |
0.6501000 |
0.7556000 |
0.6424000 |
36.27 |
69.97 |
132 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16119833 |
rs34748580 |
GA |
G |
. |
PASS |
0.4796000 |
0.3718000 |
0.0258000 |
0.3579000 |
0.4182000 |
0.3369000 |
35.8 |
70.0 |
10 |
360.66 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16133838 |
rs66673012 |
A |
T |
. |
PASS |
0.3638000 |
0.0965000 |
0.0099000 |
0.0994000 |
0.0757000 |
0.1462000 |
35.97 |
69.89 |
79 |
1000.00 |
11.21 |
44.30 |
0 |
44.30 |
0/1 |
| chr1 |
16133987 |
rs7417535 |
T |
C |
. |
PASS |
0.3646000 |
0.0965000 |
0.0099000 |
0.0994000 |
0.0757000 |
0.1464000 |
36.08 |
69.03 |
126 |
1000.00 |
0.44 |
51.59 |
0 |
51.59 |
0/1 |
| chr1 |
16134072 |
rs61744357 |
C |
T |
. |
PASS |
0.3638000 |
0.0965000 |
0.0099000 |
0.0994000 |
0.0757000 |
0.1462000 |
36.65 |
69.84 |
146 |
1000.00 |
4.76 |
47.26 |
0 |
47.26 |
0/1 |
| chr1 |
16154691 |
rs6676646 |
A |
G |
. |
PASS |
0.3971000 |
0.1354000 |
0.0109000 |
0.1451000 |
0.1145000 |
0.1773000 |
34.82 |
70.0 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16154699 |
rs369618828,rs113870177 |
ACACT |
A |
. |
PASS |
0.3971000 |
0.1354000 |
0.0109000 |
0.1451000 |
0.1145000 |
0.1773000 |
35.92 |
70.0 |
12 |
443.19 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16155107 |
rs10927860 |
G |
C |
. |
PASS |
0.9773000 |
0.6542000 |
0.7550000 |
0.8529000 |
0.8661000 |
0.8411000 |
37.0 |
69.83 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16167799 |
rs12135073 |
A |
G |
. |
PASS |
0.0182000 |
0.2680000 |
0.0060000 |
0.2813000 |
0.2495000 |
0.1484000 |
37.0 |
68.95 |
25 |
685.92 |
19.37 |
76.00 |
0 |
76.00 |
0/1 |
| chr1 |
16186873 |
. |
G |
GGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
13 |
54.88 |
10.26 |
23.08 |
0 |
30.77 |
0/1 |
| chr1 |
16186937 |
rs71574142 |
AGT |
A |
. |
PASS |
0.1263000 |
0.3761000 |
0.1111000 |
0.3062000 |
0.2812000 |
0.2242000 |
32.25 |
70.0 |
12 |
66.91 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
16256007 |
rs848209 |
T |
C |
. |
PASS |
0.9758000 |
0.7118000 |
0.3214000 |
0.5577000 |
0.5941000 |
0.6490000 |
36.28 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16259813 |
rs848210 |
A |
G |
. |
PASS |
0.9758000 |
0.7118000 |
0.3214000 |
0.5577000 |
0.5941000 |
0.6490000 |
36.18 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16262465 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
36 |
54.88 |
172.22 |
13.89 |
0 |
16.67 |
0/1 |
| chr1 |
16262471 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
29.0 |
70.0 |
32 |
69.66 |
162.50 |
18.75 |
0 |
18.75 |
0/1 |
| chr1 |
16265403 |
rs115404746 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0005990 |
36.48 |
70.0 |
99 |
1000.00 |
1.93 |
46.46 |
0 |
46.46 |
0/1 |
| chr1 |
16265422 |
rs848214 |
A |
G |
. |
PASS |
0.6679000 |
0.6902000 |
0.3244000 |
0.5537000 |
0.5920000 |
0.5641000 |
36.85 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16265904 |
rs41269155 |
T |
A |
. |
PASS |
0.0613000 |
0.0375000 |
0.0079000 |
0.0616000 |
0.0481000 |
0.0447000 |
36.52 |
69.6 |
103 |
1000.00 |
2.68 |
48.54 |
0 |
48.54 |
0/1 |
| chr1 |
16269477 |
rs57569573 |
T |
TG |
. |
PASS |
0.4357000 |
0.0749000 |
0.0040000 |
0.0696000 |
0.0521000 |
0.1504000 |
35.0 |
70.0 |
16 |
351.24 |
11.36 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
16269737 |
rs4661672 |
C |
T |
. |
PASS |
0.1112000 |
0.0548000 |
0.0040000 |
0.0626000 |
0.0481000 |
0.0597000 |
36.0 |
70.0 |
27 |
375.50 |
7.41 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
16271156 |
rs12134932 |
C |
A |
. |
PASS |
0.2073000 |
0.0562000 |
0.0010000 |
0.0785000 |
0.0276000 |
0.0839000 |
37.0 |
70.0 |
170 |
1000.00 |
6.33 |
46.47 |
0 |
47.65 |
0/1 |
| chr1 |
16272250 |
rs848217 |
A |
G |
. |
PASS |
0.4720000 |
0.6311000 |
0.3175000 |
0.5020000 |
0.5440000 |
0.4830000 |
36.43 |
69.68 |
138 |
1000.00 |
6.21 |
45.65 |
0 |
45.65 |
0/1 |
| chr1 |
16296695 |
rs41339145 |
T |
G |
. |
PASS |
0.3245000 |
0.1196000 |
0.0813000 |
0.1362000 |
0.2321000 |
0.1913000 |
37.0 |
70.0 |
15 |
168.85 |
6.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
16342237 |
rs1739840 |
A |
G |
. |
PASS |
0.7216000 |
0.4582000 |
0.7639000 |
0.5944000 |
0.6421000 |
0.6526000 |
36.81 |
70.0 |
120 |
1000.00 |
2.42 |
51.67 |
0 |
51.67 |
0/1 |
| chr1 |
16342350 |
rs761759 |
A |
T |
. |
PASS |
0.7216000 |
0.4582000 |
0.7639000 |
0.5944000 |
0.6431000 |
0.6528000 |
35.0 |
70.0 |
12 |
165.87 |
16.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
16344360 |
rs732286 |
A |
G |
. |
PASS |
0.7103000 |
0.4553000 |
0.7639000 |
0.5934000 |
0.6421000 |
0.6490000 |
36.32 |
69.62 |
138 |
1000.00 |
10.28 |
38.41 |
0 |
38.41 |
0/1 |
| chr1 |
16344402 |
rs945416 |
G |
A |
. |
PASS |
0.7103000 |
0.4553000 |
0.7639000 |
0.5934000 |
0.6421000 |
0.6490000 |
36.75 |
70.0 |
108 |
1000.00 |
6.02 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
16344494 |
rs1572381 |
G |
A |
. |
PASS |
0.7088000 |
0.4553000 |
0.7639000 |
0.5924000 |
0.6421000 |
0.6484000 |
37.0 |
70.0 |
25 |
477.06 |
6.86 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
16345619 |
rs945422 |
T |
C |
. |
PASS |
0.7648000 |
0.4524000 |
0.7718000 |
0.5676000 |
0.6319000 |
0.6573000 |
36.25 |
70.0 |
78 |
1000.00 |
0.00 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
16350262 |
rs1537803 |
A |
G |
. |
PASS |
0.0817000 |
0.0447000 |
0.0060000 |
0.0755000 |
0.0481000 |
0.0535000 |
36.61 |
70.0 |
73 |
1000.00 |
4.42 |
42.47 |
0 |
42.47 |
0/1 |
| chr1 |
16351137 |
rs9442190 |
C |
G |
. |
PASS |
0.7194000 |
0.4467000 |
0.7688000 |
0.5636000 |
0.6299000 |
0.6428000 |
37.0 |
69.0 |
13 |
426.54 |
2.56 |
92.31 |
0 |
92.31 |
0/1 |
| chr1 |
16351275 |
rs10927887 |
A |
G |
. |
PASS |
0.7201000 |
0.4467000 |
0.7688000 |
0.5636000 |
0.6299000 |
0.6430000 |
36.57 |
69.38 |
215 |
1000.00 |
6.90 |
52.09 |
0 |
52.09 |
0/1 |
| chr1 |
16353400 |
rs9442216 |
T |
C |
. |
PASS |
0.7708000 |
0.5994000 |
0.9752000 |
0.6750000 |
0.6800000 |
0.7512000 |
34.0 |
69.92 |
20 |
372.55 |
6.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
16354280 |
rs10927889 |
G |
C |
. |
PASS |
0.6498000 |
0.5346000 |
0.8750000 |
0.5934000 |
0.5194000 |
0.6424000 |
35.0 |
69.83 |
11 |
168.88 |
3.03 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
16354590 |
rs12126269 |
A |
T |
. |
PASS |
0.1014000 |
0.1960000 |
0.2123000 |
0.1879000 |
0.1033000 |
0.1546000 |
35.59 |
70.0 |
99 |
1000.00 |
2.85 |
51.52 |
0 |
51.52 |
0/1 |
| chr1 |
16355525 |
rs7366320 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
69.88 |
22 |
223.46 |
11.36 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
16355577 |
rs59235129 |
TGGG |
T |
. |
PASS |
0.0605000 |
0.0086000 |
0.0020000 |
0.0199000 |
0.0031000 |
0.0179710 |
36.5 |
69.92 |
55 |
257.93 |
61.82 |
21.82 |
0 |
21.82 |
0/1 |
| chr1 |
16355614 |
rs45457595 |
G |
A |
. |
PASS |
0.0825000 |
0.0447000 |
0.0069000 |
0.0755000 |
0.0481000 |
0.0539000 |
36.27 |
66.42 |
99 |
1000.00 |
20.20 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
16355877 |
rs34398185 |
G |
A |
. |
PASS |
0.0809000 |
0.0447000 |
0.0060000 |
0.0755000 |
0.0481000 |
0.0533000 |
37.0 |
70.0 |
42 |
676.52 |
17.62 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
16356187 |
rs1972359 |
C |
T |
. |
PASS |
0.0809000 |
0.0447000 |
0.0060000 |
0.0755000 |
0.0481000 |
0.0533000 |
34.0 |
70.0 |
40 |
312.35 |
8.33 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
16356497 |
rs7411607 |
C |
G |
. |
PASS |
0.0809000 |
0.0447000 |
0.0060000 |
0.0755000 |
0.0481000 |
0.0533000 |
37.0 |
69.87 |
171 |
1000.00 |
4.77 |
43.86 |
0 |
43.86 |
0/1 |
| chr1 |
16356501 |
rs1805152 |
G |
A |
. |
PASS |
0.7496000 |
0.4467000 |
0.7669000 |
0.5577000 |
0.6268000 |
0.6486000 |
35.72 |
69.84 |
168 |
1000.00 |
5.52 |
44.64 |
0 |
44.64 |
0/1 |
| chr1 |
16356522 |
rs34471231 |
A |
G |
. |
PASS |
0.0809000 |
0.0447000 |
0.0060000 |
0.0755000 |
0.0481000 |
0.0533000 |
36.68 |
69.77 |
157 |
1000.00 |
3.99 |
47.13 |
0 |
47.13 |
0/1 |
| chr1 |
16356531 |
rs35747151 |
G |
A |
. |
PASS |
0.0809000 |
0.0447000 |
0.0060000 |
0.0755000 |
0.0481000 |
0.0533000 |
36.51 |
69.75 |
153 |
1000.00 |
4.14 |
47.71 |
0 |
47.71 |
0/1 |
| chr1 |
16356533 |
rs35154011 |
T |
C |
. |
PASS |
0.0809000 |
0.0447000 |
0.0060000 |
0.0755000 |
0.0481000 |
0.0533000 |
37.0 |
69.76 |
150 |
1000.00 |
4.95 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
16356702 |
rs34292424 |
G |
A |
. |
PASS |
0.0802000 |
0.0447000 |
0.0060000 |
0.0765000 |
0.0481000 |
0.0533000 |
37.0 |
65.5 |
11 |
185.04 |
0.00 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
16356869 |
rs12729970 |
C |
T |
. |
PASS |
0.0809000 |
0.0461000 |
0.0060000 |
0.0775000 |
0.0481000 |
0.0539000 |
37.0 |
70.0 |
10 |
188.05 |
13.33 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
16356915 |
rs12729991 |
C |
G |
. |
PASS |
0.0817000 |
0.0447000 |
0.0060000 |
0.0775000 |
0.0481000 |
0.0539000 |
36.0 |
70.0 |
22 |
386.39 |
12.12 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
16357147 |
rs12140223 |
C |
T |
. |
PASS |
0.0802000 |
0.0447000 |
0.0060000 |
0.0775000 |
0.0481000 |
0.0535000 |
35.82 |
67.49 |
99 |
1000.00 |
2.61 |
51.52 |
0 |
51.52 |
0/1 |
| chr1 |
16358134 |
rs2015515 |
T |
C |
. |
PASS |
0.0809000 |
0.0447000 |
0.0060000 |
0.0775000 |
0.0481000 |
0.0537000 |
35.29 |
70.0 |
14 |
205.77 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
16358148 |
rs2015509 |
T |
C |
. |
PASS |
0.7693000 |
0.5951000 |
0.9742000 |
0.6690000 |
0.6820000 |
0.7492000 |
35.67 |
70.0 |
21 |
268.24 |
12.70 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
16358366 |
rs12141388 |
C |
T |
. |
PASS |
0.0817000 |
0.0447000 |
0.0060000 |
0.0785000 |
0.0481000 |
0.0541000 |
36.14 |
69.57 |
56 |
371.75 |
17.86 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
16358932 |
rs10803407 |
T |
C |
. |
PASS |
0.7693000 |
0.5951000 |
0.9742000 |
0.6690000 |
0.6810000 |
0.7490000 |
36.64 |
70.0 |
118 |
1000.00 |
3.26 |
56.78 |
0 |
56.78 |
0/1 |
| chr1 |
16359050 |
rs71493532 |
GCA |
GAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
70.0 |
130 |
1000.00 |
2.28 |
47.69 |
0 |
50.00 |
0/1 |
| chr1 |
16359114 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
42 |
147.10 |
161.90 |
19.05 |
0 |
19.05 |
0/1 |
| chr1 |
16359119 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
30.14 |
70.0 |
37 |
96.37 |
162.16 |
18.92 |
0 |
18.92 |
0/1 |
| chr1 |
16359123 |
rs9442217 |
A |
G |
. |
PASS |
0.7693000 |
0.5951000 |
0.9742000 |
0.6690000 |
0.6810000 |
0.7490000 |
36.33 |
70.0 |
27 |
599.37 |
7.41 |
62.96 |
0 |
66.67 |
0/1 |
| chr1 |
16359176 |
rs35881888 |
C |
T |
. |
PASS |
0.0794000 |
0.0447000 |
0.0060000 |
0.0775000 |
0.0481000 |
0.0533000 |
37.0 |
70.0 |
13 |
304.33 |
0.00 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
16360137 |
rs12746751 |
C |
T |
. |
PASS |
0.1036000 |
0.0504000 |
0.0060000 |
0.0775000 |
0.0481000 |
0.0605000 |
35.91 |
64.94 |
74 |
1000.00 |
13.19 |
44.59 |
0 |
44.59 |
0/1 |
| chr1 |
16360190 |
rs28418375 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.13 |
75 |
1000.00 |
12.00 |
50.67 |
0 |
50.67 |
0/1 |
| chr1 |
16362621 |
rs2009044 |
G |
A |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
69.92 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16362807 |
rs4083860 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.78 |
64.22 |
112 |
1000.00 |
1.15 |
52.68 |
0 |
52.68 |
0/1 |
| chr1 |
16363048 |
rs1889786 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.83 |
68.97 |
85 |
944.10 |
0.08 |
34.12 |
0 |
42.35 |
0/1 |
| chr1 |
16363128 |
rs2863424 |
T |
G |
. |
PASS |
0.0030000 |
0.0058000 |
0.0298000 |
0.0060000 |
0.0072000 |
0.0101840 |
37.0 |
70.0 |
98 |
127.88 |
73.65 |
11.22 |
0 |
11.22 |
0/1 |
| chr1 |
16363132 |
rs1889787 |
C |
T |
. |
PASS |
0.1286000 |
0.1974000 |
0.2183000 |
0.1889000 |
0.1022000 |
0.1631000 |
36.5 |
69.54 |
99 |
660.03 |
21.72 |
24.24 |
0 |
24.24 |
0/1 |
| chr1 |
16363183 |
rs78528114 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.17 |
162 |
937.74 |
10.12 |
21.60 |
0 |
21.60 |
0/1 |
| chr1 |
16363243 |
rs35030434 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
66.06 |
129 |
945.67 |
0.14 |
25.58 |
0 |
25.58 |
0/1 |
| chr1 |
16366084 |
rs71631762 |
T |
A |
. |
PASS |
0.0424000 |
0.0187000 |
0.0020000 |
0.0308000 |
0.0102000 |
0.0224000 |
37.0 |
70.0 |
18 |
76.29 |
77.78 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
16366106 |
rs11487758 |
A |
G |
. |
PASS |
0.0590000 |
0.0130000 |
0.0040000 |
0.0239000 |
0.0184000 |
0.0266000 |
37.0 |
70.0 |
27 |
53.35 |
66.67 |
14.81 |
0 |
14.81 |
0/1 |
| chr1 |
16366411 |
rs3085800 |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.97 |
69.93 |
66 |
981.40 |
3.64 |
45.45 |
1 |
45.45 |
0/1 |
| chr1 |
16366411 |
. |
CTGAG |
CA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
69 |
941.15 |
4.90 |
42.03 |
1 |
42.03 |
0/1 |
| chr1 |
16366412 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.97 |
69.93 |
66 |
981.41 |
3.64 |
45.45 |
1 |
45.45 |
0/1 |
| chr1 |
16366413 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.97 |
69.93 |
69 |
972.38 |
0.58 |
43.48 |
1 |
43.48 |
0/1 |
| chr1 |
16366415 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.17 |
69.93 |
71 |
941.15 |
2.04 |
40.85 |
1 |
40.85 |
0/1 |
| chr1 |
16366417 |
rs61628506 |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.72 |
69.93 |
73 |
912.56 |
8.97 |
39.73 |
1 |
39.73 |
0/1 |
| chr1 |
16366417 |
. |
TGG |
TA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
72 |
912.56 |
11.51 |
38.89 |
1 |
38.89 |
0/1 |
| chr1 |
16366419 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.34 |
69.93 |
71 |
917.13 |
8.94 |
40.85 |
1 |
40.85 |
0/1 |
| chr1 |
16371932 |
rs6604909 |
A |
C |
. |
PASS |
0.4607000 |
0.9006000 |
0.9990000 |
0.9384000 |
0.9417000 |
0.8199000 |
37.0 |
70.0 |
12 |
177.88 |
16.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
16372282 |
rs67016480 |
GT |
G |
. |
PASS |
0.2564000 |
0.3343000 |
0.4315000 |
0.3956000 |
0.4049000 |
0.3594000 |
34.11 |
67.78 |
24 |
235.64 |
16.67 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
16374330 |
rs945403 |
A |
G |
. |
PASS |
0.5363000 |
0.9121000 |
0.9990000 |
0.9384000 |
0.9417000 |
0.8415000 |
36.37 |
70.0 |
26 |
670.90 |
14.57 |
73.08 |
0 |
73.08 |
0/1 |
| chr1 |
16374533 |
rs2014562 |
G |
C |
. |
PASS |
0.7231000 |
0.9337000 |
0.9990000 |
0.9394000 |
0.9417000 |
0.8940000 |
36.83 |
70.0 |
146 |
1000.00 |
5.29 |
48.63 |
0 |
48.63 |
0/1 |
| chr1 |
16374590 |
rs2282263 |
C |
T |
. |
PASS |
0.0961000 |
0.0519000 |
0.0109000 |
0.1044000 |
0.0501000 |
0.0655000 |
34.41 |
70.0 |
72 |
1000.00 |
1.35 |
48.61 |
0 |
51.39 |
0/1 |
| chr1 |
16374972 |
rs6696349 |
T |
G |
. |
PASS |
0.4153000 |
0.0850000 |
0.0109000 |
0.1074000 |
0.0532000 |
0.1556000 |
35.8 |
65.8 |
68 |
1000.00 |
13.82 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
16375062 |
rs71493533 |
GCA |
GGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.66 |
68.3 |
127 |
1000.00 |
0.18 |
41.73 |
0 |
41.73 |
0/1 |
| chr1 |
16375132 |
rs12118326 |
C |
T |
. |
PASS |
0.1657000 |
0.0605000 |
0.0109000 |
0.1064000 |
0.0532000 |
0.0861000 |
35.5 |
69.38 |
48 |
789.52 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
16375510 |
rs11588392 |
G |
A |
. |
PASS |
0.2731000 |
0.0548000 |
0.0010000 |
0.0487000 |
0.0245000 |
0.0944000 |
35.57 |
70.0 |
82 |
1000.00 |
9.29 |
51.22 |
0 |
51.22 |
0/1 |
| chr1 |
16376191 |
rs7367494 |
C |
T |
. |
PASS |
0.4939000 |
0.9107000 |
0.9980000 |
0.9384000 |
0.9417000 |
0.8299000 |
37.0 |
67.65 |
37 |
691.57 |
4.86 |
54.05 |
0 |
54.05 |
0/1 |
| chr1 |
16376230 |
rs59006537 |
A |
AT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.24 |
46 |
857.74 |
6.26 |
54.35 |
0 |
54.35 |
0/1 |
| chr1 |
16376232 |
rs59924562 |
A |
T |
. |
PASS |
0.4849000 |
0.8703000 |
0.8224000 |
0.8598000 |
0.8569000 |
0.7542000 |
36.04 |
68.24 |
44 |
851.18 |
5.27 |
56.82 |
0 |
56.82 |
0/1 |
| chr1 |
16376238 |
rs34589727 |
TC |
T |
. |
PASS |
0.4939000 |
0.9107000 |
0.9990000 |
0.9384000 |
0.9417000 |
0.8301000 |
37.0 |
68.31 |
46 |
905.54 |
4.68 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
16376278 |
rs7365182 |
G |
A |
. |
PASS |
0.4856000 |
0.9107000 |
0.9990000 |
0.9384000 |
0.9417000 |
0.8279000 |
35.11 |
67.89 |
37 |
613.79 |
7.40 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
16376319 |
rs7368151 |
T |
C |
. |
PASS |
0.4939000 |
0.9107000 |
0.9990000 |
0.9384000 |
0.9417000 |
0.8301000 |
37.0 |
69.96 |
41 |
846.61 |
3.05 |
58.54 |
0 |
58.54 |
0/1 |
| chr1 |
16376458 |
rs7368166 |
T |
C |
. |
PASS |
0.4947000 |
0.9107000 |
0.9980000 |
0.9384000 |
0.9417000 |
0.8301000 |
37.0 |
70.0 |
20 |
241.49 |
5.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
16376953 |
rs10927895 |
C |
T |
. |
PASS |
0.0477000 |
0.0447000 |
0.0099000 |
0.0944000 |
0.0511000 |
0.0497000 |
36.25 |
70.0 |
21 |
560.64 |
5.36 |
76.19 |
0 |
76.19 |
0/1 |
| chr1 |
16377363 |
rs185451420 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.88 |
63.31 |
178 |
732.41 |
20.86 |
17.98 |
0 |
17.98 |
0/1 |
| chr1 |
16377598 |
rs149762502 |
T |
TG |
. |
PASS |
0.1725000 |
0.0605000 |
0.0099000 |
0.0974000 |
0.0532000 |
0.0859000 |
36.66 |
70.0 |
72 |
1000.00 |
16.11 |
48.61 |
0 |
48.61 |
0/1 |
| chr1 |
16377935 |
rs6650117 |
A |
G |
. |
PASS |
0.2148000 |
0.0836000 |
0.0099000 |
0.1203000 |
0.1022000 |
0.1144000 |
37.0 |
70.0 |
21 |
238.49 |
17.86 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
16377998 |
. |
CCA |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
69.52 |
103 |
1000.00 |
1.12 |
32.04 |
0 |
32.04 |
0/1 |
| chr1 |
16378093 |
rs41269167 |
A |
G |
. |
PASS |
0.2141000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.0980000 |
37.0 |
69.31 |
94 |
1000.00 |
10.28 |
38.30 |
0 |
38.30 |
0/1 |
| chr1 |
16378098 |
. |
GGC |
GCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
69.34 |
94 |
1000.00 |
9.41 |
40.43 |
0 |
40.43 |
0/1 |
| chr1 |
16378215 |
rs5252 |
C |
T |
. |
PASS |
0.2133000 |
0.0677000 |
0.0099000 |
0.0994000 |
0.0532000 |
0.0980000 |
36.47 |
69.8 |
216 |
1000.00 |
4.34 |
52.78 |
0 |
52.78 |
0/1 |
| chr1 |
16378331 |
rs41269169 |
G |
C |
. |
PASS |
0.2141000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.0980000 |
36.41 |
69.8 |
90 |
1000.00 |
5.47 |
45.56 |
0 |
45.56 |
0/1 |
| chr1 |
16378339 |
rs41269171 |
C |
G |
. |
PASS |
0.2141000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.0980000 |
36.03 |
69.78 |
80 |
1000.00 |
8.04 |
46.25 |
0 |
46.25 |
0/1 |
| chr1 |
16378725 |
rs12140311 |
A |
T |
. |
PASS |
0.2141000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.0980000 |
37.0 |
69.81 |
95 |
1000.00 |
5.29 |
38.95 |
0 |
38.95 |
0/1 |
| chr1 |
16378931 |
rs56334930 |
A |
G |
. |
PASS |
0.2239000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.1006000 |
37.0 |
69.28 |
73 |
792.06 |
2.85 |
34.25 |
0 |
34.25 |
0/1 |
| chr1 |
16378936 |
rs112905730 |
AG |
A |
. |
PASS |
0.2239000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.1006000 |
35.54 |
69.31 |
68 |
801.29 |
8.82 |
38.24 |
1 |
38.24 |
0/1 |
| chr1 |
16378936 |
. |
AGG |
AA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
70 |
798.12 |
8.57 |
37.14 |
1 |
37.14 |
0/1 |
| chr1 |
16378938 |
. |
G |
A |
. |
PASS |
0.2239000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.1006000 |
36.52 |
69.28 |
67 |
798.12 |
11.46 |
37.31 |
1 |
37.31 |
0/1 |
| chr1 |
16378945 |
rs56331467 |
C |
T |
. |
PASS |
0.2239000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.1006000 |
36.5 |
69.25 |
64 |
765.38 |
6.25 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
16378951 |
rs56152056 |
T |
C |
. |
PASS |
0.2239000 |
0.0677000 |
0.0099000 |
0.0984000 |
0.0532000 |
0.1006000 |
37.0 |
69.14 |
58 |
670.13 |
8.21 |
36.21 |
0 |
36.21 |
0/1 |
| chr1 |
16378954 |
rs56112410 |
G |
A |
. |
PASS |
0.1362000 |
0.0562000 |
0.0099000 |
0.0954000 |
0.0511000 |
0.0749000 |
36.33 |
69.0 |
53 |
547.86 |
5.66 |
33.96 |
0 |
33.96 |
0/1 |
| chr1 |
16378980 |
rs56327038 |
G |
C |
. |
PASS |
0.2254000 |
0.0735000 |
0.0099000 |
0.1054000 |
0.0542000 |
0.1034000 |
37.0 |
69.67 |
30 |
123.71 |
46.67 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
16380196 |
rs5253 |
T |
C |
. |
PASS |
0.6460000 |
0.9179000 |
0.8353000 |
0.9692000 |
0.9100000 |
0.8383000 |
36.62 |
67.54 |
127 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16380243 |
rs2275166 |
A |
G |
. |
PASS |
0.8200000 |
0.5519000 |
0.8056000 |
0.6262000 |
0.6186000 |
0.7017000 |
36.72 |
66.42 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16380252 |
rs2275167 |
C |
T |
. |
PASS |
0.5734000 |
0.5000000 |
0.8016000 |
0.6123000 |
0.5562000 |
0.6136000 |
36.03 |
65.92 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16380337 |
rs41269173 |
G |
A |
. |
PASS |
0.0998000 |
0.0922000 |
0.0010000 |
0.1571000 |
0.0706000 |
0.0847000 |
37.0 |
61.91 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16383448 |
rs10803415 |
A |
C |
. |
PASS |
0.9032000 |
0.9265000 |
0.8244000 |
0.9632000 |
0.8947000 |
0.9010000 |
36.38 |
63.23 |
92 |
1000.00 |
15.77 |
42.39 |
0 |
42.39 |
0/1 |
| chr1 |
16385131 |
rs1832151 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
66.78 |
98 |
1000.00 |
6.12 |
61.22 |
0 |
61.22 |
0/1 |
| chr1 |
16386247 |
rs2095543 |
T |
C |
. |
PASS |
0.9531000 |
0.9323000 |
0.8234000 |
0.9662000 |
0.9018000 |
0.9167000 |
36.0 |
66.14 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16386447 |
rs11576236 |
G |
C |
. |
PASS |
0.9531000 |
0.9337000 |
0.8185000 |
0.9662000 |
0.9018000 |
0.9159000 |
36.35 |
68.78 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16388580 |
rs3978467 |
C |
A |
. |
PASS |
0.1906000 |
0.3833000 |
0.0198000 |
0.2843000 |
0.2945000 |
0.2220000 |
36.03 |
67.81 |
122 |
1000.00 |
9.26 |
30.33 |
0 |
30.33 |
0/1 |
| chr1 |
16388646 |
rs2863456 |
T |
C |
. |
PASS |
0.7163000 |
0.8588000 |
0.8304000 |
0.8738000 |
0.8497000 |
0.8167000 |
36.57 |
68.96 |
123 |
1000.00 |
1.72 |
67.48 |
0 |
67.48 |
0/1 |
| chr1 |
16388709 |
rs28570004 |
G |
T |
. |
PASS |
0.4100000 |
0.4078000 |
0.5575000 |
0.4911000 |
0.4611000 |
0.4657000 |
36.25 |
66.72 |
51 |
1000.00 |
9.07 |
62.75 |
0 |
62.75 |
0/1 |
| chr1 |
16388756 |
rs113174531 |
CACCCAT |
C |
. |
PASS |
0.3306000 |
0.1297000 |
0.0030000 |
0.1948000 |
0.0982000 |
0.1641000 |
36.45 |
68.73 |
14 |
294.77 |
16.88 |
78.57 |
0 |
78.57 |
0/1 |
| chr1 |
16388766 |
rs3978469 |
C |
T |
. |
PASS |
0.5847000 |
0.8271000 |
0.7530000 |
0.8499000 |
0.8170000 |
0.7508000 |
35.67 |
69.22 |
13 |
292.32 |
17.09 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
16464673 |
rs2230597 |
G |
A |
. |
PASS |
0.3396000 |
0.4294000 |
0.1458000 |
0.4215000 |
0.4417000 |
0.3494000 |
36.5 |
70.0 |
101 |
1000.00 |
7.55 |
47.52 |
0 |
47.52 |
0/1 |
| chr1 |
16474839 |
rs35127370 |
AC |
A |
. |
PASS |
0.4675000 |
0.4510000 |
0.0714000 |
0.4026000 |
0.3395000 |
0.3474000 |
35.58 |
70.0 |
58 |
1000.00 |
4.12 |
53.45 |
0 |
53.45 |
0/1 |
| chr1 |
16475123 |
rs6678616 |
C |
T |
. |
PASS |
0.1460000 |
0.3660000 |
0.0308000 |
0.3618000 |
0.2986000 |
0.2264000 |
37.0 |
70.0 |
93 |
1000.00 |
0.55 |
46.24 |
0 |
46.24 |
0/1 |
| chr1 |
16475126 |
rs6678618 |
C |
T |
. |
PASS |
0.1460000 |
0.3660000 |
0.0308000 |
0.3618000 |
0.2996000 |
0.2266000 |
37.0 |
70.0 |
94 |
1000.00 |
4.06 |
45.74 |
0 |
45.74 |
0/1 |
| chr1 |
16528218 |
rs6676143 |
G |
T |
. |
PASS |
0.3775000 |
0.3761000 |
0.7123000 |
0.4742000 |
0.4192000 |
0.4722000 |
35.84 |
70.0 |
52 |
1000.00 |
0.50 |
59.62 |
0 |
59.62 |
0/1 |
| chr1 |
16528843 |
rs1693540 |
A |
G |
. |
PASS |
0.6800000 |
0.8588000 |
0.8661000 |
0.8449000 |
0.8773000 |
0.8139000 |
36.62 |
70.0 |
57 |
1000.00 |
3.29 |
56.14 |
0 |
56.14 |
0/1 |
| chr1 |
16533444 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.67 |
54 |
1000.00 |
3.70 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
16533830 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
53.18 |
33.33 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
16559541 |
rs3738631 |
C |
G |
. |
PASS |
0.5923000 |
0.2075000 |
0.1726000 |
0.3042000 |
0.1391000 |
0.3081000 |
37.0 |
70.0 |
22 |
879.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16562968 |
rs6603850 |
C |
A |
. |
PASS |
0.6566000 |
0.5389000 |
0.8472000 |
0.7018000 |
0.5164000 |
0.6603000 |
37.0 |
68.18 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16567622 |
rs6672616 |
T |
C |
. |
PASS |
0.0998000 |
0.1037000 |
0.1696000 |
0.2058000 |
0.1125000 |
0.1382000 |
36.59 |
69.28 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16577908 |
rs12069239 |
G |
C |
. |
PASS |
0.4312000 |
0.2133000 |
0.1746000 |
0.3340000 |
0.1288000 |
0.2708000 |
37.0 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16583030 |
rs3830890 |
C |
CA |
. |
PASS |
0.0915000 |
0.1888000 |
0.1746000 |
0.3340000 |
0.1288000 |
0.1777000 |
36.38 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16621183 |
rs1007150 |
C |
T |
. |
PASS |
0.4788000 |
0.5548000 |
0.8522000 |
0.7584000 |
0.5225000 |
0.6292000 |
36.17 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16621234 |
rs12353958 |
G |
A |
. |
PASS |
0.0023000 |
0.0173000 |
0.0010000 |
0.0855000 |
0.0123000 |
0.0228000 |
36.08 |
70.0 |
63 |
839.91 |
7.94 |
41.27 |
0 |
41.27 |
0/1 |
| chr1 |
16693725 |
rs142845497 |
T |
TG |
. |
PASS |
0.0862000 |
0.1340000 |
0.1726000 |
0.2247000 |
0.0849000 |
0.1378000 |
37.0 |
70.0 |
19 |
659.27 |
9.94 |
94.74 |
0 |
94.74 |
1/1 |
| chr1 |
16725330 |
rs41307763 |
G |
A |
. |
PASS |
0.0045000 |
0.0245000 |
0.1399000 |
0.0994000 |
0.0389000 |
0.0603000 |
34.75 |
70.0 |
27 |
518.56 |
6.48 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
16731646 |
rs3106498 |
T |
C |
. |
PASS |
0.8608000 |
0.9841000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9611000 |
36.68 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16736132 |
rs4661746 |
T |
C |
. |
PASS |
0.0159000 |
0.1686000 |
0.1726000 |
0.3161000 |
0.1380000 |
0.1528000 |
36.49 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16736546 |
rs10907226 |
C |
T |
. |
PASS |
0.5953000 |
0.5346000 |
0.9097000 |
0.6421000 |
0.3957000 |
0.6206000 |
35.8 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16778265 |
rs279782 |
G |
T |
. |
PASS |
0.2511000 |
0.5346000 |
0.2976000 |
0.5596000 |
0.6646000 |
0.4425000 |
37.0 |
70.0 |
41 |
884.23 |
1.95 |
60.98 |
0 |
60.98 |
0/1 |
| chr1 |
16785564 |
rs11543230 |
C |
T |
. |
PASS |
0.0015000 |
0.0202000 |
0.0010000 |
0.0765000 |
0.0204000 |
0.0228000 |
37.0 |
70.0 |
27 |
303.96 |
6.67 |
37.04 |
0 |
37.04 |
0/1 |
| chr1 |
16802890 |
rs696095 |
G |
A |
. |
PASS |
0.1354000 |
0.5245000 |
0.2966000 |
0.5517000 |
0.6605000 |
0.4079000 |
36.47 |
67.82 |
90 |
1000.00 |
4.44 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
16804745 |
rs696096 |
T |
C |
. |
PASS |
0.2617000 |
0.5274000 |
0.3006000 |
0.5398000 |
0.6493000 |
0.4379000 |
37.0 |
69.19 |
54 |
1000.00 |
6.02 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
16804753 |
rs696097 |
T |
C |
. |
PASS |
0.2617000 |
0.5274000 |
0.3006000 |
0.5408000 |
0.6493000 |
0.4381000 |
36.62 |
69.12 |
54 |
1000.00 |
4.86 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
16812082 |
rs2418644 |
A |
G |
. |
PASS |
0.1339000 |
0.3876000 |
0.0188000 |
0.3012000 |
0.3630000 |
0.2242000 |
37.0 |
68.12 |
46 |
831.56 |
0.36 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
16813066 |
rs2165678 |
C |
T |
. |
PASS |
0.1664000 |
0.3948000 |
0.0268000 |
0.3052000 |
0.3671000 |
0.2370000 |
36.4 |
69.6 |
79 |
1000.00 |
3.73 |
50.63 |
0 |
50.63 |
0/1 |
| chr1 |
16877444 |
rs79270280 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.46 |
113 |
166.28 |
5.04 |
11.50 |
0 |
11.50 |
0/1 |
| chr1 |
16877479 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.31 |
134 |
232.53 |
22.95 |
11.94 |
0 |
11.94 |
0/1 |
| chr1 |
16890283 |
rs156893 |
G |
T |
. |
PASS |
0.9818000 |
0.9769000 |
1.0000000 |
0.9712000 |
0.9918000 |
0.9846000 |
35.55 |
68.82 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16890320 |
rs3900707 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.0 |
55 |
94.38 |
0.00 |
12.73 |
0 |
12.73 |
0/1 |
| chr1 |
16890421 |
rs2990549 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.21 |
69.25 |
289 |
1000.00 |
3.31 |
52.60 |
0 |
52.60 |
0/1 |
| chr1 |
16890428 |
rs3900708 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
69.8 |
320 |
1000.00 |
3.81 |
20.62 |
0 |
20.62 |
0/1 |
| chr1 |
16890441 |
rs3863779 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.66 |
68.66 |
368 |
1000.00 |
7.44 |
19.29 |
0 |
19.29 |
0/1 |
| chr1 |
16890484 |
rs12117084 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
69.13 |
522 |
1000.00 |
1.63 |
19.73 |
0 |
19.73 |
0/1 |
| chr1 |
16890598 |
rs2990550 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.13 |
68.56 |
174 |
1000.00 |
15.56 |
55.75 |
0 |
55.75 |
0/1 |
| chr1 |
16890602 |
rs2990551 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.82 |
169 |
1000.00 |
7.24 |
39.64 |
0 |
39.64 |
0/1 |
| chr1 |
16890607 |
rs200783506 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.1 |
146 |
781.21 |
17.35 |
20.55 |
0 |
20.55 |
0/1 |
| chr1 |
16890639 |
rs1043750 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.8 |
66 |
1000.00 |
8.48 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
16890644 |
rs2992339 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.32 |
62 |
1000.00 |
6.45 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
16890670 |
. |
ATG |
ACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
69.05 |
22 |
787.94 |
0.00 |
95.45 |
0 |
95.45 |
1/1 |
| chr1 |
16891149 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.25 |
19 |
77.42 |
31.58 |
21.05 |
0 |
21.05 |
0/1 |
| chr1 |
16891154 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.2 |
22 |
110.16 |
12.73 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
16891158 |
rs4112523 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.29 |
23 |
478.93 |
2.48 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
16891243 |
rs61771012 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.86 |
61.76 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16891333 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.42 |
66.08 |
248 |
748.38 |
10.87 |
15.32 |
0 |
15.32 |
0/1 |
| chr1 |
16891485 |
rs2289551 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.07 |
16 |
504.15 |
12.50 |
87.50 |
0 |
87.50 |
0/1 |
| chr1 |
16894181 |
rs3983164 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
11 |
59.73 |
48.48 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
16894301 |
rs4098002 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.24 |
63 |
483.85 |
0.00 |
26.98 |
0 |
26.98 |
0/1 |
| chr1 |
16894323 |
rs55870077 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.45 |
106 |
1000.00 |
0.00 |
41.51 |
0 |
41.51 |
0/1 |
| chr1 |
16894376 |
rs849613 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.55 |
47.39 |
272 |
440.48 |
0.37 |
11.76 |
0 |
12.13 |
0/1 |
| chr1 |
16894664 |
rs860282 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
53.81 |
28 |
748.42 |
2.38 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
16895634 |
rs75027498 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
52.66 |
213 |
1000.00 |
8.94 |
63.85 |
0 |
63.85 |
0/1 |
| chr1 |
16899669 |
rs373211172 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.8 |
16 |
128.22 |
20.00 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
16900883 |
rs688635 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
34.33 |
24 |
129.76 |
25.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
16901247 |
rs10752419 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.57 |
40 |
427.77 |
25.00 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
16901259 |
rs10907243 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.11 |
30 |
249.02 |
20.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
16901539 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.4 |
52.6 |
31 |
472.61 |
34.41 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
16901549 |
rs10907244 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.82 |
38 |
563.24 |
33.75 |
44.74 |
0 |
44.74 |
0/1 |
| chr1 |
16901714 |
rs138796798 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.8 |
63.79 |
106 |
1000.00 |
6.12 |
57.55 |
0 |
57.55 |
0/1 |
| chr1 |
16902661 |
rs2985115 |
C |
A |
. |
PASS |
0.6626000 |
0.6427000 |
0.8115000 |
0.6133000 |
0.5879000 |
0.6653000 |
37.0 |
49.6 |
16 |
332.92 |
0.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
16902727 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.94 |
51.0 |
95 |
1000.00 |
8.98 |
35.79 |
0 |
35.79 |
0/1 |
| chr1 |
16902750 |
rs375334074 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.7 |
192 |
225.05 |
16.04 |
10.42 |
0 |
10.42 |
0/1 |
| chr1 |
16902804 |
rs77427788 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.02 |
371 |
601.08 |
7.91 |
11.32 |
0 |
11.32 |
0/1 |
| chr1 |
16902823 |
rs80271292 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.53 |
44.12 |
390 |
895.81 |
3.53 |
13.08 |
0 |
13.08 |
0/1 |
| chr1 |
16902884 |
rs74630591 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.73 |
46.48 |
264 |
998.82 |
7.58 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
16902894 |
rs61772339 |
A |
G |
. |
PASS |
0.7300000 |
0.6455000 |
0.7996000 |
0.6183000 |
0.5849000 |
0.6815000 |
36.36 |
52.56 |
229 |
1000.00 |
4.92 |
65.07 |
0 |
65.07 |
0/1 |
| chr1 |
16903663 |
rs684193 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
67.5 |
12 |
158.01 |
16.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
16903674 |
rs613213 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.8 |
18 |
331.06 |
11.11 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
16903683 |
rs684166 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.75 |
20 |
404.42 |
3.33 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
16903730 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.21 |
79 |
523.39 |
7.06 |
24.05 |
0 |
24.05 |
0/1 |
| chr1 |
16903912 |
rs61772344 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.17 |
56.9 |
77 |
918.94 |
58.04 |
37.66 |
0 |
37.66 |
0/1 |
| chr1 |
16905518 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.4 |
17 |
125.22 |
0.00 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
16905641 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.62 |
21 |
234.33 |
23.81 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
16905718 |
rs3738661 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.91 |
18 |
368.68 |
22.22 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
16905787 |
. |
GAT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
14 |
98.49 |
42.86 |
7.14 |
1 |
35.71 |
0/1 |
| chr1 |
16905787 |
. |
GAT |
GGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.25 |
14 |
98.49 |
42.86 |
28.57 |
1 |
35.71 |
0/1 |
| chr1 |
16905788 |
rs145220846 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.25 |
12 |
98.49 |
50.00 |
33.33 |
1 |
33.33 |
0/1 |
| chr1 |
16905789 |
rs141419018 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.25 |
12 |
98.49 |
50.00 |
33.33 |
1 |
33.33 |
0/1 |
| chr1 |
16905800 |
rs199652869 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
68.67 |
10 |
50.73 |
60.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
16905842 |
rs200194071 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
55.33 |
13 |
155.00 |
25.64 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
16907107 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
68.86 |
34 |
141.43 |
17.65 |
20.59 |
0 |
20.59 |
0/1 |
| chr1 |
16907110 |
rs77700260 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
68.96 |
36 |
837.65 |
5.56 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
16907124 |
rs615115 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
68.77 |
55 |
1000.00 |
1.68 |
70.91 |
0 |
70.91 |
0/1 |
| chr1 |
16907328 |
rs78540200 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
65.28 |
579 |
1000.00 |
0.44 |
72.19 |
0 |
72.19 |
0/1 |
| chr1 |
16907466 |
rs371465077 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.85 |
50.75 |
215 |
1000.00 |
5.12 |
37.21 |
0 |
37.21 |
0/1 |
| chr1 |
16907547 |
rs142893461 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.0 |
35 |
442.82 |
8.57 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
16907766 |
rs115167116 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.73 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16907854 |
rs9729861 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
65.95 |
169 |
1000.00 |
14.17 |
59.76 |
0 |
59.76 |
0/1 |
| chr1 |
16907863 |
rs375442303 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
66.76 |
185 |
104.66 |
19.01 |
9.19 |
0 |
9.19 |
0/1 |
| chr1 |
16907871 |
rs9728933 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.9 |
65.87 |
217 |
1000.00 |
10.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
16908115 |
rs647061 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
69.5 |
35 |
434.96 |
2.86 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
16908181 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.14 |
17 |
208.75 |
16.81 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
16909052 |
rs140548913 |
C |
T |
. |
PASS |
0.8729000 |
0.8141000 |
0.8393000 |
0.7763000 |
0.8047000 |
0.8253000 |
35.91 |
65.18 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
16909057 |
rs202075504 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.0 |
12 |
52.57 |
16.67 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
16909061 |
rs200499873 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.0 |
11 |
55.58 |
6.06 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
16910064 |
rs2023254 |
A |
G |
. |
PASS |
0.4773000 |
0.4986000 |
0.5823000 |
0.4433000 |
0.4519000 |
0.4896000 |
36.57 |
66.96 |
91 |
851.19 |
28.02 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
16912013 |
. |
CAG |
CCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.5 |
12 |
56.72 |
33.33 |
16.67 |
1 |
33.33 |
0/1 |
| chr1 |
16912013 |
. |
CAG |
CCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.5 |
12 |
56.72 |
33.33 |
16.67 |
1 |
33.33 |
0/1 |
| chr1 |
16912015 |
rs58689366 |
G |
A |
. |
PASS |
0.0197000 |
0.1758000 |
0.1577000 |
0.1362000 |
0.2239000 |
0.1324000 |
37.0 |
69.33 |
12 |
56.72 |
50.00 |
25.00 |
1 |
25.00 |
0/1 |
| chr1 |
16912299 |
rs61773587 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.22 |
29 |
256.18 |
0.00 |
31.03 |
0 |
31.03 |
0/1 |
| chr1 |
16912330 |
rs4336845 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.15 |
69.23 |
15 |
441.38 |
0.00 |
86.67 |
0 |
86.67 |
0/1 |
| chr1 |
16913451 |
rs201873677 |
AAAGAAT |
A |
. |
PASS |
0.0091000 |
0.0029000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0031949 |
37.0 |
49.33 |
20 |
67.86 |
30.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
16913469 |
. |
T |
C |
. |
PASS |
0.0083000 |
0.0014000 |
0.0030000 |
0.0000000 |
0.0000000 |
0.0029952 |
37.0 |
49.33 |
26 |
139.89 |
38.46 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
16914117 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.9 |
122 |
477.50 |
6.17 |
17.21 |
0 |
17.21 |
0/1 |
| chr1 |
16914160 |
rs2023215 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
66.33 |
234 |
1000.00 |
8.79 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
16914168 |
rs2147033 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
66.08 |
233 |
1000.00 |
2.40 |
60.09 |
0 |
60.09 |
0/1 |
| chr1 |
16914196 |
rs61773595 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
68.33 |
340 |
1000.00 |
0.96 |
18.82 |
0 |
18.82 |
0/1 |
| chr1 |
16914252 |
rs1020241 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.26 |
63.46 |
397 |
1000.00 |
5.11 |
44.58 |
0 |
45.09 |
0/1 |
| chr1 |
16914306 |
rs1967910 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
64.04 |
216 |
1000.00 |
5.22 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
16914339 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.1 |
131 |
446.27 |
17.23 |
16.03 |
0 |
16.03 |
0/1 |
| chr1 |
16914393 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.4 |
59.33 |
53 |
406.40 |
9.56 |
28.30 |
0 |
28.30 |
0/1 |
| chr1 |
16914396 |
rs2023276 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.88 |
50 |
1000.00 |
2.25 |
64.00 |
0 |
64.00 |
0/1 |
| chr1 |
16914415 |
rs4233549 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
62.3 |
34 |
688.59 |
4.12 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
16915513 |
rs368775000 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.33 |
12 |
52.57 |
100.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
16915609 |
rs201503702 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
33.75 |
13 |
95.48 |
7.69 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
16915611 |
rs199620792 |
T |
C |
. |
PASS |
0.0408000 |
0.2118000 |
0.3641000 |
0.1471000 |
0.1186000 |
0.1661000 |
34.6 |
55.6 |
12 |
128.26 |
3.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
16916358 |
rs3981774 |
G |
C |
. |
PASS |
0.5522000 |
0.2954000 |
0.3542000 |
0.2734000 |
0.3108000 |
0.3736000 |
37.0 |
60.21 |
93 |
1000.00 |
28.29 |
41.94 |
0 |
41.94 |
0/1 |
| chr1 |
16916363 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.92 |
108 |
143.71 |
46.30 |
11.11 |
0 |
11.11 |
0/1 |
| chr1 |
16916368 |
rs200854427 |
T |
C |
. |
PASS |
0.0083000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0000000 |
0.0023962 |
36.59 |
61.76 |
112 |
829.76 |
43.78 |
25.89 |
0 |
25.89 |
0/1 |
| chr1 |
16916466 |
rs112602821 |
A |
G |
. |
PASS |
0.1415000 |
0.2450000 |
0.2738000 |
0.1650000 |
0.1718000 |
0.1931000 |
37.0 |
58.25 |
168 |
130.22 |
36.90 |
9.52 |
0 |
9.52 |
0/1 |
| chr1 |
16916515 |
rs61773622 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.23 |
66 |
311.89 |
2.33 |
19.70 |
0 |
19.70 |
0/1 |
| chr1 |
16916569 |
rs1855754 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.0 |
26 |
56.36 |
0.00 |
15.38 |
0 |
15.38 |
0/1 |
| chr1 |
16916603 |
rs11583443 |
C |
A |
. |
PASS |
0.9198000 |
0.7089000 |
0.8651000 |
0.6233000 |
0.6759000 |
0.7724000 |
35.5 |
63.75 |
10 |
255.43 |
0.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
16918424 |
rs9730077 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.73 |
59.69 |
432 |
530.77 |
10.09 |
10.42 |
0 |
10.42 |
0/1 |
| chr1 |
16918454 |
rs9730079 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
55.87 |
385 |
384.00 |
6.25 |
9.87 |
0 |
9.87 |
0/1 |
| chr1 |
16918457 |
rs9730080 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.11 |
380 |
406.91 |
4.74 |
10.00 |
0 |
10.00 |
0/1 |
| chr1 |
16918465 |
rs3897296 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
56.72 |
370 |
1000.00 |
29.37 |
16.22 |
0 |
16.22 |
0/1 |
| chr1 |
16918502 |
rs3925698 |
A |
G |
. |
PASS |
0.2579000 |
0.5360000 |
0.6101000 |
0.6024000 |
0.5470000 |
0.4930000 |
36.63 |
64.52 |
284 |
1000.00 |
0.57 |
68.31 |
0 |
68.31 |
0/1 |
| chr1 |
16918611 |
rs4141869 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
56.24 |
61 |
1000.00 |
3.97 |
54.10 |
0 |
54.10 |
0/1 |
| chr1 |
16931073 |
rs4661853 |
G |
A |
. |
PASS |
0.2005000 |
0.3127000 |
0.4286000 |
0.3161000 |
0.3630000 |
0.3169000 |
37.0 |
70.0 |
12 |
98.49 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
16931355 |
rs381429 |
T |
A |
. |
PASS |
0.3949000 |
0.4352000 |
0.3968000 |
0.4046000 |
0.3885000 |
0.4016000 |
36.57 |
69.25 |
125 |
744.70 |
3.77 |
22.40 |
0 |
22.40 |
0/1 |
| chr1 |
16934905 |
rs849710 |
A |
G |
. |
PASS |
0.9796000 |
0.8775000 |
0.9464000 |
0.8052000 |
0.8538000 |
0.8992000 |
37.0 |
69.68 |
22 |
694.95 |
1.44 |
86.36 |
0 |
86.36 |
0/1 |
| chr1 |
16945367 |
rs71270819 |
AGAG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.62 |
70.0 |
45 |
375.30 |
16.11 |
35.56 |
0 |
35.56 |
0/1 |
| chr1 |
16945409 |
rs13566 |
T |
A |
. |
PASS |
0.2254000 |
0.3473000 |
0.2113000 |
0.3767000 |
0.4110000 |
0.3061000 |
35.86 |
70.0 |
91 |
542.65 |
0.73 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
16945452 |
rs11260834 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
69.68 |
190 |
302.59 |
3.06 |
11.58 |
0 |
11.58 |
0/1 |
| chr1 |
16945504 |
rs11378 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.84 |
67.82 |
366 |
1000.00 |
10.60 |
21.04 |
0 |
21.04 |
0/1 |
| chr1 |
16945673 |
rs55654854 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.72 |
90 |
448.49 |
0.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
16945738 |
rs150540867 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.0 |
17 |
375.84 |
0.00 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
16946535 |
rs437905 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
68.96 |
110 |
1000.00 |
6.56 |
46.36 |
0 |
46.36 |
0/1 |
| chr1 |
16946562 |
rs1762938 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.25 |
56 |
296.06 |
1.19 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
16948472 |
. |
TCC |
TCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
68.94 |
356 |
1000.00 |
0.71 |
21.91 |
0 |
91.01 |
0/1 |
| chr1 |
16948472 |
. |
TCC |
TTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
68.94 |
356 |
1000.00 |
0.21 |
69.10 |
0 |
91.01 |
0/1 |
| chr1 |
16950251 |
rs55674375 |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
21 |
187.15 |
19.05 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
16950346 |
rs9663015 |
A |
C |
. |
PASS |
0.1210000 |
0.1888000 |
0.0843000 |
0.1372000 |
0.2873000 |
0.1587000 |
36.71 |
67.86 |
198 |
1000.00 |
3.68 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
16950708 |
rs1628058 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
69.95 |
76 |
1000.00 |
0.71 |
53.95 |
0 |
53.95 |
0/1 |
| chr1 |
16950783 |
rs2246249 |
T |
A |
. |
PASS |
0.1225000 |
0.2378000 |
0.0129000 |
0.1918000 |
0.2423000 |
0.1538000 |
36.59 |
69.95 |
227 |
1000.00 |
9.80 |
25.99 |
0 |
25.99 |
0/1 |
| chr1 |
16950880 |
rs1629127 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.89 |
70.0 |
212 |
1000.00 |
1.06 |
53.77 |
0 |
53.77 |
0/1 |
| chr1 |
16951024 |
rs1624137 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.52 |
49 |
1000.00 |
2.60 |
67.35 |
0 |
67.35 |
0/1 |
| chr1 |
16952260 |
rs1762943 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
223.80 |
14.29 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
16952703 |
rs1762944 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
17 |
125.21 |
28.24 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
16952896 |
rs1762945 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.23 |
278 |
425.67 |
3.20 |
11.15 |
0 |
11.15 |
0/1 |
| chr1 |
16952952 |
rs1762946 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.04 |
69.16 |
234 |
283.44 |
0.03 |
10.68 |
0 |
10.68 |
0/1 |
| chr1 |
16952993 |
rs942268 |
C |
G |
. |
PASS |
0.8699000 |
0.8429000 |
0.9643000 |
0.8270000 |
0.7566000 |
0.8544000 |
36.6 |
67.75 |
184 |
1000.00 |
3.16 |
65.76 |
0 |
65.76 |
0/1 |
| chr1 |
16953672 |
rs3738597 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
65.95 |
541 |
1000.00 |
1.22 |
12.20 |
0 |
12.20 |
0/1 |
| chr1 |
16955128 |
rs1762949 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.76 |
68.71 |
153 |
1000.00 |
7.84 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
16955217 |
rs4661868 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.12 |
20 |
241.49 |
5.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
16957446 |
rs698883 |
T |
G |
. |
PASS |
0.9743000 |
0.8761000 |
0.9514000 |
0.7932000 |
0.8507000 |
0.8956000 |
37.0 |
69.96 |
52 |
1000.00 |
0.32 |
92.31 |
0 |
92.31 |
0/1 |
| chr1 |
16958062 |
. |
CCA |
CCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.26 |
69.21 |
241 |
1000.00 |
1.63 |
22.41 |
0 |
46.89 |
0/1 |
| chr1 |
16958062 |
. |
CCA |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.26 |
69.21 |
241 |
1000.00 |
6.40 |
24.48 |
0 |
46.89 |
0/1 |
| chr1 |
16958141 |
rs11589875 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.23 |
138 |
95.18 |
15.27 |
9.42 |
0 |
9.42 |
0/1 |
| chr1 |
16958155 |
rs9658906 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.23 |
116 |
161.40 |
14.32 |
11.21 |
0 |
11.21 |
0/1 |
| chr1 |
16959551 |
rs849696 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
70.0 |
41 |
571.97 |
6.78 |
43.90 |
0 |
43.90 |
0/1 |
| chr1 |
16959602 |
rs1807293 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
70.0 |
132 |
1000.00 |
6.36 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
16959612 |
rs9329443 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.83 |
69.93 |
144 |
1000.00 |
5.93 |
28.47 |
0 |
28.47 |
0/1 |
| chr1 |
16959732 |
rs112000683 |
T |
TGGGCCTGCAGCA |
. |
PASS |
0.4644000 |
0.3818000 |
0.3363000 |
0.3439000 |
0.3814000 |
0.3868000 |
36.33 |
63.72 |
74 |
502.84 |
5.83 |
25.68 |
0 |
25.68 |
0/1 |
| chr1 |
16959814 |
rs1759187 |
C |
T |
. |
PASS |
0.3638000 |
0.3646000 |
0.0972000 |
0.3221000 |
0.3088000 |
0.2911000 |
37.0 |
70.0 |
14 |
50.70 |
28.57 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
16969246 |
rs11260857 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.21 |
68.89 |
168 |
1000.00 |
3.43 |
36.31 |
0 |
36.31 |
0/1 |
| chr1 |
16969381 |
rs9727604 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.73 |
68.06 |
102 |
1000.00 |
3.39 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
16972134 |
rs4661404 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
55.82 |
217 |
656.77 |
11.40 |
15.21 |
0 |
15.21 |
0/1 |
| chr1 |
16972920 |
rs4661882 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.84 |
69.52 |
444 |
1000.00 |
4.95 |
34.68 |
0 |
34.68 |
0/1 |
| chr1 |
16973388 |
rs76880030 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.29 |
236 |
259.69 |
22.32 |
10.17 |
0 |
10.17 |
0/1 |
| chr1 |
16973519 |
rs2501762 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
59.86 |
516 |
1000.00 |
6.79 |
14.73 |
0 |
14.73 |
0/1 |
| chr1 |
16973606 |
rs76859932 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.37 |
64.36 |
644 |
393.39 |
0.48 |
9.16 |
0 |
9.16 |
0/1 |
| chr1 |
16973919 |
rs141898836 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.55 |
52.85 |
337 |
1000.00 |
1.34 |
23.74 |
0 |
23.74 |
0/1 |
| chr1 |
16973996 |
rs200256873 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.55 |
51.53 |
475 |
727.70 |
38.57 |
11.16 |
0 |
11.16 |
0/1 |
| chr1 |
16974010 |
rs201140718 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
51.43 |
517 |
304.71 |
44.45 |
8.90 |
0 |
8.90 |
0/1 |
| chr1 |
16974256 |
. |
G |
C |
. |
PASS |
0.5159000 |
0.5115000 |
0.6736000 |
0.5000000 |
0.4980000 |
0.5403000 |
36.86 |
47.64 |
322 |
1000.00 |
38.87 |
27.02 |
0 |
27.02 |
0/1 |
| chr1 |
16974511 |
rs58679574 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.19 |
68.36 |
508 |
854.89 |
9.24 |
11.61 |
0 |
11.61 |
0/1 |
| chr1 |
16974592 |
rs201212576 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
66.44 |
601 |
1000.00 |
10.26 |
13.64 |
0 |
13.64 |
0/1 |
| chr1 |
16974637 |
rs16854791 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.8 |
64.6 |
832 |
1000.00 |
6.43 |
21.39 |
0 |
21.39 |
0/1 |
| chr1 |
16974662 |
rs28460410 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.36 |
64.33 |
757 |
1000.00 |
6.78 |
17.44 |
0 |
17.44 |
0/1 |
| chr1 |
16974869 |
rs4570422 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.91 |
68.69 |
474 |
1000.00 |
5.16 |
27.43 |
0 |
27.43 |
0/1 |
| chr1 |
16975045 |
rs55763726 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.86 |
57.81 |
635 |
1000.00 |
36.48 |
13.86 |
0 |
13.86 |
0/1 |
| chr1 |
16975202 |
rs28602904 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.98 |
61.14 |
737 |
1000.00 |
6.85 |
32.02 |
0 |
32.02 |
0/1 |
| chr1 |
16975230 |
rs2761535 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.58 |
60.42 |
631 |
1000.00 |
1.74 |
89.22 |
0 |
89.54 |
0/1 |
| chr1 |
16975495 |
rs199672680 |
T |
C |
. |
PASS |
0.4584000 |
0.6268000 |
0.7004000 |
0.5159000 |
0.5552000 |
0.5609000 |
36.59 |
46.2 |
115 |
1000.00 |
15.42 |
51.30 |
0 |
51.30 |
0/1 |
| chr1 |
16975689 |
rs201913540 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.71 |
283 |
531.78 |
24.34 |
12.01 |
0 |
12.01 |
0/1 |
| chr1 |
16975831 |
rs61772254 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
40.52 |
367 |
831.83 |
0.08 |
13.08 |
0 |
13.08 |
0/1 |
| chr1 |
16976032 |
rs2483047 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
68.27 |
429 |
1000.00 |
2.53 |
25.87 |
0 |
25.87 |
0/1 |
| chr1 |
16976193 |
rs61772256 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.11 |
571 |
1000.00 |
14.43 |
14.36 |
0 |
14.36 |
0/1 |
| chr1 |
16976436 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.07 |
314 |
187.85 |
46.18 |
8.92 |
0 |
8.92 |
0/1 |
| chr1 |
16976451 |
rs201492135 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
58.05 |
338 |
722.31 |
35.82 |
12.72 |
0 |
12.72 |
0/1 |
| chr1 |
16976539 |
rs199931165 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
48.55 |
550 |
1000.00 |
34.13 |
19.82 |
0 |
19.82 |
0/1 |
| chr1 |
16976569 |
rs78288272 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
52.72 |
803 |
522.06 |
15.99 |
8.97 |
0 |
8.97 |
0/1 |
| chr1 |
16976585 |
rs1135350 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
53.97 |
910 |
1000.00 |
10.92 |
25.71 |
0 |
25.71 |
0/1 |
| chr1 |
16976620 |
rs55885953 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.66 |
63.26 |
1056 |
1000.00 |
2.35 |
40.15 |
0 |
40.15 |
0/1 |
| chr1 |
16976641 |
rs1057417 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.19 |
58.03 |
1101 |
1000.00 |
1.22 |
14.62 |
0 |
14.71 |
0/1 |
| chr1 |
16976649 |
rs1057333 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
58.83 |
1147 |
1000.00 |
3.46 |
16.22 |
0 |
16.22 |
0/1 |
| chr1 |
16976679 |
rs1065528 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
61.7 |
933 |
1000.00 |
0.91 |
83.39 |
0 |
83.39 |
0/1 |
| chr1 |
16976681 |
rs3175284 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
59.3 |
957 |
1000.00 |
6.54 |
15.46 |
0 |
15.46 |
0/1 |
| chr1 |
16976825 |
rs2761525 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
51.55 |
95 |
124.92 |
12.44 |
11.58 |
0 |
11.58 |
0/1 |
| chr1 |
16983098 |
rs200475354 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.11 |
21 |
276.10 |
12.70 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
16983551 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.0 |
27 |
136.88 |
3.70 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
16983663 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.33 |
13 |
179.02 |
7.69 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
16983706 |
rs199579458 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.15 |
42 |
1000.00 |
0.24 |
95.24 |
0 |
95.24 |
1/1 |
| chr1 |
16983796 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.0 |
19 |
77.42 |
15.79 |
21.05 |
0 |
21.05 |
0/1 |
| chr1 |
16999610 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
44.0 |
35 |
180.18 |
2.86 |
22.86 |
0 |
22.86 |
0/1 |
| chr1 |
16999661 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.14 |
29 |
168.49 |
10.84 |
24.14 |
0 |
24.14 |
0/1 |
| chr1 |
16999764 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
50.0 |
52 |
133.18 |
0.00 |
15.38 |
0 |
15.38 |
0/1 |
| chr1 |
16999791 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
58.67 |
49 |
179.81 |
13.15 |
18.37 |
0 |
18.37 |
0/1 |
| chr1 |
16999802 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.5 |
48 |
157.22 |
0.00 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
16999834 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.25 |
33 |
202.36 |
3.03 |
24.24 |
0 |
24.24 |
0/1 |
| chr1 |
17007531 |
rs150982605 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.98 |
56.9 |
93 |
1000.00 |
2.77 |
63.44 |
0 |
63.44 |
0/1 |
| chr1 |
17007661 |
rs201569183 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.22 |
25 |
264.06 |
67.56 |
36.00 |
0 |
36.00 |
0/1 |
| chr1 |
17007763 |
rs5772705,rs370766355 |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
38.79 |
24 |
464.51 |
9.52 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
17007855 |
rs1236822 |
C |
T |
. |
PASS |
1.0000000 |
0.9798000 |
1.0000000 |
0.9404000 |
0.9959000 |
0.9844000 |
37.0 |
55.3 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17008302 |
rs2786824 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.12 |
67 |
805.97 |
8.48 |
37.31 |
0 |
37.31 |
0/1 |
| chr1 |
17012241 |
rs2761492 |
G |
T |
. |
PASS |
0.7579000 |
0.8934000 |
0.9950000 |
0.8549000 |
0.9162000 |
0.8748000 |
35.94 |
69.94 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17013750 |
rs1765547 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
17 |
125.21 |
11.76 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
17013810 |
rs58938355 |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.24 |
69.82 |
47 |
513.58 |
11.26 |
36.17 |
1 |
36.17 |
0/1 |
| chr1 |
17013810 |
. |
AGT |
AC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
51 |
494.39 |
19.12 |
31.37 |
1 |
31.37 |
0/1 |
| chr1 |
17013812 |
rs55887839 |
T |
C |
. |
PASS |
0.0008000 |
0.0231000 |
0.0000000 |
0.0159000 |
0.0123000 |
0.0089856 |
37.0 |
69.81 |
47 |
494.39 |
18.62 |
34.04 |
1 |
34.04 |
0/1 |
| chr1 |
17013839 |
rs1765548 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
70.0 |
69 |
537.32 |
0.92 |
27.54 |
0 |
27.54 |
0/1 |
| chr1 |
17013916 |
rs59725107 |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.12 |
68.98 |
96 |
1000.00 |
3.75 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
17013945 |
rs545745 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
69.79 |
84 |
872.25 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
17013974 |
rs545014 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.75 |
62 |
783.40 |
4.57 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
17017675 |
rs2743471 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
69.66 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17022952 |
rs557690 |
C |
A |
. |
PASS |
0.9909000 |
0.9510000 |
0.9950000 |
0.9165000 |
0.9479000 |
0.9629000 |
35.83 |
69.69 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17023110 |
rs11260887 |
G |
A |
. |
PASS |
0.1233000 |
0.3703000 |
0.4792000 |
0.3429000 |
0.3824000 |
0.3239000 |
36.66 |
68.51 |
226 |
1000.00 |
5.71 |
46.90 |
0 |
46.90 |
0/1 |
| chr1 |
17023126 |
rs2610633 |
C |
G |
. |
PASS |
0.1475000 |
0.2853000 |
0.0268000 |
0.2097000 |
0.2924000 |
0.1831000 |
36.91 |
69.19 |
271 |
1000.00 |
4.19 |
51.29 |
0 |
51.29 |
0/1 |
| chr1 |
17023143 |
rs559507 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.23 |
68.52 |
281 |
1000.00 |
4.59 |
50.18 |
0 |
50.18 |
0/1 |
| chr1 |
17023182 |
rs614461 |
C |
G |
. |
PASS |
0.4728000 |
0.4553000 |
0.5357000 |
0.4672000 |
0.4775000 |
0.4828000 |
36.67 |
68.4 |
279 |
1000.00 |
3.10 |
52.33 |
0 |
52.33 |
0/1 |
| chr1 |
17023376 |
rs613579 |
C |
T |
. |
PASS |
0.2474000 |
0.4150000 |
0.4970000 |
0.4264000 |
0.4427000 |
0.3950000 |
36.82 |
69.22 |
127 |
1000.00 |
1.20 |
53.54 |
0 |
53.54 |
0/1 |
| chr1 |
17023403 |
rs10907267 |
G |
A |
. |
PASS |
0.1225000 |
0.3573000 |
0.4563000 |
0.3320000 |
0.3793000 |
0.3145000 |
36.27 |
69.23 |
145 |
1000.00 |
5.94 |
45.52 |
0 |
45.52 |
0/1 |
| chr1 |
17023483 |
rs563062 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
69.25 |
51 |
792.49 |
4.41 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
17023509 |
rs563142 |
T |
C |
. |
PASS |
0.1679000 |
0.3689000 |
0.4782000 |
0.3638000 |
0.3855000 |
0.3401000 |
37.0 |
69.16 |
40 |
640.78 |
23.68 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
17023511 |
rs563144 |
C |
A |
. |
PASS |
0.5787000 |
0.7911000 |
0.8284000 |
0.7346000 |
0.7464000 |
0.7224000 |
36.67 |
69.5 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17025786 |
rs679703 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.23 |
69.0 |
13 |
467.35 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17025828 |
rs2610624 |
G |
C |
. |
PASS |
0.1989000 |
0.4452000 |
0.4355000 |
0.4026000 |
0.4468000 |
0.3700000 |
37.0 |
67.29 |
25 |
472.92 |
6.29 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
17025852 |
rs537296 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
68.61 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17025992 |
rs12026928 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.12 |
69.61 |
225 |
1000.00 |
0.65 |
36.44 |
0 |
36.44 |
0/1 |
| chr1 |
17026043 |
rs60794777 |
G |
GGCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
69.62 |
137 |
1000.00 |
7.14 |
39.42 |
0 |
39.42 |
0/1 |
| chr1 |
17026087 |
rs678369 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.71 |
69.05 |
56 |
628.12 |
11.90 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
17026232 |
rs677827 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.32 |
69.99 |
129 |
1000.00 |
2.31 |
55.04 |
0 |
55.04 |
0/1 |
| chr1 |
17026254 |
rs77347183 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
69.91 |
161 |
1000.00 |
1.53 |
55.90 |
0 |
55.90 |
0/1 |
| chr1 |
17026551 |
rs665763 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
68.26 |
60 |
898.57 |
8.89 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
17029257 |
rs12125112 |
T |
C |
. |
PASS |
0.1490000 |
0.3372000 |
0.1012000 |
0.2326000 |
0.3701000 |
0.2254000 |
36.56 |
67.09 |
83 |
1000.00 |
1.23 |
98.80 |
0 |
98.80 |
1/1 |
| chr1 |
17029462 |
rs11260891 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
69.02 |
140 |
1000.00 |
2.86 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
17029513 |
rs523936 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
69.0 |
73 |
1000.00 |
8.14 |
45.21 |
0 |
45.21 |
0/1 |
| chr1 |
17030325 |
rs601893 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
69.38 |
20 |
438.34 |
0.00 |
65.00 |
0 |
65.00 |
0/1 |
| chr1 |
17030336 |
rs4661915 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.47 |
24 |
521.84 |
10.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
17033758 |
rs1736691 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.28 |
66.88 |
85 |
1000.00 |
7.06 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
17033805 |
rs59259153 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.68 |
66.38 |
148 |
1000.00 |
14.88 |
49.32 |
0 |
49.32 |
0/1 |
| chr1 |
17033854 |
rs2476568 |
C |
T |
. |
PASS |
0.4773000 |
0.5086000 |
0.5258000 |
0.5268000 |
0.5245000 |
0.5106000 |
36.47 |
66.72 |
133 |
1000.00 |
9.58 |
51.13 |
0 |
51.13 |
0/1 |
| chr1 |
17034041 |
rs2743505 |
T |
C |
. |
PASS |
0.6445000 |
0.7795000 |
0.7282000 |
0.7982000 |
0.7802000 |
0.7374000 |
36.76 |
68.77 |
148 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17034125 |
rs141324796,rs79472512 |
C |
CAGCT |
. |
PASS |
0.1188000 |
0.3444000 |
0.4177000 |
0.3101000 |
0.3793000 |
0.2995000 |
36.58 |
68.44 |
147 |
1000.00 |
2.13 |
46.94 |
0 |
46.94 |
0/1 |
| chr1 |
17034250 |
rs61773400 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
69.0 |
21 |
825.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17034455 |
rs140689885,rs58726851 |
CGCGCGCGT |
C |
. |
PASS |
0.0446000 |
0.2277000 |
0.3135000 |
0.2028000 |
0.2812000 |
0.2021000 |
35.06 |
69.25 |
185 |
1000.00 |
6.67 |
34.59 |
0 |
34.59 |
0/1 |
| chr1 |
17034728 |
rs638298 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
69.29 |
13 |
204.63 |
0.00 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
17046361 |
rs3856291 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.82 |
69.27 |
20 |
338.64 |
8.18 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
17046456 |
rs3856292 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.1 |
69.1 |
144 |
1000.00 |
3.44 |
46.53 |
0 |
46.53 |
0/1 |
| chr1 |
17046595 |
rs3856293 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.26 |
68.77 |
189 |
1000.00 |
6.31 |
51.32 |
0 |
51.32 |
0/1 |
| chr1 |
17046613 |
rs3856294 |
C |
T |
. |
PASS |
0.0325000 |
0.0072000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0095847 |
36.31 |
68.75 |
168 |
1000.00 |
1.60 |
51.79 |
0 |
51.79 |
0/1 |
| chr1 |
17046698 |
rs3982089 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.3 |
67 |
1000.00 |
6.27 |
44.78 |
0 |
44.78 |
0/1 |
| chr1 |
17060527 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
55 |
52.63 |
80.00 |
10.91 |
0 |
10.91 |
0/1 |
| chr1 |
17060541 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
46 |
121.46 |
82.61 |
15.22 |
0 |
15.22 |
0/1 |
| chr1 |
17060569 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
69.89 |
38 |
193.06 |
39.77 |
23.68 |
0 |
23.68 |
0/1 |
| chr1 |
17060620 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.22 |
46 |
205.01 |
10.63 |
19.57 |
0 |
19.57 |
0/1 |
| chr1 |
17060646 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.38 |
47 |
156.08 |
14.36 |
17.02 |
0 |
17.02 |
0/1 |
| chr1 |
17060648 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.83 |
48 |
69.52 |
25.00 |
12.50 |
0 |
12.50 |
0/1 |
| chr1 |
17060652 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.57 |
42 |
425.90 |
4.76 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
17060661 |
. |
CCG |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.85 |
37 |
71.03 |
11.89 |
13.51 |
0 |
54.05 |
0/1 |
| chr1 |
17060661 |
. |
CCG |
CCT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.85 |
37 |
71.03 |
1.44 |
40.54 |
0 |
54.05 |
0/1 |
| chr1 |
17060714 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
51 |
269.35 |
31.73 |
21.57 |
0 |
21.57 |
0/1 |
| chr1 |
17060716 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
53 |
267.48 |
32.25 |
20.75 |
0 |
20.75 |
0/1 |
| chr1 |
17060733 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
70.0 |
55 |
412.38 |
33.94 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
17060762 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
70.0 |
61 |
816.17 |
40.13 |
40.98 |
0 |
40.98 |
0/1 |
| chr1 |
17060782 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.96 |
59 |
871.82 |
40.42 |
44.07 |
0 |
44.07 |
0/1 |
| chr1 |
17060871 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.94 |
103 |
321.71 |
16.26 |
15.53 |
0 |
15.53 |
0/1 |
| chr1 |
17060950 |
. |
ACA |
ATC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
25 |
138.76 |
80.00 |
24.00 |
0 |
24.00 |
0/1 |
| chr1 |
17076662 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
48.86 |
25 |
172.67 |
2.29 |
28.00 |
0 |
28.00 |
0/1 |
| chr1 |
17076752 |
rs200840690 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
51.06 |
21 |
598.26 |
1.12 |
80.95 |
0 |
80.95 |
0/1 |
| chr1 |
17077100 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.68 |
149 |
308.55 |
4.38 |
12.75 |
0 |
12.75 |
0/1 |
| chr1 |
17077171 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
55.5 |
110 |
113.68 |
18.79 |
10.91 |
0 |
10.91 |
0/1 |
| chr1 |
17077196 |
rs373381630 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
49.7 |
86 |
933.62 |
2.95 |
34.88 |
0 |
34.88 |
0/1 |
| chr1 |
17077242 |
rs200157489 |
G |
C |
. |
PASS |
0.3752000 |
0.3818000 |
0.2659000 |
0.3678000 |
0.4172000 |
0.3608000 |
36.58 |
47.12 |
85 |
1000.00 |
0.66 |
67.06 |
0 |
67.06 |
0/1 |
| chr1 |
17077359 |
rs200904662 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.57 |
30 |
169.62 |
9.52 |
23.33 |
0 |
23.33 |
0/1 |
| chr1 |
17077407 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.33 |
22 |
147.78 |
15.15 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
17077428 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.87 |
17 |
542.92 |
2.35 |
88.24 |
0 |
88.24 |
0/1 |
| chr1 |
17083577 |
rs2610655 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.25 |
28 |
217.42 |
0.00 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
17083597 |
rs186155999 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
58.05 |
42 |
664.51 |
0.00 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
17083652 |
rs113710576 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.71 |
58.36 |
139 |
682.71 |
12.33 |
20.14 |
0 |
20.14 |
0/1 |
| chr1 |
17083671 |
rs1057420 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
62.73 |
179 |
791.04 |
6.47 |
18.44 |
0 |
18.44 |
0/1 |
| chr1 |
17083685 |
rs3197973 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
63.25 |
193 |
874.20 |
10.22 |
18.65 |
0 |
18.65 |
0/1 |
| chr1 |
17083776 |
rs56318124 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
48.57 |
169 |
307.87 |
26.66 |
12.43 |
0 |
12.43 |
0/1 |
| chr1 |
17083778 |
rs28455793 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
57.08 |
168 |
1000.00 |
46.98 |
36.31 |
0 |
36.31 |
0/1 |
| chr1 |
17083806 |
. |
GTG |
GCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
49.38 |
148 |
283.00 |
46.85 |
12.16 |
1 |
31.76 |
0/1 |
| chr1 |
17083807 |
rs9286084 |
T |
C |
. |
PASS |
0.5545000 |
0.7435000 |
0.8819000 |
0.6789000 |
0.6472000 |
0.6897000 |
36.72 |
49.44 |
135 |
1000.00 |
26.94 |
31.85 |
1 |
31.85 |
0/1 |
| chr1 |
17083816 |
rs11260920 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.75 |
148 |
357.48 |
38.11 |
13.51 |
0 |
13.51 |
0/1 |
| chr1 |
17083872 |
rs61635893 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
51.05 |
161 |
1000.00 |
4.07 |
36.02 |
0 |
36.02 |
0/1 |
| chr1 |
17083888 |
rs75141545 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
51.59 |
153 |
1000.00 |
11.54 |
26.80 |
0 |
26.80 |
0/1 |
| chr1 |
17084006 |
rs2446544 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.35 |
54.38 |
229 |
1000.00 |
28.41 |
24.02 |
0 |
24.02 |
0/1 |
| chr1 |
17084021 |
rs2446543 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
55.33 |
278 |
1000.00 |
9.58 |
20.86 |
0 |
20.86 |
0/1 |
| chr1 |
17084670 |
rs199536872 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
54.43 |
80 |
675.45 |
3.04 |
28.75 |
0 |
28.75 |
0/1 |
| chr1 |
17084815 |
rs11260922 |
G |
A |
. |
PASS |
0.5575000 |
0.6037000 |
0.5575000 |
0.6272000 |
0.6278000 |
0.5917000 |
36.61 |
62.82 |
65 |
1000.00 |
5.65 |
93.85 |
0 |
93.85 |
1/1 |
| chr1 |
17084968 |
rs2761533 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
65.81 |
662 |
1000.00 |
3.08 |
61.33 |
0 |
61.33 |
0/1 |
| chr1 |
17085165 |
rs2490828 |
G |
C |
. |
PASS |
0.9879000 |
0.9323000 |
1.0000000 |
0.8966000 |
0.9826000 |
0.9633000 |
36.65 |
52.47 |
103 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17085255 |
rs2281029 |
A |
G |
. |
PASS |
0.4455000 |
0.3876000 |
0.4683000 |
0.3509000 |
0.3722000 |
0.4087000 |
34.6 |
48.67 |
146 |
118.62 |
42.56 |
10.27 |
0 |
10.27 |
0/1 |
| chr1 |
17085267 |
rs2077142 |
A |
G |
. |
PASS |
0.7095000 |
0.5807000 |
0.9276000 |
0.5547000 |
0.6186000 |
0.6867000 |
36.08 |
50.46 |
147 |
56.08 |
47.72 |
8.84 |
0 |
8.84 |
0/1 |
| chr1 |
17085412 |
rs872964 |
C |
T |
. |
PASS |
0.4811000 |
0.4654000 |
0.4554000 |
0.4175000 |
0.4755000 |
0.4599000 |
36.6 |
60.21 |
509 |
1000.00 |
10.17 |
35.76 |
0 |
35.76 |
0/1 |
| chr1 |
17085427 |
rs2002186 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.73 |
60.89 |
505 |
1000.00 |
4.23 |
61.19 |
0 |
61.19 |
0/1 |
| chr1 |
17085502 |
rs2329006 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
64.7 |
271 |
1000.00 |
0.50 |
67.53 |
0 |
67.53 |
0/1 |
| chr1 |
17085542 |
rs2261754 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
55.98 |
285 |
1000.00 |
6.64 |
22.81 |
0 |
22.81 |
0/1 |
| chr1 |
17085564 |
rs3851921 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.9 |
56.49 |
329 |
1000.00 |
4.65 |
34.95 |
0 |
34.95 |
0/1 |
| chr1 |
17085671 |
rs3863806 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.17 |
57.92 |
272 |
1000.00 |
0.08 |
26.47 |
0 |
26.47 |
0/1 |
| chr1 |
17085677 |
rs3863805 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
58.23 |
258 |
1000.00 |
3.74 |
26.74 |
0 |
26.74 |
0/1 |
| chr1 |
17085712 |
rs3863803 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.82 |
57.35 |
228 |
1000.00 |
19.12 |
28.51 |
0 |
28.51 |
0/1 |
| chr1 |
17085795 |
rs1057379 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.05 |
52.24 |
315 |
566.48 |
32.08 |
12.06 |
0 |
12.06 |
0/1 |
| chr1 |
17085834 |
rs2005622 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
63.87 |
284 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17086052 |
rs1057286 |
T |
C |
. |
PASS |
0.9992000 |
0.9928000 |
0.9990000 |
0.9871000 |
0.9939000 |
0.9948000 |
36.62 |
50.08 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17086085 |
rs200532237 |
G |
GC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.41 |
39.51 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17086217 |
rs367801802 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
49.0 |
122 |
336.05 |
10.75 |
14.75 |
0 |
14.75 |
0/1 |
| chr1 |
17086450 |
rs200858362 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.32 |
87 |
620.46 |
22.15 |
25.29 |
0 |
25.29 |
0/1 |
| chr1 |
17086464 |
rs201407059 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.4 |
78 |
568.17 |
16.15 |
25.64 |
0 |
25.64 |
0/1 |
| chr1 |
17087072 |
rs79486936 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
62.15 |
239 |
1000.00 |
2.95 |
40.17 |
0 |
40.17 |
0/1 |
| chr1 |
17087262 |
rs2926375 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.58 |
66.23 |
446 |
1000.00 |
16.20 |
38.57 |
0 |
38.57 |
0/1 |
| chr1 |
17087292 |
rs2179161 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.21 |
57.59 |
559 |
785.02 |
38.18 |
10.91 |
0 |
10.91 |
0/1 |
| chr1 |
17087299 |
rs2179162 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
59.06 |
592 |
990.11 |
30.52 |
11.49 |
0 |
11.49 |
0/1 |
| chr1 |
17087305 |
rs12046578 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.84 |
59.33 |
626 |
1000.00 |
28.96 |
11.98 |
0 |
11.98 |
0/1 |
| chr1 |
17087365 |
rs2446556 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.84 |
67.59 |
458 |
1000.00 |
2.19 |
79.91 |
0 |
79.91 |
0/1 |
| chr1 |
17087432 |
rs2446554 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.92 |
66.28 |
445 |
1000.00 |
11.94 |
24.94 |
0 |
24.94 |
0/1 |
| chr1 |
17087459 |
rs11576695 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.89 |
66.87 |
513 |
1000.00 |
15.23 |
20.86 |
0 |
20.86 |
0/1 |
| chr1 |
17087465 |
rs11260924 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.18 |
65.95 |
540 |
1000.00 |
2.55 |
27.04 |
0 |
27.04 |
0/1 |
| chr1 |
17087521 |
rs11589598 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
63.58 |
732 |
1000.00 |
7.48 |
18.72 |
0 |
18.72 |
0/1 |
| chr1 |
17087531 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.98 |
68.28 |
777 |
1000.00 |
3.22 |
13.64 |
0 |
13.64 |
0/1 |
| chr1 |
17087541 |
rs113982165,rs56364660 |
GGTGCT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.27 |
63.88 |
812 |
1000.00 |
3.37 |
32.27 |
0 |
32.27 |
0/1 |
| chr1 |
17087582 |
rs10907280 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.32 |
63.66 |
818 |
1000.00 |
4.13 |
51.71 |
0 |
51.71 |
0/1 |
| chr1 |
17087593 |
rs12145944 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.02 |
64.82 |
797 |
1000.00 |
5.76 |
19.95 |
0 |
19.95 |
0/1 |
| chr1 |
17087640 |
rs200412600 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
63.05 |
479 |
979.84 |
9.76 |
12.53 |
0 |
12.53 |
0/1 |
| chr1 |
17087682 |
rs9725203 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.78 |
64.13 |
232 |
1000.00 |
3.16 |
23.28 |
0 |
23.28 |
0/1 |
| chr1 |
17183210 |
. |
A |
G |
. |
PASS |
0.2557000 |
0.0720000 |
0.1240000 |
0.0835000 |
0.0470000 |
0.1284000 |
37.0 |
43.33 |
37 |
106.80 |
2.70 |
16.22 |
0 |
16.22 |
0/1 |
| chr1 |
17183222 |
rs139261556 |
G |
A |
. |
PASS |
0.2148000 |
0.0706000 |
0.1250000 |
0.0845000 |
0.0491000 |
0.1182000 |
35.91 |
49.55 |
43 |
285.58 |
2.11 |
25.58 |
0 |
25.58 |
0/1 |
| chr1 |
17183245 |
rs189990419 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
54.69 |
48 |
491.38 |
16.67 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
17183281 |
rs150144028 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.91 |
43 |
752.90 |
20.51 |
51.16 |
0 |
51.16 |
0/1 |
| chr1 |
17183451 |
. |
CCA |
CCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
40.81 |
32 |
375.47 |
37.50 |
12.50 |
0 |
50.00 |
0/1 |
| chr1 |
17183451 |
. |
CCA |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
40.81 |
32 |
375.47 |
12.50 |
37.50 |
0 |
50.00 |
0/1 |
| chr1 |
17183487 |
rs202228202 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
42.15 |
35 |
389.04 |
3.08 |
37.14 |
0 |
37.14 |
0/1 |
| chr1 |
17183572 |
rs200192602 |
G |
T |
. |
PASS |
0.0000000 |
0.0014000 |
0.0060000 |
0.0010000 |
0.0010000 |
0.0017971 |
37.0 |
47.0 |
39 |
96.62 |
2.56 |
15.38 |
0 |
15.38 |
0/1 |
| chr1 |
17195145 |
rs116833708 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
25.57 |
78 |
1000.00 |
8.79 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
17195231 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.6 |
55 |
219.69 |
101.82 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
17195301 |
rs199620659 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.21 |
85 |
1000.00 |
13.39 |
49.41 |
0 |
49.41 |
0/1 |
| chr1 |
17195387 |
rs370185151 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.71 |
69 |
925.29 |
9.52 |
40.58 |
0 |
40.58 |
0/1 |
| chr1 |
17195391 |
rs138058049 |
G |
C |
. |
PASS |
0.4501000 |
0.3285000 |
0.3740000 |
0.3191000 |
0.3517000 |
0.3724000 |
37.0 |
47.38 |
73 |
1000.00 |
6.59 |
57.53 |
0 |
57.53 |
0/1 |
| chr1 |
17195413 |
rs201549421 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
47.0 |
52 |
1000.00 |
10.77 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
17248500 |
rs6683035 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
70.0 |
64 |
1000.00 |
6.53 |
51.56 |
0 |
51.56 |
0/1 |
| chr1 |
17248532 |
rs6586566 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.41 |
70.0 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17249395 |
rs6586567 |
A |
G |
. |
PASS |
0.8132000 |
0.6816000 |
0.5774000 |
0.6839000 |
0.6094000 |
0.6817000 |
37.0 |
70.0 |
11 |
226.81 |
10.39 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
17251055 |
rs9435703 |
C |
T |
. |
PASS |
0.4887000 |
0.5562000 |
0.5516000 |
0.5785000 |
0.5706000 |
0.5447000 |
37.0 |
70.0 |
41 |
846.61 |
9.55 |
58.54 |
0 |
58.54 |
0/1 |
| chr1 |
17264296 |
rs9435792 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.13 |
25 |
518.84 |
2.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
17264863 |
rs4275496 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.08 |
25 |
435.29 |
18.46 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
17264890 |
rs72644310 |
T |
G |
. |
PASS |
0.0008000 |
0.0159000 |
0.0010000 |
0.0547000 |
0.0082000 |
0.0151760 |
36.4 |
69.25 |
42 |
660.36 |
10.48 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
17265327 |
rs4269813 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
70.0 |
24 |
259.22 |
8.33 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
17266355 |
. |
G |
GC |
. |
PASS |
0.0008000 |
0.0115000 |
0.0000000 |
0.0239000 |
0.0041000 |
0.0073882 |
34.0 |
70.0 |
12 |
70.90 |
0.00 |
25.00 |
0 |
33.33 |
0/1 |
| chr1 |
17266648 |
rs11203455 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.4 |
70.0 |
17 |
298.04 |
7.06 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
17273493 |
rs7537563 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.65 |
25 |
598.22 |
5.65 |
68.00 |
0 |
68.00 |
0/1 |
| chr1 |
17275102 |
rs12081151 |
C |
G |
. |
PASS |
0.2315000 |
0.1628000 |
0.1052000 |
0.1004000 |
0.2209000 |
0.1681000 |
37.0 |
69.95 |
36 |
773.97 |
1.01 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
17275337 |
rs143866013 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.09 |
81 |
183.20 |
26.04 |
13.58 |
0 |
13.58 |
0/1 |
| chr1 |
17280022 |
rs78911909 |
A |
T |
. |
PASS |
0.3691000 |
0.1873000 |
0.1101000 |
0.1491000 |
0.2566000 |
0.2256000 |
36.2 |
69.33 |
60 |
397.35 |
6.67 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
17280025 |
rs78271317 |
T |
C |
. |
PASS |
0.3691000 |
0.1873000 |
0.1101000 |
0.1491000 |
0.2566000 |
0.2256000 |
36.08 |
69.23 |
59 |
320.95 |
1.04 |
22.03 |
0 |
22.03 |
0/1 |
| chr1 |
17280045 |
rs74875673 |
T |
C |
. |
PASS |
0.3684000 |
0.1873000 |
0.1101000 |
0.1441000 |
0.2526000 |
0.2236000 |
37.0 |
69.83 |
39 |
100.76 |
46.15 |
15.38 |
0 |
15.38 |
0/1 |
| chr1 |
17281759 |
rs151046905 |
C |
CG |
. |
PASS |
0.2814000 |
0.1787000 |
0.1111000 |
0.1491000 |
0.2474000 |
0.1997000 |
36.25 |
70.0 |
25 |
449.47 |
8.57 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
17282425 |
rs2143808 |
G |
A |
. |
PASS |
0.1861000 |
0.1628000 |
0.1101000 |
0.1014000 |
0.2362000 |
0.1603000 |
37.0 |
70.0 |
46 |
956.87 |
4.51 |
58.70 |
0 |
58.70 |
0/1 |
| chr1 |
17282573 |
rs2273114 |
G |
A |
. |
PASS |
0.1861000 |
0.1628000 |
0.1101000 |
0.1014000 |
0.2362000 |
0.1603000 |
36.27 |
70.0 |
140 |
1000.00 |
0.35 |
47.14 |
0 |
47.14 |
0/1 |
| chr1 |
17285022 |
rs12097969 |
A |
G |
. |
PASS |
0.2746000 |
0.1715000 |
0.1101000 |
0.1014000 |
0.2362000 |
0.1849000 |
36.25 |
70.0 |
37 |
512.48 |
4.05 |
43.24 |
0 |
43.24 |
0/1 |
| chr1 |
17285298 |
rs41300134 |
C |
T |
. |
PASS |
0.1823000 |
0.1628000 |
0.1101000 |
0.1014000 |
0.2362000 |
0.1593000 |
37.0 |
70.0 |
67 |
1000.00 |
2.78 |
65.67 |
0 |
65.67 |
0/1 |
| chr1 |
17287414 |
rs2273113 |
T |
C |
. |
PASS |
0.1846000 |
0.3256000 |
0.2024000 |
0.4324000 |
0.3988000 |
0.2993000 |
37.0 |
70.0 |
61 |
995.26 |
8.37 |
47.54 |
0 |
47.54 |
0/1 |
| chr1 |
17287639 |
rs2273112 |
C |
T |
. |
PASS |
0.1823000 |
0.1614000 |
0.1101000 |
0.1014000 |
0.2372000 |
0.1593000 |
36.0 |
70.0 |
98 |
1000.00 |
1.87 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
17292571 |
rs72639732 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0005990 |
36.37 |
70.0 |
142 |
1000.00 |
5.24 |
40.14 |
0 |
40.14 |
0/1 |
| chr1 |
17295679 |
rs4920574 |
T |
C |
. |
PASS |
0.9947000 |
0.9496000 |
0.9663000 |
0.8907000 |
0.9070000 |
0.9447000 |
36.88 |
70.0 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17297289 |
rs9435656 |
C |
T |
. |
PASS |
0.3290000 |
0.7291000 |
0.8512000 |
0.7505000 |
0.6616000 |
0.6392000 |
35.36 |
70.0 |
47 |
708.98 |
8.12 |
46.81 |
0 |
46.81 |
0/1 |
| chr1 |
17299014 |
rs6661019 |
A |
C |
. |
PASS |
0.5499000 |
0.5245000 |
0.5556000 |
0.5626000 |
0.5552000 |
0.5511000 |
36.62 |
70.0 |
16 |
586.92 |
3.33 |
93.75 |
0 |
100.00 |
1/1 |
| chr1 |
17301672 |
rs761423 |
T |
C |
. |
PASS |
0.3835000 |
0.4380000 |
0.2401000 |
0.4443000 |
0.4008000 |
0.3778000 |
36.08 |
70.0 |
16 |
450.37 |
11.54 |
81.25 |
0 |
81.25 |
0/1 |
| chr1 |
17301780 |
rs761422 |
A |
G |
. |
PASS |
0.4743000 |
0.4582000 |
0.2401000 |
0.4861000 |
0.4131000 |
0.4153000 |
36.29 |
70.0 |
75 |
1000.00 |
3.45 |
45.33 |
0 |
45.33 |
0/1 |
| chr1 |
17303589 |
rs2235932 |
C |
T |
. |
PASS |
0.2224000 |
0.4914000 |
0.2331000 |
0.5795000 |
0.4438000 |
0.3768000 |
36.49 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17312592 |
rs15786 |
G |
A |
. |
PASS |
0.0008000 |
0.0187000 |
0.0010000 |
0.0437000 |
0.0072000 |
0.0131790 |
36.29 |
70.0 |
64 |
1000.00 |
0.00 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
17312743 |
rs3170740 |
C |
T |
. |
PASS |
0.1445000 |
0.4553000 |
0.2460000 |
0.5099000 |
0.3998000 |
0.3313000 |
36.81 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17313157 |
rs2076605 |
G |
A |
. |
PASS |
0.1679000 |
0.4582000 |
0.2599000 |
0.5080000 |
0.4335000 |
0.3468000 |
36.11 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17313343 |
rs9435659 |
G |
A |
. |
PASS |
0.1369000 |
0.4568000 |
0.2599000 |
0.5089000 |
0.4325000 |
0.3385000 |
35.22 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17313654 |
rs761421 |
C |
T |
. |
PASS |
0.1710000 |
0.4582000 |
0.2520000 |
0.5080000 |
0.4346000 |
0.3462000 |
36.29 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17314942 |
rs9435662 |
G |
A |
. |
PASS |
0.1369000 |
0.4568000 |
0.2599000 |
0.5080000 |
0.4346000 |
0.3387000 |
36.67 |
69.72 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17319011 |
rs2076603 |
G |
A |
. |
PASS |
0.4145000 |
0.5216000 |
0.2589000 |
0.6153000 |
0.4663000 |
0.4485000 |
36.51 |
70.0 |
123 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17323449 |
rs9435736 |
T |
C |
. |
PASS |
0.7383000 |
0.8876000 |
0.8383000 |
0.8211000 |
0.7219000 |
0.7925000 |
36.51 |
69.59 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17371152 |
rs12073028 |
T |
C |
. |
PASS |
0.4932000 |
0.5331000 |
0.2887000 |
0.6193000 |
0.4550000 |
0.4754000 |
37.0 |
69.23 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17380497 |
rs2746462 |
G |
T |
. |
PASS |
0.8797000 |
0.9769000 |
0.9960000 |
0.9722000 |
0.9918000 |
0.9571000 |
36.69 |
70.0 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17395480 |
rs2076599 |
G |
A |
. |
PASS |
0.2973000 |
0.5360000 |
0.3938000 |
0.5905000 |
0.4652000 |
0.4415000 |
36.57 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17395521 |
rs2076598 |
G |
A |
. |
PASS |
0.2973000 |
0.5360000 |
0.3938000 |
0.5905000 |
0.4652000 |
0.4415000 |
36.33 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17396498 |
rs2076596 |
T |
C |
. |
PASS |
0.2980000 |
0.5360000 |
0.3938000 |
0.5905000 |
0.4663000 |
0.4419000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17396703 |
rs2076595 |
T |
C |
. |
PASS |
0.3094000 |
0.5360000 |
0.3929000 |
0.5905000 |
0.4663000 |
0.4447000 |
36.41 |
70.0 |
123 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17398066 |
rs875219 |
G |
C |
. |
PASS |
0.4841000 |
0.5807000 |
0.4107000 |
0.6561000 |
0.5378000 |
0.5278000 |
36.7 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17398069 |
rs875218 |
T |
C |
. |
PASS |
0.4841000 |
0.5807000 |
0.4107000 |
0.6561000 |
0.5378000 |
0.5278000 |
36.37 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17401283 |
rs3818041 |
C |
T |
. |
PASS |
0.4849000 |
0.5821000 |
0.4028000 |
0.6561000 |
0.5378000 |
0.5266000 |
33.31 |
70.0 |
13 |
459.48 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17402116 |
rs3818035 |
G |
T |
. |
PASS |
0.4841000 |
0.5821000 |
0.4028000 |
0.6561000 |
0.5378000 |
0.5264000 |
35.59 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17402135 |
rs3818034 |
T |
C |
. |
PASS |
0.4834000 |
0.5821000 |
0.4028000 |
0.6561000 |
0.5378000 |
0.5262000 |
36.77 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17402159 |
rs3818033 |
G |
A |
. |
PASS |
0.4826000 |
0.5821000 |
0.4018000 |
0.6561000 |
0.5378000 |
0.5258000 |
36.03 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17402255 |
rs3818032 |
C |
T |
. |
PASS |
0.4834000 |
0.5807000 |
0.4028000 |
0.6561000 |
0.5378000 |
0.5260000 |
36.62 |
69.87 |
156 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17402347 |
rs2647205 |
C |
T |
. |
PASS |
0.9705000 |
0.9914000 |
0.9960000 |
0.9732000 |
0.9918000 |
0.9832000 |
36.62 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17402418 |
rs3818031 |
A |
G |
. |
PASS |
0.4834000 |
0.5821000 |
0.4038000 |
0.6561000 |
0.5368000 |
0.5262000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17405809 |
rs2057096 |
G |
A |
. |
PASS |
0.2950000 |
0.5259000 |
0.3879000 |
0.5726000 |
0.4642000 |
0.4345000 |
36.29 |
69.71 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17405916 |
rs2057095 |
C |
T |
. |
PASS |
0.2935000 |
0.5259000 |
0.3879000 |
0.5726000 |
0.4642000 |
0.4341000 |
36.76 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17405949 |
rs2057094 |
C |
T |
. |
PASS |
0.5461000 |
0.5533000 |
0.3879000 |
0.5736000 |
0.4642000 |
0.5048000 |
37.0 |
69.33 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17406015 |
rs2057093 |
C |
T |
. |
PASS |
0.8593000 |
0.9424000 |
0.9812000 |
0.8946000 |
0.9151000 |
0.9133000 |
37.0 |
68.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17410364 |
rs1883913 |
G |
A |
. |
PASS |
0.2572000 |
0.5274000 |
0.3879000 |
0.5726000 |
0.4642000 |
0.4247000 |
35.96 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17418883 |
rs2647184 |
A |
G |
. |
PASS |
0.9667000 |
0.9813000 |
0.9970000 |
0.9463000 |
0.9918000 |
0.9756000 |
36.53 |
69.74 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17418894 |
rs2273111 |
A |
G |
. |
PASS |
0.4266000 |
0.4986000 |
0.4048000 |
0.6332000 |
0.4959000 |
0.4872000 |
36.86 |
69.77 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17419066 |
rs11203298 |
T |
C |
. |
PASS |
0.4274000 |
0.4986000 |
0.4048000 |
0.6332000 |
0.4959000 |
0.4874000 |
37.0 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17422302 |
rs2076608 |
T |
C |
. |
PASS |
0.6868000 |
0.5303000 |
0.4196000 |
0.6322000 |
0.4959000 |
0.5631000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17431277 |
rs6701159 |
G |
T |
. |
PASS |
0.5983000 |
0.7032000 |
0.8284000 |
0.6869000 |
0.7751000 |
0.7115000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17431618 |
rs11203300 |
A |
G |
. |
PASS |
0.4554000 |
0.7435000 |
0.8373000 |
0.7694000 |
0.7699000 |
0.6967000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17550225 |
rs3003481 |
T |
C |
. |
PASS |
0.9894000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9968000 |
36.51 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17550303 |
rs2293913 |
T |
C |
. |
PASS |
0.1399000 |
0.2450000 |
0.2688000 |
0.3191000 |
0.2444000 |
0.2368000 |
37.0 |
70.0 |
13 |
346.11 |
0.00 |
76.92 |
0 |
76.92 |
0/1 |
| chr1 |
17551034 |
rs2293915 |
A |
T |
. |
PASS |
0.2799000 |
0.4323000 |
0.3909000 |
0.5606000 |
0.4622000 |
0.4153000 |
37.0 |
70.0 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17555316 |
rs2977233 |
C |
G |
. |
PASS |
0.3396000 |
0.2954000 |
0.0923000 |
0.4294000 |
0.3078000 |
0.2955000 |
36.59 |
70.0 |
65 |
967.07 |
11.03 |
44.62 |
0 |
44.62 |
0/1 |
| chr1 |
17555508 |
rs2977234 |
G |
T |
. |
PASS |
0.1831000 |
0.1902000 |
0.0585000 |
0.3539000 |
0.2914000 |
0.2145000 |
36.65 |
70.0 |
146 |
1000.00 |
1.93 |
47.26 |
0 |
47.26 |
0/1 |
| chr1 |
17609448 |
rs2293920 |
G |
T |
. |
PASS |
0.1725000 |
0.4150000 |
0.6230000 |
0.4374000 |
0.4540000 |
0.4050000 |
37.0 |
70.0 |
104 |
1000.00 |
4.02 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
17657664 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
90 |
68.41 |
4.44 |
10.00 |
0 |
10.00 |
0/1 |
| chr1 |
17707739 |
rs1204898 |
T |
C |
. |
PASS |
0.6089000 |
0.7305000 |
0.8155000 |
0.6978000 |
0.7883000 |
0.7202000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17718671 |
rs10709483 |
AG |
A |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.98 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17720439 |
rs6695849 |
T |
C |
. |
PASS |
0.4864000 |
0.6254000 |
0.5268000 |
0.6133000 |
0.6483000 |
0.5709000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17720615 |
rs10458537 |
A |
C |
. |
PASS |
0.4864000 |
0.6282000 |
0.5268000 |
0.6143000 |
0.6513000 |
0.5721000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17720686 |
rs34075690 |
AG |
A |
. |
PASS |
0.5439000 |
0.6398000 |
0.5258000 |
0.6143000 |
0.6513000 |
0.5887000 |
36.38 |
70.0 |
21 |
819.12 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17721388 |
rs6691485 |
C |
T |
. |
PASS |
0.4841000 |
0.6268000 |
0.5268000 |
0.6153000 |
0.6503000 |
0.5713000 |
36.71 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17723476 |
rs61476146 |
C |
CCA |
. |
PASS |
0.4024000 |
0.3689000 |
0.1716000 |
0.3728000 |
0.3650000 |
0.3381000 |
37.0 |
70.0 |
13 |
491.94 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17723739 |
rs12129196 |
G |
A |
. |
PASS |
0.3994000 |
0.3674000 |
0.1696000 |
0.3728000 |
0.3640000 |
0.3365000 |
35.2 |
70.0 |
20 |
763.89 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17725358 |
rs2244936 |
C |
G |
. |
PASS |
0.6755000 |
0.6542000 |
0.5377000 |
0.6123000 |
0.6380000 |
0.6248000 |
36.18 |
69.49 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17736578 |
rs2762890 |
A |
G |
. |
PASS |
0.6929000 |
0.6470000 |
0.5476000 |
0.6093000 |
0.6789000 |
0.6378000 |
37.0 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17739586 |
rs942457 |
G |
A |
. |
PASS |
0.3661000 |
0.3689000 |
0.1647000 |
0.3688000 |
0.3885000 |
0.3309000 |
36.68 |
69.89 |
76 |
1000.00 |
2.56 |
48.68 |
0 |
48.68 |
0/1 |
| chr1 |
17752000 |
rs1324368 |
A |
G |
. |
PASS |
0.3638000 |
0.3573000 |
0.1657000 |
0.3529000 |
0.3885000 |
0.3257000 |
36.77 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17929980 |
rs1193338 |
C |
G |
. |
PASS |
0.3230000 |
0.5173000 |
0.6448000 |
0.5268000 |
0.3517000 |
0.4613000 |
36.72 |
69.62 |
213 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
17944934 |
rs139656107 |
C |
T |
. |
PASS |
0.0008000 |
0.0043000 |
0.0000000 |
0.0239000 |
0.0051000 |
0.0065895 |
37.0 |
70.0 |
100 |
1000.00 |
1.37 |
63.00 |
0 |
63.00 |
0/1 |
| chr1 |
17965194 |
rs2297916 |
G |
A |
. |
PASS |
0.2050000 |
0.0720000 |
0.0139000 |
0.1312000 |
0.0818000 |
0.1092000 |
35.76 |
70.0 |
76 |
914.09 |
7.35 |
38.16 |
0 |
38.16 |
0/1 |
| chr1 |
17991052 |
rs6695710 |
T |
C |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
36.7 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18021867 |
rs2279816 |
T |
C |
. |
PASS |
0.6740000 |
0.8746000 |
0.9077000 |
0.8161000 |
0.9141000 |
0.8243000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18023290 |
rs2270979 |
C |
T |
. |
PASS |
0.5885000 |
0.8689000 |
0.8363000 |
0.8171000 |
0.9090000 |
0.7857000 |
36.0 |
69.44 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18023365 |
rs2270978 |
C |
T |
. |
PASS |
0.5855000 |
0.8674000 |
0.8363000 |
0.8171000 |
0.9090000 |
0.7847000 |
36.73 |
69.85 |
133 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18023509 |
rs2270977 |
T |
C |
. |
PASS |
0.7186000 |
0.8775000 |
0.8988000 |
0.8171000 |
0.9131000 |
0.8347000 |
36.68 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18023690 |
rs2270976 |
A |
G |
. |
PASS |
0.6694000 |
0.8746000 |
0.8988000 |
0.8211000 |
0.9162000 |
0.8227000 |
36.67 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18023877 |
rs11589634 |
G |
A |
. |
PASS |
0.1082000 |
0.0490000 |
0.0615000 |
0.1153000 |
0.1258000 |
0.0954000 |
36.27 |
70.0 |
87 |
1000.00 |
5.25 |
56.32 |
0 |
56.32 |
0/1 |
| chr1 |
18149510 |
rs694214 |
G |
T |
. |
PASS |
0.1430000 |
0.3228000 |
0.4315000 |
0.4374000 |
0.2485000 |
0.3057000 |
36.72 |
70.0 |
95 |
1000.00 |
5.58 |
45.26 |
0 |
45.26 |
0/1 |
| chr1 |
18149566 |
rs2296035 |
C |
A |
. |
PASS |
0.3215000 |
0.5807000 |
0.6865000 |
0.4732000 |
0.4315000 |
0.4828000 |
36.37 |
70.0 |
123 |
1000.00 |
1.20 |
46.34 |
0 |
46.34 |
0/1 |
| chr1 |
18152164 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
25 |
55.21 |
44.00 |
16.00 |
0 |
16.00 |
0/1 |
| chr1 |
18152582 |
rs478698 |
C |
T |
. |
PASS |
0.0204000 |
0.1023000 |
0.1796000 |
0.1948000 |
0.1564000 |
0.1254000 |
36.12 |
70.0 |
79 |
1000.00 |
0.80 |
51.90 |
0 |
51.90 |
0/1 |
| chr1 |
18323910 |
rs11203252 |
A |
C |
. |
PASS |
0.4879000 |
0.3184000 |
0.3403000 |
0.4135000 |
0.3926000 |
0.4012000 |
37.0 |
70.0 |
78 |
1000.00 |
12.50 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
18554345 |
rs61762155 |
T |
C |
. |
PASS |
0.0545000 |
0.2392000 |
0.1756000 |
0.2893000 |
0.2198000 |
0.1839000 |
37.0 |
70.0 |
14 |
301.32 |
1.59 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
18554356 |
rs3738087 |
C |
T |
. |
PASS |
0.0545000 |
0.2392000 |
0.1756000 |
0.2893000 |
0.2188000 |
0.1837000 |
36.0 |
70.0 |
19 |
399.57 |
3.51 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
18651820 |
rs223166 |
A |
G |
. |
PASS |
0.9962000 |
0.8991000 |
0.8581000 |
0.9374000 |
0.9458000 |
0.9333000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18661583 |
rs536540 |
T |
C |
. |
PASS |
0.7436000 |
0.2695000 |
0.3502000 |
0.1541000 |
0.2352000 |
0.3810000 |
37.0 |
70.0 |
18 |
247.52 |
16.67 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
18702988 |
rs10796450 |
T |
C |
. |
PASS |
0.9728000 |
0.9957000 |
0.9990000 |
0.9990000 |
0.9949000 |
0.9908000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18703208 |
rs10796451 |
C |
G |
. |
PASS |
0.7685000 |
0.7954000 |
0.7292000 |
0.7575000 |
0.6534000 |
0.7396000 |
35.0 |
70.0 |
14 |
159.85 |
38.10 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
18704862 |
rs1043459 |
A |
G |
. |
PASS |
0.7655000 |
0.5634000 |
0.6052000 |
0.4433000 |
0.5798000 |
0.6042000 |
35.8 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
18807536 |
rs7512414 |
G |
T |
. |
PASS |
0.1233000 |
0.1239000 |
0.0377000 |
0.1233000 |
0.0634000 |
0.0944000 |
36.69 |
70.0 |
91 |
1000.00 |
8.06 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
18807620 |
rs34109355 |
G |
C |
. |
PASS |
0.1233000 |
0.1239000 |
0.0377000 |
0.1233000 |
0.0634000 |
0.0944000 |
36.65 |
70.0 |
58 |
1000.00 |
10.34 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
18807755 |
rs34976233 |
G |
A |
. |
PASS |
0.1233000 |
0.1239000 |
0.0377000 |
0.1233000 |
0.0634000 |
0.0944000 |
36.35 |
70.0 |
72 |
1000.00 |
2.85 |
51.39 |
0 |
51.39 |
0/1 |
| chr1 |
18807781 |
rs35013594 |
C |
T |
. |
PASS |
0.1021000 |
0.1239000 |
0.0377000 |
0.1233000 |
0.0634000 |
0.0889000 |
36.69 |
70.0 |
78 |
1000.00 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
18807897 |
rs2992755 |
C |
G |
. |
PASS |
0.5688000 |
0.7147000 |
0.8958000 |
0.6113000 |
0.4847000 |
0.6470000 |
36.29 |
70.0 |
101 |
1000.00 |
8.85 |
33.66 |
0 |
33.66 |
0/1 |
| chr1 |
18808056 |
rs7515150 |
G |
C |
. |
PASS |
0.1233000 |
0.1239000 |
0.0377000 |
0.1233000 |
0.0634000 |
0.0944000 |
37.0 |
70.0 |
84 |
1000.00 |
1.61 |
44.05 |
0 |
44.05 |
0/1 |
| chr1 |
18808069 |
rs7528572 |
A |
G |
. |
PASS |
0.1233000 |
0.1239000 |
0.0377000 |
0.1233000 |
0.0634000 |
0.0944000 |
37.0 |
70.0 |
79 |
1000.00 |
3.31 |
45.57 |
0 |
45.57 |
0/1 |
| chr1 |
18808292 |
rs2992753 |
C |
A |
. |
PASS |
0.6604000 |
0.7277000 |
0.8958000 |
0.6113000 |
0.4847000 |
0.6729000 |
36.27 |
69.39 |
92 |
1000.00 |
3.03 |
35.87 |
0 |
35.87 |
0/1 |
| chr1 |
18808465 |
rs3007718 |
T |
A |
. |
PASS |
0.6611000 |
0.7277000 |
0.8948000 |
0.6113000 |
0.4836000 |
0.6727000 |
37.0 |
70.0 |
61 |
907.58 |
8.62 |
44.26 |
0 |
44.26 |
0/1 |
| chr1 |
18808526 |
rs2992752 |
A |
C |
. |
PASS |
0.6611000 |
0.7277000 |
0.8948000 |
0.6113000 |
0.4836000 |
0.6727000 |
37.0 |
70.0 |
53 |
597.49 |
4.17 |
35.85 |
0 |
35.85 |
0/1 |
| chr1 |
18809896 |
rs2992745 |
A |
T |
. |
PASS |
0.6248000 |
0.7061000 |
0.8958000 |
0.5815000 |
0.4243000 |
0.6428000 |
37.0 |
70.0 |
15 |
127.09 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
19027239 |
rs2743201 |
A |
G |
. |
PASS |
0.6430000 |
0.3876000 |
0.6042000 |
0.2575000 |
0.4703000 |
0.4886000 |
36.26 |
70.0 |
148 |
1000.00 |
9.42 |
43.92 |
0 |
43.92 |
0/1 |
| chr1 |
19029546 |
rs1416464 |
A |
G |
. |
PASS |
0.6445000 |
0.3876000 |
0.6071000 |
0.2575000 |
0.4714000 |
0.4898000 |
37.0 |
70.0 |
39 |
602.01 |
11.11 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
19175846 |
rs28374389 |
T |
C |
. |
PASS |
0.1369000 |
0.2450000 |
0.0020000 |
0.2087000 |
0.0695000 |
0.1260000 |
37.0 |
69.62 |
92 |
1000.00 |
1.44 |
57.61 |
0 |
57.61 |
0/1 |
| chr1 |
19181015 |
rs34447754 |
G |
C |
. |
PASS |
0.2602000 |
0.2507000 |
0.1032000 |
0.3191000 |
0.2556000 |
0.2382000 |
36.71 |
70.0 |
75 |
1000.00 |
0.20 |
54.67 |
0 |
54.67 |
0/1 |
| chr1 |
19181082 |
rs28470550 |
A |
C |
. |
PASS |
0.2602000 |
0.2536000 |
0.1032000 |
0.3201000 |
0.2556000 |
0.2388000 |
35.97 |
70.0 |
122 |
1000.00 |
3.70 |
57.38 |
0 |
57.38 |
0/1 |
| chr1 |
19181393 |
rs35874116 |
T |
C |
. |
PASS |
0.3389000 |
0.2695000 |
0.1042000 |
0.3241000 |
0.2771000 |
0.2670000 |
36.85 |
70.0 |
140 |
1000.00 |
2.86 |
55.71 |
0 |
55.71 |
0/1 |
| chr1 |
19184077 |
rs68081213 |
A |
G |
. |
PASS |
0.3631000 |
0.2853000 |
0.1052000 |
0.3260000 |
0.2751000 |
0.2758000 |
37.0 |
70.0 |
137 |
1000.00 |
2.16 |
50.36 |
0 |
50.36 |
0/1 |
| chr1 |
19186129 |
rs9701796 |
G |
C |
. |
PASS |
0.8207000 |
0.8415000 |
0.7748000 |
0.7833000 |
0.7751000 |
0.7979000 |
36.61 |
70.0 |
62 |
1000.00 |
3.23 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
19199473 |
rs28700162 |
T |
A |
. |
PASS |
0.1989000 |
0.5519000 |
0.6558000 |
0.4513000 |
0.6135000 |
0.4714000 |
36.17 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19200908 |
rs28529092 |
G |
C |
. |
PASS |
0.4349000 |
0.5807000 |
0.6637000 |
0.4692000 |
0.6421000 |
0.5485000 |
37.0 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19201184 |
rs6665917 |
G |
C |
. |
PASS |
0.5174000 |
0.7666000 |
0.7024000 |
0.7038000 |
0.7311000 |
0.6683000 |
36.29 |
70.0 |
17 |
658.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19201211 |
rs35163726 |
T |
TG |
. |
PASS |
0.5204000 |
0.7622000 |
0.6607000 |
0.7008000 |
0.7055000 |
0.6546000 |
37.0 |
70.0 |
11 |
408.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19201956 |
rs2230708 |
A |
G |
. |
PASS |
0.7050000 |
0.8112000 |
0.7063000 |
0.7386000 |
0.7587000 |
0.7372000 |
36.91 |
70.0 |
134 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19202770 |
rs7550822 |
T |
C |
. |
PASS |
0.7534000 |
0.9524000 |
1.0000000 |
0.9732000 |
0.9826000 |
0.9195000 |
36.72 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19202896 |
rs2230707 |
G |
A |
. |
PASS |
0.4569000 |
0.6513000 |
0.6002000 |
0.4453000 |
0.4857000 |
0.5160000 |
35.71 |
70.0 |
74 |
878.33 |
3.47 |
37.84 |
0 |
37.84 |
0/1 |
| chr1 |
19202917 |
rs7550938 |
T |
C |
. |
PASS |
0.4728000 |
0.7680000 |
0.7063000 |
0.7137000 |
0.7382000 |
0.6609000 |
35.92 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19202926 |
rs2230706 |
T |
C |
. |
PASS |
0.4728000 |
0.7680000 |
0.7044000 |
0.7117000 |
0.7382000 |
0.6601000 |
35.52 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19203997 |
rs2230705 |
C |
G |
. |
PASS |
0.7330000 |
0.7363000 |
0.4683000 |
0.7117000 |
0.5573000 |
0.6416000 |
36.1 |
68.92 |
173 |
1000.00 |
8.45 |
53.76 |
0 |
53.76 |
0/1 |
| chr1 |
19204154 |
rs6426813 |
G |
A |
. |
PASS |
0.6989000 |
0.8588000 |
0.9583000 |
0.7276000 |
0.8620000 |
0.8109000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19204173 |
rs6426814 |
A |
G |
. |
PASS |
0.9039000 |
0.8689000 |
0.8621000 |
0.7604000 |
0.7352000 |
0.8289000 |
37.0 |
70.0 |
17 |
166.99 |
15.69 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
19208145 |
rs112548638 |
G |
GGGTTGCCT |
. |
PASS |
0.9440000 |
0.9841000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9830000 |
36.56 |
70.0 |
52 |
1000.00 |
1.66 |
98.08 |
0 |
100.00 |
1/1 |
| chr1 |
19209543 |
rs6426611 |
A |
G |
. |
PASS |
0.8880000 |
0.9827000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9681000 |
37.0 |
69.23 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19215834 |
rs941495 |
T |
C |
. |
PASS |
0.9970000 |
0.9669000 |
1.0000000 |
0.9553000 |
0.9939000 |
0.9844000 |
37.0 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19216428 |
rs4592275 |
G |
A |
. |
PASS |
0.0522000 |
0.2219000 |
0.0992000 |
0.2177000 |
0.1472000 |
0.1370000 |
37.0 |
70.0 |
37 |
983.96 |
0.20 |
72.97 |
0 |
72.97 |
0/1 |
| chr1 |
19243589 |
rs3748586 |
A |
G |
. |
PASS |
0.3752000 |
0.3689000 |
0.2728000 |
0.5964000 |
0.5624000 |
0.4347000 |
37.0 |
70.0 |
24 |
480.07 |
7.14 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
19246320 |
rs41273181 |
G |
A |
. |
PASS |
0.2050000 |
0.0533000 |
0.0000000 |
0.0895000 |
0.0082000 |
0.0811000 |
35.33 |
70.0 |
55 |
1000.00 |
4.34 |
65.45 |
0 |
65.45 |
0/1 |
| chr1 |
19247509 |
rs35477144 |
G |
A |
. |
PASS |
0.2050000 |
0.0533000 |
0.0000000 |
0.0895000 |
0.0082000 |
0.0811000 |
37.0 |
70.0 |
54 |
1000.00 |
0.74 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
19331465 |
rs4912029 |
G |
T |
. |
PASS |
0.0938000 |
0.4986000 |
0.5565000 |
0.3111000 |
0.2904000 |
0.3251000 |
34.6 |
69.33 |
60 |
963.84 |
3.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
19331493 |
rs1078894 |
T |
C |
. |
PASS |
0.3752000 |
0.5720000 |
0.5585000 |
0.4602000 |
0.3160000 |
0.4449000 |
36.85 |
69.75 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19401405 |
rs2281748 |
G |
A |
. |
PASS |
0.1770000 |
0.4597000 |
0.6101000 |
0.4145000 |
0.3620000 |
0.3872000 |
35.62 |
70.0 |
98 |
1000.00 |
4.95 |
53.06 |
0 |
53.06 |
0/1 |
| chr1 |
19411129 |
rs1043905 |
A |
G |
. |
PASS |
0.8366000 |
0.7349000 |
0.8105000 |
0.6074000 |
0.5685000 |
0.7189000 |
36.56 |
70.0 |
110 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19413261 |
rs12584 |
T |
A |
. |
PASS |
0.5408000 |
0.6844000 |
0.7589000 |
0.5785000 |
0.4857000 |
0.6014000 |
36.8 |
69.66 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19413420 |
rs2274008 |
T |
G |
. |
PASS |
0.8366000 |
0.7334000 |
0.8105000 |
0.6064000 |
0.5675000 |
0.7183000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19415304 |
rs1043899 |
C |
T |
. |
PASS |
0.5091000 |
0.6787000 |
0.7589000 |
0.5775000 |
0.4847000 |
0.5919000 |
36.56 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19420392 |
rs1106839 |
G |
A |
. |
PASS |
0.8215000 |
0.7334000 |
0.8105000 |
0.6054000 |
0.5675000 |
0.7141000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19423565 |
rs2296105 |
T |
C |
. |
PASS |
0.5530000 |
0.6844000 |
0.7589000 |
0.5785000 |
0.4847000 |
0.6044000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19426199 |
rs2236377 |
G |
A |
. |
PASS |
0.8215000 |
0.7334000 |
0.8105000 |
0.6064000 |
0.5675000 |
0.7143000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19433449 |
rs6426677 |
A |
G |
. |
PASS |
0.8366000 |
0.7334000 |
0.8105000 |
0.6083000 |
0.5706000 |
0.7192000 |
37.0 |
70.0 |
134 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19437185 |
rs10916957 |
G |
T |
. |
PASS |
0.2844000 |
0.2003000 |
0.0704000 |
0.1650000 |
0.0900000 |
0.1677000 |
37.0 |
70.0 |
34 |
195.20 |
19.12 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
19440107 |
rs9661719 |
A |
G |
. |
PASS |
0.8215000 |
0.7334000 |
0.8105000 |
0.6054000 |
0.5613000 |
0.7129000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19441212 |
rs2274003 |
A |
G |
. |
PASS |
0.6611000 |
0.7133000 |
0.8006000 |
0.6054000 |
0.5532000 |
0.6641000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19446587 |
rs6693149 |
C |
T |
. |
PASS |
0.2897000 |
0.2017000 |
0.0704000 |
0.1660000 |
0.0879000 |
0.1691000 |
37.0 |
70.0 |
19 |
244.50 |
0.00 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
19447819 |
rs35802543 |
T |
C |
. |
PASS |
0.0477000 |
0.0461000 |
0.0010000 |
0.1064000 |
0.0276000 |
0.0459000 |
36.78 |
70.0 |
108 |
1000.00 |
1.95 |
50.93 |
0 |
50.93 |
0/1 |
| chr1 |
19447843 |
rs1044010 |
C |
G |
. |
PASS |
0.5424000 |
0.6844000 |
0.7589000 |
0.5775000 |
0.4796000 |
0.6004000 |
36.81 |
69.68 |
124 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19450938 |
rs6681943 |
G |
A |
. |
PASS |
0.0537000 |
0.0461000 |
0.0010000 |
0.1064000 |
0.0276000 |
0.0475000 |
37.0 |
70.0 |
16 |
170.00 |
12.50 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
19464773 |
rs2274001 |
C |
T |
. |
PASS |
0.7587000 |
0.7248000 |
0.8105000 |
0.6044000 |
0.5613000 |
0.6949000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19470662 |
rs4912050 |
T |
C |
. |
PASS |
0.0159000 |
0.0807000 |
0.0010000 |
0.0656000 |
0.0143000 |
0.0315000 |
37.0 |
70.0 |
11 |
101.50 |
9.09 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
19474975 |
rs2296108 |
T |
G |
. |
PASS |
0.4463000 |
0.5360000 |
0.7579000 |
0.4125000 |
0.4571000 |
0.5168000 |
37.0 |
70.0 |
10 |
142.13 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
19483209 |
rs10799710 |
A |
G |
. |
PASS |
0.5189000 |
0.5605000 |
0.7986000 |
0.4414000 |
0.5204000 |
0.5657000 |
33.57 |
70.0 |
19 |
178.71 |
12.03 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
19486839 |
rs946419 |
T |
C |
. |
PASS |
0.8374000 |
0.7320000 |
0.8105000 |
0.6064000 |
0.5613000 |
0.7171000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19487656 |
rs3748759 |
T |
C |
. |
PASS |
0.5197000 |
0.5548000 |
0.7986000 |
0.4294000 |
0.5184000 |
0.5623000 |
36.4 |
70.0 |
41 |
667.52 |
2.93 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
19488839 |
rs1999967 |
C |
A |
. |
PASS |
0.8207000 |
0.7305000 |
0.8115000 |
0.6044000 |
0.5613000 |
0.7123000 |
34.75 |
69.38 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19491514 |
rs12133185 |
G |
C |
. |
PASS |
0.0507000 |
0.0461000 |
0.0010000 |
0.1074000 |
0.0276000 |
0.0469000 |
37.0 |
70.0 |
27 |
383.35 |
20.37 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
19491857 |
rs3748757 |
T |
C |
. |
PASS |
0.8366000 |
0.7363000 |
0.8105000 |
0.6083000 |
0.5624000 |
0.7181000 |
36.7 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19499560 |
rs16862578 |
T |
C |
. |
PASS |
0.2814000 |
0.1671000 |
0.0109000 |
0.1640000 |
0.0307000 |
0.1386000 |
36.43 |
70.0 |
44 |
700.26 |
28.35 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
19499835 |
rs951908 |
G |
C |
. |
PASS |
0.8215000 |
0.7320000 |
0.8105000 |
0.6044000 |
0.5603000 |
0.7123000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19499873 |
rs952789 |
G |
T |
. |
PASS |
0.0061000 |
0.0403000 |
0.0010000 |
0.1054000 |
0.0266000 |
0.0337000 |
37.0 |
70.0 |
41 |
675.38 |
12.20 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
19499954 |
rs952790 |
G |
A |
. |
PASS |
0.0061000 |
0.0403000 |
0.0010000 |
0.1054000 |
0.0266000 |
0.0337000 |
36.6 |
69.33 |
70 |
971.19 |
6.80 |
41.43 |
0 |
42.86 |
0/1 |
| chr1 |
19500729 |
rs6694521 |
G |
A |
. |
PASS |
0.8215000 |
0.7320000 |
0.8105000 |
0.6044000 |
0.5603000 |
0.7123000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19510394 |
rs3762396 |
A |
G |
. |
PASS |
0.8374000 |
0.7305000 |
0.8105000 |
0.6064000 |
0.5613000 |
0.7169000 |
36.73 |
69.56 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19513570 |
rs72158799,rs59833909 |
TTA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.94 |
70.0 |
20 |
630.63 |
4.44 |
90.00 |
0 |
90.00 |
0/1 |
| chr1 |
19518659 |
rs11588032 |
G |
A |
. |
PASS |
0.4470000 |
0.4942000 |
0.6885000 |
0.4105000 |
0.4110000 |
0.4878000 |
32.64 |
70.0 |
27 |
297.70 |
2.02 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
19557281 |
rs12128595 |
G |
C |
. |
PASS |
0.1619000 |
0.0778000 |
0.0823000 |
0.1014000 |
0.0695000 |
0.1040000 |
35.67 |
70.0 |
18 |
273.12 |
11.11 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
19557713 |
rs2275403 |
G |
C |
. |
PASS |
0.8699000 |
0.6571000 |
0.7401000 |
0.5159000 |
0.4847000 |
0.6679000 |
36.72 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19565338 |
rs709682 |
C |
T |
. |
PASS |
0.3162000 |
0.0980000 |
0.1240000 |
0.1173000 |
0.1258000 |
0.1701000 |
35.91 |
70.0 |
36 |
754.10 |
6.57 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
19565344 |
rs709683 |
C |
G |
. |
PASS |
0.7315000 |
0.5101000 |
0.7401000 |
0.3469000 |
0.4601000 |
0.5723000 |
36.45 |
70.0 |
36 |
761.97 |
6.57 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
19566881 |
rs12084825 |
C |
T |
. |
PASS |
0.1051000 |
0.1455000 |
0.0010000 |
0.1660000 |
0.0225000 |
0.0859000 |
36.29 |
70.0 |
133 |
1000.00 |
0.49 |
51.13 |
0 |
51.13 |
0/1 |
| chr1 |
19568972 |
rs710865 |
A |
G |
. |
PASS |
0.7625000 |
0.5115000 |
0.7401000 |
0.3509000 |
0.4622000 |
0.5819000 |
35.87 |
70.0 |
103 |
1000.00 |
1.58 |
51.46 |
0 |
51.46 |
0/1 |
| chr1 |
19570426 |
rs2294944 |
C |
G |
. |
PASS |
0.2216000 |
0.0807000 |
0.0823000 |
0.1014000 |
0.0665000 |
0.1196000 |
35.5 |
70.0 |
66 |
731.18 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
19581226 |
rs735026 |
G |
A |
. |
PASS |
0.4932000 |
0.1830000 |
0.1032000 |
0.2266000 |
0.1534000 |
0.2518000 |
37.0 |
70.0 |
17 |
375.83 |
20.32 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
19581467 |
rs1774081 |
C |
T |
. |
PASS |
0.4932000 |
0.1830000 |
0.1012000 |
0.2266000 |
0.1534000 |
0.2514000 |
37.0 |
70.0 |
16 |
170.00 |
0.00 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
19582563 |
rs1557133 |
G |
A |
. |
PASS |
0.9206000 |
0.8833000 |
0.9266000 |
0.8549000 |
0.8978000 |
0.8990000 |
35.91 |
70.0 |
82 |
1000.00 |
3.77 |
53.66 |
0 |
53.66 |
0/1 |
| chr1 |
19583684 |
rs1774074 |
C |
T |
. |
PASS |
0.4932000 |
0.1830000 |
0.1012000 |
0.2266000 |
0.1534000 |
0.2514000 |
36.56 |
70.0 |
55 |
917.77 |
1.35 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
19583725 |
rs1738017 |
T |
C |
. |
PASS |
0.4932000 |
0.1830000 |
0.1012000 |
0.2266000 |
0.1534000 |
0.2514000 |
37.0 |
70.0 |
27 |
387.51 |
3.70 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
19584004 |
rs1042380 |
G |
A |
. |
PASS |
0.4932000 |
0.1830000 |
0.1012000 |
0.2266000 |
0.1534000 |
0.2514000 |
37.0 |
70.0 |
76 |
950.11 |
5.08 |
38.16 |
0 |
38.16 |
0/1 |
| chr1 |
19585207 |
rs2294939 |
G |
A |
. |
PASS |
0.0870000 |
0.0908000 |
0.1012000 |
0.1262000 |
0.1431000 |
0.1092000 |
37.0 |
70.0 |
64 |
1000.00 |
3.12 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
19596841 |
rs7536049 |
G |
A |
. |
PASS |
0.9221000 |
0.8689000 |
0.7966000 |
0.8857000 |
0.8538000 |
0.8688000 |
37.0 |
70.0 |
15 |
214.77 |
0.00 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
19611241 |
rs1738023 |
T |
C |
. |
PASS |
0.6415000 |
0.8646000 |
0.8502000 |
0.8579000 |
0.8967000 |
0.8077000 |
36.51 |
69.89 |
165 |
1000.00 |
2.24 |
44.24 |
0 |
44.24 |
0/1 |
| chr1 |
19611410 |
rs1968022 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
69.94 |
16 |
616.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19611487 |
rs59348345 |
A |
T |
. |
PASS |
0.2254000 |
0.0288000 |
0.0000000 |
0.0656000 |
0.0266000 |
0.0819000 |
36.7 |
69.3 |
100 |
1000.00 |
7.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
19612477 |
rs2231198 |
C |
T |
. |
PASS |
0.3646000 |
0.5432000 |
0.6905000 |
0.3817000 |
0.3896000 |
0.4633000 |
36.2 |
69.91 |
119 |
1000.00 |
7.13 |
37.82 |
0 |
37.82 |
0/1 |
| chr1 |
19652131 |
rs66513267 |
GT |
G |
. |
PASS |
0.2685000 |
0.1844000 |
0.2411000 |
0.1203000 |
0.1370000 |
0.1959000 |
37.0 |
68.89 |
18 |
619.03 |
33.33 |
16.67 |
0 |
100.00 |
0/1 |
| chr1 |
19652132 |
rs214315 |
T |
G |
. |
PASS |
0.6694000 |
0.7795000 |
0.7589000 |
0.8559000 |
0.8507000 |
0.7756000 |
37.0 |
68.89 |
18 |
619.03 |
6.67 |
83.33 |
0 |
100.00 |
0/1 |
| chr1 |
19671766 |
rs72651465 |
T |
A |
. |
PASS |
0.0008000 |
0.0058000 |
0.0000000 |
0.0060000 |
0.0010000 |
0.0023962 |
36.08 |
70.0 |
22 |
428.17 |
4.90 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
19701015 |
rs3748753 |
G |
A |
. |
PASS |
0.4947000 |
0.4726000 |
0.4444000 |
0.5924000 |
0.6053000 |
0.5228000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
19948507 |
rs728611 |
A |
G |
. |
PASS |
0.7057000 |
0.2032000 |
0.1419000 |
0.2346000 |
0.2873000 |
0.3462000 |
37.0 |
70.0 |
27 |
554.58 |
4.17 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
19950062 |
rs1737428 |
T |
C |
. |
PASS |
0.7050000 |
0.2032000 |
0.1419000 |
0.2346000 |
0.2853000 |
0.3456000 |
36.73 |
69.95 |
83 |
1000.00 |
1.20 |
53.01 |
0 |
53.01 |
0/1 |
| chr1 |
19972586 |
rs11810271 |
A |
G |
. |
PASS |
0.8593000 |
0.2594000 |
0.1617000 |
0.2495000 |
0.2740000 |
0.3990000 |
36.4 |
70.0 |
44 |
658.49 |
7.27 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
19981451 |
rs3828101 |
A |
G |
. |
PASS |
0.6172000 |
0.4741000 |
0.1677000 |
0.5070000 |
0.3517000 |
0.4329000 |
37.0 |
70.0 |
66 |
1000.00 |
6.06 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
19981791 |
rs2294630 |
A |
G |
. |
PASS |
0.6997000 |
0.4827000 |
0.1677000 |
0.5080000 |
0.3507000 |
0.4559000 |
36.54 |
70.0 |
40 |
921.15 |
8.08 |
65.00 |
0 |
65.00 |
0/1 |
| chr1 |
19983863 |
rs35989027,rs3833542 |
T |
TGG |
. |
PASS |
0.6543000 |
0.6023000 |
0.3929000 |
0.6769000 |
0.6472000 |
0.5976000 |
37.0 |
70.0 |
13 |
193.21 |
30.77 |
30.77 |
0 |
53.85 |
0/1 |
| chr1 |
20020992 |
. |
CAC |
CGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
70.0 |
140 |
1000.00 |
0.42 |
29.29 |
0 |
30.71 |
0/1 |
| chr1 |
20097822 |
rs11551819 |
G |
A |
. |
PASS |
0.1089000 |
0.0648000 |
0.0010000 |
0.1382000 |
0.1135000 |
0.0879000 |
36.47 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20097941 |
rs10917536 |
G |
T |
. |
PASS |
0.3918000 |
0.3833000 |
0.4315000 |
0.3698000 |
0.3139000 |
0.3790000 |
36.52 |
70.0 |
151 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20098066 |
rs41310424 |
A |
G |
. |
PASS |
0.1089000 |
0.0648000 |
0.0010000 |
0.1382000 |
0.1135000 |
0.0879000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20098079 |
rs41312010 |
C |
A |
. |
PASS |
0.1089000 |
0.0634000 |
0.0010000 |
0.1382000 |
0.1135000 |
0.0877000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20140973 |
rs35541730 |
G |
T |
. |
PASS |
0.0015000 |
0.0245000 |
0.0020000 |
0.0318000 |
0.0634000 |
0.0230000 |
36.8 |
69.66 |
116 |
1000.00 |
0.09 |
50.86 |
0 |
50.86 |
0/1 |
| chr1 |
20141283 |
rs1541184 |
C |
T |
. |
PASS |
0.1346000 |
0.2680000 |
0.1776000 |
0.0497000 |
0.1708000 |
0.1518000 |
36.09 |
70.0 |
95 |
1000.00 |
0.04 |
55.79 |
0 |
55.79 |
0/1 |
| chr1 |
20141528 |
rs1541185 |
C |
T |
. |
PASS |
0.2511000 |
0.3761000 |
0.3323000 |
0.2416000 |
0.2802000 |
0.2885000 |
36.14 |
69.64 |
108 |
1000.00 |
3.31 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
20216860 |
rs10799593 |
G |
A |
. |
PASS |
0.6241000 |
0.5375000 |
0.2331000 |
0.4970000 |
0.3487000 |
0.4541000 |
36.25 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20221013 |
rs372964689 |
TCTAAGTCAG |
T |
. |
PASS |
0.0620000 |
0.1873000 |
0.0685000 |
0.1233000 |
0.0706000 |
0.0946000 |
37.0 |
70.0 |
29 |
362.89 |
9.20 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
20221029 |
rs199563201 |
G |
GA |
. |
PASS |
0.0620000 |
0.1873000 |
0.0685000 |
0.1233000 |
0.0706000 |
0.0946000 |
37.0 |
70.0 |
29 |
365.90 |
16.09 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
20224152 |
rs61769077 |
G |
A |
. |
PASS |
0.0681000 |
0.0360000 |
0.0000000 |
0.0557000 |
0.0521000 |
0.0443000 |
35.86 |
70.0 |
51 |
667.18 |
4.48 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
20305065 |
rs10732279 |
C |
T |
. |
PASS |
0.7950000 |
0.7954000 |
0.9425000 |
0.7714000 |
0.8681000 |
0.8343000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20348296 |
rs35342858 |
C |
CTT |
. |
PASS |
0.5431000 |
0.6110000 |
0.5605000 |
0.6829000 |
0.5941000 |
0.5940000 |
37.0 |
70.0 |
16 |
112.64 |
20.00 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
20442054 |
rs584367 |
T |
C |
. |
PASS |
0.9660000 |
0.6974000 |
0.7569000 |
0.5934000 |
0.7485000 |
0.7694000 |
35.8 |
70.0 |
59 |
1000.00 |
5.08 |
50.85 |
0 |
50.85 |
0/1 |
| chr1 |
20466830 |
rs12065685 |
T |
C |
. |
PASS |
0.1755000 |
0.1499000 |
0.0734000 |
0.1163000 |
0.1687000 |
0.1382000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20470148 |
rs6657574 |
C |
T |
. |
PASS |
0.0681000 |
0.1023000 |
0.0198000 |
0.1531000 |
0.0787000 |
0.0823000 |
36.52 |
70.0 |
73 |
780.05 |
13.81 |
34.25 |
0 |
34.25 |
0/1 |
| chr1 |
20490518 |
rs6426616 |
T |
C |
. |
PASS |
0.7466000 |
0.4942000 |
0.7272000 |
0.5835000 |
0.6697000 |
0.6599000 |
36.76 |
70.0 |
95 |
1000.00 |
4.84 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
20501442 |
rs10916718 |
T |
C |
. |
PASS |
0.3986000 |
0.3588000 |
0.5486000 |
0.3996000 |
0.2863000 |
0.4016000 |
35.15 |
69.23 |
53 |
819.24 |
8.75 |
47.17 |
0 |
49.06 |
0/1 |
| chr1 |
20501670 |
rs41264517 |
G |
A |
. |
PASS |
0.0008000 |
0.0187000 |
0.0000000 |
0.0229000 |
0.0051000 |
0.0083866 |
35.0 |
70.0 |
32 |
348.44 |
12.50 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
20503710 |
rs10753483 |
G |
A |
. |
PASS |
0.4100000 |
0.5980000 |
0.6845000 |
0.5835000 |
0.7607000 |
0.5946000 |
37.0 |
70.0 |
12 |
349.11 |
6.67 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
20637043 |
rs12726937 |
C |
T |
. |
PASS |
0.1135000 |
0.3069000 |
0.3740000 |
0.2207000 |
0.2536000 |
0.2416000 |
35.96 |
70.0 |
49 |
756.74 |
1.24 |
46.94 |
0 |
46.94 |
0/1 |
| chr1 |
20637374 |
rs10916761 |
T |
C |
. |
PASS |
0.9349000 |
0.6873000 |
0.9325000 |
0.6451000 |
0.6380000 |
0.7839000 |
37.0 |
70.0 |
16 |
420.61 |
12.50 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
20649814 |
rs4655194 |
T |
C |
. |
PASS |
0.6324000 |
0.5519000 |
0.9087000 |
0.4324000 |
0.4836000 |
0.6076000 |
37.0 |
70.0 |
25 |
393.53 |
14.00 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
20656824 |
rs2072752 |
A |
G |
. |
PASS |
0.0113000 |
0.1859000 |
0.3601000 |
0.1670000 |
0.2311000 |
0.1799000 |
36.79 |
70.0 |
109 |
1000.00 |
2.02 |
53.21 |
0 |
53.21 |
0/1 |
| chr1 |
20657352 |
rs2072753 |
T |
C |
. |
PASS |
0.6210000 |
0.5562000 |
0.9097000 |
0.4314000 |
0.4826000 |
0.6050000 |
36.68 |
70.0 |
76 |
1000.00 |
0.21 |
48.68 |
0 |
48.68 |
0/1 |
| chr1 |
20662938 |
rs10916769 |
A |
G |
. |
PASS |
0.1641000 |
0.2046000 |
0.3601000 |
0.1720000 |
0.2321000 |
0.2240000 |
37.0 |
70.0 |
83 |
1000.00 |
0.12 |
46.99 |
0 |
46.99 |
0/1 |
| chr1 |
20671961 |
rs11582960 |
G |
A |
. |
PASS |
0.2443000 |
0.3458000 |
0.3532000 |
0.3181000 |
0.2781000 |
0.3017000 |
35.0 |
70.0 |
33 |
584.04 |
6.06 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
20672101 |
rs4655200 |
C |
T |
. |
PASS |
0.2443000 |
0.3458000 |
0.3532000 |
0.3171000 |
0.2761000 |
0.3011000 |
36.5 |
70.0 |
38 |
843.64 |
1.32 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
20680718 |
rs2072751 |
G |
A |
. |
PASS |
0.2080000 |
0.1801000 |
0.2887000 |
0.2237000 |
0.2382000 |
0.2294000 |
37.0 |
69.35 |
81 |
1000.00 |
6.93 |
38.27 |
0 |
38.27 |
0/1 |
| chr1 |
20680760 |
rs230180 |
A |
G |
. |
PASS |
0.5681000 |
0.5490000 |
0.9087000 |
0.4284000 |
0.4755000 |
0.5879000 |
35.5 |
68.75 |
39 |
494.46 |
0.32 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
20827216 |
rs595980 |
C |
T |
. |
PASS |
0.0272000 |
0.1023000 |
0.0010000 |
0.1988000 |
0.0501000 |
0.0713000 |
36.11 |
70.0 |
71 |
857.61 |
6.16 |
38.03 |
0 |
38.03 |
0/1 |
| chr1 |
20853195 |
rs476622 |
C |
A |
. |
PASS |
0.0666000 |
0.1052000 |
0.0010000 |
0.2008000 |
0.0501000 |
0.0825000 |
37.0 |
70.0 |
14 |
88.32 |
28.57 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
20940258 |
rs488991 |
T |
A |
. |
PASS |
0.9085000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9748000 |
37.0 |
68.75 |
16 |
628.69 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20945064 |
rs72650823 |
G |
A |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0003994 |
36.71 |
70.0 |
97 |
1000.00 |
5.94 |
43.30 |
0 |
43.30 |
0/1 |
| chr1 |
20960230 |
rs45530340 |
C |
T |
. |
PASS |
0.0530000 |
0.1571000 |
0.1270000 |
0.1938000 |
0.1452000 |
0.1286000 |
36.54 |
69.81 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20964328 |
rs2298298 |
A |
G |
. |
PASS |
0.7405000 |
0.8026000 |
0.8165000 |
0.8976000 |
0.8732000 |
0.8219000 |
35.05 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20971911 |
rs56125389 |
G |
C |
. |
PASS |
0.0061000 |
0.1412000 |
0.1260000 |
0.1829000 |
0.1483000 |
0.1122000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20971980 |
. |
C |
CAAAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
19 |
645.26 |
13.53 |
36.84 |
0 |
94.74 |
0/1 |
| chr1 |
20971980 |
rs67160805,rs55946432 |
C |
CAAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
70.0 |
19 |
645.26 |
15.04 |
36.84 |
0 |
94.74 |
0/1 |
| chr1 |
20972048 |
rs3131713 |
G |
A |
. |
PASS |
0.7352000 |
0.8026000 |
0.8145000 |
0.8956000 |
0.8783000 |
0.8207000 |
36.08 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20977221 |
rs686658 |
A |
T |
. |
PASS |
0.7844000 |
0.8112000 |
0.8165000 |
0.8917000 |
0.8783000 |
0.8345000 |
36.48 |
70.0 |
23 |
909.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20978832 |
rs6893 |
T |
C |
. |
PASS |
0.7421000 |
0.8040000 |
0.8274000 |
0.8936000 |
0.8783000 |
0.8249000 |
36.71 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20979307 |
rs11428148 |
G |
GT |
. |
PASS |
0.4781000 |
0.6095000 |
0.4206000 |
0.6054000 |
0.4356000 |
0.5020000 |
36.41 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20987873 |
rs537816 |
G |
C |
. |
PASS |
0.9017000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9730000 |
37.0 |
70.0 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20991273 |
rs56070322 |
G |
A |
. |
PASS |
0.0522000 |
0.1556000 |
0.1270000 |
0.1879000 |
0.1411000 |
0.1262000 |
35.6 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20992819 |
rs631357 |
G |
C |
. |
PASS |
0.7572000 |
0.7464000 |
0.5536000 |
0.8241000 |
0.6360000 |
0.7045000 |
36.76 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20992933 |
rs573268 |
G |
C |
. |
PASS |
0.9017000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9730000 |
36.4 |
69.0 |
20 |
783.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20996486 |
rs67188527 |
GA |
G |
. |
PASS |
0.3759000 |
0.6499000 |
0.5942000 |
0.5706000 |
0.5072000 |
0.5226000 |
32.62 |
70.0 |
30 |
997.39 |
3.91 |
96.67 |
0 |
96.67 |
1/1 |
| chr1 |
20996555 |
rs1125090 |
T |
C |
. |
PASS |
0.7179000 |
0.9553000 |
0.7946000 |
0.9920000 |
0.8783000 |
0.8526000 |
35.8 |
70.0 |
20 |
775.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
20996557 |
rs1125089 |
C |
T |
. |
PASS |
0.7179000 |
0.9553000 |
0.7946000 |
0.9920000 |
0.8783000 |
0.8526000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21012563 |
rs72650870 |
C |
T |
. |
PASS |
0.0136000 |
0.0159000 |
0.1032000 |
0.0169000 |
0.0123000 |
0.0323000 |
36.04 |
69.6 |
87 |
1000.00 |
5.15 |
57.47 |
0 |
57.47 |
0/1 |
| chr1 |
21016838 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
70.0 |
39 |
293.47 |
117.95 |
28.21 |
0 |
28.21 |
0/1 |
| chr1 |
21024901 |
rs522496 |
C |
T |
. |
PASS |
0.4455000 |
0.7190000 |
0.6498000 |
0.6869000 |
0.5675000 |
0.5968000 |
37.0 |
70.0 |
64 |
484.99 |
26.29 |
26.56 |
0 |
26.56 |
0/1 |
| chr1 |
21044219 |
rs601392 |
A |
C |
. |
PASS |
0.9887000 |
0.8040000 |
0.9940000 |
0.8390000 |
0.9407000 |
0.9247000 |
36.45 |
70.0 |
43 |
740.89 |
6.55 |
51.16 |
0 |
51.16 |
0/1 |
| chr1 |
21050958 |
rs592060 |
C |
T |
. |
PASS |
0.9849000 |
0.7622000 |
0.9802000 |
0.7714000 |
0.8282000 |
0.8796000 |
36.62 |
70.0 |
135 |
1000.00 |
0.58 |
47.41 |
0 |
47.41 |
0/1 |
| chr1 |
21091861 |
rs1985278 |
G |
T |
. |
PASS |
0.2179000 |
0.3876000 |
0.1091000 |
0.3638000 |
0.2873000 |
0.2624000 |
36.38 |
69.49 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21167404 |
rs2230573 |
A |
G |
. |
PASS |
0.7769000 |
0.9755000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9377000 |
36.51 |
70.0 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21175855 |
rs7525082 |
C |
A |
. |
PASS |
0.7753000 |
0.9755000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9373000 |
37.0 |
69.0 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21179969 |
rs7542882 |
G |
A |
. |
PASS |
0.7753000 |
0.9755000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9373000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21180181 |
rs2305463 |
C |
T |
. |
PASS |
0.3714000 |
0.5677000 |
0.8313000 |
0.5477000 |
0.6074000 |
0.5727000 |
37.0 |
70.0 |
24 |
967.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21188703 |
rs10916885 |
A |
T |
. |
PASS |
0.3714000 |
0.5677000 |
0.8313000 |
0.5477000 |
0.6227000 |
0.5757000 |
37.0 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21194510 |
rs2167811 |
A |
G |
. |
PASS |
0.5431000 |
0.6455000 |
0.9563000 |
0.6183000 |
0.7423000 |
0.6945000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21194583 |
. |
C |
CTTTTTTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
70.0 |
51 |
1000.00 |
0.98 |
23.53 |
0 |
100.00 |
0/1 |
| chr1 |
21194583 |
. |
C |
CTTTTTTTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.23 |
70.0 |
51 |
1000.00 |
29.02 |
29.41 |
0 |
100.00 |
0/1 |
| chr1 |
21671943 |
rs2072654 |
T |
G |
. |
PASS |
0.8109000 |
0.4928000 |
0.4167000 |
0.5616000 |
0.6759000 |
0.6110000 |
35.5 |
70.0 |
50 |
779.34 |
17.00 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
21672185 |
rs7540855 |
A |
T |
. |
PASS |
0.6876000 |
0.4164000 |
0.4167000 |
0.4563000 |
0.5879000 |
0.5296000 |
36.82 |
70.0 |
121 |
1000.00 |
15.36 |
53.72 |
0 |
53.72 |
0/1 |
| chr1 |
21737954 |
rs4061698 |
T |
C |
. |
PASS |
0.0076000 |
0.1095000 |
0.0804000 |
0.0726000 |
0.1677000 |
0.0807000 |
36.29 |
69.76 |
36 |
557.26 |
10.78 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
21738020 |
rs2316499 |
A |
G |
. |
PASS |
0.5613000 |
0.7118000 |
0.7619000 |
0.7893000 |
0.5204000 |
0.6603000 |
37.0 |
68.71 |
58 |
1000.00 |
3.94 |
60.34 |
0 |
60.34 |
0/1 |
| chr1 |
21739651 |
rs72657187 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0040000 |
0.0010000 |
0.0009984 |
37.0 |
69.8 |
11 |
143.27 |
7.27 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
21750970 |
rs149361209 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.11 |
12 |
303.20 |
0.00 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
21751068 |
rs71512975 |
C |
G |
. |
PASS |
0.6014000 |
0.9424000 |
0.9911000 |
0.9940000 |
0.9775000 |
0.8794000 |
37.0 |
45.91 |
23 |
921.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21751116 |
rs200628132 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.3 |
37 |
269.71 |
2.70 |
27.03 |
0 |
27.03 |
0/1 |
| chr1 |
21751142 |
rs150916531 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
49.26 |
41 |
1000.00 |
4.09 |
75.61 |
0 |
75.61 |
0/1 |
| chr1 |
21751214 |
rs72476501 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.2 |
53.15 |
37 |
655.54 |
1.08 |
54.05 |
0 |
54.05 |
0/1 |
| chr1 |
21754981 |
rs148590544 |
C |
G |
. |
PASS |
0.0250000 |
0.1066000 |
0.0724000 |
0.0726000 |
0.1677000 |
0.0833000 |
36.5 |
62.29 |
46 |
815.40 |
15.22 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
21754996 |
rs12024079 |
C |
T |
. |
PASS |
0.5416000 |
0.9597000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.8730000 |
36.03 |
60.38 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21755013 |
rs201191572 |
C |
T |
. |
PASS |
0.0250000 |
0.1066000 |
0.0724000 |
0.0726000 |
0.1677000 |
0.0833000 |
37.0 |
62.23 |
30 |
420.25 |
27.18 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
21755055 |
rs12024104 |
C |
A |
. |
PASS |
0.3737000 |
0.7896000 |
0.8373000 |
0.8529000 |
0.6922000 |
0.6831000 |
36.37 |
52.05 |
19 |
741.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21755135 |
rs41302024 |
T |
G |
. |
PASS |
0.2042000 |
0.5346000 |
0.7560000 |
0.5328000 |
0.4540000 |
0.4758000 |
35.5 |
61.0 |
21 |
544.48 |
0.60 |
76.19 |
0 |
76.19 |
0/1 |
| chr1 |
21755188 |
rs41306571 |
C |
G |
. |
PASS |
0.0023000 |
0.0159000 |
0.0000000 |
0.0199000 |
0.0041000 |
0.0075879 |
37.0 |
61.08 |
40 |
929.01 |
19.23 |
65.00 |
0 |
65.00 |
0/1 |
| chr1 |
21755345 |
rs41302023 |
T |
C |
. |
PASS |
0.0681000 |
0.1772000 |
0.0823000 |
0.2217000 |
0.1973000 |
0.1422000 |
36.6 |
68.79 |
159 |
1000.00 |
7.08 |
57.23 |
0 |
57.23 |
0/1 |
| chr1 |
21755347 |
rs41310392 |
C |
T |
. |
PASS |
0.2050000 |
0.5360000 |
0.7560000 |
0.5318000 |
0.4540000 |
0.4760000 |
36.29 |
68.46 |
160 |
1000.00 |
8.46 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
21755453 |
rs3856177 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
64.45 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21755539 |
rs3855556 |
C |
A |
. |
PASS |
0.3896000 |
0.7896000 |
0.8383000 |
0.8559000 |
0.6912000 |
0.6879000 |
33.4 |
65.5 |
18 |
290.88 |
26.67 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
21755756 |
rs56343055 |
G |
C |
. |
PASS |
0.3903000 |
0.7896000 |
0.8393000 |
0.8559000 |
0.6922000 |
0.6885000 |
36.54 |
67.42 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21755867 |
rs7522332 |
A |
G |
. |
PASS |
0.3903000 |
0.7896000 |
0.8393000 |
0.8559000 |
0.6922000 |
0.6885000 |
36.45 |
62.86 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21755906 |
rs3738922 |
G |
A |
. |
PASS |
0.3903000 |
0.7896000 |
0.8393000 |
0.8559000 |
0.6922000 |
0.6885000 |
37.0 |
62.09 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21756008 |
rs3894725 |
G |
T |
. |
PASS |
0.3903000 |
0.7896000 |
0.8403000 |
0.8559000 |
0.6922000 |
0.6887000 |
36.39 |
68.36 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21756069 |
rs7532750 |
G |
A |
. |
PASS |
0.3903000 |
0.7896000 |
0.8403000 |
0.8559000 |
0.6922000 |
0.6887000 |
35.76 |
68.41 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21761072 |
rs118111934 |
T |
C |
. |
PASS |
0.0076000 |
0.0893000 |
0.0794000 |
0.0239000 |
0.0798000 |
0.0507000 |
36.0 |
70.0 |
30 |
366.46 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
21761864 |
rs72657197 |
C |
T |
. |
PASS |
0.0015000 |
0.0893000 |
0.0794000 |
0.0239000 |
0.0798000 |
0.0491000 |
37.0 |
69.75 |
34 |
700.60 |
10.00 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
21763132 |
rs10916990 |
T |
A |
. |
PASS |
0.4546000 |
0.5865000 |
0.5843000 |
0.5517000 |
0.4959000 |
0.5266000 |
37.0 |
70.0 |
13 |
216.64 |
4.40 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
21786176 |
rs4654749 |
A |
G |
. |
PASS |
0.9297000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9810000 |
37.0 |
69.81 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21795388 |
rs1827293 |
A |
G |
. |
PASS |
0.1445000 |
0.4755000 |
0.5804000 |
0.5417000 |
0.4826000 |
0.4239000 |
37.0 |
70.0 |
40 |
431.93 |
9.29 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
21795432 |
rs35175190 |
G |
GA |
. |
PASS |
0.2950000 |
0.2839000 |
0.2321000 |
0.1909000 |
0.4121000 |
0.2827000 |
35.91 |
70.0 |
31 |
670.02 |
3.23 |
64.52 |
0 |
64.52 |
0/1 |
| chr1 |
21797996 |
rs2004380 |
G |
A |
. |
PASS |
0.1437000 |
0.4755000 |
0.5804000 |
0.5427000 |
0.4826000 |
0.4239000 |
37.0 |
70.0 |
14 |
92.47 |
57.14 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
21799489 |
rs1971327 |
T |
C |
. |
PASS |
0.5371000 |
0.7925000 |
0.8125000 |
0.7724000 |
0.9182000 |
0.7496000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21799823 |
rs1971328 |
A |
G |
. |
PASS |
0.4380000 |
0.7594000 |
0.8125000 |
0.7336000 |
0.8947000 |
0.7065000 |
37.0 |
69.8 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21799924 |
rs80145424 |
G |
A |
. |
PASS |
0.0076000 |
0.0893000 |
0.0813000 |
0.0249000 |
0.0798000 |
0.0513000 |
35.91 |
69.82 |
44 |
730.02 |
4.55 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
21801346 |
rs7531217 |
G |
A |
. |
PASS |
0.5371000 |
0.7925000 |
0.8125000 |
0.7724000 |
0.9182000 |
0.7496000 |
36.44 |
69.61 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21804815 |
rs7535654 |
T |
G |
. |
PASS |
0.7965000 |
0.9726000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9421000 |
36.61 |
69.97 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21805978 |
rs4654948 |
G |
A |
. |
PASS |
0.5363000 |
0.7925000 |
0.8125000 |
0.7714000 |
0.9182000 |
0.7492000 |
36.31 |
69.96 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21809850 |
rs199951062 |
T |
C |
. |
PASS |
0.0166000 |
0.1023000 |
0.0804000 |
0.0288000 |
0.0838000 |
0.0569000 |
37.0 |
59.38 |
17 |
459.37 |
1.81 |
76.47 |
0 |
76.47 |
0/1 |
| chr1 |
21809876 |
rs151217608 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.57 |
17 |
204.60 |
25.21 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
21887290 |
rs1767430 |
C |
A |
. |
PASS |
0.2428000 |
0.2666000 |
0.1359000 |
0.4235000 |
0.2485000 |
0.2620000 |
35.8 |
70.0 |
20 |
308.87 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
21889635 |
rs1780316 |
T |
C |
. |
PASS |
0.8495000 |
0.9539000 |
0.9821000 |
0.9374000 |
0.9581000 |
0.9295000 |
36.57 |
69.76 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21890464 |
rs1767428 |
A |
G |
. |
PASS |
0.9508000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9864000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21896767 |
rs1256328 |
C |
T |
. |
PASS |
0.0900000 |
0.1210000 |
0.1845000 |
0.1809000 |
0.2127000 |
0.1556000 |
37.0 |
70.0 |
31 |
667.86 |
6.11 |
61.29 |
0 |
61.29 |
0/1 |
| chr1 |
21902436 |
rs61778393 |
G |
T |
. |
PASS |
0.0030000 |
0.0072000 |
0.0000000 |
0.0358000 |
0.0051000 |
0.0099840 |
36.5 |
70.0 |
62 |
767.24 |
11.02 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
21904131 |
rs34605986 |
T |
C |
. |
PASS |
0.0287000 |
0.0576000 |
0.0030000 |
0.1103000 |
0.1718000 |
0.0719000 |
36.78 |
69.63 |
109 |
1000.00 |
2.72 |
49.54 |
0 |
49.54 |
0/1 |
| chr1 |
21904206 |
rs1697405 |
C |
T |
. |
PASS |
0.2405000 |
0.3833000 |
0.3135000 |
0.3738000 |
0.4192000 |
0.3367000 |
36.43 |
70.0 |
37 |
721.33 |
5.92 |
56.76 |
0 |
56.76 |
0/1 |
| chr1 |
21904267 |
rs1697406 |
A |
G |
. |
PASS |
0.8555000 |
0.9078000 |
0.8006000 |
0.8638000 |
0.9315000 |
0.8682000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21925108 |
rs2794278 |
T |
C |
. |
PASS |
0.9312000 |
0.9366000 |
0.9812000 |
0.8907000 |
0.9274000 |
0.9331000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21928344 |
rs2275366 |
C |
G |
. |
PASS |
0.1445000 |
0.5605000 |
0.5853000 |
0.3509000 |
0.4254000 |
0.3872000 |
36.65 |
70.0 |
64 |
1000.00 |
1.65 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
21929260 |
rs829368 |
A |
G |
. |
PASS |
0.9244000 |
0.9438000 |
0.9802000 |
0.8917000 |
0.9274000 |
0.9323000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
21932530 |
rs1767443 |
C |
A |
. |
PASS |
0.7337000 |
0.8487000 |
0.9484000 |
0.7455000 |
0.7393000 |
0.7963000 |
36.61 |
70.0 |
56 |
1000.00 |
10.94 |
55.36 |
0 |
55.36 |
0/1 |
| chr1 |
21934667 |
rs829371 |
G |
A |
. |
PASS |
0.4675000 |
0.3401000 |
0.4355000 |
0.5020000 |
0.4581000 |
0.4485000 |
36.35 |
69.64 |
119 |
1000.00 |
13.26 |
46.22 |
0 |
46.22 |
0/1 |
| chr1 |
21934693 |
rs72660316 |
T |
C |
. |
PASS |
0.0900000 |
0.0836000 |
0.0327000 |
0.1441000 |
0.1881000 |
0.1076000 |
36.25 |
70.0 |
156 |
1000.00 |
3.91 |
51.28 |
0 |
51.28 |
0/1 |
| chr1 |
21935433 |
rs861212 |
G |
T |
. |
PASS |
0.2209000 |
0.5101000 |
0.6518000 |
0.4533000 |
0.5297000 |
0.4547000 |
37.0 |
70.0 |
87 |
1000.00 |
0.46 |
57.47 |
0 |
57.47 |
0/1 |
| chr1 |
21935467 |
rs12130950 |
G |
A |
. |
PASS |
0.1142000 |
0.0836000 |
0.0347000 |
0.1412000 |
0.1881000 |
0.1138000 |
37.0 |
70.0 |
58 |
878.98 |
10.88 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
21938375 |
rs2275364 |
T |
G |
. |
PASS |
0.3343000 |
0.2478000 |
0.1310000 |
0.3579000 |
0.2311000 |
0.2660000 |
35.91 |
70.0 |
40 |
737.91 |
14.09 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
21939741 |
rs1256282 |
G |
C |
. |
PASS |
0.4085000 |
0.6484000 |
0.5357000 |
0.4264000 |
0.4601000 |
0.4810000 |
37.0 |
70.0 |
19 |
323.90 |
6.32 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
21940555 |
rs2275363 |
C |
T |
. |
PASS |
0.3646000 |
0.2781000 |
0.4196000 |
0.4443000 |
0.4325000 |
0.3930000 |
36.61 |
69.68 |
114 |
1000.00 |
6.11 |
54.39 |
0 |
54.39 |
0/1 |
| chr1 |
21943820 |
rs2275360 |
G |
A |
. |
PASS |
0.1884000 |
0.5072000 |
0.5298000 |
0.2495000 |
0.2526000 |
0.3261000 |
36.33 |
70.0 |
106 |
1000.00 |
9.36 |
50.94 |
0 |
50.94 |
0/1 |
| chr1 |
21944352 |
rs748488 |
A |
G |
. |
PASS |
0.2572000 |
0.1960000 |
0.1052000 |
0.2893000 |
0.2055000 |
0.2145000 |
37.0 |
70.0 |
37 |
900.42 |
0.86 |
67.57 |
0 |
67.57 |
0/1 |
| chr1 |
21945530 |
rs77539762 |
C |
T |
. |
PASS |
0.1452000 |
0.0303000 |
0.0000000 |
0.0378000 |
0.0194000 |
0.0539000 |
37.0 |
70.0 |
106 |
1000.00 |
9.91 |
45.28 |
0 |
45.28 |
0/1 |
| chr1 |
21946415 |
rs1681255 |
G |
A |
. |
PASS |
0.5885000 |
0.8646000 |
0.9802000 |
0.8012000 |
0.8896000 |
0.8071000 |
37.0 |
70.0 |
17 |
250.52 |
35.29 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
21996848 |
rs829398 |
A |
G |
. |
PASS |
0.4962000 |
0.4914000 |
0.4494000 |
0.5944000 |
0.6564000 |
0.5371000 |
36.71 |
70.0 |
76 |
1000.00 |
7.32 |
53.95 |
0 |
53.95 |
0/1 |
| chr1 |
22013771 |
rs10493008 |
G |
A |
. |
PASS |
0.3374000 |
0.6657000 |
0.6359000 |
0.4115000 |
0.4427000 |
0.4784000 |
35.84 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22030121 |
rs55633304 |
A |
G |
. |
PASS |
0.0590000 |
0.0591000 |
0.0069000 |
0.1282000 |
0.0542000 |
0.0615000 |
35.8 |
70.0 |
58 |
1000.00 |
3.60 |
79.31 |
0 |
94.83 |
0/1 |
| chr1 |
22030122 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
59 |
165.89 |
26.37 |
15.25 |
0 |
15.25 |
0/1 |
| chr1 |
22050649 |
rs2275668 |
C |
A |
. |
PASS |
0.5968000 |
0.8213000 |
0.6587000 |
0.7455000 |
0.6881000 |
0.6881000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22063149 |
rs10753517 |
G |
A |
. |
PASS |
0.3873000 |
0.7421000 |
0.6567000 |
0.6252000 |
0.6309000 |
0.5861000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22082923 |
rs10458384 |
G |
A |
. |
PASS |
0.5779000 |
0.8141000 |
0.6657000 |
0.7147000 |
0.6646000 |
0.6727000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22109370 |
rs10917042 |
G |
A |
. |
PASS |
0.0280000 |
0.5274000 |
0.5893000 |
0.2197000 |
0.1973000 |
0.2817000 |
36.44 |
70.0 |
108 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22141206 |
rs10917051 |
A |
C |
. |
PASS |
0.4697000 |
0.7695000 |
0.6319000 |
0.6988000 |
0.5869000 |
0.6128000 |
36.25 |
69.58 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22168968 |
rs66533518 |
G |
A |
. |
PASS |
0.2231000 |
0.3184000 |
0.1915000 |
0.1779000 |
0.1616000 |
0.2089000 |
35.2 |
70.0 |
20 |
763.89 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22169134 |
rs72662421 |
G |
A |
. |
PASS |
0.0038000 |
0.1844000 |
0.0020000 |
0.1153000 |
0.0593000 |
0.0617000 |
35.8 |
70.0 |
20 |
775.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22175031 |
rs6426726 |
G |
T |
. |
PASS |
0.2405000 |
0.3300000 |
0.1915000 |
0.1958000 |
0.1636000 |
0.2191000 |
35.15 |
70.0 |
26 |
998.35 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22186234 |
rs10917056 |
A |
G |
. |
PASS |
0.7716000 |
0.9798000 |
0.9712000 |
0.9940000 |
0.9969000 |
0.9293000 |
36.68 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22191454 |
rs897471 |
G |
A |
. |
PASS |
0.5893000 |
0.7810000 |
0.8889000 |
0.7256000 |
0.5276000 |
0.6915000 |
36.47 |
69.85 |
135 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22199081 |
rs2501266 |
A |
T |
. |
PASS |
0.9266000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9798000 |
36.67 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22199821 |
rs2454290 |
G |
A |
. |
PASS |
0.4198000 |
0.8674000 |
0.9722000 |
0.8618000 |
0.7280000 |
0.7420000 |
36.22 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22200835 |
rs2445135 |
C |
G |
. |
PASS |
0.9206000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9782000 |
37.0 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22201331 |
rs2290494 |
C |
T |
. |
PASS |
0.1452000 |
0.4164000 |
0.5972000 |
0.2107000 |
0.2127000 |
0.3001000 |
36.2 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22202109 |
rs2501265 |
C |
T |
. |
PASS |
0.7935000 |
0.9784000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9423000 |
36.67 |
69.44 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22204630 |
rs7513608 |
G |
A |
. |
PASS |
0.1664000 |
0.4135000 |
0.6052000 |
0.2107000 |
0.2270000 |
0.3097000 |
35.93 |
69.56 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22205408 |
rs2454294 |
T |
C |
. |
PASS |
0.9039000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9736000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22205466 |
rs2454293 |
T |
C |
. |
PASS |
0.8525000 |
0.9899000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9595000 |
36.59 |
70.0 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22206649 |
rs989994 |
T |
C |
. |
PASS |
0.7466000 |
0.9784000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9299000 |
36.76 |
70.0 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22206942 |
rs1874793 |
G |
A |
. |
PASS |
0.7466000 |
0.9784000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9299000 |
36.89 |
70.0 |
113 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22207235 |
rs1874792 |
T |
C |
. |
PASS |
0.9039000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9736000 |
36.76 |
70.0 |
152 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22207804 |
rs60267433,rs139046040 |
ACCCAGGGTGGCAG |
A |
. |
PASS |
0.8533000 |
0.9899000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9597000 |
35.63 |
69.76 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22208030 |
rs921847 |
C |
T |
. |
PASS |
0.7632000 |
0.9769000 |
1.0000000 |
0.9891000 |
0.9683000 |
0.9259000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22211217 |
rs2290493 |
G |
A |
. |
PASS |
0.1672000 |
0.4135000 |
0.6062000 |
0.2097000 |
0.2311000 |
0.3107000 |
36.74 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22211222 |
rs4654994 |
T |
C |
. |
PASS |
0.8260000 |
0.9092000 |
0.9583000 |
0.9254000 |
0.8885000 |
0.8964000 |
37.0 |
70.0 |
99 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22214127 |
rs2229478 |
A |
G |
. |
PASS |
0.7065000 |
0.5793000 |
0.6498000 |
0.3191000 |
0.3824000 |
0.5363000 |
37.0 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22214645 |
rs3767140 |
C |
A |
. |
PASS |
0.2867000 |
0.4251000 |
0.6062000 |
0.2117000 |
0.2198000 |
0.3421000 |
36.43 |
70.0 |
21 |
825.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22217108 |
rs2501260 |
G |
A |
. |
PASS |
0.8139000 |
0.9798000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9481000 |
36.73 |
69.78 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22263551 |
rs71514204 |
G |
A |
. |
PASS |
0.0129000 |
0.3718000 |
0.3938000 |
0.2157000 |
0.2382000 |
0.2240000 |
36.37 |
70.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22303702 |
rs4415533 |
C |
A |
. |
PASS |
0.4115000 |
0.5288000 |
0.6101000 |
0.3181000 |
0.3589000 |
0.4387000 |
35.71 |
69.36 |
112 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22307252 |
rs12401939 |
G |
A |
. |
PASS |
0.0121000 |
0.4092000 |
0.3810000 |
0.2068000 |
0.2096000 |
0.2191000 |
37.0 |
58.14 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22307340 |
rs7528228 |
C |
T |
. |
PASS |
0.7110000 |
0.9352000 |
0.7550000 |
0.9722000 |
0.9458000 |
0.8492000 |
36.51 |
56.78 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22307358 |
rs7528300 |
C |
G |
. |
PASS |
0.7042000 |
0.9366000 |
0.7540000 |
0.9722000 |
0.9468000 |
0.8476000 |
36.19 |
61.31 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22307538 |
rs7528405 |
C |
T |
. |
PASS |
0.8442000 |
0.9625000 |
0.7550000 |
0.9920000 |
0.9519000 |
0.8934000 |
36.41 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22307743 |
rs6689384 |
T |
C |
. |
PASS |
0.7118000 |
0.9366000 |
0.7470000 |
0.9722000 |
0.9427000 |
0.8474000 |
35.91 |
69.36 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310139 |
rs10733031 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.8 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310145 |
rs10733032 |
C |
T |
. |
PASS |
0.7095000 |
0.9366000 |
0.7550000 |
0.9672000 |
0.9448000 |
0.8478000 |
37.0 |
64.06 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310262 |
rs10733033 |
G |
C |
. |
PASS |
0.7958000 |
0.9539000 |
0.7550000 |
0.9920000 |
0.9519000 |
0.8794000 |
36.8 |
63.43 |
122 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310411 |
rs28468423 |
A |
G |
. |
PASS |
0.7057000 |
0.8689000 |
0.7520000 |
0.8748000 |
0.9131000 |
0.8121000 |
35.11 |
60.0 |
19 |
722.12 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310413 |
rs7549398 |
A |
G |
. |
PASS |
0.5030000 |
0.8329000 |
0.7252000 |
0.8390000 |
0.9049000 |
0.7394000 |
36.37 |
60.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310662 |
rs6426735 |
G |
T |
. |
PASS |
0.7095000 |
0.9251000 |
0.7540000 |
0.9423000 |
0.9417000 |
0.8405000 |
35.0 |
69.94 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310674 |
rs7538207 |
C |
T |
. |
PASS |
0.7095000 |
0.9366000 |
0.7550000 |
0.9722000 |
0.9468000 |
0.8492000 |
36.26 |
69.95 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310725 |
rs3820287 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.11 |
69.72 |
121 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310824 |
rs1803531 |
T |
C |
. |
PASS |
0.8434000 |
0.9625000 |
0.7550000 |
0.9920000 |
0.9519000 |
0.8932000 |
36.79 |
66.1 |
168 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22310933 |
rs12130164 |
C |
G |
. |
PASS |
0.6732000 |
0.9193000 |
0.7530000 |
0.9423000 |
0.9407000 |
0.8297000 |
36.54 |
58.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22313161 |
rs1803530 |
T |
C |
. |
PASS |
0.7920000 |
0.9496000 |
0.7629000 |
0.9920000 |
0.9591000 |
0.8808000 |
36.74 |
69.03 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22315662 |
rs12082371 |
C |
T |
. |
PASS |
0.3434000 |
0.3256000 |
0.3304000 |
0.1869000 |
0.1953000 |
0.2780000 |
37.0 |
49.56 |
19 |
286.27 |
0.00 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
22315666 |
rs55665598 |
G |
A |
. |
PASS |
0.0091000 |
0.2896000 |
0.3125000 |
0.1571000 |
0.1902000 |
0.1741000 |
35.91 |
50.82 |
22 |
348.78 |
9.09 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
22315710 |
rs12071902 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.77 |
28 |
426.26 |
1.65 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
22315738 |
rs4655006 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.42 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22328279 |
rs12751986 |
C |
T |
. |
PASS |
0.0212000 |
0.4107000 |
0.3978000 |
0.2107000 |
0.2270000 |
0.2292000 |
36.23 |
69.45 |
109 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22329407 |
rs12756442 |
G |
C |
. |
PASS |
0.1936000 |
0.4611000 |
0.5109000 |
0.2406000 |
0.2883000 |
0.3225000 |
37.0 |
67.27 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22329645 |
rs4543768 |
T |
C |
. |
PASS |
0.7005000 |
0.5605000 |
0.6389000 |
0.3101000 |
0.3753000 |
0.5268000 |
37.0 |
62.71 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22331875 |
rs77134266 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.25 |
38 |
354.39 |
24.56 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
22332008 |
rs56968853 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.65 |
62.92 |
263 |
1000.00 |
4.16 |
23.57 |
0 |
23.57 |
0/1 |
| chr1 |
22334117 |
rs35519693 |
C |
G |
. |
PASS |
0.1051000 |
0.4251000 |
0.4127000 |
0.2376000 |
0.2996000 |
0.2760000 |
37.0 |
59.28 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22334195 |
rs11585960 |
G |
A |
. |
PASS |
0.2625000 |
0.1225000 |
0.0804000 |
0.0954000 |
0.1370000 |
0.1484000 |
37.0 |
44.0 |
12 |
56.72 |
0.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
22336120 |
rs4344303 |
T |
C |
. |
PASS |
0.2398000 |
0.4078000 |
0.4008000 |
0.1879000 |
0.2178000 |
0.2808000 |
36.68 |
69.22 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22336277 |
rs3820285 |
C |
G |
. |
PASS |
0.9047000 |
0.9020000 |
0.7431000 |
0.9771000 |
0.9530000 |
0.8958000 |
36.48 |
69.95 |
142 |
1000.00 |
2.28 |
97.89 |
0 |
97.89 |
1/1 |
| chr1 |
22336305 |
rs9187 |
C |
T |
. |
PASS |
0.2315000 |
0.4107000 |
0.4018000 |
0.2207000 |
0.2219000 |
0.2865000 |
36.62 |
69.78 |
131 |
1000.00 |
3.46 |
96.95 |
0 |
96.95 |
1/1 |
| chr1 |
22336308 |
rs12908 |
G |
A |
. |
PASS |
0.2307000 |
0.4078000 |
0.3998000 |
0.2207000 |
0.2219000 |
0.2855000 |
36.52 |
69.77 |
131 |
1000.00 |
4.51 |
94.66 |
0 |
94.66 |
1/1 |
| chr1 |
22447645 |
rs41420150 |
C |
CTG |
. |
PASS |
0.7897000 |
0.8660000 |
0.9990000 |
0.7624000 |
0.8855000 |
0.8556000 |
36.04 |
70.0 |
55 |
818.65 |
2.91 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
22652501 |
rs10917214 |
A |
G |
. |
PASS |
0.5053000 |
0.4078000 |
0.3611000 |
0.5328000 |
0.6115000 |
0.4890000 |
36.68 |
70.0 |
137 |
1000.00 |
2.78 |
54.01 |
0 |
54.01 |
0/1 |
| chr1 |
22832743 |
rs209732 |
A |
T |
. |
PASS |
0.9357000 |
0.7997000 |
0.8929000 |
0.6272000 |
0.6943000 |
0.7991000 |
37.0 |
70.0 |
39 |
806.71 |
2.90 |
58.97 |
0 |
58.97 |
0/1 |
| chr1 |
22835677 |
rs209729 |
A |
G |
. |
PASS |
0.9395000 |
0.8429000 |
0.8929000 |
0.7167000 |
0.6861000 |
0.8225000 |
36.33 |
70.0 |
69 |
1000.00 |
18.36 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
22837944 |
rs2073168 |
T |
C |
. |
PASS |
0.1710000 |
0.2291000 |
0.4692000 |
0.3996000 |
0.4172000 |
0.3331000 |
37.0 |
70.0 |
14 |
217.78 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
22846709 |
rs209720 |
G |
A |
. |
PASS |
1.0000000 |
0.9971000 |
1.0000000 |
0.9940000 |
1.0000000 |
0.9984000 |
36.53 |
70.0 |
129 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22849003 |
rs998978 |
A |
C |
. |
PASS |
0.1225000 |
0.2219000 |
0.4692000 |
0.3926000 |
0.4182000 |
0.3181000 |
37.0 |
70.0 |
35 |
609.90 |
14.60 |
51.43 |
0 |
51.43 |
0/1 |
| chr1 |
22852715 |
rs881646 |
G |
C |
. |
PASS |
0.1225000 |
0.2205000 |
0.4692000 |
0.3936000 |
0.4182000 |
0.3181000 |
36.08 |
69.23 |
67 |
823.73 |
7.46 |
38.81 |
0 |
38.81 |
0/1 |
| chr1 |
22912865 |
rs537426 |
A |
G |
. |
PASS |
0.6944000 |
0.3790000 |
0.2708000 |
0.3678000 |
0.5501000 |
0.4716000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22913153 |
rs638058 |
T |
C |
. |
PASS |
0.7284000 |
0.3818000 |
0.2937000 |
0.3658000 |
0.5501000 |
0.4852000 |
36.54 |
70.0 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22915753 |
rs606002 |
T |
C |
. |
PASS |
0.7126000 |
0.3761000 |
0.2907000 |
0.3777000 |
0.5491000 |
0.4818000 |
36.46 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22915967 |
rs11584845 |
C |
G |
. |
PASS |
0.0053000 |
0.0375000 |
0.0000000 |
0.0875000 |
0.0378000 |
0.0315000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22920094 |
rs56157621 |
C |
G |
. |
PASS |
0.0098000 |
0.0216000 |
0.0179000 |
0.0408000 |
0.0542000 |
0.0280000 |
36.59 |
70.0 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22922560 |
rs209691 |
G |
A |
. |
PASS |
0.8011000 |
0.5331000 |
0.2887000 |
0.4264000 |
0.6084000 |
0.5479000 |
36.5 |
70.0 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22923732 |
rs68055833 |
CCCAGGCCCAGG |
C |
. |
PASS |
0.0000000 |
0.0216000 |
0.0000000 |
0.0408000 |
0.0429000 |
0.0195690 |
34.79 |
70.0 |
14 |
508.72 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22923785 |
rs11582356 |
G |
A |
. |
PASS |
0.0076000 |
0.0216000 |
0.0000000 |
0.0408000 |
0.0429000 |
0.0216000 |
35.15 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22924124 |
rs61767315 |
G |
A |
. |
PASS |
0.0000000 |
0.0216000 |
0.0000000 |
0.0408000 |
0.0429000 |
0.0195690 |
36.62 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22924364 |
rs72651347 |
G |
A |
. |
PASS |
0.0159000 |
0.0202000 |
0.0179000 |
0.0388000 |
0.0440000 |
0.0270000 |
36.47 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22924418 |
rs12030727 |
T |
C |
. |
PASS |
0.2776000 |
0.1628000 |
0.1200000 |
0.1600000 |
0.2628000 |
0.2035000 |
37.0 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22925292 |
rs664340 |
C |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
24 |
962.86 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22925613 |
rs663002 |
C |
A |
. |
PASS |
0.3154000 |
0.2608000 |
0.2153000 |
0.2416000 |
0.2423000 |
0.2586000 |
36.82 |
70.0 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22927241 |
rs72651352 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
69.68 |
133 |
1000.00 |
1.00 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
22927314 |
rs209702 |
A |
G |
. |
PASS |
0.7625000 |
0.5331000 |
0.3552000 |
0.4264000 |
0.5092000 |
0.5317000 |
36.51 |
69.59 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22927326 |
rs209701 |
T |
G |
. |
PASS |
0.7383000 |
0.4914000 |
0.2708000 |
0.3469000 |
0.3937000 |
0.4641000 |
36.75 |
70.0 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22928265 |
rs209700 |
A |
G |
. |
PASS |
0.9675000 |
0.6268000 |
0.3631000 |
0.4314000 |
0.6401000 |
0.6270000 |
36.0 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22970828 |
rs666656 |
G |
T |
. |
PASS |
0.9614000 |
0.5375000 |
0.6806000 |
0.4672000 |
0.6002000 |
0.6763000 |
35.74 |
67.89 |
19 |
729.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22974297 |
rs9434 |
C |
A |
. |
PASS |
0.8896000 |
0.4957000 |
0.6220000 |
0.3827000 |
0.4202000 |
0.5877000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22985839 |
rs140338008 |
AGATG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
259.02 |
4.04 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
22987958 |
rs10580 |
A |
G |
. |
PASS |
0.9985000 |
0.9870000 |
1.0000000 |
0.9751000 |
0.9928000 |
0.9914000 |
34.6 |
70.0 |
10 |
358.20 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
22989166 |
rs292011 |
T |
C |
. |
PASS |
0.6884000 |
0.5519000 |
0.4514000 |
0.4235000 |
0.4417000 |
0.5204000 |
36.57 |
70.0 |
141 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23208925 |
rs2229872 |
G |
A |
. |
PASS |
0.1989000 |
0.1585000 |
0.4901000 |
0.0755000 |
0.1339000 |
0.2145000 |
36.33 |
69.44 |
74 |
1000.00 |
9.01 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
23219493 |
rs309472 |
T |
C |
. |
PASS |
0.9992000 |
0.9957000 |
1.0000000 |
0.9950000 |
1.0000000 |
0.9982000 |
36.26 |
70.0 |
113 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23223116 |
rs309466 |
C |
T |
. |
PASS |
0.3275000 |
0.5043000 |
0.2520000 |
0.4970000 |
0.3988000 |
0.3848000 |
37.0 |
70.0 |
11 |
143.27 |
0.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
23236826 |
rs309497 |
C |
T |
. |
PASS |
0.7905000 |
0.5346000 |
0.2659000 |
0.5030000 |
0.3875000 |
0.5130000 |
37.0 |
70.0 |
36 |
736.35 |
0.00 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
23281917 |
rs72655581 |
G |
T |
. |
PASS |
0.0000000 |
0.0014000 |
0.0010000 |
0.0020000 |
0.0010000 |
0.0009984 |
36.25 |
70.0 |
58 |
1000.00 |
6.90 |
55.17 |
0 |
55.17 |
0/1 |
| chr1 |
23289568 |
rs10799777 |
T |
C |
. |
PASS |
0.1967000 |
0.4308000 |
0.5188000 |
0.6740000 |
0.4499000 |
0.4393000 |
37.0 |
70.0 |
43 |
673.51 |
12.33 |
46.51 |
0 |
46.51 |
0/1 |
| chr1 |
23310485 |
rs6426779 |
T |
C |
. |
PASS |
0.3086000 |
0.3746000 |
0.5516000 |
0.4920000 |
0.3190000 |
0.4056000 |
36.14 |
70.0 |
72 |
896.36 |
3.97 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
23342193 |
rs10917344 |
C |
G |
. |
PASS |
0.2995000 |
0.3746000 |
0.5516000 |
0.4911000 |
0.3231000 |
0.4038000 |
35.91 |
70.0 |
23 |
341.62 |
25.30 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
23342362 |
rs681648 |
A |
G |
. |
PASS |
0.8079000 |
0.6210000 |
0.8204000 |
0.8241000 |
0.5348000 |
0.7344000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23380198 |
rs579785 |
A |
G |
. |
PASS |
0.8487000 |
0.6254000 |
0.8056000 |
0.8270000 |
0.5665000 |
0.7496000 |
36.71 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23385826 |
rs79588010 |
CTT |
C |
. |
PASS |
0.2890000 |
0.2233000 |
0.2540000 |
0.3340000 |
0.2423000 |
0.2728000 |
37.0 |
70.0 |
12 |
303.94 |
0.00 |
91.67 |
0 |
91.67 |
0/1 |
| chr1 |
23399932 |
rs967605 |
C |
T |
. |
PASS |
0.8177000 |
0.6210000 |
0.8056000 |
0.8270000 |
0.5613000 |
0.7398000 |
36.65 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23418153 |
rs10799790 |
C |
T |
. |
PASS |
0.8404000 |
0.6225000 |
0.8065000 |
0.8270000 |
0.5613000 |
0.7462000 |
36.1 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23419261 |
rs477717 |
G |
A |
. |
PASS |
0.6430000 |
0.5937000 |
0.8065000 |
0.8280000 |
0.5624000 |
0.6905000 |
36.64 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23419374 |
rs3765407 |
G |
T |
. |
PASS |
0.5923000 |
0.5922000 |
0.8065000 |
0.8280000 |
0.5624000 |
0.6769000 |
36.22 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23419383 |
rs477830 |
C |
T |
. |
PASS |
0.6422000 |
0.5937000 |
0.8065000 |
0.8280000 |
0.5624000 |
0.6903000 |
36.25 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23419855 |
rs1983965 |
T |
C |
. |
PASS |
0.8434000 |
0.6225000 |
0.8065000 |
0.8280000 |
0.5624000 |
0.7474000 |
36.47 |
70.0 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23710805 |
rs605468 |
A |
G |
. |
PASS |
0.7587000 |
0.9308000 |
0.9077000 |
0.9145000 |
0.7996000 |
0.8518000 |
37.0 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23713952 |
rs676363 |
T |
G |
. |
PASS |
0.7602000 |
0.9294000 |
0.9077000 |
0.9145000 |
0.7996000 |
0.8520000 |
36.05 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23720260 |
rs2486078 |
T |
G |
. |
PASS |
0.9705000 |
0.8429000 |
0.8571000 |
0.9195000 |
0.8528000 |
0.8968000 |
35.56 |
69.2 |
25 |
968.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23735241 |
rs1198423 |
G |
T |
. |
PASS |
0.7579000 |
0.8674000 |
0.8829000 |
0.8767000 |
0.8620000 |
0.8425000 |
36.31 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23758134 |
rs1198434 |
A |
G |
. |
PASS |
0.8381000 |
0.8818000 |
0.8810000 |
0.8907000 |
0.8773000 |
0.8710000 |
36.25 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23768196 |
rs72661458 |
G |
A |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0060000 |
0.0000000 |
0.0013978 |
36.59 |
70.0 |
105 |
1000.00 |
3.49 |
56.19 |
0 |
56.19 |
0/1 |
| chr1 |
23768790 |
rs72661462 |
G |
T |
. |
PASS |
0.0023000 |
0.0058000 |
0.0000000 |
0.0258000 |
0.0010000 |
0.0067891 |
37.0 |
70.0 |
30 |
624.95 |
8.89 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
23782297 |
rs61778880 |
C |
T |
. |
PASS |
0.0197000 |
0.0865000 |
0.0863000 |
0.1451000 |
0.0879000 |
0.0809000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23885498 |
rs11574 |
T |
C |
. |
PASS |
0.9894000 |
0.7392000 |
0.9692000 |
0.7575000 |
0.9192000 |
0.8904000 |
36.66 |
70.0 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
23885599 |
rs2067053 |
T |
C |
. |
PASS |
0.6566000 |
0.3473000 |
0.3403000 |
0.3370000 |
0.5429000 |
0.4637000 |
36.53 |
70.0 |
103 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24018277 |
rs10917413 |
C |
G |
. |
PASS |
0.9213000 |
0.9957000 |
0.9960000 |
0.9990000 |
0.9959000 |
0.9768000 |
37.0 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24077451 |
rs2235541 |
C |
T |
. |
PASS |
0.0038000 |
0.1095000 |
0.0883000 |
0.0905000 |
0.1462000 |
0.0807000 |
35.76 |
70.0 |
61 |
959.23 |
2.49 |
47.54 |
0 |
47.54 |
0/1 |
| chr1 |
24083649 |
rs2076346 |
T |
C |
. |
PASS |
0.0885000 |
0.2133000 |
0.5169000 |
0.2575000 |
0.4315000 |
0.2929000 |
36.66 |
69.43 |
66 |
1000.00 |
12.99 |
53.03 |
0 |
53.03 |
0/1 |
| chr1 |
24106510 |
rs3831910 |
A |
AT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
70.0 |
20 |
772.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24119627 |
rs2232982 |
C |
T |
. |
PASS |
0.0008000 |
0.0072000 |
0.0000000 |
0.0288000 |
0.0112000 |
0.0091853 |
36.16 |
70.0 |
94 |
1000.00 |
7.77 |
45.74 |
0 |
45.74 |
0/1 |
| chr1 |
24122986 |
rs760941 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
70.0 |
33 |
1000.00 |
5.87 |
96.97 |
0 |
100.00 |
1/1 |
| chr1 |
24134721 |
rs719400 |
T |
C |
. |
PASS |
0.9728000 |
0.8876000 |
0.7817000 |
0.9254000 |
0.8415000 |
0.8874000 |
36.24 |
69.79 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24143932 |
rs2076344 |
A |
G |
. |
PASS |
0.9728000 |
0.8876000 |
0.7817000 |
0.9264000 |
0.8425000 |
0.8878000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24200969 |
rs2229584 |
T |
C |
. |
PASS |
0.7943000 |
0.6383000 |
0.5020000 |
0.5875000 |
0.6973000 |
0.6534000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24200983 |
rs2229583 |
C |
T |
. |
PASS |
0.8230000 |
0.6398000 |
0.5020000 |
0.5885000 |
0.6973000 |
0.6613000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24201094 |
rs2229581 |
G |
C |
. |
PASS |
0.7943000 |
0.6383000 |
0.5020000 |
0.5875000 |
0.6973000 |
0.6534000 |
37.0 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24201109 |
rs2229580 |
C |
T |
. |
PASS |
0.7943000 |
0.6383000 |
0.5020000 |
0.5875000 |
0.6973000 |
0.6534000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24201262 |
rs2502993 |
A |
G |
. |
PASS |
0.7943000 |
0.6383000 |
0.5020000 |
0.5875000 |
0.6973000 |
0.6534000 |
36.62 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24201357 |
rs4649124 |
A |
G |
. |
PASS |
0.7943000 |
0.6383000 |
0.5020000 |
0.5875000 |
0.6973000 |
0.6534000 |
36.59 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24201448 |
rs3003336 |
C |
T |
. |
PASS |
0.7943000 |
0.6383000 |
0.5020000 |
0.5875000 |
0.6973000 |
0.6534000 |
36.31 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24201643 |
rs2501431 |
G |
A |
. |
PASS |
0.7943000 |
0.6383000 |
0.5020000 |
0.5875000 |
0.6973000 |
0.6534000 |
36.3 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24201918 |
rs35761398 |
GTT |
GCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.46 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228108 |
rs4649133 |
G |
A |
. |
PASS |
0.9334000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9812000 |
37.0 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228132 |
rs4649134 |
G |
A |
. |
PASS |
0.9342000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9814000 |
36.25 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228206 |
rs4649135 |
A |
G |
. |
PASS |
0.9440000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9842000 |
36.04 |
70.0 |
25 |
984.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228359 |
rs4649136 |
A |
G |
. |
PASS |
0.9425000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9838000 |
36.38 |
68.87 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228408 |
rs4648921 |
C |
T |
. |
PASS |
0.9440000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9842000 |
37.0 |
69.22 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228419 |
rs4648922 |
T |
C |
. |
PASS |
0.9440000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9842000 |
37.0 |
68.74 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228443 |
rs4648923 |
G |
A |
. |
PASS |
0.9440000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9842000 |
37.0 |
69.54 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228594 |
rs6669546 |
C |
G |
. |
PASS |
0.9334000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9814000 |
36.08 |
70.0 |
13 |
491.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228762 |
rs6662481 |
G |
C |
. |
PASS |
0.9334000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9814000 |
37.0 |
69.69 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24228863 |
rs6662584 |
G |
A |
. |
PASS |
0.9334000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9814000 |
35.67 |
69.78 |
18 |
692.36 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24229032 |
rs6672272 |
C |
A |
. |
PASS |
0.9349000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9818000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24229106 |
rs6677264 |
A |
G |
. |
PASS |
0.9334000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9814000 |
36.75 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24229276 |
rs6680554 |
T |
C |
. |
PASS |
0.6573000 |
0.9582000 |
1.0000000 |
0.9940000 |
1.0000000 |
0.9026000 |
37.0 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24275433 |
rs147135061 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.44 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24288476 |
rs72540327 |
T |
C |
. |
PASS |
0.5764000 |
0.5821000 |
0.4315000 |
0.4254000 |
0.6391000 |
0.5300000 |
36.61 |
68.91 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24288529 |
rs142213874 |
TAAAC |
T |
. |
PASS |
0.6536000 |
0.9135000 |
0.8641000 |
0.9175000 |
0.8947000 |
0.8321000 |
36.32 |
69.03 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24294249 |
rs146630384 |
C |
T |
. |
PASS |
0.9463000 |
0.9885000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9838000 |
36.61 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24334924 |
rs140608278 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
69.92 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24383819 |
rs7540491 |
T |
C |
. |
PASS |
0.5303000 |
0.5663000 |
0.9514000 |
0.7276000 |
0.6984000 |
0.6925000 |
35.5 |
70.0 |
29 |
202.39 |
3.45 |
27.59 |
0 |
27.59 |
0/1 |
| chr1 |
24387822 |
rs7553075 |
T |
A |
. |
PASS |
0.5424000 |
0.1700000 |
0.4058000 |
0.2286000 |
0.4673000 |
0.3856000 |
36.08 |
70.0 |
23 |
425.15 |
7.36 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
24388371 |
rs4649168 |
T |
C |
. |
PASS |
0.9334000 |
0.9366000 |
0.9940000 |
0.9443000 |
0.9315000 |
0.9479000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24388417 |
rs11811060 |
A |
G |
. |
PASS |
0.2027000 |
0.1282000 |
0.4058000 |
0.2038000 |
0.3865000 |
0.2694000 |
36.31 |
70.0 |
84 |
1000.00 |
5.71 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
24388679 |
rs3795303 |
T |
C |
. |
PASS |
0.4561000 |
0.1455000 |
0.3899000 |
0.2038000 |
0.3906000 |
0.3363000 |
37.0 |
70.0 |
15 |
423.63 |
3.33 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
24389510 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
53.18 |
0.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
24392600 |
rs6682222 |
G |
A |
. |
PASS |
0.4841000 |
0.1599000 |
0.1964000 |
0.1421000 |
0.3149000 |
0.2796000 |
37.0 |
70.0 |
11 |
226.82 |
20.78 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
24393563 |
rs16829071 |
C |
T |
. |
PASS |
0.4871000 |
0.1599000 |
0.1964000 |
0.1421000 |
0.3149000 |
0.2804000 |
37.0 |
70.0 |
67 |
1000.00 |
8.58 |
71.64 |
0 |
71.64 |
0/1 |
| chr1 |
24394424 |
rs7542151 |
G |
A |
. |
PASS |
0.4818000 |
0.1599000 |
0.1964000 |
0.1421000 |
0.3149000 |
0.2790000 |
37.0 |
70.0 |
43 |
506.43 |
2.33 |
37.21 |
0 |
37.21 |
0/1 |
| chr1 |
24394673 |
rs12125641 |
C |
T |
. |
PASS |
0.2700000 |
0.1470000 |
0.1964000 |
0.1402000 |
0.3139000 |
0.2206000 |
33.73 |
70.0 |
26 |
285.97 |
15.38 |
38.46 |
0 |
42.31 |
0/1 |
| chr1 |
24394811 |
rs12145360 |
A |
G |
. |
PASS |
0.2262000 |
0.1427000 |
0.1964000 |
0.1372000 |
0.2536000 |
0.1961000 |
36.66 |
70.0 |
54 |
1000.00 |
0.53 |
64.81 |
0 |
64.81 |
0/1 |
| chr1 |
24400584 |
rs6660949 |
G |
C |
. |
PASS |
0.9349000 |
0.9813000 |
0.9921000 |
0.9980000 |
0.9438000 |
0.9673000 |
36.16 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24400633 |
rs10903083 |
C |
G |
. |
PASS |
0.9349000 |
0.9813000 |
0.9921000 |
0.9980000 |
0.9438000 |
0.9673000 |
36.6 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24409165 |
rs4320728 |
C |
T |
. |
PASS |
0.1929000 |
0.1398000 |
0.1925000 |
0.1332000 |
0.2495000 |
0.1845000 |
37.0 |
70.0 |
93 |
1000.00 |
10.75 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
24416059 |
rs4393101 |
T |
C |
. |
PASS |
0.9289000 |
0.9841000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9788000 |
36.57 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24416133 |
rs4276859 |
C |
T |
. |
PASS |
0.1876000 |
0.1254000 |
0.1845000 |
0.1143000 |
0.2403000 |
0.1739000 |
36.57 |
70.0 |
50 |
974.59 |
4.57 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
24416628 |
rs72648548 |
T |
C |
. |
PASS |
0.0038000 |
0.1110000 |
0.0377000 |
0.0646000 |
0.1656000 |
0.0693000 |
34.33 |
67.78 |
17 |
268.28 |
3.92 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
24434595 |
rs11249170 |
T |
C |
. |
PASS |
0.7784000 |
0.5778000 |
0.6984000 |
0.6153000 |
0.7832000 |
0.7027000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24447943 |
rs34967816 |
G |
A |
. |
PASS |
0.2186000 |
0.0620000 |
0.0030000 |
0.0974000 |
0.1575000 |
0.1172000 |
37.0 |
70.0 |
115 |
1000.00 |
2.43 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
24448371 |
rs4442319 |
T |
C |
. |
PASS |
0.7216000 |
0.7392000 |
0.7421000 |
0.6491000 |
0.8139000 |
0.7316000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24449684 |
rs12070496 |
C |
G |
. |
PASS |
0.1929000 |
0.0346000 |
0.0188000 |
0.0308000 |
0.0348000 |
0.0725000 |
37.0 |
70.0 |
12 |
177.88 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
24454688 |
rs16829204 |
C |
T |
. |
PASS |
0.2390000 |
0.1513000 |
0.0020000 |
0.1680000 |
0.1759000 |
0.1526000 |
37.0 |
70.0 |
96 |
1000.00 |
1.19 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
24460797 |
rs17852649 |
T |
G |
. |
PASS |
0.6989000 |
0.4625000 |
0.2956000 |
0.6123000 |
0.4734000 |
0.5236000 |
37.0 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24463563 |
rs4486393 |
C |
T |
. |
PASS |
0.3003000 |
0.1585000 |
0.0040000 |
0.2157000 |
0.2188000 |
0.1881000 |
36.5 |
70.0 |
54 |
795.47 |
17.59 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
24463854 |
rs41268137 |
C |
T |
. |
PASS |
0.1770000 |
0.1023000 |
0.0010000 |
0.1382000 |
0.1104000 |
0.1104000 |
36.08 |
70.0 |
29 |
411.25 |
7.96 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
24484108 |
rs72648587 |
G |
A |
. |
PASS |
0.0613000 |
0.0418000 |
0.0020000 |
0.0805000 |
0.0368000 |
0.0457000 |
37.0 |
70.0 |
74 |
1000.00 |
7.97 |
52.70 |
0 |
52.70 |
0/1 |
| chr1 |
24484441 |
rs946671 |
A |
G |
. |
PASS |
0.9894000 |
0.9986000 |
1.0000000 |
0.9950000 |
1.0000000 |
0.9960000 |
37.0 |
68.82 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24485518 |
rs10751769 |
T |
C |
. |
PASS |
0.9894000 |
0.9986000 |
1.0000000 |
0.9950000 |
0.9990000 |
0.9958000 |
36.78 |
69.63 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24485941 |
rs4649195 |
T |
C |
. |
PASS |
0.4546000 |
0.6427000 |
0.5069000 |
0.7157000 |
0.7086000 |
0.5933000 |
37.0 |
70.0 |
54 |
1000.00 |
6.75 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
24495839 |
rs72648600 |
T |
C |
. |
PASS |
0.0628000 |
0.0072000 |
0.0248000 |
0.0179000 |
0.0020000 |
0.0266000 |
36.59 |
70.0 |
56 |
998.30 |
8.25 |
51.79 |
0 |
51.79 |
0/1 |
| chr1 |
24496085 |
rs34654982 |
G |
A |
. |
PASS |
0.2890000 |
0.0432000 |
0.0327000 |
0.0417000 |
0.0971000 |
0.1162000 |
36.48 |
70.0 |
111 |
1000.00 |
7.91 |
41.44 |
0 |
41.44 |
0/1 |
| chr1 |
24513608 |
rs12094257 |
C |
T |
. |
PASS |
0.2103000 |
0.2349000 |
0.0060000 |
0.4533000 |
0.3129000 |
0.2414000 |
36.14 |
70.0 |
35 |
434.95 |
11.43 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
24513768 |
rs4090311 |
G |
A |
. |
PASS |
0.9402000 |
0.8559000 |
0.6379000 |
0.8539000 |
0.8793000 |
0.8385000 |
35.96 |
69.13 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24635170 |
rs6671571 |
A |
G |
. |
PASS |
0.5847000 |
0.6499000 |
0.5615000 |
0.5328000 |
0.5297000 |
0.5679000 |
36.51 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24657860 |
rs2486669 |
A |
G |
. |
PASS |
0.3434000 |
0.1455000 |
0.1925000 |
0.1610000 |
0.1452000 |
0.2103000 |
37.0 |
70.0 |
18 |
331.05 |
26.67 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
24658063 |
rs2486668 |
C |
G |
. |
PASS |
0.2277000 |
0.1311000 |
0.1944000 |
0.1640000 |
0.1442000 |
0.1785000 |
37.0 |
70.0 |
79 |
1000.00 |
2.30 |
54.43 |
0 |
54.43 |
0/1 |
| chr1 |
24662903 |
rs12062028 |
G |
C |
. |
PASS |
0.2224000 |
0.0807000 |
0.0000000 |
0.0915000 |
0.0297000 |
0.0940000 |
37.0 |
70.0 |
27 |
466.89 |
12.70 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
24668667 |
rs11576645 |
C |
G |
. |
PASS |
0.0772000 |
0.1527000 |
0.1230000 |
0.2068000 |
0.2556000 |
0.1577000 |
37.0 |
69.57 |
93 |
1000.00 |
0.92 |
50.54 |
0 |
50.54 |
0/1 |
| chr1 |
24668842 |
rs4648974 |
T |
C |
. |
PASS |
0.0946000 |
0.3588000 |
0.4593000 |
0.2972000 |
0.2485000 |
0.2754000 |
37.0 |
70.0 |
24 |
104.14 |
5.00 |
20.83 |
0 |
20.83 |
0/1 |
| chr1 |
24671464 |
. |
ACCCTCCACACCTGTGCC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
48 |
1000.00 |
0.00 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
24680915 |
rs12030057 |
C |
T |
. |
PASS |
0.0703000 |
0.3818000 |
0.4127000 |
0.2982000 |
0.2843000 |
0.2700000 |
36.23 |
70.0 |
134 |
1000.00 |
3.23 |
46.27 |
0 |
46.27 |
0/1 |
| chr1 |
24690764 |
rs545809 |
T |
A |
. |
PASS |
0.2247000 |
0.2305000 |
0.4127000 |
0.2734000 |
0.3569000 |
0.2989000 |
35.57 |
70.0 |
83 |
1000.00 |
1.09 |
50.60 |
0 |
50.60 |
0/1 |
| chr1 |
24706329 |
rs41307808 |
C |
A |
. |
PASS |
0.1619000 |
0.0432000 |
0.0000000 |
0.0517000 |
0.1125000 |
0.0811000 |
37.0 |
70.0 |
81 |
1000.00 |
9.88 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
24768616 |
rs72652567 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.5 |
70.0 |
89 |
1000.00 |
10.11 |
53.93 |
0 |
53.93 |
0/1 |
| chr1 |
24927561 |
rs4553122 |
T |
C |
. |
PASS |
0.5113000 |
0.5245000 |
0.5863000 |
0.5586000 |
0.5838000 |
0.5519000 |
36.68 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24927625 |
rs4378146 |
C |
A |
. |
PASS |
0.2209000 |
0.1441000 |
0.1696000 |
0.2416000 |
0.1718000 |
0.1945000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24932942 |
rs9661044 |
T |
C |
. |
PASS |
0.5454000 |
0.5288000 |
0.5863000 |
0.5636000 |
0.5859000 |
0.5629000 |
36.59 |
69.83 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
24989762 |
rs4649011 |
G |
T |
. |
PASS |
0.9970000 |
0.9827000 |
1.0000000 |
0.9742000 |
0.9939000 |
0.9904000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25140825 |
rs3890756 |
A |
G |
. |
PASS |
0.3843000 |
0.2723000 |
0.4841000 |
0.2982000 |
0.4560000 |
0.3856000 |
37.0 |
70.0 |
16 |
128.22 |
0.00 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
25153692 |
rs4649022 |
G |
A |
. |
PASS |
0.9145000 |
0.9885000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9756000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25256444 |
rs71514255 |
G |
A |
. |
PASS |
0.1747000 |
0.5476000 |
0.5585000 |
0.5746000 |
0.6074000 |
0.4685000 |
34.6 |
68.0 |
10 |
358.20 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25508271 |
rs6600268 |
C |
T |
. |
PASS |
0.4637000 |
0.6484000 |
0.4315000 |
0.6173000 |
0.3998000 |
0.5012000 |
35.36 |
70.0 |
22 |
847.43 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25554719 |
rs35324907 |
G |
A |
. |
PASS |
0.0008000 |
0.0476000 |
0.0000000 |
0.0258000 |
0.0082000 |
0.0135780 |
37.0 |
70.0 |
37 |
649.80 |
19.06 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
25611035 |
rs2301153 |
G |
C |
. |
PASS |
0.1543000 |
0.6700000 |
0.8036000 |
0.7644000 |
0.8885000 |
0.6224000 |
37.0 |
68.83 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25617399 |
rs28521909 |
T |
C |
. |
PASS |
0.6339000 |
0.8444000 |
0.9871000 |
0.7485000 |
0.8834000 |
0.8059000 |
35.8 |
68.8 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25617406 |
rs28562109 |
G |
A |
. |
PASS |
0.6271000 |
0.8401000 |
0.9831000 |
0.7455000 |
0.8824000 |
0.8019000 |
37.0 |
68.8 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25634143 |
rs2427766 |
T |
C |
. |
PASS |
0.0030000 |
0.0490000 |
0.2619000 |
0.1491000 |
0.2321000 |
0.1356000 |
37.0 |
65.9 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25678238 |
rs3093616 |
T |
A |
. |
PASS |
0.7632000 |
0.9726000 |
1.0000000 |
0.9960000 |
0.9990000 |
0.9327000 |
36.67 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25684019 |
. |
A |
AGTGTGTGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
10 |
128.69 |
40.00 |
20.00 |
0 |
50.00 |
0/1 |
| chr1 |
25717139 |
rs636889 |
C |
T |
. |
PASS |
0.5991000 |
0.4784000 |
0.2361000 |
0.5527000 |
0.3139000 |
0.4443000 |
36.72 |
67.21 |
69 |
1000.00 |
7.35 |
62.32 |
0 |
62.32 |
0/1 |
| chr1 |
25747399 |
rs2072931 |
G |
T |
. |
PASS |
0.1846000 |
0.4193000 |
0.2262000 |
0.5408000 |
0.3200000 |
0.3235000 |
34.0 |
53.5 |
12 |
82.33 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
25780889 |
rs141203814 |
A |
ATG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
70.0 |
50 |
647.60 |
1.71 |
42.00 |
0 |
42.00 |
0/1 |
| chr1 |
25780893 |
rs61775167 |
A |
G |
. |
PASS |
0.1838000 |
0.5115000 |
0.7728000 |
0.4533000 |
0.6779000 |
0.4984000 |
37.0 |
70.0 |
46 |
876.35 |
3.30 |
54.35 |
0 |
56.52 |
0/1 |
| chr1 |
25785451 |
rs35530120 |
A |
G |
. |
PASS |
0.1800000 |
0.5115000 |
0.7728000 |
0.4523000 |
0.6779000 |
0.4972000 |
37.0 |
70.0 |
19 |
369.82 |
8.61 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
25893241 |
rs35137241 |
ATG |
ACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
12 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
25993449 |
rs11290438 |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
70.0 |
107 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26085048 |
rs11321223 |
AG |
A |
. |
PASS |
0.9660000 |
0.8890000 |
0.9901000 |
0.8161000 |
0.8630000 |
0.9099000 |
35.0 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26098107 |
rs2072747 |
G |
A |
. |
PASS |
0.3759000 |
0.5735000 |
0.7440000 |
0.6571000 |
0.7096000 |
0.5990000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26098333 |
rs807264 |
G |
A |
. |
PASS |
0.8707000 |
0.8818000 |
0.9901000 |
0.8181000 |
0.8661000 |
0.8848000 |
36.05 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26107321 |
rs807274 |
A |
C |
. |
PASS |
0.9660000 |
0.8862000 |
0.9901000 |
0.8121000 |
0.8630000 |
0.9087000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26107688 |
rs807273 |
C |
A |
. |
PASS |
0.8321000 |
0.8689000 |
0.9901000 |
0.8091000 |
0.8640000 |
0.8706000 |
36.35 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26109237 |
rs12567324 |
A |
G |
. |
PASS |
0.5151000 |
0.5865000 |
0.7302000 |
0.6412000 |
0.7198000 |
0.6336000 |
36.08 |
69.62 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26109307 |
rs2072746 |
G |
C |
. |
PASS |
0.5151000 |
0.5865000 |
0.7312000 |
0.6412000 |
0.7198000 |
0.6338000 |
34.6 |
70.0 |
10 |
354.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26110065 |
rs3820514 |
A |
G |
. |
PASS |
0.3306000 |
0.5648000 |
0.7312000 |
0.6431000 |
0.7219000 |
0.5829000 |
35.0 |
70.0 |
12 |
441.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26110143 |
rs3767877 |
G |
A |
. |
PASS |
0.5477000 |
0.5865000 |
0.7272000 |
0.6431000 |
0.7209000 |
0.6422000 |
35.64 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26127425 |
rs6659086 |
G |
A |
. |
PASS |
0.7927000 |
0.7233000 |
0.6448000 |
0.5258000 |
0.7403000 |
0.6895000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26131654 |
rs7349185 |
G |
A |
. |
PASS |
0.7451000 |
0.8919000 |
0.9395000 |
0.7803000 |
0.8998000 |
0.8419000 |
36.72 |
70.0 |
129 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26138136 |
rs760598 |
C |
A |
. |
PASS |
0.4054000 |
0.8343000 |
0.9683000 |
0.7664000 |
0.8988000 |
0.7470000 |
36.36 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26138262 |
rs760597 |
T |
C |
. |
PASS |
0.5575000 |
0.8516000 |
0.9683000 |
0.7753000 |
0.9018000 |
0.7919000 |
36.47 |
70.0 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26138451 |
rs11247744 |
A |
G |
. |
PASS |
0.5575000 |
0.8516000 |
0.9683000 |
0.7753000 |
0.9018000 |
0.7919000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26139055 |
. |
A |
AACACAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
70.0 |
12 |
264.74 |
21.43 |
58.33 |
0 |
75.00 |
0/1 |
| chr1 |
26139137 |
rs10902685 |
C |
T |
. |
PASS |
0.2126000 |
0.8285000 |
0.9683000 |
0.7753000 |
0.9018000 |
0.6977000 |
35.24 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26139392 |
rs3738451 |
A |
G |
. |
PASS |
0.5711000 |
0.8501000 |
0.9683000 |
0.7753000 |
0.9018000 |
0.7953000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26140573 |
rs2294228 |
C |
A |
. |
PASS |
0.2118000 |
0.8285000 |
0.9683000 |
0.7753000 |
0.9018000 |
0.6975000 |
35.8 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26152758 |
rs6598924 |
A |
G |
. |
PASS |
0.8033000 |
0.8761000 |
0.9782000 |
0.7763000 |
0.9008000 |
0.8622000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26349109 |
rs78022960 |
C |
CT |
. |
PASS |
0.0779000 |
0.1066000 |
0.0605000 |
0.2008000 |
0.0654000 |
0.1006000 |
35.4 |
70.0 |
20 |
410.74 |
6.92 |
65.00 |
0 |
65.00 |
0/1 |
| chr1 |
26357667 |
rs11247848 |
G |
A |
. |
PASS |
0.1513000 |
0.1484000 |
0.1845000 |
0.1859000 |
0.0736000 |
0.1494000 |
36.09 |
70.0 |
116 |
1000.00 |
1.14 |
45.69 |
0 |
45.69 |
0/1 |
| chr1 |
26357855 |
rs2802321 |
A |
G |
. |
PASS |
0.9032000 |
0.9942000 |
1.0000000 |
0.9990000 |
0.9990000 |
0.9732000 |
37.0 |
68.82 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26369297 |
rs2997451 |
T |
C |
. |
PASS |
0.8071000 |
0.9323000 |
0.9345000 |
0.8936000 |
0.8313000 |
0.8722000 |
37.0 |
70.0 |
12 |
223.80 |
4.76 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
26371788 |
rs3121763 |
G |
A |
. |
PASS |
0.6014000 |
0.8948000 |
0.9345000 |
0.8907000 |
0.8303000 |
0.8119000 |
37.0 |
70.0 |
10 |
104.51 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
26384013 |
rs12059101 |
A |
G |
. |
PASS |
0.1248000 |
0.1052000 |
0.0556000 |
0.2157000 |
0.0787000 |
0.1174000 |
37.0 |
70.0 |
35 |
781.13 |
3.90 |
62.86 |
0 |
62.86 |
0/1 |
| chr1 |
26385003 |
rs2275950 |
T |
C |
. |
PASS |
0.2670000 |
0.1239000 |
0.1706000 |
0.2187000 |
0.0838000 |
0.1823000 |
36.14 |
70.0 |
56 |
944.52 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
26385150 |
rs2275949 |
G |
C |
. |
PASS |
0.1747000 |
0.1138000 |
0.1706000 |
0.2187000 |
0.0849000 |
0.1567000 |
35.29 |
70.0 |
15 |
198.62 |
5.71 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
26487940 |
rs3748856 |
A |
G |
. |
PASS |
0.0401000 |
0.2305000 |
0.2718000 |
0.3250000 |
0.1288000 |
0.1877000 |
37.0 |
70.0 |
56 |
1000.00 |
5.36 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
26488019 |
rs3748857 |
G |
A |
. |
PASS |
0.0076000 |
0.3890000 |
0.5794000 |
0.1133000 |
0.4448000 |
0.2821000 |
36.11 |
70.0 |
62 |
884.69 |
2.75 |
43.55 |
0 |
43.55 |
0/1 |
| chr1 |
26494886 |
rs3762459 |
C |
G |
. |
PASS |
0.4841000 |
0.5346000 |
0.6468000 |
0.3121000 |
0.5266000 |
0.4976000 |
36.31 |
70.0 |
176 |
1000.00 |
2.27 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
26496455 |
rs2232648 |
C |
T |
. |
PASS |
0.0401000 |
0.2147000 |
0.2659000 |
0.3191000 |
0.1258000 |
0.1825000 |
36.59 |
70.0 |
62 |
980.24 |
2.11 |
46.77 |
0 |
46.77 |
0/1 |
| chr1 |
26496651 |
rs7087 |
T |
C |
. |
PASS |
0.6301000 |
0.5504000 |
0.6429000 |
0.2992000 |
0.5256000 |
0.5347000 |
36.08 |
70.0 |
105 |
1000.00 |
6.96 |
49.52 |
0 |
49.52 |
0/1 |
| chr1 |
26496870 |
rs2232654 |
A |
G |
. |
PASS |
0.3480000 |
0.5259000 |
0.6429000 |
0.3161000 |
0.5286000 |
0.4609000 |
37.0 |
70.0 |
22 |
402.56 |
7.58 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
26497340 |
rs8768 |
A |
C |
. |
PASS |
0.7549000 |
0.8559000 |
0.9712000 |
0.7684000 |
0.8865000 |
0.8409000 |
35.91 |
70.0 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26504196 |
rs2783707 |
C |
G |
. |
PASS |
0.6309000 |
0.5504000 |
0.6419000 |
0.3002000 |
0.5276000 |
0.5353000 |
37.0 |
70.0 |
18 |
410.44 |
22.22 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
26508293 |
rs3819033 |
G |
A |
. |
PASS |
0.0053000 |
0.4063000 |
0.5933000 |
0.1004000 |
0.4540000 |
0.2859000 |
37.0 |
70.0 |
27 |
220.43 |
13.89 |
29.63 |
0 |
29.63 |
0/1 |
| chr1 |
26508480 |
rs2275945 |
T |
C |
. |
PASS |
0.1573000 |
0.4193000 |
0.6329000 |
0.1014000 |
0.4560000 |
0.3365000 |
36.25 |
70.0 |
32 |
527.53 |
6.25 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
26511700 |
rs2783680 |
A |
G |
. |
PASS |
0.4713000 |
0.7767000 |
0.9702000 |
0.5964000 |
0.8384000 |
0.7109000 |
36.36 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26515529 |
rs11278474,rs59607766,rs141225811,rs72500733 |
ACCAGACT |
A |
. |
PASS |
0.8094000 |
0.9798000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9467000 |
35.94 |
70.0 |
17 |
605.27 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26524706 |
rs9970046 |
A |
G |
. |
PASS |
0.8154000 |
0.6628000 |
0.4216000 |
0.9006000 |
0.5102000 |
0.6725000 |
37.0 |
70.0 |
57 |
965.53 |
12.41 |
49.12 |
0 |
49.12 |
0/1 |
| chr1 |
26527783 |
rs6703730 |
G |
A |
. |
PASS |
0.0287000 |
0.2118000 |
0.2123000 |
0.3310000 |
0.1186000 |
0.1693000 |
37.0 |
70.0 |
25 |
685.92 |
6.74 |
76.00 |
0 |
76.00 |
0/1 |
| chr1 |
26529121 |
rs6691747 |
G |
C |
. |
PASS |
0.3396000 |
0.5216000 |
0.4008000 |
0.6093000 |
0.3865000 |
0.4405000 |
36.14 |
70.0 |
22 |
469.94 |
6.49 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
26545946 |
rs6697521 |
A |
C |
. |
PASS |
0.8805000 |
0.6916000 |
0.4573000 |
0.9264000 |
0.6063000 |
0.7248000 |
36.29 |
69.47 |
73 |
1000.00 |
10.80 |
46.58 |
0 |
46.58 |
0/1 |
| chr1 |
26582091 |
rs3795686 |
G |
A |
. |
PASS |
0.0575000 |
0.2363000 |
0.2599000 |
0.3022000 |
0.1299000 |
0.1863000 |
35.29 |
70.0 |
70 |
878.38 |
2.86 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
26597435 |
rs4659419 |
G |
A |
. |
PASS |
0.8812000 |
0.6960000 |
0.4583000 |
0.9304000 |
0.6053000 |
0.7264000 |
37.0 |
70.0 |
26 |
432.29 |
7.69 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
26597673 |
rs11247894 |
G |
A |
. |
PASS |
0.6165000 |
0.5245000 |
0.4077000 |
0.6004000 |
0.4499000 |
0.5260000 |
36.05 |
70.0 |
75 |
1000.00 |
4.14 |
50.67 |
0 |
50.67 |
0/1 |
| chr1 |
26601385 |
rs3795685 |
G |
A |
. |
PASS |
0.3374000 |
0.4049000 |
0.3095000 |
0.6322000 |
0.2853000 |
0.3902000 |
37.0 |
70.0 |
12 |
98.49 |
16.67 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
26601570 |
rs11577318 |
A |
G |
. |
PASS |
0.2027000 |
0.1124000 |
0.0228000 |
0.2068000 |
0.1074000 |
0.1362000 |
36.38 |
70.0 |
70 |
1000.00 |
4.84 |
55.71 |
0 |
55.71 |
0/1 |
| chr1 |
26607123 |
rs12759434 |
C |
T |
. |
PASS |
0.3525000 |
0.4020000 |
0.3085000 |
0.6282000 |
0.2853000 |
0.3928000 |
35.29 |
70.0 |
11 |
214.80 |
0.00 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
26608649 |
rs12750420 |
G |
A |
. |
PASS |
0.0605000 |
0.2334000 |
0.2609000 |
0.3032000 |
0.1299000 |
0.1871000 |
37.0 |
70.0 |
23 |
148.93 |
0.00 |
26.09 |
0 |
26.09 |
0/1 |
| chr1 |
26608782 |
rs34209692 |
C |
T |
. |
PASS |
0.0582000 |
0.2349000 |
0.2599000 |
0.3022000 |
0.1299000 |
0.1863000 |
34.33 |
70.0 |
131 |
1000.00 |
5.60 |
34.35 |
0 |
34.35 |
0/1 |
| chr1 |
26608814 |
rs6672357 |
A |
G |
. |
PASS |
0.8865000 |
0.7219000 |
0.5169000 |
0.9324000 |
0.6380000 |
0.7500000 |
36.14 |
70.0 |
167 |
1000.00 |
9.14 |
25.75 |
0 |
33.53 |
0/1 |
| chr1 |
26608819 |
rs66614970 |
AGGGACTGGGGCCGGGACCGGGACC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.41 |
69.9 |
207 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26608852 |
rs61775089 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.78 |
70.0 |
203 |
1000.00 |
41.86 |
23.15 |
0 |
29.06 |
0/1 |
| chr1 |
26609259 |
rs7522905 |
C |
T |
. |
PASS |
0.3245000 |
0.3948000 |
0.3095000 |
0.6282000 |
0.2853000 |
0.3846000 |
36.68 |
69.47 |
167 |
1000.00 |
3.69 |
45.51 |
0 |
45.51 |
0/1 |
| chr1 |
26609307 |
rs6598952 |
G |
T |
. |
PASS |
0.8812000 |
0.6945000 |
0.4583000 |
0.9304000 |
0.6053000 |
0.7262000 |
36.74 |
69.57 |
124 |
1000.00 |
1.82 |
37.90 |
0 |
37.90 |
0/1 |
| chr1 |
26610891 |
rs4332350 |
A |
C |
. |
PASS |
0.8828000 |
0.6945000 |
0.4603000 |
0.9304000 |
0.6053000 |
0.7270000 |
36.75 |
69.79 |
170 |
1000.00 |
4.07 |
56.47 |
0 |
56.47 |
0/1 |
| chr1 |
26612042 |
rs11247898 |
A |
G |
. |
PASS |
0.8820000 |
0.6945000 |
0.4583000 |
0.9304000 |
0.5869000 |
0.7228000 |
36.45 |
70.0 |
84 |
1000.00 |
3.03 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
26620846 |
rs3832184 |
C |
CA |
. |
PASS |
0.8752000 |
0.6902000 |
0.4583000 |
0.9264000 |
0.5859000 |
0.7194000 |
36.8 |
70.0 |
113 |
1000.00 |
5.70 |
47.79 |
0 |
47.79 |
0/1 |
| chr1 |
26627478 |
rs2276712 |
T |
C |
. |
PASS |
0.5885000 |
0.5735000 |
0.4385000 |
0.7356000 |
0.4939000 |
0.5673000 |
37.0 |
70.0 |
76 |
1000.00 |
10.23 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
26646726 |
rs1071849 |
A |
G |
. |
PASS |
0.6301000 |
0.5807000 |
0.4415000 |
0.7356000 |
0.4980000 |
0.5807000 |
36.79 |
69.66 |
140 |
1000.00 |
3.45 |
41.43 |
0 |
41.43 |
0/1 |
| chr1 |
26646730 |
rs17645 |
A |
G |
. |
PASS |
0.6301000 |
0.5807000 |
0.4415000 |
0.7356000 |
0.4980000 |
0.5807000 |
36.58 |
69.65 |
137 |
1000.00 |
4.53 |
41.61 |
0 |
41.61 |
0/1 |
| chr1 |
26648328 |
rs12568163 |
G |
A |
. |
PASS |
0.1180000 |
0.3069000 |
0.5367000 |
0.0736000 |
0.4100000 |
0.2766000 |
37.0 |
70.0 |
11 |
143.27 |
0.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
26648551 |
rs11247913 |
G |
C |
. |
PASS |
0.5537000 |
0.5749000 |
0.4405000 |
0.7346000 |
0.5000000 |
0.5597000 |
36.33 |
70.0 |
39 |
585.85 |
0.85 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
26662774 |
rs7517559 |
C |
T |
. |
PASS |
0.8200000 |
0.6354000 |
0.4464000 |
0.8330000 |
0.5603000 |
0.6711000 |
36.2 |
70.0 |
71 |
1000.00 |
0.81 |
63.38 |
0 |
63.38 |
0/1 |
| chr1 |
26662904 |
rs72649360 |
C |
T |
. |
PASS |
0.1331000 |
0.2507000 |
0.2639000 |
0.3022000 |
0.1360000 |
0.2103000 |
37.0 |
70.0 |
62 |
1000.00 |
0.40 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
26664219 |
rs4072445 |
T |
C |
. |
PASS |
0.1377000 |
0.2493000 |
0.2659000 |
0.2972000 |
0.1452000 |
0.2125000 |
36.47 |
70.0 |
61 |
1000.00 |
2.19 |
73.77 |
0 |
73.77 |
0/1 |
| chr1 |
26670401 |
rs41285435 |
G |
A |
. |
PASS |
0.0000000 |
0.0072000 |
0.0000000 |
0.0169000 |
0.0072000 |
0.0057907 |
37.0 |
70.0 |
82 |
1000.00 |
2.66 |
54.88 |
0 |
54.88 |
0/1 |
| chr1 |
26670444 |
rs36024412 |
G |
T |
. |
PASS |
0.1150000 |
0.2478000 |
0.2669000 |
0.2962000 |
0.1462000 |
0.2065000 |
37.0 |
70.0 |
116 |
1000.00 |
1.57 |
37.93 |
0 |
37.93 |
0/1 |
| chr1 |
26670609 |
rs34370465 |
C |
T |
. |
PASS |
0.1142000 |
0.2478000 |
0.2659000 |
0.2913000 |
0.1452000 |
0.2049000 |
37.0 |
70.0 |
36 |
569.27 |
0.33 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
26670650 |
rs199784730 |
T |
TTCC |
. |
PASS |
0.0000000 |
0.0072000 |
0.0010000 |
0.0139000 |
0.0010000 |
0.0041933 |
35.93 |
69.33 |
58 |
1000.00 |
3.45 |
50.00 |
0 |
51.72 |
0/1 |
| chr1 |
26671522 |
. |
GAA |
GGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.2 |
107 |
102.30 |
17.20 |
9.35 |
0 |
13.08 |
0/1 |
| chr1 |
26671526 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
68.54 |
99 |
84.29 |
14.95 |
10.10 |
0 |
13.13 |
0/1 |
| chr1 |
26671533 |
rs11580306 |
T |
G |
. |
PASS |
0.1604000 |
0.1023000 |
0.0357000 |
0.2674000 |
0.0706000 |
0.1312000 |
36.33 |
67.94 |
107 |
264.93 |
17.20 |
14.02 |
0 |
16.82 |
0/1 |
| chr1 |
26671556 |
rs12119322 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.78 |
67.81 |
129 |
530.76 |
16.47 |
18.60 |
0 |
20.93 |
0/1 |
| chr1 |
26671575 |
rs11579834 |
A |
G |
. |
PASS |
0.5961000 |
0.4712000 |
0.3274000 |
0.7227000 |
0.3691000 |
0.5058000 |
37.0 |
67.81 |
161 |
1000.00 |
3.58 |
26.71 |
0 |
26.71 |
0/1 |
| chr1 |
26671578 |
rs11579835 |
A |
G |
. |
PASS |
0.6006000 |
0.4712000 |
0.3214000 |
0.7207000 |
0.3671000 |
0.5050000 |
36.72 |
67.81 |
168 |
1000.00 |
0.28 |
25.60 |
0 |
25.60 |
0/1 |
| chr1 |
26671625 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.05 |
66.89 |
269 |
709.16 |
7.92 |
14.13 |
0 |
14.13 |
0/1 |
| chr1 |
26671658 |
rs111981367 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.88 |
66.91 |
283 |
863.85 |
4.09 |
15.19 |
0 |
15.19 |
0/1 |
| chr1 |
26671690 |
rs112674559 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
68.78 |
241 |
942.78 |
1.40 |
17.01 |
0 |
17.01 |
0/1 |
| chr1 |
26671719 |
rs201245727 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.96 |
67.22 |
187 |
341.38 |
3.95 |
12.30 |
0 |
12.30 |
0/1 |
| chr1 |
26689659 |
rs11247932 |
G |
A |
. |
PASS |
0.0893000 |
0.4193000 |
0.2778000 |
0.3410000 |
0.2454000 |
0.2540000 |
35.91 |
70.0 |
23 |
345.76 |
2.37 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
26691174 |
rs11247933 |
C |
A |
. |
PASS |
0.1233000 |
0.4193000 |
0.2778000 |
0.3410000 |
0.2474000 |
0.2634000 |
36.68 |
69.73 |
153 |
1000.00 |
3.27 |
48.37 |
0 |
48.37 |
0/1 |
| chr1 |
26694245 |
rs10794531 |
T |
C |
. |
PASS |
0.5862000 |
0.3228000 |
0.6230000 |
0.2863000 |
0.5665000 |
0.4930000 |
36.23 |
70.0 |
80 |
997.60 |
0.08 |
38.75 |
0 |
38.75 |
0/1 |
| chr1 |
26694260 |
rs10794532 |
T |
C |
. |
PASS |
0.2428000 |
0.2536000 |
0.5794000 |
0.1879000 |
0.4663000 |
0.3446000 |
36.62 |
70.0 |
80 |
1000.00 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
26745360 |
rs11389104 |
C |
CA |
. |
PASS |
0.6067000 |
0.6254000 |
0.4038000 |
0.5944000 |
0.5808000 |
0.5609000 |
36.76 |
70.0 |
95 |
1000.00 |
3.27 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
26752992 |
rs4659441 |
T |
C |
. |
PASS |
0.8495000 |
0.8718000 |
0.8631000 |
0.7843000 |
0.8548000 |
0.8433000 |
36.68 |
69.53 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26786627 |
rs3816539 |
G |
A |
. |
PASS |
0.4811000 |
0.3069000 |
0.7093000 |
0.2346000 |
0.4908000 |
0.4553000 |
36.69 |
70.0 |
79 |
1000.00 |
1.17 |
49.37 |
0 |
49.37 |
0/1 |
| chr1 |
26801229 |
rs72651510 |
C |
A |
. |
PASS |
0.0227000 |
0.1268000 |
0.0099000 |
0.2654000 |
0.0358000 |
0.0859000 |
37.0 |
70.0 |
17 |
455.23 |
10.86 |
76.47 |
0 |
76.47 |
0/1 |
| chr1 |
26846195 |
rs4970514 |
C |
T |
. |
PASS |
0.4826000 |
0.3487000 |
0.7123000 |
0.2356000 |
0.4908000 |
0.4623000 |
37.0 |
70.0 |
43 |
631.74 |
6.36 |
44.19 |
0 |
44.19 |
0/1 |
| chr1 |
26856462 |
rs11800553 |
T |
G |
. |
PASS |
0.9259000 |
0.9179000 |
0.9583000 |
0.9553000 |
0.9233000 |
0.9367000 |
36.61 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26869610 |
rs921893 |
G |
A |
. |
PASS |
0.7231000 |
0.6340000 |
0.7887000 |
0.7505000 |
0.7004000 |
0.7250000 |
36.68 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26879792 |
rs4970489 |
T |
C |
. |
PASS |
0.7269000 |
0.6326000 |
0.7847000 |
0.7416000 |
0.6984000 |
0.7228000 |
37.0 |
68.46 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26879920 |
rs4970490 |
T |
C |
. |
PASS |
0.9675000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9912000 |
36.62 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26881565 |
rs67600391 |
AG |
A |
. |
PASS |
0.1815000 |
0.1888000 |
0.0030000 |
0.3032000 |
0.0470000 |
0.1448000 |
34.33 |
70.0 |
12 |
424.17 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
26900735 |
rs282179 |
C |
G |
. |
PASS |
0.7557000 |
0.6974000 |
0.8492000 |
0.7783000 |
0.8323000 |
0.7859000 |
36.3 |
69.71 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27022833 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
12 |
82.34 |
133.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
27022837 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
70.0 |
18 |
71.43 |
144.44 |
22.22 |
0 |
27.78 |
0/1 |
| chr1 |
27210721 |
rs3170660 |
T |
C |
. |
PASS |
0.9781000 |
0.8256000 |
0.9970000 |
0.6292000 |
0.8885000 |
0.8732000 |
36.51 |
69.8 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27278521 |
rs3010110 |
G |
A |
. |
PASS |
0.0144000 |
0.1210000 |
0.0288000 |
0.2604000 |
0.2505000 |
0.1276000 |
37.0 |
70.0 |
50 |
568.91 |
2.22 |
36.00 |
0 |
36.00 |
0/1 |
| chr1 |
27278553 |
rs3010109 |
G |
A |
. |
PASS |
0.0068000 |
0.0850000 |
0.0288000 |
0.1730000 |
0.2035000 |
0.0938000 |
36.62 |
70.0 |
71 |
1000.00 |
0.18 |
45.07 |
0 |
45.07 |
0/1 |
| chr1 |
27289431 |
rs71582824 |
C |
CCACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
195.21 |
14.29 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
27320356 |
rs6689941 |
T |
C |
. |
PASS |
0.9334000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9820000 |
36.54 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27339103 |
rs4970471 |
G |
T |
. |
PASS |
0.0416000 |
0.3833000 |
0.7232000 |
0.1700000 |
0.4714000 |
0.3359000 |
35.77 |
70.0 |
78 |
1000.00 |
7.69 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
27426796 |
rs4266911 |
T |
C |
. |
PASS |
0.9939000 |
0.9784000 |
1.0000000 |
0.9632000 |
0.9969000 |
0.9874000 |
37.0 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27427041 |
rs4418629 |
T |
C |
. |
PASS |
1.0000000 |
0.9798000 |
1.0000000 |
0.9632000 |
0.9969000 |
0.9892000 |
36.55 |
70.0 |
134 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27428321 |
rs6598870 |
T |
C |
. |
PASS |
0.3374000 |
0.1960000 |
0.1151000 |
0.3479000 |
0.3476000 |
0.2772000 |
34.88 |
70.0 |
32 |
545.28 |
6.62 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
27435976 |
rs3738689 |
C |
G |
. |
PASS |
0.1974000 |
0.1758000 |
0.1141000 |
0.3469000 |
0.3456000 |
0.2366000 |
37.0 |
70.0 |
39 |
723.17 |
16.85 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
27480757 |
rs34306208 |
A |
G |
. |
PASS |
0.2534000 |
0.1902000 |
0.1161000 |
0.3320000 |
0.3405000 |
0.2498000 |
36.79 |
70.0 |
115 |
1000.00 |
0.82 |
49.57 |
0 |
49.57 |
0/1 |
| chr1 |
27503450 |
rs34300658 |
T |
TC |
. |
PASS |
0.4970000 |
0.2190000 |
0.1270000 |
0.3161000 |
0.3395000 |
0.3169000 |
37.0 |
69.89 |
20 |
267.68 |
3.33 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
27503662 |
rs12119525 |
T |
A |
. |
PASS |
0.3207000 |
0.1960000 |
0.1151000 |
0.3141000 |
0.3344000 |
0.2634000 |
37.0 |
70.0 |
17 |
246.37 |
20.59 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
27533906 |
rs71582851 |
AGATGAT |
A |
. |
PASS |
0.2897000 |
0.2406000 |
0.1458000 |
0.3698000 |
0.3303000 |
0.2780000 |
34.22 |
69.67 |
26 |
227.61 |
24.79 |
34.62 |
1 |
38.46 |
0/1 |
| chr1 |
27533908 |
. |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.5 |
69.7 |
25 |
275.41 |
12.00 |
40.00 |
1 |
40.00 |
0/1 |
| chr1 |
27609980 |
rs6670124 |
T |
G |
. |
PASS |
0.9221000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9778000 |
36.6 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27676125 |
rs12122380 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0020000 |
0.0007987 |
35.91 |
70.0 |
30 |
772.16 |
0.00 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
27677233 |
rs41291094 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0020000 |
0.0007987 |
37.0 |
70.0 |
33 |
703.61 |
5.15 |
60.61 |
0 |
60.61 |
0/1 |
| chr1 |
27679692 |
rs11247639 |
A |
G |
. |
PASS |
0.3419000 |
0.4294000 |
0.2530000 |
0.6829000 |
0.7362000 |
0.4816000 |
35.5 |
70.0 |
20 |
229.48 |
25.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
27679797 |
rs3813795 |
A |
G |
. |
PASS |
0.3495000 |
0.4294000 |
0.2500000 |
0.6819000 |
0.7331000 |
0.4822000 |
36.79 |
69.64 |
125 |
1000.00 |
7.57 |
44.80 |
0 |
44.80 |
0/1 |
| chr1 |
27680292 |
rs8533 |
A |
G |
. |
PASS |
0.6891000 |
0.4813000 |
0.2431000 |
0.7247000 |
0.5286000 |
0.5463000 |
36.77 |
70.0 |
113 |
1000.00 |
1.80 |
46.02 |
0 |
46.02 |
0/1 |
| chr1 |
27682440 |
rs36035221 |
T |
TG |
. |
PASS |
0.7073000 |
0.2911000 |
0.1032000 |
0.3658000 |
0.1779000 |
0.3560000 |
35.5 |
70.0 |
20 |
213.89 |
15.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
27682481 |
rs12569127 |
G |
A |
. |
PASS |
0.2050000 |
0.2089000 |
0.1022000 |
0.2952000 |
0.1401000 |
0.1903000 |
36.25 |
70.0 |
44 |
491.41 |
1.14 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
27686063 |
rs7521552 |
G |
C |
. |
PASS |
0.9660000 |
0.9870000 |
1.0000000 |
0.9970000 |
0.9969000 |
0.9880000 |
36.5 |
70.0 |
24 |
950.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27687466 |
rs35659744 |
G |
T |
. |
PASS |
0.0182000 |
0.1571000 |
0.0823000 |
0.2684000 |
0.1278000 |
0.1220000 |
36.62 |
70.0 |
71 |
1000.00 |
0.18 |
45.07 |
0 |
45.07 |
0/1 |
| chr1 |
27690297 |
rs4075731 |
G |
T |
. |
PASS |
0.7307000 |
0.2824000 |
0.0992000 |
0.3410000 |
0.1738000 |
0.3544000 |
37.0 |
70.0 |
28 |
380.35 |
30.95 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
27690359 |
rs4307592 |
T |
C |
. |
PASS |
0.3124000 |
0.2248000 |
0.0992000 |
0.2913000 |
0.1411000 |
0.2196000 |
35.98 |
70.0 |
99 |
1000.00 |
0.90 |
47.47 |
0 |
47.47 |
0/1 |
| chr1 |
27690644 |
rs12727507 |
A |
G |
. |
PASS |
0.7307000 |
0.2824000 |
0.1012000 |
0.3410000 |
0.1738000 |
0.3548000 |
36.74 |
70.0 |
77 |
1000.00 |
6.96 |
61.04 |
0 |
61.04 |
0/1 |
| chr1 |
27696011 |
rs10218730 |
C |
T |
. |
PASS |
0.9750000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9924000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27709138 |
rs79961070 |
A |
G |
. |
PASS |
0.0008000 |
0.0043000 |
0.0000000 |
0.0159000 |
0.0051000 |
0.0049920 |
36.43 |
70.0 |
81 |
1000.00 |
7.41 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
27875824 |
rs4908364 |
C |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9911000 |
0.9990000 |
0.9980000 |
36.27 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
27876482 |
rs2076457 |
C |
A |
. |
PASS |
0.9818000 |
0.7406000 |
0.8204000 |
0.6193000 |
0.7249000 |
0.7929000 |
36.23 |
70.0 |
69 |
1000.00 |
11.78 |
44.93 |
0 |
44.93 |
0/1 |
| chr1 |
27878527 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.0 |
70.0 |
49 |
173.56 |
159.18 |
20.41 |
0 |
20.41 |
0/1 |
| chr1 |
27995077 |
rs56015130 |
G |
T |
. |
PASS |
0.3722000 |
0.9150000 |
0.7401000 |
0.9751000 |
0.8937000 |
0.7444000 |
36.29 |
70.0 |
17 |
658.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28086955 |
rs10902671 |
C |
A |
. |
PASS |
0.9977000 |
0.9669000 |
1.0000000 |
0.9314000 |
0.9836000 |
0.9778000 |
36.4 |
70.0 |
20 |
783.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28157446 |
rs41284290 |
T |
G |
. |
PASS |
0.0038000 |
0.1297000 |
0.0020000 |
0.0676000 |
0.0409000 |
0.0409000 |
36.43 |
69.52 |
70 |
1000.00 |
2.86 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
28209305 |
rs3766398 |
A |
G |
. |
PASS |
0.1445000 |
0.5086000 |
0.5099000 |
0.6322000 |
0.6871000 |
0.4724000 |
36.87 |
70.0 |
96 |
1000.00 |
0.18 |
97.92 |
0 |
97.92 |
1/1 |
| chr1 |
28209362 |
rs3766399 |
T |
C |
. |
PASS |
0.1566000 |
0.5086000 |
0.5040000 |
0.6322000 |
0.6871000 |
0.4744000 |
36.44 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28209366 |
rs3766400 |
A |
G |
. |
PASS |
0.0711000 |
0.5029000 |
0.5010000 |
0.6322000 |
0.6871000 |
0.4505000 |
36.59 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28261593 |
rs3737809 |
T |
C |
. |
PASS |
0.2980000 |
0.3588000 |
0.1726000 |
0.4414000 |
0.5511000 |
0.3594000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28261600 |
rs3737808 |
A |
C |
. |
PASS |
0.0166000 |
0.3026000 |
0.1419000 |
0.3708000 |
0.4223000 |
0.2318000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28261658 |
rs3831926 |
T |
TG |
. |
PASS |
0.3215000 |
0.3674000 |
0.1746000 |
0.4453000 |
0.5511000 |
0.3680000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28282819 |
rs4908381 |
T |
C |
. |
PASS |
0.7784000 |
0.9669000 |
1.0000000 |
0.9781000 |
1.0000000 |
0.9325000 |
35.86 |
70.0 |
21 |
817.67 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28290231 |
rs4373781 |
C |
G |
. |
PASS |
0.7262000 |
0.9035000 |
0.7252000 |
0.9503000 |
0.8896000 |
0.8275000 |
36.66 |
69.71 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28292739 |
rs4243820 |
G |
A |
. |
PASS |
0.3570000 |
0.6354000 |
0.5149000 |
0.6272000 |
0.6217000 |
0.5333000 |
36.38 |
69.67 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28293712 |
rs6673064 |
G |
A |
. |
PASS |
0.0144000 |
0.0101000 |
0.0000000 |
0.0060000 |
0.0010000 |
0.0065895 |
36.38 |
69.44 |
73 |
1000.00 |
0.21 |
53.42 |
0 |
53.42 |
0/1 |
| chr1 |
28304785 |
rs72656546 |
T |
C |
. |
PASS |
0.0802000 |
0.0072000 |
0.0000000 |
0.0099000 |
0.0020000 |
0.0246000 |
37.0 |
70.0 |
14 |
217.78 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
28319867 |
rs12140716 |
C |
A |
. |
PASS |
0.0250000 |
0.0029000 |
0.0000000 |
0.0060000 |
0.0010000 |
0.0083866 |
37.0 |
70.0 |
53 |
597.49 |
20.06 |
35.85 |
0 |
35.85 |
0/1 |
| chr1 |
28369213 |
rs111559121 |
TA |
T |
. |
PASS |
0.0620000 |
0.0058000 |
0.0000000 |
0.0099000 |
0.0020000 |
0.0195690 |
36.33 |
70.0 |
18 |
273.72 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
28374815 |
rs7541031 |
C |
T |
. |
PASS |
0.1233000 |
0.2032000 |
0.2579000 |
0.2495000 |
0.2290000 |
0.2075000 |
37.0 |
70.0 |
25 |
393.54 |
4.67 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
28422847 |
rs2989472 |
C |
T |
. |
PASS |
0.7912000 |
0.5807000 |
0.8611000 |
0.6093000 |
0.6759000 |
0.7171000 |
36.59 |
68.85 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
28555426 |
rs567086 |
G |
A |
. |
PASS |
0.6717000 |
0.2882000 |
0.0992000 |
0.3628000 |
0.2219000 |
0.3534000 |
36.68 |
70.0 |
71 |
1000.00 |
6.93 |
52.11 |
0 |
52.11 |
0/1 |
| chr1 |
28562676 |
rs12154 |
A |
G |
. |
PASS |
0.6619000 |
0.2478000 |
0.0992000 |
0.2893000 |
0.2209000 |
0.3303000 |
37.0 |
70.0 |
83 |
1000.00 |
5.27 |
51.81 |
0 |
51.81 |
0/1 |
| chr1 |
28564252 |
rs8559 |
A |
G |
. |
PASS |
0.7421000 |
0.2925000 |
0.0992000 |
0.3688000 |
0.2219000 |
0.3738000 |
37.0 |
70.0 |
16 |
169.99 |
8.33 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
28564279 |
rs9508 |
A |
G |
. |
PASS |
0.6596000 |
0.2478000 |
0.0992000 |
0.2932000 |
0.2209000 |
0.3305000 |
37.0 |
70.0 |
26 |
515.83 |
4.62 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
28598110 |
rs67068635 |
C |
G |
. |
PASS |
0.0446000 |
0.0029000 |
0.0000000 |
0.0050000 |
0.0051000 |
0.0141770 |
37.0 |
70.0 |
26 |
302.82 |
10.77 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
28733993 |
rs12091029 |
G |
T |
. |
PASS |
0.6437000 |
0.3112000 |
0.0704000 |
0.3489000 |
0.1677000 |
0.3301000 |
37.0 |
70.0 |
57 |
877.84 |
3.10 |
45.61 |
0 |
45.61 |
0/1 |
| chr1 |
28800380 |
rs61785974 |
C |
A |
. |
PASS |
0.3048000 |
0.2666000 |
0.0704000 |
0.3111000 |
0.1585000 |
0.2250000 |
36.22 |
69.57 |
87 |
1000.00 |
0.90 |
52.87 |
0 |
52.87 |
0/1 |
| chr1 |
28817597 |
rs10915235 |
A |
G |
. |
PASS |
0.6422000 |
0.3112000 |
0.0704000 |
0.3489000 |
0.1667000 |
0.3295000 |
36.54 |
70.0 |
51 |
888.04 |
20.66 |
50.98 |
0 |
50.98 |
0/1 |
| chr1 |
28853376 |
rs3765641 |
T |
C |
. |
PASS |
0.2602000 |
0.2464000 |
0.0724000 |
0.3062000 |
0.1585000 |
0.2099000 |
37.0 |
70.0 |
12 |
265.57 |
16.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
28861636 |
rs2066726 |
G |
A |
. |
PASS |
0.3101000 |
0.2478000 |
0.0724000 |
0.3072000 |
0.1605000 |
0.2238000 |
37.0 |
70.0 |
81 |
1000.00 |
3.70 |
41.98 |
0 |
41.98 |
0/1 |
| chr1 |
29016717 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
66.67 |
28 |
264.08 |
3.17 |
32.14 |
0 |
42.86 |
0/1 |
| chr1 |
29063559 |
rs6697540 |
A |
C |
. |
PASS |
0.8623000 |
0.9856000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9613000 |
36.66 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
29064941 |
rs72663860 |
A |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0060000 |
0.0072000 |
0.0025959 |
37.0 |
67.14 |
18 |
201.60 |
23.81 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
29138975 |
rs1042114 |
G |
T |
. |
PASS |
0.9796000 |
0.9193000 |
1.0000000 |
0.8678000 |
0.9366000 |
0.9445000 |
36.41 |
69.51 |
71 |
1000.00 |
5.91 |
57.75 |
0 |
57.75 |
0/1 |
| chr1 |
29189597 |
rs2234918 |
C |
T |
. |
PASS |
0.3056000 |
0.7032000 |
0.7540000 |
0.5726000 |
0.6984000 |
0.5813000 |
36.33 |
70.0 |
56 |
538.83 |
14.68 |
32.14 |
0 |
32.14 |
0/1 |
| chr1 |
29345009 |
rs5773229 |
C |
CTT |
. |
PASS |
0.9879000 |
0.9380000 |
0.9256000 |
0.8459000 |
0.9254000 |
0.9277000 |
36.74 |
70.0 |
24 |
951.42 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
29345027 |
rs2985334 |
T |
G |
. |
PASS |
0.8752000 |
0.8415000 |
0.9256000 |
0.7286000 |
0.8773000 |
0.8516000 |
35.0 |
70.0 |
12 |
437.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
29385486 |
rs2153165 |
G |
C |
. |
PASS |
0.6437000 |
0.3401000 |
0.4921000 |
0.2097000 |
0.3180000 |
0.4203000 |
37.0 |
70.0 |
22 |
314.87 |
12.73 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
29391396 |
rs12070152 |
A |
G |
. |
PASS |
0.6437000 |
0.3401000 |
0.4921000 |
0.2087000 |
0.3180000 |
0.4201000 |
35.5 |
70.0 |
13 |
250.55 |
3.85 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
29439016 |
rs4654390 |
T |
A |
. |
PASS |
0.1286000 |
0.4957000 |
0.4325000 |
0.5159000 |
0.5593000 |
0.4026000 |
37.0 |
70.0 |
33 |
323.52 |
36.36 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
29445514 |
rs553253 |
C |
A |
. |
PASS |
0.3737000 |
0.6138000 |
0.4980000 |
0.6829000 |
0.6524000 |
0.5485000 |
36.11 |
70.0 |
111 |
1000.00 |
0.50 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
29475341 |
rs2230678 |
C |
T |
. |
PASS |
0.5598000 |
0.5447000 |
0.1528000 |
0.7694000 |
0.4427000 |
0.4950000 |
36.0 |
70.0 |
96 |
1000.00 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
29475394 |
rs2230677 |
C |
G |
. |
PASS |
0.5598000 |
0.5447000 |
0.1528000 |
0.7694000 |
0.4438000 |
0.4952000 |
36.05 |
70.0 |
74 |
1000.00 |
5.41 |
50.00 |
0 |
51.35 |
0/1 |
| chr1 |
29475648 |
rs2230679 |
T |
G |
. |
PASS |
0.7231000 |
0.7450000 |
0.5635000 |
0.8817000 |
0.6943000 |
0.7202000 |
36.47 |
70.0 |
83 |
1000.00 |
2.30 |
54.22 |
0 |
54.22 |
0/1 |
| chr1 |
29486011 |
rs72649257 |
C |
T |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0139000 |
0.0041000 |
0.0039936 |
37.0 |
70.0 |
34 |
408.21 |
3.17 |
38.24 |
0 |
38.24 |
0/1 |
| chr1 |
29529699 |
rs1062924 |
T |
C |
. |
PASS |
0.8238000 |
0.7493000 |
0.5615000 |
0.8807000 |
0.6943000 |
0.7468000 |
36.86 |
70.0 |
167 |
1000.00 |
6.46 |
50.30 |
0 |
50.30 |
0/1 |
| chr1 |
29542435 |
rs2640469 |
C |
G |
. |
PASS |
0.8820000 |
0.9380000 |
0.8254000 |
0.9861000 |
0.8333000 |
0.8898000 |
37.0 |
68.67 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
29542637 |
rs1128400 |
A |
G |
. |
PASS |
0.7231000 |
0.7334000 |
0.5625000 |
0.8797000 |
0.6943000 |
0.7181000 |
36.76 |
70.0 |
70 |
1000.00 |
9.14 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
29547495 |
rs72649272 |
C |
T |
. |
PASS |
0.0008000 |
0.0130000 |
0.0000000 |
0.0199000 |
0.0072000 |
0.0073882 |
37.0 |
70.0 |
46 |
998.64 |
7.45 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
29557224 |
rs2640466 |
C |
T |
. |
PASS |
0.6853000 |
0.7161000 |
0.5625000 |
0.8579000 |
0.6902000 |
0.7005000 |
36.23 |
70.0 |
60 |
1000.00 |
3.23 |
51.67 |
0 |
51.67 |
0/1 |
| chr1 |
29563059 |
rs75011501 |
C |
T |
. |
PASS |
0.0439000 |
0.3228000 |
0.0744000 |
0.4533000 |
0.3108000 |
0.2230000 |
35.0 |
70.0 |
13 |
167.01 |
12.82 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
29616318 |
rs2076620 |
C |
A |
. |
PASS |
0.0719000 |
0.1902000 |
0.1627000 |
0.1809000 |
0.1411000 |
0.1420000 |
37.0 |
70.0 |
45 |
872.19 |
5.33 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
29631236 |
rs3831903 |
C |
CTA |
. |
PASS |
0.6626000 |
0.5821000 |
0.8313000 |
0.4175000 |
0.6554000 |
0.6348000 |
35.0 |
70.0 |
19 |
268.43 |
5.26 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
30028329 |
rs72652657 |
G |
C |
. |
PASS |
0.0083000 |
0.1225000 |
0.0060000 |
0.1809000 |
0.0665000 |
0.0697000 |
37.0 |
70.0 |
21 |
401.41 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
30028399 |
rs113711260 |
AC |
A |
. |
PASS |
0.3911000 |
0.4669000 |
0.4960000 |
0.5577000 |
0.5235000 |
0.4820000 |
36.27 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
30028399 |
. |
ACT |
AA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
43 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
30028401 |
rs115192958 |
T |
A |
. |
PASS |
0.3911000 |
0.4669000 |
0.4960000 |
0.5577000 |
0.5235000 |
0.4820000 |
36.72 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
30028437 |
rs67913534 |
C |
T |
. |
PASS |
0.3888000 |
0.4683000 |
0.4970000 |
0.5567000 |
0.5235000 |
0.4816000 |
35.84 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
30284090 |
rs12030673 |
G |
A |
. |
PASS |
0.3238000 |
0.5605000 |
0.6756000 |
0.5557000 |
0.4673000 |
0.5020000 |
36.04 |
69.6 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
30557665 |
rs267654 |
T |
C |
. |
PASS |
0.6256000 |
0.3401000 |
0.3770000 |
0.4185000 |
0.5378000 |
0.4772000 |
37.0 |
70.0 |
89 |
1000.00 |
0.51 |
39.33 |
0 |
39.33 |
0/1 |
| chr1 |
30988426 |
. |
GCAG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
10 |
88.95 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
30988530 |
rs379605 |
G |
T |
. |
PASS |
0.6407000 |
0.4121000 |
0.4762000 |
0.4155000 |
0.3241000 |
0.4688000 |
36.4 |
70.0 |
73 |
567.06 |
4.11 |
27.40 |
0 |
27.40 |
0/1 |
| chr1 |
31186387 |
rs1746059 |
C |
T |
. |
PASS |
0.4629000 |
0.2363000 |
0.3353000 |
0.1034000 |
0.0992000 |
0.2626000 |
35.91 |
70.0 |
50 |
1000.00 |
1.09 |
66.00 |
0 |
66.00 |
0/1 |
| chr1 |
31188901 |
rs20566 |
A |
G |
. |
PASS |
0.8411000 |
0.6787000 |
0.6052000 |
0.4682000 |
0.3701000 |
0.6042000 |
36.79 |
70.0 |
114 |
1000.00 |
10.53 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
31196255 |
rs45601237 |
G |
A |
. |
PASS |
0.0333000 |
0.2032000 |
0.1726000 |
0.3350000 |
0.4223000 |
0.2214000 |
36.08 |
70.0 |
50 |
879.04 |
0.31 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
31210656 |
rs56296001 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
13 |
220.79 |
46.15 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
31215364 |
rs1050663 |
T |
C |
. |
PASS |
0.6188000 |
0.6873000 |
0.6716000 |
0.5258000 |
0.5389000 |
0.6046000 |
36.62 |
70.0 |
74 |
1000.00 |
3.72 |
43.24 |
0 |
43.24 |
0/1 |
| chr1 |
31347399 |
rs4949184 |
C |
T |
. |
PASS |
0.3782000 |
0.1628000 |
0.0665000 |
0.1799000 |
0.3200000 |
0.2344000 |
36.82 |
70.0 |
165 |
1000.00 |
4.94 |
41.21 |
0 |
41.21 |
0/1 |
| chr1 |
31349647 |
rs2491132 |
C |
T |
. |
PASS |
0.0091000 |
0.1009000 |
0.0347000 |
0.2107000 |
0.0542000 |
0.0763000 |
35.96 |
70.0 |
74 |
681.49 |
9.17 |
31.08 |
0 |
31.08 |
0/1 |
| chr1 |
31351513 |
rs1891419 |
G |
A |
. |
PASS |
0.0295000 |
0.2795000 |
0.1111000 |
0.3042000 |
0.2454000 |
0.1779000 |
37.0 |
70.0 |
91 |
1000.00 |
0.73 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
31409726 |
rs56387244 |
CCT |
C |
. |
PASS |
0.0378000 |
0.3141000 |
0.0040000 |
0.2873000 |
0.2188000 |
0.1548000 |
35.38 |
67.5 |
29 |
194.84 |
0.86 |
27.59 |
0 |
27.59 |
0/1 |
| chr1 |
31413972 |
rs3795433 |
T |
C |
. |
PASS |
0.0023000 |
0.1268000 |
0.2688000 |
0.0785000 |
0.1779000 |
0.1228000 |
36.11 |
70.0 |
68 |
866.63 |
9.48 |
39.71 |
0 |
39.71 |
0/1 |
| chr1 |
31415038 |
rs34524909,rs72358411 |
TTATATATATATATATA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.75 |
70.0 |
20 |
366.66 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
31415056 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
10 |
255.44 |
5.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
31418119 |
rs12142833 |
C |
T |
. |
PASS |
0.1770000 |
0.3300000 |
0.0040000 |
0.2873000 |
0.2209000 |
0.1941000 |
35.5 |
70.0 |
18 |
235.50 |
22.22 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
31426815 |
rs2275741 |
A |
G |
. |
PASS |
0.2859000 |
0.4726000 |
0.3462000 |
0.3767000 |
0.3640000 |
0.3574000 |
36.59 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
31478638 |
rs72062557,rs57530886,rs10580059,rs36217882,rs144492568,rs10580178 |
AAGAGAG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.54 |
70.0 |
70 |
1000.00 |
2.39 |
95.71 |
0 |
100.00 |
1/1 |
| chr1 |
31501755 |
rs4949331 |
T |
C |
. |
PASS |
0.2579000 |
0.3386000 |
0.0288000 |
0.2942000 |
0.2229000 |
0.2234000 |
37.0 |
70.0 |
37 |
733.34 |
15.44 |
56.76 |
0 |
56.76 |
0/1 |
| chr1 |
31709214 |
rs10798836 |
C |
T |
. |
PASS |
0.4962000 |
0.5245000 |
0.3462000 |
0.6223000 |
0.3292000 |
0.4627000 |
37.0 |
70.0 |
48 |
533.14 |
5.15 |
35.42 |
0 |
35.42 |
0/1 |
| chr1 |
31712314 |
rs12025507 |
C |
T |
. |
PASS |
0.0719000 |
0.3242000 |
0.4474000 |
0.2117000 |
0.4049000 |
0.2756000 |
36.31 |
70.0 |
61 |
1000.00 |
3.65 |
57.38 |
0 |
57.38 |
0/1 |
| chr1 |
31734353 |
rs41303429 |
C |
T |
. |
PASS |
0.0000000 |
0.0130000 |
0.0000000 |
0.0229000 |
0.0082000 |
0.0079872 |
36.25 |
69.38 |
67 |
1000.00 |
7.46 |
47.76 |
0 |
47.76 |
0/1 |
| chr1 |
31740668 |
rs3753374 |
C |
T |
. |
PASS |
0.0552000 |
0.4726000 |
0.1756000 |
0.6193000 |
0.3221000 |
0.3027000 |
35.0 |
70.0 |
24 |
372.52 |
8.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
31740706 |
rs3753373 |
A |
G |
. |
PASS |
0.0696000 |
0.3242000 |
0.4454000 |
0.2107000 |
0.4080000 |
0.2750000 |
37.0 |
70.0 |
36 |
360.42 |
11.11 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
31744168 |
rs3737755 |
G |
A |
. |
PASS |
0.0560000 |
0.4726000 |
0.1766000 |
0.6193000 |
0.3221000 |
0.3031000 |
37.0 |
70.0 |
15 |
173.00 |
26.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
31764693 |
rs12135540 |
G |
A |
. |
PASS |
0.0560000 |
0.4726000 |
0.1756000 |
0.6193000 |
0.3221000 |
0.3029000 |
36.4 |
70.0 |
28 |
706.65 |
7.14 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
31764713 |
rs71028753,rs142762586 |
C |
CAAG |
. |
PASS |
0.4433000 |
0.5144000 |
0.3462000 |
0.6223000 |
0.3282000 |
0.4471000 |
36.69 |
70.0 |
41 |
853.53 |
3.75 |
63.41 |
0 |
63.41 |
0/1 |
| chr1 |
31764930 |
rs10733007 |
T |
C |
. |
PASS |
0.9236000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9792000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
31840426 |
rs2271072 |
C |
G |
. |
PASS |
0.4433000 |
0.5058000 |
0.1825000 |
0.6123000 |
0.3231000 |
0.4099000 |
37.0 |
70.0 |
25 |
431.14 |
1.85 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
31882582 |
rs4012494,rs6143179 |
G |
GGCCTCA |
. |
PASS |
0.5280000 |
0.5216000 |
0.7996000 |
0.4404000 |
0.6779000 |
0.5935000 |
37.0 |
70.0 |
13 |
163.43 |
28.21 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
31883295 |
rs6701521 |
T |
C |
. |
PASS |
0.5295000 |
0.5202000 |
0.7996000 |
0.4384000 |
0.6789000 |
0.5935000 |
36.08 |
70.0 |
82 |
1000.00 |
10.13 |
47.56 |
0 |
47.56 |
0/1 |
| chr1 |
31886163 |
rs12042883 |
C |
T |
. |
PASS |
0.0840000 |
0.3429000 |
0.4008000 |
0.2634000 |
0.4172000 |
0.2847000 |
36.11 |
70.0 |
52 |
914.79 |
7.83 |
51.92 |
0 |
51.92 |
0/1 |
| chr1 |
31886833 |
rs10914377 |
T |
C |
. |
PASS |
0.5310000 |
0.5144000 |
0.7996000 |
0.4374000 |
0.6779000 |
0.5927000 |
35.56 |
70.0 |
49 |
828.28 |
1.63 |
51.02 |
0 |
51.02 |
0/1 |
| chr1 |
31896608 |
rs78029434 |
C |
T |
. |
PASS |
0.0000000 |
0.0086000 |
0.0020000 |
0.0338000 |
0.0348000 |
0.0151760 |
36.13 |
70.0 |
189 |
1000.00 |
7.64 |
51.32 |
0 |
51.32 |
0/1 |
| chr1 |
31897493 |
rs1320585 |
A |
G |
. |
PASS |
0.6740000 |
0.9697000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9091000 |
36.83 |
69.72 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
31898132 |
rs4949400 |
T |
C |
. |
PASS |
0.1452000 |
0.4481000 |
0.1994000 |
0.5596000 |
0.3252000 |
0.3165000 |
37.0 |
70.0 |
53 |
768.72 |
13.45 |
43.40 |
0 |
43.40 |
0/1 |
| chr1 |
31898162 |
rs4949401 |
C |
T |
. |
PASS |
0.1452000 |
0.4496000 |
0.1994000 |
0.5596000 |
0.3252000 |
0.3167000 |
36.08 |
70.0 |
83 |
1000.00 |
2.29 |
46.99 |
0 |
46.99 |
0/1 |
| chr1 |
31898234 |
rs4949402 |
T |
C |
. |
PASS |
0.1452000 |
0.4496000 |
0.3591000 |
0.5596000 |
0.3313000 |
0.3500000 |
36.5 |
70.0 |
116 |
1000.00 |
14.94 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
31898279 |
rs4949403 |
A |
C |
. |
PASS |
0.1452000 |
0.4496000 |
0.1994000 |
0.5596000 |
0.3252000 |
0.3167000 |
36.17 |
70.0 |
83 |
900.91 |
27.42 |
34.94 |
0 |
34.94 |
0/1 |
| chr1 |
31899684 |
rs10454445 |
A |
T |
. |
PASS |
0.6861000 |
0.9712000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9125000 |
37.0 |
69.81 |
103 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
31899704 |
rs10454446 |
C |
T |
. |
PASS |
0.3192000 |
0.8847000 |
0.8353000 |
0.8807000 |
0.9581000 |
0.7390000 |
37.0 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
31902418 |
rs10047085 |
A |
G |
. |
PASS |
0.4675000 |
0.4337000 |
0.4058000 |
0.3767000 |
0.4591000 |
0.4305000 |
36.77 |
70.0 |
100 |
1000.00 |
3.25 |
53.00 |
0 |
53.00 |
0/1 |
| chr1 |
31905889 |
rs3050461,rs5773362 |
A |
ACAG |
. |
PASS |
0.7617000 |
0.7363000 |
0.6300000 |
0.8598000 |
0.6984000 |
0.7390000 |
36.69 |
69.87 |
167 |
1000.00 |
0.15 |
94.61 |
0 |
95.21 |
1/1 |
| chr1 |
31906882 |
rs11587589 |
A |
G |
. |
PASS |
0.8918000 |
0.9150000 |
0.7331000 |
0.9751000 |
0.7464000 |
0.8514000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
31907102 |
rs7417775 |
A |
G |
. |
PASS |
0.3555000 |
0.8487000 |
0.5734000 |
0.9662000 |
0.6892000 |
0.6556000 |
36.71 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
31976727 |
rs10158294 |
A |
G |
. |
PASS |
0.5908000 |
0.3948000 |
0.4891000 |
0.5219000 |
0.3967000 |
0.4914000 |
36.61 |
70.0 |
161 |
1000.00 |
2.36 |
38.51 |
0 |
38.51 |
0/1 |
| chr1 |
32084904 |
rs1056526 |
C |
T |
. |
PASS |
0.0794000 |
0.4654000 |
0.2371000 |
0.5636000 |
0.5450000 |
0.3528000 |
36.43 |
70.0 |
106 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32092525 |
rs2271933 |
A |
G |
. |
PASS |
0.2753000 |
0.5086000 |
0.2440000 |
0.6332000 |
0.6155000 |
0.4397000 |
36.63 |
69.8 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32096265 |
rs1061770 |
A |
G |
. |
PASS |
0.0794000 |
0.4741000 |
0.2480000 |
0.5676000 |
0.5440000 |
0.3568000 |
36.79 |
69.82 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32118160 |
rs1061392 |
C |
A |
. |
PASS |
0.3457000 |
0.5202000 |
0.2460000 |
0.6252000 |
0.6074000 |
0.4571000 |
36.08 |
70.0 |
13 |
449.60 |
12.82 |
92.31 |
0 |
100.00 |
1/1 |
| chr1 |
32119347 |
rs67961612 |
AACAC |
A |
. |
PASS |
0.2912000 |
0.4885000 |
0.2183000 |
0.5666000 |
0.5409000 |
0.4079000 |
35.63 |
70.0 |
19 |
680.79 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32119431 |
rs3817398 |
T |
C |
. |
PASS |
0.2837000 |
0.4899000 |
0.2173000 |
0.5656000 |
0.5368000 |
0.4050000 |
36.43 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32131163 |
rs1356803 |
C |
G |
. |
PASS |
0.0741000 |
0.4640000 |
0.2262000 |
0.5577000 |
0.5429000 |
0.3474000 |
36.7 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32134491 |
rs2271929 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
70.0 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32136168 |
rs2292990 |
G |
C |
. |
PASS |
0.2247000 |
0.6210000 |
0.5962000 |
0.6282000 |
0.6166000 |
0.4437000 |
36.62 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32140733 |
rs2292993 |
C |
T |
. |
PASS |
0.2005000 |
0.6052000 |
0.2480000 |
0.5845000 |
0.5992000 |
0.4211000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32146425 |
rs11590964 |
C |
T |
. |
PASS |
0.4743000 |
0.6297000 |
0.2262000 |
0.5895000 |
0.6002000 |
0.4936000 |
35.6 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32146764 |
rs2297684 |
C |
T |
. |
PASS |
0.4902000 |
0.6499000 |
0.2302000 |
0.6163000 |
0.6063000 |
0.5080000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32148571 |
rs10737358 |
A |
G |
. |
PASS |
0.9985000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9994000 |
36.06 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32155284 |
rs2297682 |
T |
C |
. |
PASS |
0.7761000 |
0.3473000 |
0.2302000 |
0.5686000 |
0.3323000 |
0.4784000 |
37.0 |
70.0 |
19 |
369.81 |
5.74 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
32155911 |
rs6425780 |
G |
T |
. |
PASS |
0.6929000 |
0.3357000 |
0.1508000 |
0.5646000 |
0.3241000 |
0.4365000 |
35.67 |
70.0 |
61 |
871.54 |
2.06 |
44.26 |
0 |
44.26 |
0/1 |
| chr1 |
32155929 |
rs2297681 |
G |
A |
. |
PASS |
0.3313000 |
0.2680000 |
0.1984000 |
0.4791000 |
0.2229000 |
0.3043000 |
36.62 |
70.0 |
67 |
1000.00 |
7.74 |
47.76 |
0 |
47.76 |
0/1 |
| chr1 |
32156722 |
rs10914467 |
G |
A |
. |
PASS |
0.2587000 |
0.2824000 |
0.1240000 |
0.5328000 |
0.2638000 |
0.2909000 |
37.0 |
70.0 |
64 |
986.23 |
9.16 |
45.31 |
0 |
45.31 |
0/1 |
| chr1 |
32156869 |
rs10798884 |
A |
T |
. |
PASS |
0.9977000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
36.19 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32156940 |
rs2297680 |
C |
A |
. |
PASS |
0.0825000 |
0.3545000 |
0.1488000 |
0.1083000 |
0.3967000 |
0.2001000 |
37.0 |
70.0 |
24 |
225.30 |
25.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
32157009 |
rs2297679 |
G |
T |
. |
PASS |
0.1097000 |
0.3588000 |
0.1528000 |
0.1083000 |
0.4070000 |
0.2107000 |
35.91 |
70.0 |
57 |
1000.00 |
4.78 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
32157531 |
rs2297676 |
T |
C |
. |
PASS |
0.3003000 |
0.2896000 |
0.1240000 |
0.5348000 |
0.2669000 |
0.3039000 |
37.0 |
70.0 |
37 |
858.65 |
11.04 |
64.86 |
0 |
64.86 |
0/1 |
| chr1 |
32158304 |
rs2297675 |
A |
G |
. |
PASS |
0.1165000 |
0.3602000 |
0.1548000 |
0.1123000 |
0.4029000 |
0.2131000 |
36.37 |
70.0 |
61 |
1000.00 |
1.64 |
62.30 |
0 |
62.30 |
0/1 |
| chr1 |
32158374 |
rs3818788 |
T |
C |
. |
PASS |
0.7663000 |
0.6816000 |
0.3581000 |
0.6491000 |
0.6718000 |
0.6304000 |
36.7 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32160918 |
rs6656079 |
A |
G |
. |
PASS |
0.8139000 |
0.6686000 |
0.3611000 |
0.6521000 |
0.3906000 |
0.5875000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32161675 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
70.0 |
45 |
108.32 |
160.00 |
15.56 |
0 |
15.56 |
0/1 |
| chr1 |
32163950 |
rs2297674 |
G |
C |
. |
PASS |
0.6097000 |
0.6383000 |
0.3056000 |
0.6541000 |
0.5982000 |
0.5591000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32164206 |
rs2228550 |
T |
G |
. |
PASS |
0.8200000 |
0.6599000 |
0.3472000 |
0.6541000 |
0.5971000 |
0.6258000 |
36.65 |
70.0 |
104 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32165495 |
rs2228552 |
G |
T |
. |
PASS |
0.2610000 |
0.4553000 |
0.2708000 |
0.6481000 |
0.5665000 |
0.4273000 |
36.38 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32193572 |
rs55637976 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0003994 |
36.59 |
70.0 |
99 |
1000.00 |
2.12 |
59.60 |
0 |
59.60 |
0/1 |
| chr1 |
32193647 |
rs1127100 |
T |
C |
. |
PASS |
0.8321000 |
0.5159000 |
0.3492000 |
0.6531000 |
0.5706000 |
0.6040000 |
36.25 |
70.0 |
160 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32196647 |
rs909001 |
C |
G |
. |
PASS |
0.7579000 |
0.2594000 |
0.2331000 |
0.1590000 |
0.3609000 |
0.3854000 |
36.43 |
70.0 |
59 |
650.96 |
13.24 |
35.59 |
0 |
35.59 |
0/1 |
| chr1 |
32203163 |
rs2271931 |
C |
G |
. |
PASS |
0.0333000 |
0.1700000 |
0.1141000 |
0.1123000 |
0.3098000 |
0.1384000 |
36.5 |
70.0 |
42 |
827.44 |
0.00 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
32203218 |
rs2271932 |
C |
A |
. |
PASS |
0.0204000 |
0.1542000 |
0.0794000 |
0.0716000 |
0.0798000 |
0.0727000 |
36.52 |
70.0 |
91 |
1000.00 |
2.07 |
54.95 |
0 |
54.95 |
0/1 |
| chr1 |
32207581 |
rs2297600 |
T |
G |
. |
PASS |
0.7542000 |
0.2651000 |
0.2341000 |
0.1630000 |
0.3456000 |
0.3832000 |
36.84 |
70.0 |
171 |
1000.00 |
1.23 |
45.03 |
0 |
45.03 |
0/1 |
| chr1 |
32221913 |
rs4949223 |
G |
A |
. |
PASS |
0.0333000 |
0.1715000 |
0.1121000 |
0.1133000 |
0.2996000 |
0.1364000 |
35.8 |
70.0 |
100 |
1000.00 |
6.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
32258805 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.83 |
70.0 |
23 |
126.36 |
37.68 |
26.09 |
1 |
26.09 |
0/1 |
| chr1 |
32258805 |
. |
AAG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.83 |
70.0 |
29 |
123.35 |
57.47 |
20.69 |
1 |
20.69 |
0/1 |
| chr1 |
32266026 |
rs552124 |
A |
G |
. |
PASS |
0.8321000 |
0.7406000 |
0.5585000 |
0.7316000 |
0.7924000 |
0.7364000 |
36.52 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32280610 |
rs6664445 |
T |
C |
. |
PASS |
0.6399000 |
0.6671000 |
0.7212000 |
0.6730000 |
0.7464000 |
0.6875000 |
37.0 |
70.0 |
74 |
1000.00 |
9.75 |
44.59 |
0 |
44.59 |
0/1 |
| chr1 |
32314400 |
rs1536131 |
A |
G |
. |
PASS |
0.7171000 |
0.3963000 |
0.6429000 |
0.5905000 |
0.7157000 |
0.6320000 |
34.91 |
70.0 |
69 |
1000.00 |
5.80 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
32502430 |
rs3738002 |
T |
A |
. |
PASS |
0.0779000 |
0.2104000 |
0.2371000 |
0.0567000 |
0.3016000 |
0.1677000 |
37.0 |
70.0 |
22 |
314.86 |
14.55 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
32541440 |
. |
G |
GGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.92 |
70.0 |
39 |
851.55 |
6.36 |
64.10 |
0 |
66.67 |
0/1 |
| chr1 |
32542507 |
rs4317856 |
C |
A |
. |
PASS |
0.0537000 |
0.1988000 |
0.2341000 |
0.0567000 |
0.2832000 |
0.1556000 |
37.0 |
70.0 |
25 |
264.06 |
10.67 |
36.00 |
0 |
36.00 |
0/1 |
| chr1 |
32557486 |
rs744455 |
A |
G |
. |
PASS |
0.2927000 |
0.2320000 |
0.2351000 |
0.0596000 |
0.2812000 |
0.2236000 |
35.96 |
70.0 |
46 |
765.77 |
17.39 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
32623108 |
rs41311207 |
A |
G |
. |
PASS |
0.0779000 |
0.2104000 |
0.2321000 |
0.0567000 |
0.2853000 |
0.1635000 |
34.23 |
70.0 |
36 |
366.16 |
4.70 |
36.11 |
0 |
36.11 |
0/1 |
| chr1 |
32625250 |
rs41308244 |
G |
C |
. |
PASS |
0.0378000 |
0.2089000 |
0.2321000 |
0.0567000 |
0.2853000 |
0.1528000 |
37.0 |
70.0 |
17 |
204.60 |
5.04 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
32646186 |
rs2273164 |
C |
G |
. |
PASS |
0.2307000 |
0.2305000 |
0.2312000 |
0.0567000 |
0.2853000 |
0.2065000 |
37.0 |
70.0 |
15 |
335.93 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
32658062 |
rs79952364 |
G |
GGT |
. |
PASS |
0.9569000 |
0.7925000 |
0.9216000 |
0.6024000 |
0.8170000 |
0.8285000 |
36.68 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
32658447 |
rs16834916 |
G |
A |
. |
PASS |
0.2307000 |
0.2305000 |
0.2312000 |
0.0567000 |
0.2853000 |
0.2065000 |
35.67 |
70.0 |
16 |
283.29 |
9.72 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
32671030 |
rs2295116 |
C |
T |
. |
PASS |
0.1324000 |
0.2104000 |
0.2302000 |
0.0567000 |
0.2843000 |
0.1773000 |
37.0 |
70.0 |
14 |
301.32 |
12.70 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
32671065 |
rs2295117 |
A |
C |
. |
PASS |
0.2451000 |
0.2320000 |
0.2302000 |
0.0567000 |
0.2843000 |
0.2101000 |
37.0 |
70.0 |
12 |
219.65 |
26.19 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
32672783 |
. |
CGA |
CCT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
26 |
374.36 |
15.38 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
32672908 |
rs3903683 |
T |
G |
. |
PASS |
0.3056000 |
0.2378000 |
0.2302000 |
0.0567000 |
0.2873000 |
0.2274000 |
36.76 |
69.61 |
92 |
1000.00 |
3.28 |
55.43 |
0 |
55.43 |
0/1 |
| chr1 |
32678506 |
rs58238092 |
C |
T |
. |
PASS |
0.3056000 |
0.2378000 |
0.2302000 |
0.0567000 |
0.2873000 |
0.2274000 |
35.0 |
70.0 |
13 |
167.01 |
12.82 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
32680551 |
rs72666785 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0050000 |
0.0000000 |
0.0009984 |
37.0 |
70.0 |
56 |
1000.00 |
6.93 |
58.93 |
0 |
58.93 |
0/1 |
| chr1 |
32680606 |
rs72666786 |
T |
C |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0099000 |
0.0010000 |
0.0023962 |
37.0 |
70.0 |
17 |
125.21 |
28.24 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
32682384 |
rs479014 |
G |
A |
. |
PASS |
0.0938000 |
0.0058000 |
0.0000000 |
0.0089000 |
0.0082000 |
0.0290000 |
37.0 |
70.0 |
26 |
557.60 |
1.92 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
32682962 |
rs41311189 |
C |
A |
. |
PASS |
0.1331000 |
0.2089000 |
0.2302000 |
0.0567000 |
0.2873000 |
0.1779000 |
37.0 |
70.0 |
67 |
1000.00 |
6.74 |
46.27 |
0 |
46.27 |
0/1 |
| chr1 |
32687777 |
rs17523023 |
A |
G |
. |
PASS |
0.2360000 |
0.2305000 |
0.2302000 |
0.0567000 |
0.2873000 |
0.2081000 |
37.0 |
70.0 |
25 |
477.07 |
7.43 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
32694819 |
rs72666792 |
A |
G |
. |
PASS |
0.1059000 |
0.2118000 |
0.2302000 |
0.0567000 |
0.2873000 |
0.1711000 |
35.94 |
70.0 |
63 |
1000.00 |
4.76 |
53.97 |
0 |
53.97 |
0/1 |
| chr1 |
32696628 |
rs72666795 |
A |
C |
. |
PASS |
0.2436000 |
0.2349000 |
0.2302000 |
0.0567000 |
0.2873000 |
0.2107000 |
36.43 |
70.0 |
43 |
699.12 |
11.96 |
48.84 |
0 |
48.84 |
0/1 |
| chr1 |
32713199 |
rs2291063 |
A |
G |
. |
PASS |
0.1263000 |
0.2176000 |
0.2550000 |
0.0328000 |
0.2393000 |
0.1681000 |
36.48 |
69.13 |
59 |
738.66 |
0.74 |
38.98 |
0 |
38.98 |
0/1 |
| chr1 |
33060834 |
rs11327743 |
AT |
A |
. |
PASS |
0.1967000 |
0.0591000 |
0.1071000 |
0.1064000 |
0.0532000 |
0.1134000 |
35.36 |
70.0 |
45 |
705.45 |
10.71 |
48.89 |
0 |
48.89 |
0/1 |
| chr1 |
33065947 |
rs704886 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9998000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33117071 |
rs583114 |
T |
G |
. |
PASS |
0.8767000 |
0.9841000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9653000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33133968 |
rs2762904 |
T |
C |
. |
PASS |
0.8873000 |
0.9841000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9679000 |
36.29 |
69.6 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33134774 |
rs359955 |
A |
C |
. |
PASS |
0.1914000 |
0.6383000 |
0.7679000 |
0.7515000 |
0.7669000 |
0.5942000 |
36.29 |
70.0 |
34 |
559.14 |
23.53 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
33134989 |
rs359956 |
A |
G |
. |
PASS |
0.4902000 |
0.7435000 |
0.8690000 |
0.9632000 |
0.9223000 |
0.7810000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33138516 |
rs607202 |
A |
C |
. |
PASS |
0.8873000 |
0.9841000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9681000 |
36.52 |
70.0 |
25 |
992.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33160878 |
rs360042 |
C |
T |
. |
PASS |
0.7829000 |
0.7738000 |
0.8681000 |
0.9652000 |
0.9223000 |
0.8626000 |
36.42 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33161212 |
rs360041 |
T |
C |
. |
PASS |
0.7829000 |
0.7738000 |
0.8681000 |
0.9652000 |
0.9223000 |
0.8626000 |
37.0 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33199367 |
rs699006 |
C |
G |
. |
PASS |
0.4652000 |
0.6700000 |
0.5248000 |
0.5696000 |
0.5532000 |
0.5437000 |
36.1 |
69.5 |
112 |
1000.00 |
8.21 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
33233323 |
rs360523 |
A |
G |
. |
PASS |
0.9402000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9826000 |
36.7 |
69.5 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33235626 |
rs3737995 |
G |
A |
. |
PASS |
0.0333000 |
0.4380000 |
0.4484000 |
0.3648000 |
0.3834000 |
0.3079000 |
37.0 |
70.0 |
70 |
1000.00 |
0.00 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
33235651 |
rs12730560 |
A |
G |
. |
PASS |
0.2738000 |
0.2291000 |
0.0020000 |
0.1342000 |
0.0757000 |
0.1462000 |
37.0 |
70.0 |
62 |
908.71 |
7.89 |
43.55 |
0 |
43.55 |
0/1 |
| chr1 |
33237885 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.2 |
70.0 |
71 |
304.19 |
146.48 |
21.13 |
0 |
21.13 |
0/1 |
| chr1 |
33237889 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
72 |
522.02 |
141.67 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
33245802 |
rs699005 |
C |
G |
. |
PASS |
0.0998000 |
0.1787000 |
0.0010000 |
0.1074000 |
0.0746000 |
0.0875000 |
36.74 |
70.0 |
83 |
1000.00 |
4.56 |
55.42 |
0 |
55.42 |
0/1 |
| chr1 |
33256884 |
rs1765223 |
C |
A |
. |
PASS |
0.3041000 |
0.3242000 |
0.2272000 |
0.3191000 |
0.2873000 |
0.2911000 |
37.0 |
70.0 |
23 |
228.32 |
4.35 |
34.78 |
0 |
34.78 |
0/1 |
| chr1 |
33276424 |
rs4951787 |
G |
A |
. |
PASS |
0.9425000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9840000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33282775 |
rs72654020 |
C |
A |
. |
PASS |
0.0938000 |
0.1772000 |
0.0010000 |
0.1074000 |
0.0746000 |
0.0857000 |
35.82 |
70.0 |
93 |
1000.00 |
2.66 |
54.84 |
0 |
54.84 |
0/1 |
| chr1 |
33293748 |
rs10753266 |
T |
C |
. |
PASS |
0.9425000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9840000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33318634 |
rs785274 |
G |
A |
. |
PASS |
0.9425000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9840000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33330432 |
rs1284368 |
A |
G |
. |
PASS |
0.9425000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9840000 |
36.5 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33360343 |
rs1053522 |
G |
A |
. |
PASS |
0.0303000 |
0.1499000 |
0.0000000 |
0.0547000 |
0.0583000 |
0.0511000 |
37.0 |
70.0 |
16 |
128.22 |
25.00 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
33366704 |
rs114172030 |
T |
A |
. |
PASS |
0.0295000 |
0.1499000 |
0.0000000 |
0.0547000 |
0.0573000 |
0.0507000 |
34.0 |
70.0 |
13 |
79.32 |
0.00 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
33402515 |
rs35462688 |
C |
T |
. |
PASS |
0.0121000 |
0.1571000 |
0.0000000 |
0.0765000 |
0.0736000 |
0.0547000 |
36.67 |
70.0 |
83 |
1000.00 |
6.76 |
43.37 |
0 |
43.37 |
0/1 |
| chr1 |
33402542 |
rs35756506 |
G |
C |
. |
PASS |
0.0151000 |
0.1585000 |
0.0000000 |
0.0765000 |
0.0736000 |
0.0557000 |
37.0 |
70.0 |
65 |
853.76 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
33408138 |
rs1149128 |
T |
G |
. |
PASS |
0.2890000 |
0.1859000 |
0.0000000 |
0.0805000 |
0.0736000 |
0.1326000 |
37.0 |
70.0 |
10 |
58.59 |
26.67 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
33409551 |
rs194644 |
C |
T |
. |
PASS |
0.4304000 |
0.4524000 |
0.3284000 |
0.3449000 |
0.2986000 |
0.3700000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33409693 |
rs194645 |
G |
A |
. |
PASS |
0.0265000 |
0.2378000 |
0.2748000 |
0.2505000 |
0.2198000 |
0.1885000 |
36.64 |
70.0 |
66 |
1000.00 |
6.06 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
33415409 |
rs11408991 |
G |
GT |
. |
PASS |
0.3638000 |
0.2032000 |
0.0000000 |
0.0924000 |
0.0746000 |
0.1573000 |
35.8 |
70.0 |
20 |
297.44 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
33415466 |
rs7545739 |
T |
C |
. |
PASS |
0.3638000 |
0.2032000 |
0.0000000 |
0.0924000 |
0.0746000 |
0.1573000 |
37.0 |
70.0 |
11 |
226.81 |
7.79 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
33416907 |
rs194647 |
G |
A |
. |
PASS |
0.0265000 |
0.2378000 |
0.2738000 |
0.2515000 |
0.2188000 |
0.1883000 |
36.01 |
69.86 |
281 |
1000.00 |
0.28 |
51.60 |
0 |
51.60 |
0/1 |
| chr1 |
33445837 |
rs16835229 |
C |
T |
. |
PASS |
0.2897000 |
0.1916000 |
0.0020000 |
0.1044000 |
0.0726000 |
0.1386000 |
37.0 |
70.0 |
12 |
140.26 |
3.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
33476292 |
rs74066439 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.2 |
69.8 |
27 |
71.09 |
34.07 |
18.52 |
0 |
18.52 |
0/1 |
| chr1 |
33476353 |
rs66599471 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
69.75 |
71 |
75.98 |
26.41 |
11.27 |
0 |
11.27 |
0/1 |
| chr1 |
33547768 |
rs1871322 |
T |
C |
. |
PASS |
0.3449000 |
0.3444000 |
0.2768000 |
0.3042000 |
0.3057000 |
0.3153000 |
35.29 |
70.0 |
11 |
214.80 |
18.18 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
33560338 |
rs804428 |
A |
G |
. |
PASS |
0.9977000 |
0.9827000 |
1.0000000 |
0.9602000 |
0.9980000 |
0.9886000 |
37.0 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33642152 |
rs643402 |
C |
T |
. |
PASS |
0.7080000 |
0.7939000 |
0.7956000 |
0.7545000 |
0.7198000 |
0.7492000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33646950 |
rs622407 |
A |
G |
. |
PASS |
0.7095000 |
0.7954000 |
0.7946000 |
0.7545000 |
0.7198000 |
0.7496000 |
36.87 |
70.0 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33741587 |
rs6692274 |
C |
T |
. |
PASS |
0.1104000 |
0.0115000 |
0.0030000 |
0.0408000 |
0.0174000 |
0.0429000 |
37.0 |
70.0 |
12 |
56.72 |
66.67 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
33742228 |
rs4475712 |
T |
C |
. |
PASS |
0.9713000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9922000 |
36.24 |
69.75 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33751103 |
rs7526544 |
T |
A |
. |
PASS |
0.5764000 |
0.3357000 |
0.3204000 |
0.4205000 |
0.5573000 |
0.4565000 |
37.0 |
68.67 |
37 |
478.56 |
1.44 |
40.54 |
0 |
40.54 |
0/1 |
| chr1 |
33760743 |
rs4641276 |
T |
C |
. |
PASS |
0.9713000 |
0.8357000 |
0.7589000 |
0.7584000 |
0.7168000 |
0.8173000 |
36.55 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33778063 |
rs60103055 |
G |
A |
. |
PASS |
0.1316000 |
0.0144000 |
0.1567000 |
0.0467000 |
0.0307000 |
0.0837000 |
35.29 |
67.14 |
26 |
169.65 |
6.59 |
26.92 |
0 |
26.92 |
0/1 |
| chr1 |
33778226 |
rs12563102 |
G |
A |
. |
PASS |
0.7057000 |
0.2205000 |
0.2530000 |
0.2803000 |
0.3497000 |
0.3924000 |
37.0 |
70.0 |
25 |
518.83 |
8.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
33778591 |
rs6664593 |
T |
C |
. |
PASS |
0.8858000 |
0.4914000 |
0.7510000 |
0.6412000 |
0.7168000 |
0.7218000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33794416 |
rs72658237 |
T |
C |
. |
PASS |
0.0076000 |
0.0720000 |
0.2708000 |
0.1153000 |
0.1084000 |
0.1108000 |
37.0 |
70.0 |
21 |
322.03 |
5.71 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
33794853 |
rs7551448 |
A |
G |
. |
PASS |
0.9932000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9980000 |
36.17 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33796891 |
rs41265891 |
C |
A |
. |
PASS |
0.0076000 |
0.0720000 |
0.2708000 |
0.1153000 |
0.1084000 |
0.1108000 |
37.0 |
70.0 |
14 |
88.33 |
21.43 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
33798126 |
rs72658242 |
T |
G |
. |
PASS |
0.0030000 |
0.0389000 |
0.0000000 |
0.0606000 |
0.0051000 |
0.0193690 |
37.0 |
70.0 |
12 |
177.88 |
33.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
33820033 |
rs16835408 |
C |
T |
. |
PASS |
0.0083000 |
0.0720000 |
0.2927000 |
0.1183000 |
0.1145000 |
0.1172000 |
36.25 |
70.0 |
136 |
1000.00 |
1.47 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
33832865 |
rs6425816 |
A |
G |
. |
PASS |
0.8843000 |
0.4856000 |
0.7708000 |
0.6322000 |
0.7444000 |
0.7282000 |
36.76 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33834014 |
rs72658266 |
G |
T |
. |
PASS |
0.0068000 |
0.0735000 |
0.2927000 |
0.1173000 |
0.1145000 |
0.1168000 |
35.0 |
70.0 |
10 |
171.90 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
33954352 |
rs3795418 |
A |
G |
. |
PASS |
0.8540000 |
0.6254000 |
0.7381000 |
0.7366000 |
0.7434000 |
0.7538000 |
35.86 |
70.0 |
21 |
817.67 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33957152 |
rs4403594 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9960000 |
1.0000000 |
0.9992000 |
36.09 |
70.0 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33960062 |
rs9943259 |
A |
G |
. |
PASS |
0.8495000 |
0.6239000 |
0.7381000 |
0.7376000 |
0.7434000 |
0.7526000 |
36.86 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33979880 |
rs11333218 |
CT |
C |
. |
PASS |
0.4713000 |
0.3415000 |
0.5179000 |
0.4503000 |
0.4642000 |
0.4571000 |
33.89 |
69.29 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
33985353 |
rs2641959 |
C |
G |
. |
PASS |
0.7103000 |
0.5231000 |
0.7341000 |
0.5666000 |
0.6247000 |
0.6436000 |
36.4 |
69.75 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34023217 |
. |
G |
GACACAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
70.0 |
19 |
421.77 |
12.87 |
47.37 |
0 |
68.42 |
0/1 |
| chr1 |
34024928 |
rs16835591 |
T |
C |
. |
PASS |
0.0091000 |
0.0893000 |
0.2192000 |
0.1670000 |
0.1564000 |
0.1230000 |
36.9 |
69.83 |
120 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34025030 |
rs16835593 |
A |
G |
. |
PASS |
0.0091000 |
0.0893000 |
0.2192000 |
0.1531000 |
0.1554000 |
0.1200000 |
36.75 |
70.0 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34042810 |
rs1389560 |
A |
G |
. |
PASS |
0.4168000 |
0.2320000 |
0.2649000 |
0.3439000 |
0.4325000 |
0.3490000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34042834 |
rs16835628 |
C |
A |
. |
PASS |
0.0083000 |
0.0937000 |
0.2222000 |
0.1620000 |
0.1319000 |
0.1182000 |
36.48 |
70.0 |
23 |
909.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34043169 |
rs11291100 |
TC |
T |
. |
PASS |
1.0000000 |
1.0000000 |
0.9990000 |
1.0000000 |
1.0000000 |
0.9998000 |
36.32 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34052305 |
rs12727575 |
C |
T |
. |
PASS |
0.1150000 |
0.1700000 |
0.2054000 |
0.3310000 |
0.1933000 |
0.1995000 |
37.0 |
70.0 |
19 |
369.82 |
12.44 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
34052605 |
rs7526990 |
A |
G |
. |
PASS |
0.7239000 |
0.6556000 |
0.7589000 |
0.6302000 |
0.6963000 |
0.6973000 |
37.0 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34076550 |
rs6672528 |
T |
C |
. |
PASS |
0.0575000 |
0.0548000 |
0.1359000 |
0.1342000 |
0.1135000 |
0.0992000 |
37.0 |
70.0 |
19 |
202.74 |
25.56 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
34189917 |
rs519370 |
C |
T |
. |
PASS |
0.7602000 |
0.8156000 |
0.9940000 |
0.6372000 |
0.7577000 |
0.7897000 |
37.0 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34189957 |
rs11346874 |
AG |
A |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
34.92 |
70.0 |
12 |
431.18 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34285342 |
rs17342512 |
G |
A |
. |
PASS |
0.5840000 |
0.6441000 |
0.6627000 |
0.5278000 |
0.6084000 |
0.6016000 |
36.53 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34285381 |
rs11578857 |
C |
T |
. |
PASS |
0.5840000 |
0.6455000 |
0.6627000 |
0.5278000 |
0.6063000 |
0.6014000 |
34.95 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34285995 |
rs3795414 |
G |
A |
. |
PASS |
0.2005000 |
0.6081000 |
0.6161000 |
0.5219000 |
0.5971000 |
0.4826000 |
35.62 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34286166 |
rs5773432 |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.26 |
69.47 |
41 |
1000.00 |
5.39 |
92.68 |
0 |
92.68 |
0/1 |
| chr1 |
34286189 |
rs3843294 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.39 |
70.0 |
30 |
947.23 |
13.33 |
90.00 |
0 |
93.33 |
1/1 |
| chr1 |
34314519 |
rs16835990 |
C |
T |
. |
PASS |
0.0340000 |
0.1873000 |
0.3155000 |
0.1183000 |
0.3323000 |
0.1871000 |
37.0 |
68.82 |
27 |
596.36 |
4.79 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
34329897 |
rs911218 |
T |
C |
. |
PASS |
0.9985000 |
0.9870000 |
1.0000000 |
0.9553000 |
0.9969000 |
0.9882000 |
36.43 |
70.0 |
85 |
1000.00 |
1.12 |
98.82 |
0 |
98.82 |
1/1 |
| chr1 |
34330067 |
rs10379 |
A |
C |
. |
PASS |
0.9917000 |
0.9063000 |
0.9008000 |
0.7475000 |
0.9335000 |
0.9012000 |
36.6 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
34624938 |
rs116365434 |
C |
G |
. |
PASS |
0.0946000 |
0.1499000 |
0.0923000 |
0.0865000 |
0.0593000 |
0.0933000 |
36.25 |
70.0 |
78 |
1000.00 |
13.62 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
34624939 |
rs57364092 |
CA |
C |
. |
PASS |
0.6581000 |
0.4611000 |
0.3958000 |
0.6501000 |
0.5429000 |
0.5539000 |
35.66 |
70.0 |
79 |
1000.00 |
1.23 |
98.73 |
1 |
100.00 |
1/1 |
| chr1 |
34624939 |
. |
CAC |
CG |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
77 |
1000.00 |
4.33 |
54.55 |
1 |
100.00 |
0/1 |
| chr1 |
34624941 |
rs58241527 |
C |
G |
. |
PASS |
0.1936000 |
0.2478000 |
0.2153000 |
0.4115000 |
0.3088000 |
0.2718000 |
35.24 |
70.0 |
75 |
1000.00 |
4.23 |
54.67 |
1 |
54.67 |
0/1 |
| chr1 |
34684463 |
rs705207 |
G |
A |
. |
PASS |
0.7481000 |
0.7896000 |
0.7917000 |
0.7525000 |
0.7894000 |
0.7716000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
35251219 |
rs41266429 |
C |
A |
. |
PASS |
0.0711000 |
0.1787000 |
0.0347000 |
0.1412000 |
0.0491000 |
0.0885000 |
36.33 |
70.0 |
30 |
612.94 |
8.89 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
35251229 |
rs476220 |
G |
A |
. |
PASS |
0.6551000 |
0.3890000 |
0.1716000 |
0.4761000 |
0.2403000 |
0.4040000 |
36.25 |
70.0 |
27 |
542.58 |
8.33 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
35259961 |
rs1764390 |
A |
G |
. |
PASS |
0.8533000 |
0.5130000 |
0.4841000 |
0.6481000 |
0.4990000 |
0.6214000 |
37.0 |
70.0 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
35260202 |
rs41266431 |
G |
A |
. |
PASS |
0.0091000 |
0.1110000 |
0.0000000 |
0.1421000 |
0.0399000 |
0.0541000 |
37.0 |
70.0 |
61 |
1000.00 |
8.94 |
54.10 |
0 |
54.10 |
0/1 |
| chr1 |
35269895 |
rs512161 |
A |
G |
. |
PASS |
0.6278000 |
0.3631000 |
0.4752000 |
0.4404000 |
0.3599000 |
0.4704000 |
37.0 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
35332926 |
rs1001616 |
G |
C |
. |
PASS |
0.0590000 |
0.4654000 |
0.8006000 |
0.3161000 |
0.5010000 |
0.4026000 |
37.0 |
70.0 |
15 |
294.16 |
26.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
35350573 |
rs34565935 |
CT |
C |
. |
PASS |
0.0212000 |
0.0591000 |
0.0060000 |
0.1233000 |
0.1564000 |
0.0703000 |
35.75 |
70.0 |
41 |
644.96 |
12.44 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
35351052 |
rs141871603 |
C |
A |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0129000 |
0.0041000 |
0.0037939 |
36.33 |
70.0 |
45 |
567.79 |
15.56 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
35561510 |
rs2101973 |
G |
A |
. |
PASS |
0.2496000 |
0.6254000 |
0.3522000 |
0.8936000 |
0.7914000 |
0.5575000 |
36.17 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
35562965 |
rs2971408 |
G |
A |
. |
PASS |
0.8018000 |
0.7392000 |
0.7411000 |
0.9215000 |
0.9254000 |
0.8291000 |
36.53 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
35563206 |
rs6658571 |
C |
G |
. |
PASS |
0.3623000 |
0.6441000 |
0.3522000 |
0.8946000 |
0.7914000 |
0.5901000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
35576145 |
rs2935955 |
C |
T |
. |
PASS |
0.8533000 |
0.7493000 |
0.7391000 |
0.9215000 |
0.9254000 |
0.8436000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
35835937 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
27.0 |
70.0 |
30 |
63.67 |
146.67 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
35925861 |
rs2819002 |
C |
A |
. |
PASS |
0.9977000 |
0.9755000 |
1.0000000 |
0.9573000 |
0.9959000 |
0.9866000 |
35.91 |
70.0 |
22 |
855.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36203715 |
rs67465242 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
70.0 |
11 |
360.68 |
12.73 |
90.91 |
1 |
100.00 |
1/1 |
| chr1 |
36203715 |
. |
ATAT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
11 |
247.01 |
22.73 |
72.73 |
1 |
100.00 |
0/1 |
| chr1 |
36203715 |
. |
ATAT |
AAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
11 |
247.01 |
27.27 |
18.18 |
1 |
100.00 |
0/1 |
| chr1 |
36203716 |
. |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
11 |
247.01 |
22.73 |
72.73 |
1 |
72.73 |
0/1 |
| chr1 |
36203717 |
rs376763747 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.82 |
70.0 |
11 |
323.69 |
22.73 |
72.73 |
1 |
100.00 |
0/1 |
| chr1 |
36203718 |
rs2336141 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.82 |
70.0 |
11 |
323.69 |
60.61 |
27.27 |
1 |
100.00 |
0/1 |
| chr1 |
36203719 |
rs3838997 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
11 |
342.80 |
72.73 |
18.18 |
0 |
100.00 |
0/1 |
| chr1 |
36203720 |
rs201555109 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
11 |
342.80 |
16.16 |
81.82 |
0 |
100.00 |
0/1 |
| chr1 |
36213712 |
rs516992 |
G |
T |
. |
PASS |
0.9115000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9756000 |
37.0 |
70.0 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36216835 |
rs535638 |
C |
T |
. |
PASS |
0.2322000 |
0.5605000 |
0.2599000 |
0.8638000 |
0.7965000 |
0.5204000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36307412 |
rs5773512,rs10615800 |
CAT |
C |
. |
PASS |
0.5537000 |
0.7334000 |
0.7589000 |
0.6789000 |
0.7004000 |
0.6737000 |
36.68 |
70.0 |
21 |
604.87 |
8.02 |
90.48 |
0 |
90.48 |
0/1 |
| chr1 |
36316571 |
rs4652895 |
A |
C |
. |
PASS |
0.1407000 |
0.5375000 |
0.2530000 |
0.8539000 |
0.8037000 |
0.4910000 |
36.03 |
69.68 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36367581 |
rs72661614 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0040000 |
0.0000000 |
0.0007987 |
37.0 |
70.0 |
49 |
780.76 |
5.86 |
46.94 |
0 |
46.94 |
0/1 |
| chr1 |
36397122 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
26 |
98.12 |
29.23 |
19.23 |
0 |
19.23 |
0/1 |
| chr1 |
36553673 |
rs399393 |
A |
G |
. |
PASS |
0.9123000 |
0.9395000 |
0.9990000 |
0.9115000 |
0.9397000 |
0.9387000 |
36.77 |
69.81 |
106 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36554442 |
rs11263852 |
G |
C |
. |
PASS |
0.4788000 |
0.6225000 |
0.5198000 |
0.9006000 |
0.8793000 |
0.6699000 |
37.0 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36563158 |
rs3738360 |
C |
A |
. |
PASS |
0.4365000 |
0.6110000 |
0.5218000 |
0.8976000 |
0.8763000 |
0.6564000 |
36.14 |
69.52 |
44 |
1000.00 |
0.22 |
95.45 |
0 |
95.45 |
1/1 |
| chr1 |
36565584 |
rs274753 |
C |
G |
. |
PASS |
0.9100000 |
0.9222000 |
0.9990000 |
0.8658000 |
0.9151000 |
0.9217000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36565617 |
rs274754 |
G |
A |
. |
PASS |
0.3268000 |
0.5202000 |
0.2609000 |
0.7753000 |
0.5941000 |
0.4826000 |
36.8 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36602943 |
rs2231318 |
C |
T |
. |
PASS |
0.8533000 |
0.8098000 |
0.7063000 |
0.7406000 |
0.6247000 |
0.7504000 |
36.38 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36616336 |
. |
GTG |
GCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
69.69 |
131 |
1000.00 |
1.64 |
41.22 |
0 |
100.00 |
0/1 |
| chr1 |
36616336 |
. |
GTG |
GCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
69.69 |
131 |
1000.00 |
1.15 |
58.78 |
0 |
100.00 |
0/1 |
| chr1 |
36641729 |
rs2296263 |
C |
T |
. |
PASS |
0.3238000 |
0.4467000 |
0.5020000 |
0.5567000 |
0.4438000 |
0.4469000 |
36.1 |
70.0 |
174 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36642420 |
rs475591 |
T |
C |
. |
PASS |
0.8896000 |
0.7810000 |
0.9137000 |
0.5755000 |
0.5521000 |
0.7504000 |
36.59 |
70.0 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36643700 |
rs141305015,rs3045695 |
GAGA |
G |
. |
PASS |
0.0030000 |
0.0836000 |
0.1964000 |
0.0497000 |
0.0133000 |
0.0645000 |
35.54 |
69.43 |
59 |
1000.00 |
0.29 |
59.32 |
0 |
59.32 |
0/1 |
| chr1 |
36644649 |
rs201674321 |
T |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0050000 |
0.0041000 |
0.0017971 |
35.91 |
70.0 |
28 |
330.71 |
20.78 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
36752433 |
rs6425977 |
C |
T |
. |
PASS |
0.5197000 |
0.8602000 |
0.9484000 |
0.8837000 |
0.8742000 |
0.7955000 |
36.67 |
69.92 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36762396 |
rs1566589 |
C |
T |
. |
PASS |
0.7617000 |
0.9741000 |
0.9702000 |
1.0000000 |
0.9928000 |
0.9261000 |
36.35 |
69.46 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36773405 |
rs35343437 |
T |
G |
. |
PASS |
0.1241000 |
0.5620000 |
0.7192000 |
0.4443000 |
0.3916000 |
0.4211000 |
36.66 |
70.0 |
106 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36773819 |
rs11263871 |
C |
G |
. |
PASS |
0.7617000 |
0.9741000 |
0.9742000 |
1.0000000 |
0.9939000 |
0.9271000 |
36.14 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36785270 |
rs2282431 |
C |
T |
. |
PASS |
0.3253000 |
0.4654000 |
0.6637000 |
0.2406000 |
0.2219000 |
0.3756000 |
37.0 |
70.0 |
29 |
339.71 |
5.64 |
37.93 |
0 |
37.93 |
0/1 |
| chr1 |
36788356 |
rs7536394 |
A |
G |
. |
PASS |
0.9372000 |
0.9856000 |
0.9712000 |
1.0000000 |
0.9928000 |
0.9742000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
36807481 |
rs3795498 |
C |
T |
. |
PASS |
0.1672000 |
0.1369000 |
0.1429000 |
0.2336000 |
0.2065000 |
0.1791000 |
36.7 |
70.0 |
84 |
1000.00 |
7.86 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
36810011 |
rs4653181 |
G |
A |
. |
PASS |
0.0250000 |
0.3761000 |
0.3194000 |
0.2435000 |
0.2198000 |
0.2149000 |
37.0 |
70.0 |
10 |
104.51 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
36884527 |
. |
C |
CA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
249.98 |
7.14 |
58.33 |
0 |
66.67 |
0/1 |
| chr1 |
36884530 |
rs72663495 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
265.57 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
36886117 |
rs2275477 |
C |
T |
. |
PASS |
0.3200000 |
0.1542000 |
0.2599000 |
0.2068000 |
0.2730000 |
0.2530000 |
36.68 |
70.0 |
68 |
1000.00 |
2.32 |
55.88 |
0 |
55.88 |
0/1 |
| chr1 |
36887702 |
rs2236565 |
C |
T |
. |
PASS |
0.8351000 |
0.5288000 |
0.6845000 |
0.6282000 |
0.7628000 |
0.7067000 |
36.37 |
70.0 |
39 |
631.77 |
3.51 |
48.72 |
0 |
48.72 |
0/1 |
| chr1 |
36898067 |
rs34409118 |
T |
C |
. |
PASS |
0.1604000 |
0.1369000 |
0.2599000 |
0.2048000 |
0.2730000 |
0.2081000 |
36.43 |
70.0 |
57 |
661.14 |
14.04 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
37335458 |
rs577094 |
A |
G |
. |
PASS |
0.8207000 |
0.9438000 |
0.9871000 |
0.9254000 |
0.9499000 |
0.9175000 |
36.08 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
37335485 |
rs509284 |
A |
G |
. |
PASS |
0.8207000 |
0.9438000 |
0.9871000 |
0.9254000 |
0.9499000 |
0.9175000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
37335494 |
rs577813 |
G |
T |
. |
PASS |
0.8207000 |
0.9438000 |
0.9871000 |
0.9254000 |
0.9499000 |
0.9175000 |
35.8 |
70.0 |
20 |
771.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
37513503 |
rs592520 |
G |
C |
. |
PASS |
0.6604000 |
0.3862000 |
0.5734000 |
0.4861000 |
0.5706000 |
0.5523000 |
36.17 |
69.31 |
92 |
873.79 |
19.42 |
31.52 |
0 |
31.52 |
0/1 |
| chr1 |
37948212 |
rs215205 |
C |
G |
. |
PASS |
0.5159000 |
0.1988000 |
0.0585000 |
0.3002000 |
0.5031000 |
0.3341000 |
37.0 |
70.0 |
34 |
487.60 |
3.92 |
44.12 |
0 |
44.12 |
0/1 |
| chr1 |
37959450 |
rs215210 |
T |
C |
. |
PASS |
0.4864000 |
0.8357000 |
0.9038000 |
0.8350000 |
0.6994000 |
0.7304000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
37959470 |
rs215211 |
C |
G |
. |
PASS |
0.5492000 |
0.8415000 |
0.9038000 |
0.8370000 |
0.6994000 |
0.7482000 |
37.0 |
69.93 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
37967649 |
rs41306601 |
C |
T |
. |
PASS |
0.0045000 |
0.0677000 |
0.0000000 |
0.0865000 |
0.0184000 |
0.0315000 |
37.0 |
70.0 |
35 |
822.90 |
4.22 |
65.71 |
0 |
65.71 |
0/1 |
| chr1 |
37967707 |
rs145062262,rs57320145 |
ATTGACAGAGAAGATACATG |
A |
. |
PASS |
0.3525000 |
0.4741000 |
0.4980000 |
0.4771000 |
0.4305000 |
0.4389000 |
34.31 |
70.0 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
37967774 |
rs215864 |
C |
A |
. |
PASS |
0.5257000 |
0.8429000 |
0.9018000 |
0.8370000 |
0.6513000 |
0.7324000 |
37.0 |
70.0 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38006359 |
rs2174769 |
A |
G |
. |
PASS |
0.4183000 |
0.8386000 |
0.9702000 |
0.8340000 |
0.6789000 |
0.7220000 |
36.53 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38019747 |
rs2273013 |
C |
T |
. |
PASS |
0.0643000 |
0.2896000 |
0.3938000 |
0.2177000 |
0.2515000 |
0.2292000 |
37.0 |
70.0 |
87 |
1000.00 |
9.26 |
42.53 |
0 |
42.53 |
0/1 |
| chr1 |
38022452 |
rs2273014 |
C |
A |
. |
PASS |
0.1952000 |
0.5562000 |
0.5675000 |
0.4682000 |
0.3262000 |
0.4006000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38023316 |
rs11749 |
C |
T |
. |
PASS |
0.0681000 |
0.2046000 |
0.3502000 |
0.2535000 |
0.1871000 |
0.2043000 |
36.6 |
70.0 |
91 |
1000.00 |
5.57 |
65.93 |
0 |
65.93 |
0/1 |
| chr1 |
38030696 |
rs6619 |
T |
C |
. |
PASS |
0.2247000 |
0.5620000 |
0.5694000 |
0.4692000 |
0.3323000 |
0.4109000 |
36.57 |
70.0 |
53 |
965.56 |
4.45 |
52.83 |
0 |
52.83 |
0/1 |
| chr1 |
38046920 |
rs2360010 |
G |
T |
. |
PASS |
0.4448000 |
0.8415000 |
0.9712000 |
0.8380000 |
0.6738000 |
0.7294000 |
36.0 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38049373 |
rs3753372 |
C |
T |
. |
PASS |
0.2254000 |
0.5634000 |
0.5694000 |
0.4692000 |
0.3313000 |
0.4111000 |
33.4 |
70.0 |
24 |
276.97 |
18.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
38049552 |
rs6426024 |
C |
G |
. |
PASS |
0.4523000 |
0.8444000 |
0.9712000 |
0.8340000 |
0.6728000 |
0.7308000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38078300 |
rs4652964 |
A |
G |
. |
PASS |
0.2148000 |
0.5937000 |
0.6766000 |
0.5308000 |
0.4448000 |
0.4687000 |
37.0 |
70.0 |
10 |
229.82 |
0.00 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
38078630 |
rs55852308 |
A |
T |
. |
PASS |
0.0666000 |
0.2118000 |
0.2808000 |
0.2545000 |
0.1973000 |
0.1931000 |
35.8 |
70.0 |
57 |
1000.00 |
5.96 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
38082121 |
. |
TGC |
TAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.62 |
70.0 |
69 |
872.38 |
1.45 |
37.68 |
0 |
37.68 |
0/1 |
| chr1 |
38148765 |
rs684260 |
A |
G |
. |
PASS |
0.8343000 |
0.7954000 |
0.9514000 |
0.7654000 |
0.7822000 |
0.8285000 |
35.82 |
69.67 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38149193 |
rs686083 |
C |
T |
. |
PASS |
0.3911000 |
0.1614000 |
0.0288000 |
0.2694000 |
0.1483000 |
0.2145000 |
35.5 |
70.0 |
17 |
238.51 |
20.59 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
38155265 |
rs586252 |
G |
C |
. |
PASS |
0.3911000 |
0.1614000 |
0.0288000 |
0.2694000 |
0.1483000 |
0.2145000 |
36.25 |
70.0 |
32 |
523.38 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
38156190 |
rs679742 |
C |
G |
. |
PASS |
0.2148000 |
0.1383000 |
0.0288000 |
0.2684000 |
0.1421000 |
0.1633000 |
37.0 |
70.0 |
15 |
210.62 |
1.90 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
38161694 |
rs615530 |
A |
G |
. |
PASS |
0.6891000 |
0.5245000 |
0.7034000 |
0.4414000 |
0.5000000 |
0.5825000 |
35.63 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38164724 |
rs557290 |
C |
G |
. |
PASS |
0.5325000 |
0.5058000 |
0.7034000 |
0.4404000 |
0.5000000 |
0.5383000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38166022 |
rs513826 |
T |
C |
. |
PASS |
0.5325000 |
0.5058000 |
0.7034000 |
0.4404000 |
0.5000000 |
0.5383000 |
34.82 |
68.18 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38167361 |
rs34342214 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
13 |
79.33 |
3.85 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
38173983 |
rs368589115,rs145033890 |
TTTC |
T |
. |
PASS |
0.2799000 |
0.3660000 |
0.6746000 |
0.1750000 |
0.3517000 |
0.3642000 |
37.0 |
70.0 |
70 |
958.61 |
4.76 |
42.86 |
0 |
44.29 |
0/1 |
| chr1 |
38184316 |
rs609437 |
T |
C |
. |
PASS |
0.2352000 |
0.1369000 |
0.0288000 |
0.2644000 |
0.1493000 |
0.1691000 |
36.71 |
69.52 |
101 |
1000.00 |
3.02 |
41.58 |
0 |
41.58 |
0/1 |
| chr1 |
38185409 |
rs900677 |
C |
G |
. |
PASS |
0.1770000 |
0.0620000 |
0.0278000 |
0.1093000 |
0.0399000 |
0.0907000 |
37.0 |
70.0 |
17 |
246.37 |
8.82 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
38185647 |
rs2170809 |
G |
A |
. |
PASS |
0.0567000 |
0.0476000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0555000 |
36.67 |
70.0 |
78 |
1000.00 |
3.42 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
38185723 |
rs6670599 |
C |
T |
. |
PASS |
0.0174000 |
0.0447000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0447000 |
36.45 |
70.0 |
88 |
1000.00 |
2.27 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
38186206 |
rs12726343 |
C |
G |
. |
PASS |
0.0174000 |
0.0447000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0447000 |
36.56 |
70.0 |
49 |
931.68 |
1.36 |
55.10 |
0 |
55.10 |
0/1 |
| chr1 |
38187173 |
rs17511088 |
G |
A |
. |
PASS |
0.0174000 |
0.0447000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0447000 |
34.6 |
70.0 |
10 |
134.27 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
38187447 |
rs579908 |
A |
G |
. |
PASS |
0.3048000 |
0.1556000 |
0.0288000 |
0.2634000 |
0.1431000 |
0.1887000 |
36.25 |
70.0 |
62 |
1000.00 |
0.20 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
38187453 |
rs33970734 |
G |
A |
. |
PASS |
0.0174000 |
0.0447000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0447000 |
36.25 |
70.0 |
60 |
1000.00 |
3.75 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
38188697 |
rs16824420 |
T |
C |
. |
PASS |
0.0598000 |
0.0490000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0565000 |
37.0 |
70.0 |
30 |
462.02 |
20.95 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
38188740 |
rs12405650 |
C |
T |
. |
PASS |
0.0174000 |
0.0476000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0451000 |
36.6 |
70.0 |
59 |
1000.00 |
8.47 |
50.85 |
0 |
50.85 |
0/1 |
| chr1 |
38188768 |
rs17464871 |
C |
T |
. |
PASS |
0.0174000 |
0.0447000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0447000 |
35.91 |
70.0 |
62 |
1000.00 |
9.48 |
53.23 |
0 |
53.23 |
0/1 |
| chr1 |
38188787 |
rs17511304 |
A |
G |
. |
PASS |
0.0174000 |
0.0447000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0447000 |
36.67 |
70.0 |
62 |
1000.00 |
5.56 |
58.06 |
0 |
58.06 |
0/1 |
| chr1 |
38188880 |
rs11582856 |
C |
T |
. |
PASS |
0.0174000 |
0.0447000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0447000 |
36.08 |
70.0 |
27 |
417.27 |
2.28 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
38188934 |
rs11577529 |
T |
C |
. |
PASS |
0.0174000 |
0.0447000 |
0.0278000 |
0.1083000 |
0.0337000 |
0.0447000 |
37.0 |
70.0 |
42 |
634.75 |
0.50 |
45.24 |
0 |
45.24 |
0/1 |
| chr1 |
38219761 |
rs681890 |
C |
T |
. |
PASS |
0.3298000 |
0.4006000 |
0.4206000 |
0.3380000 |
0.4131000 |
0.3758000 |
37.0 |
70.0 |
12 |
182.03 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
38220109 |
rs11584465 |
G |
T |
. |
PASS |
0.0106000 |
0.2507000 |
0.1746000 |
0.2584000 |
0.1830000 |
0.1603000 |
37.0 |
67.78 |
18 |
285.13 |
11.11 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
38226964 |
rs55695553 |
C |
T |
. |
PASS |
0.1157000 |
0.2493000 |
0.2212000 |
0.1183000 |
0.2648000 |
0.1851000 |
36.48 |
68.26 |
41 |
792.85 |
0.85 |
56.10 |
0 |
56.10 |
0/1 |
| chr1 |
38227086 |
rs4653328 |
A |
T |
. |
PASS |
0.4402000 |
0.3012000 |
0.4831000 |
0.2833000 |
0.2106000 |
0.3532000 |
36.35 |
70.0 |
105 |
1000.00 |
7.46 |
35.24 |
0 |
35.24 |
0/1 |
| chr1 |
38228216 |
rs605359 |
A |
G |
. |
PASS |
0.8903000 |
0.8963000 |
0.9960000 |
0.8161000 |
0.8599000 |
0.8916000 |
35.76 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38301220 |
rs28378413 |
G |
A |
. |
PASS |
0.0076000 |
0.2752000 |
0.2063000 |
0.2753000 |
0.1881000 |
0.1737000 |
37.0 |
70.0 |
11 |
226.81 |
0.00 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
38301250 |
rs3912368 |
A |
G |
. |
PASS |
0.2950000 |
0.6023000 |
0.4792000 |
0.7266000 |
0.6155000 |
0.5240000 |
37.0 |
70.0 |
23 |
441.32 |
17.39 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
38301476 |
rs3762359 |
G |
A |
. |
PASS |
0.2950000 |
0.5980000 |
0.4802000 |
0.7247000 |
0.6155000 |
0.5232000 |
37.0 |
70.0 |
44 |
795.81 |
11.46 |
52.27 |
0 |
52.27 |
0/1 |
| chr1 |
38327935 |
rs140670679 |
CAG |
C |
. |
PASS |
0.0076000 |
0.2752000 |
0.2054000 |
0.2753000 |
0.1861000 |
0.1731000 |
36.7 |
70.0 |
39 |
640.26 |
6.92 |
51.28 |
0 |
51.28 |
0/1 |
| chr1 |
38327982 |
rs3843 |
G |
T |
. |
PASS |
0.3011000 |
0.6009000 |
0.4802000 |
0.7266000 |
0.6155000 |
0.5256000 |
35.91 |
70.0 |
73 |
1000.00 |
6.56 |
45.21 |
0 |
45.21 |
0/1 |
| chr1 |
38332057 |
. |
TTC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.23 |
70.0 |
47 |
1000.00 |
8.95 |
82.98 |
0 |
82.98 |
0/1 |
| chr1 |
38332078 |
rs4653333 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.94 |
70.0 |
48 |
1000.00 |
18.41 |
64.58 |
0 |
70.83 |
0/1 |
| chr1 |
38334316 |
. |
TTC |
TAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.18 |
69.09 |
51 |
660.05 |
0.53 |
43.14 |
0 |
43.14 |
0/1 |
| chr1 |
38338795 |
rs11488569 |
A |
G |
. |
PASS |
0.2980000 |
0.5994000 |
0.4752000 |
0.7266000 |
0.6155000 |
0.5236000 |
37.0 |
70.0 |
34 |
533.52 |
5.15 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
38345896 |
rs2306427 |
A |
C |
. |
PASS |
0.2995000 |
0.5951000 |
0.4752000 |
0.7247000 |
0.6155000 |
0.5230000 |
37.0 |
70.0 |
47 |
532.01 |
33.79 |
36.17 |
0 |
36.17 |
0/1 |
| chr1 |
38397341 |
rs34655914 |
G |
A |
. |
PASS |
0.0840000 |
0.4366000 |
0.3185000 |
0.5825000 |
0.4673000 |
0.3550000 |
35.8 |
70.0 |
60 |
1000.00 |
3.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
38397369 |
rs35267671 |
C |
T |
. |
PASS |
0.0840000 |
0.4366000 |
0.3185000 |
0.5835000 |
0.4673000 |
0.3552000 |
37.0 |
70.0 |
75 |
1000.00 |
17.42 |
42.67 |
0 |
42.67 |
0/1 |
| chr1 |
38411350 |
rs11485595 |
C |
T |
. |
PASS |
0.0726000 |
0.3530000 |
0.3155000 |
0.4254000 |
0.3252000 |
0.2806000 |
37.0 |
70.0 |
13 |
95.48 |
30.77 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
38411445 |
rs871524 |
G |
A |
. |
PASS |
0.0431000 |
0.2262000 |
0.2401000 |
0.3181000 |
0.2403000 |
0.2019000 |
36.71 |
70.0 |
78 |
1000.00 |
7.57 |
52.56 |
0 |
52.56 |
0/1 |
| chr1 |
38423853 |
rs9293 |
G |
C |
. |
PASS |
0.9766000 |
0.9121000 |
1.0000000 |
0.8479000 |
0.8517000 |
0.9221000 |
36.5 |
69.81 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38425724 |
rs17531342 |
T |
C |
. |
PASS |
0.9766000 |
0.9121000 |
1.0000000 |
0.8469000 |
0.8569000 |
0.9229000 |
36.11 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38425895 |
rs28675056 |
T |
C |
. |
PASS |
0.9766000 |
0.9121000 |
1.0000000 |
0.8469000 |
0.8569000 |
0.9229000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38442547 |
rs10890216 |
G |
A |
. |
PASS |
0.9735000 |
0.9121000 |
1.0000000 |
0.8489000 |
0.8517000 |
0.9215000 |
36.38 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38444333 |
rs6660034 |
A |
G |
. |
PASS |
0.9735000 |
0.9121000 |
1.0000000 |
0.8489000 |
0.8517000 |
0.9215000 |
36.13 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38444749 |
rs7555461 |
T |
C |
. |
PASS |
0.3964000 |
0.5072000 |
0.6825000 |
0.4215000 |
0.5245000 |
0.4994000 |
37.0 |
70.0 |
83 |
1000.00 |
5.74 |
50.60 |
0 |
50.60 |
0/1 |
| chr1 |
38449910 |
rs11210870 |
T |
C |
. |
PASS |
0.2511000 |
0.3703000 |
0.2421000 |
0.2753000 |
0.3650000 |
0.2929000 |
37.0 |
70.0 |
66 |
1000.00 |
3.03 |
51.52 |
0 |
51.52 |
0/1 |
| chr1 |
38450367 |
rs6680796 |
A |
G |
. |
PASS |
0.9766000 |
0.9107000 |
1.0000000 |
0.8489000 |
0.8579000 |
0.9233000 |
35.93 |
69.7 |
67 |
1000.00 |
1.45 |
98.51 |
0 |
100.00 |
1/1 |
| chr1 |
38455389 |
rs3935867 |
C |
T |
. |
PASS |
0.9191000 |
0.8977000 |
0.9980000 |
0.8479000 |
0.8507000 |
0.9044000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38463504 |
rs7366048 |
C |
T |
. |
PASS |
0.6861000 |
0.5202000 |
0.6756000 |
0.4205000 |
0.5225000 |
0.5757000 |
37.0 |
70.0 |
77 |
1000.00 |
9.93 |
44.16 |
0 |
44.16 |
0/1 |
| chr1 |
38464639 |
rs4570384 |
C |
G |
. |
PASS |
0.9924000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9980000 |
37.0 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38719784 |
rs12119990 |
C |
T |
. |
PASS |
0.4206000 |
0.4049000 |
0.5883000 |
0.3827000 |
0.3569000 |
0.4321000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38719919 |
rs928158 |
A |
G |
. |
PASS |
0.4198000 |
0.4049000 |
0.5883000 |
0.3827000 |
0.3507000 |
0.4307000 |
36.59 |
70.0 |
148 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
38961037 |
rs2992443 |
C |
T |
. |
PASS |
0.3661000 |
0.6859000 |
0.6409000 |
0.6690000 |
0.6472000 |
0.5815000 |
36.31 |
70.0 |
82 |
1000.00 |
2.02 |
42.68 |
0 |
42.68 |
0/1 |
| chr1 |
39174617 |
rs115579091 |
G |
A |
. |
PASS |
0.0015000 |
0.0101000 |
0.0000000 |
0.0278000 |
0.0317000 |
0.0135780 |
36.14 |
69.93 |
60 |
932.48 |
8.57 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
39175496 |
rs72656176 |
C |
T |
. |
PASS |
0.0469000 |
0.0043000 |
0.0238000 |
0.0089000 |
0.0164000 |
0.0228000 |
36.25 |
68.5 |
36 |
515.49 |
26.39 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
39176229 |
rs56330436 |
G |
A |
. |
PASS |
0.0469000 |
0.0043000 |
0.0238000 |
0.0089000 |
0.0164000 |
0.0228000 |
37.0 |
69.27 |
24 |
354.77 |
7.58 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
39280759 |
rs112189577,rs377380360,rs66878151 |
AAGAG |
A |
. |
PASS |
0.3623000 |
0.3458000 |
0.5536000 |
0.4284000 |
0.4540000 |
0.4297000 |
34.33 |
70.0 |
95 |
782.25 |
3.51 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
39305403 |
rs17499125 |
C |
T |
. |
PASS |
0.0061000 |
0.1066000 |
0.1329000 |
0.2137000 |
0.0818000 |
0.1020000 |
35.71 |
70.0 |
49 |
953.60 |
13.27 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
39325063 |
rs1925678 |
T |
C |
. |
PASS |
0.1528000 |
0.5922000 |
0.4048000 |
0.6660000 |
0.4121000 |
0.4181000 |
36.62 |
69.68 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39330399 |
rs3828041 |
G |
A |
. |
PASS |
0.0061000 |
0.1066000 |
0.1329000 |
0.2127000 |
0.0818000 |
0.1018000 |
35.67 |
70.0 |
35 |
590.03 |
13.97 |
51.43 |
0 |
51.43 |
0/1 |
| chr1 |
39340282 |
rs880303 |
C |
T |
. |
PASS |
0.1452000 |
0.4813000 |
0.2718000 |
0.4523000 |
0.3088000 |
0.3109000 |
36.2 |
70.0 |
84 |
1000.00 |
0.48 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
39340862 |
rs874243 |
A |
G |
. |
PASS |
0.0061000 |
0.1167000 |
0.1319000 |
0.2177000 |
0.0798000 |
0.1036000 |
37.0 |
69.29 |
62 |
950.49 |
5.76 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
39352271 |
rs2147914 |
G |
T |
. |
PASS |
0.1452000 |
0.4798000 |
0.2718000 |
0.4513000 |
0.3088000 |
0.3105000 |
36.14 |
70.0 |
65 |
913.28 |
7.69 |
43.08 |
0 |
43.08 |
0/1 |
| chr1 |
39361569 |
rs12085567 |
G |
A |
. |
PASS |
0.0893000 |
0.1210000 |
0.1300000 |
0.2177000 |
0.0798000 |
0.1258000 |
37.0 |
70.0 |
12 |
182.03 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
39361615 |
rs9438984 |
G |
A |
. |
PASS |
0.1452000 |
0.4798000 |
0.2728000 |
0.4513000 |
0.3078000 |
0.3105000 |
36.29 |
70.0 |
25 |
590.37 |
9.41 |
68.00 |
0 |
68.00 |
0/1 |
| chr1 |
39385086 |
rs7522863 |
A |
C |
. |
PASS |
0.8018000 |
0.9035000 |
0.7331000 |
0.9513000 |
0.8640000 |
0.8442000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39457006 |
rs12043492 |
C |
T |
. |
PASS |
0.6248000 |
0.5865000 |
0.7589000 |
0.4414000 |
0.7045000 |
0.6252000 |
37.0 |
70.0 |
14 |
134.24 |
31.43 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
39457332 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.2 |
70.0 |
18 |
94.04 |
111.11 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
39457335 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
88.33 |
128.57 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
39550204 |
rs72660075 |
C |
G |
. |
PASS |
0.0159000 |
0.0101000 |
0.0000000 |
0.0089000 |
0.0000000 |
0.0073882 |
37.0 |
70.0 |
14 |
171.86 |
23.81 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
39550210 |
rs260972 |
C |
T |
. |
PASS |
0.4062000 |
0.9323000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.8335000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39748921 |
rs2275188 |
G |
A |
. |
PASS |
0.2685000 |
0.6657000 |
0.6498000 |
0.7167000 |
0.7996000 |
0.5940000 |
36.39 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39763242 |
rs2275187 |
G |
A |
. |
PASS |
0.2700000 |
0.6671000 |
0.5982000 |
0.7197000 |
0.7945000 |
0.5839000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39766055 |
rs2275186 |
C |
T |
. |
PASS |
0.2693000 |
0.6671000 |
0.6696000 |
0.7187000 |
0.7996000 |
0.5988000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39852990 |
rs72661966 |
T |
C |
. |
PASS |
0.0076000 |
0.0043000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0031949 |
36.76 |
70.0 |
87 |
1000.00 |
3.45 |
57.47 |
0 |
57.47 |
0/1 |
| chr1 |
39929240 |
rs7554206 |
T |
C |
. |
PASS |
0.5151000 |
0.6916000 |
0.6944000 |
0.7187000 |
0.8006000 |
0.6723000 |
36.04 |
70.0 |
25 |
984.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39957913 |
rs4660269 |
A |
G |
. |
PASS |
0.2897000 |
0.8069000 |
0.6825000 |
0.8887000 |
0.8609000 |
0.6723000 |
36.82 |
68.62 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39958080 |
rs10888798 |
C |
G |
. |
PASS |
0.2769000 |
0.5893000 |
0.5556000 |
0.6551000 |
0.7883000 |
0.5521000 |
37.0 |
69.0 |
18 |
712.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39976930 |
rs201515760 |
C |
T |
. |
PASS |
0.4523000 |
0.1340000 |
0.3135000 |
0.0338000 |
0.0757000 |
0.2226000 |
37.0 |
56.29 |
38 |
437.93 |
25.56 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
39976974 |
rs202230393 |
C |
T |
. |
PASS |
0.4297000 |
0.0461000 |
0.0000000 |
0.0070000 |
0.0358000 |
0.1282000 |
36.25 |
51.69 |
48 |
479.37 |
8.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
39977364 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
52.82 |
78 |
588.92 |
5.86 |
26.92 |
0 |
28.21 |
0/1 |
| chr1 |
39977575 |
rs200415763 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.43 |
33 |
452.98 |
9.52 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
39988084 |
rs6525 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.18 |
108 |
561.40 |
25.42 |
20.37 |
0 |
20.37 |
0/1 |
| chr1 |
39988318 |
rs139401553 |
T |
TTTG |
. |
PASS |
0.2549000 |
0.5259000 |
0.5198000 |
0.4940000 |
0.7249000 |
0.4856000 |
36.43 |
66.29 |
12 |
240.98 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
39988799 |
rs41270825 |
G |
A |
. |
PASS |
0.0023000 |
0.0303000 |
0.0000000 |
0.0497000 |
0.0552000 |
0.0256000 |
37.0 |
68.48 |
86 |
1000.00 |
2.55 |
48.84 |
0 |
48.84 |
0/1 |
| chr1 |
39989186 |
rs710911 |
T |
C |
. |
PASS |
0.8835000 |
0.9827000 |
1.0000000 |
0.9960000 |
1.0000000 |
0.9661000 |
36.29 |
69.12 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
39989197 |
rs710912 |
C |
T |
. |
PASS |
0.1929000 |
0.0202000 |
0.0000000 |
0.0070000 |
0.0348000 |
0.0619000 |
37.0 |
69.12 |
21 |
238.48 |
22.62 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
39989327 |
rs1727098 |
C |
T |
. |
PASS |
0.2685000 |
0.5490000 |
0.5526000 |
0.5328000 |
0.7771000 |
0.5170000 |
36.33 |
69.67 |
29 |
620.10 |
4.60 |
62.07 |
0 |
62.07 |
0/1 |
| chr1 |
39991473 |
rs35048605 |
CAG |
CCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.84 |
68.3 |
168 |
1000.00 |
3.20 |
45.24 |
0 |
45.24 |
0/1 |
| chr1 |
39991588 |
rs3738676 |
G |
T |
. |
PASS |
0.3601000 |
0.3617000 |
0.4405000 |
0.3678000 |
0.1585000 |
0.3387000 |
36.0 |
70.0 |
22 |
386.40 |
7.58 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
40030048 |
rs72663531 |
T |
G |
. |
PASS |
0.0000000 |
0.0072000 |
0.0000000 |
0.0070000 |
0.0041000 |
0.0031949 |
35.86 |
70.0 |
35 |
711.19 |
5.71 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
40035182 |
rs9438926 |
A |
G |
. |
PASS |
0.2436000 |
0.0317000 |
0.0000000 |
0.0070000 |
0.0358000 |
0.0771000 |
37.0 |
70.0 |
22 |
277.25 |
14.14 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
40092089 |
rs2695320 |
T |
C |
. |
PASS |
0.8888000 |
0.9712000 |
0.9990000 |
0.9791000 |
0.9571000 |
0.9539000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40098328 |
rs784625 |
T |
C |
. |
PASS |
1.0000000 |
0.9942000 |
0.9990000 |
0.9891000 |
0.9611000 |
0.9892000 |
37.0 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40131089 |
rs734497 |
G |
T |
. |
PASS |
0.0053000 |
0.0793000 |
0.0079000 |
0.1690000 |
0.2239000 |
0.0917000 |
35.0 |
70.0 |
11 |
168.89 |
0.00 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
40149515 |
rs784633 |
A |
G |
. |
PASS |
0.9191000 |
0.8256000 |
0.8165000 |
0.8250000 |
0.8661000 |
0.8562000 |
37.0 |
68.89 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40149642 |
rs784634 |
G |
T |
. |
PASS |
0.9191000 |
0.8256000 |
0.8165000 |
0.8250000 |
0.8661000 |
0.8562000 |
36.84 |
69.73 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40149870 |
rs113763288 |
C |
G |
. |
PASS |
0.9191000 |
0.8256000 |
0.8175000 |
0.8250000 |
0.8661000 |
0.8564000 |
35.15 |
70.0 |
14 |
402.52 |
9.52 |
85.71 |
0 |
92.86 |
0/1 |
| chr1 |
40149875 |
rs113459798 |
C |
T |
. |
PASS |
0.4826000 |
0.2406000 |
0.2698000 |
0.3519000 |
0.3599000 |
0.3560000 |
34.23 |
70.0 |
14 |
400.87 |
7.14 |
85.71 |
0 |
92.86 |
1/1 |
| chr1 |
40150156 |
rs9662128 |
G |
A |
. |
PASS |
0.4811000 |
0.2406000 |
0.2698000 |
0.3519000 |
0.3609000 |
0.3558000 |
36.68 |
70.0 |
112 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40150370 |
rs2746058 |
C |
T |
. |
PASS |
0.9191000 |
0.8256000 |
0.8165000 |
0.8241000 |
0.8661000 |
0.8560000 |
35.5 |
70.0 |
16 |
608.82 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40183922 |
rs481423 |
C |
T |
. |
PASS |
0.3729000 |
0.2219000 |
0.5079000 |
0.1948000 |
0.2689000 |
0.3231000 |
36.25 |
70.0 |
31 |
530.54 |
9.68 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
40207169 |
rs497333 |
T |
G |
. |
PASS |
0.5446000 |
0.5375000 |
0.4633000 |
0.6809000 |
0.6401000 |
0.5733000 |
37.0 |
70.0 |
46 |
743.87 |
10.67 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
40214525 |
rs7520588 |
T |
A |
. |
PASS |
0.1936000 |
0.2824000 |
0.2470000 |
0.3569000 |
0.4141000 |
0.2925000 |
37.0 |
68.95 |
33 |
657.69 |
22.01 |
57.58 |
0 |
57.58 |
0/1 |
| chr1 |
40218695 |
rs72665281 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.31 |
69.62 |
121 |
1000.00 |
4.13 |
42.98 |
0 |
42.98 |
0/1 |
| chr1 |
40219065 |
rs1046988 |
C |
T |
. |
PASS |
0.1679000 |
0.2810000 |
0.2312000 |
0.3559000 |
0.4110000 |
0.2815000 |
37.0 |
70.0 |
60 |
1000.00 |
3.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
40226046 |
rs12094291 |
G |
A |
. |
PASS |
0.1800000 |
0.2781000 |
0.2470000 |
0.3569000 |
0.4121000 |
0.2879000 |
36.54 |
70.0 |
113 |
1000.00 |
4.12 |
46.02 |
0 |
46.02 |
0/1 |
| chr1 |
40229297 |
rs71060328 |
A |
AC |
. |
PASS |
0.3306000 |
0.3818000 |
0.3204000 |
0.4443000 |
0.4233000 |
0.3766000 |
37.0 |
50.25 |
22 |
136.34 |
36.36 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
40229319 |
rs493473 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.54 |
38 |
396.17 |
32.39 |
34.21 |
0 |
34.21 |
0/1 |
| chr1 |
40229368 |
rs2463260 |
A |
G |
. |
PASS |
0.2625000 |
0.3559000 |
0.3075000 |
0.4473000 |
0.4888000 |
0.3658000 |
36.4 |
55.95 |
92 |
1000.00 |
2.17 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
40235331 |
rs144237350 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.33 |
50 |
192.97 |
49.78 |
18.00 |
0 |
18.00 |
0/1 |
| chr1 |
40235448 |
rs150795467 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.07 |
111 |
259.98 |
21.62 |
13.51 |
0 |
13.51 |
0/1 |
| chr1 |
40235489 |
rs77857664 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.63 |
73 |
541.45 |
16.73 |
26.03 |
0 |
26.03 |
0/1 |
| chr1 |
40236973 |
rs147759616 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
58.11 |
62 |
546.38 |
11.88 |
30.65 |
0 |
30.65 |
0/1 |
| chr1 |
40237069 |
rs369113959 |
T |
C |
. |
PASS |
0.4531000 |
0.2882000 |
0.3403000 |
0.3101000 |
0.2372000 |
0.3367000 |
37.0 |
44.0 |
10 |
62.74 |
0.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
40240582 |
rs200876716 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
51.33 |
35 |
100.80 |
20.00 |
17.14 |
0 |
17.14 |
0/1 |
| chr1 |
40240626 |
rs201381914 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.67 |
38 |
103.78 |
31.58 |
15.79 |
0 |
15.79 |
0/1 |
| chr1 |
40240843 |
rs34047126 |
C |
T |
. |
PASS |
0.0673000 |
0.1023000 |
0.0317000 |
0.1759000 |
0.2270000 |
0.1180000 |
37.0 |
65.5 |
18 |
247.51 |
0.00 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
40308397 |
rs3768310 |
G |
A |
. |
PASS |
0.6150000 |
0.4107000 |
0.5933000 |
0.3946000 |
0.4632000 |
0.5084000 |
35.74 |
70.0 |
19 |
734.13 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40313849 |
rs1333742 |
T |
C |
. |
PASS |
0.0098000 |
0.1124000 |
0.0069000 |
0.1928000 |
0.2127000 |
0.0998000 |
37.0 |
70.0 |
11 |
143.27 |
3.64 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
40319587 |
rs2294814 |
A |
C |
. |
PASS |
0.9039000 |
0.4654000 |
0.5933000 |
0.4423000 |
0.4826000 |
0.6056000 |
35.96 |
70.0 |
23 |
897.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40349131 |
rs3845570 |
G |
A |
. |
PASS |
0.6157000 |
0.4107000 |
0.5933000 |
0.3946000 |
0.4632000 |
0.5086000 |
36.33 |
70.0 |
107 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40363054 |
rs3134614 |
G |
C |
. |
PASS |
0.9962000 |
0.9035000 |
1.0000000 |
0.8917000 |
0.8558000 |
0.9357000 |
36.69 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40367592 |
rs804719 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40428325 |
rs55730353 |
G |
A |
. |
PASS |
0.0053000 |
0.0014000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0021965 |
37.0 |
65.0 |
17 |
83.44 |
8.82 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
40428328 |
rs3131700 |
G |
T |
. |
PASS |
0.3185000 |
0.6297000 |
0.9583000 |
0.5268000 |
0.7812000 |
0.6226000 |
37.0 |
70.0 |
17 |
455.22 |
2.71 |
76.47 |
0 |
76.47 |
0/1 |
| chr1 |
40428587 |
rs3131699 |
G |
T |
. |
PASS |
0.1120000 |
0.3963000 |
0.5317000 |
0.2863000 |
0.4826000 |
0.3433000 |
36.4 |
68.1 |
63 |
1000.00 |
1.59 |
63.49 |
0 |
63.49 |
0/1 |
| chr1 |
40533266 |
rs11207440 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.02 |
69.56 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40533287 |
rs6665926 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.21 |
69.4 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40533315 |
rs6665933 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.49 |
68.11 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40533320 |
rs6665936 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.82 |
67.84 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40533326 |
rs6665937 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.55 |
67.92 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40533347 |
rs6665944 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.71 |
67.71 |
65 |
1000.00 |
0.93 |
96.92 |
0 |
100.00 |
1/1 |
| chr1 |
40536074 |
rs58190778 |
C |
CT |
. |
PASS |
0.7179000 |
0.7522000 |
0.7411000 |
0.7684000 |
0.7137000 |
0.7366000 |
37.0 |
70.0 |
25 |
993.19 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40556922 |
rs3122439 |
T |
C |
. |
PASS |
0.9796000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9942000 |
35.67 |
70.0 |
18 |
692.36 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40705427 |
rs34141181 |
C |
G |
. |
PASS |
0.0144000 |
0.0375000 |
0.0298000 |
0.0646000 |
0.1687000 |
0.0609000 |
35.43 |
69.13 |
45 |
752.63 |
19.52 |
51.11 |
0 |
51.11 |
0/1 |
| chr1 |
40705726 |
rs10889205 |
A |
T |
. |
PASS |
0.2542000 |
0.1671000 |
0.0625000 |
0.1819000 |
0.0460000 |
0.1484000 |
36.43 |
70.0 |
45 |
693.10 |
16.51 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
40733658 |
rs7516571 |
A |
G |
. |
PASS |
0.2708000 |
0.1859000 |
0.2212000 |
0.2296000 |
0.1779000 |
0.2226000 |
37.0 |
70.0 |
17 |
125.21 |
0.00 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
40737516 |
rs6677717 |
T |
G |
. |
PASS |
1.0000000 |
0.9971000 |
1.0000000 |
0.9801000 |
0.9877000 |
0.9932000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40773123 |
rs2228567 |
G |
C |
. |
PASS |
0.0514000 |
0.0836000 |
0.1052000 |
0.0974000 |
0.0961000 |
0.0847000 |
36.67 |
70.0 |
70 |
1000.00 |
2.70 |
51.43 |
0 |
51.43 |
0/1 |
| chr1 |
40830626 |
rs3013460 |
A |
G |
. |
PASS |
0.7678000 |
0.5605000 |
0.5923000 |
0.4602000 |
0.5204000 |
0.5936000 |
37.0 |
69.94 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40840249 |
rs200385638 |
T |
TTGCG |
. |
PASS |
0.5129000 |
0.3977000 |
0.4593000 |
0.3658000 |
0.3865000 |
0.4319000 |
35.88 |
70.0 |
94 |
810.33 |
9.17 |
30.85 |
0 |
30.85 |
0/1 |
| chr1 |
40840268 |
rs72258841 |
CGT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.68 |
70.0 |
111 |
75.07 |
4.41 |
54.05 |
0 |
63.06 |
0/1 |
| chr1 |
40840274 |
. |
T |
C |
. |
PASS |
0.1626000 |
0.0663000 |
0.2143000 |
0.0905000 |
0.1493000 |
0.1426000 |
35.69 |
70.0 |
107 |
1000.00 |
11.84 |
42.06 |
0 |
51.40 |
0/1 |
| chr1 |
40840296 |
rs4561032 |
T |
A |
. |
PASS |
0.4629000 |
0.3761000 |
0.4772000 |
0.4573000 |
0.4601000 |
0.4521000 |
36.09 |
70.0 |
125 |
1000.00 |
1.67 |
87.20 |
0 |
89.60 |
0/1 |
| chr1 |
40840353 |
rs1003710 |
A |
G |
. |
PASS |
0.7118000 |
0.5576000 |
0.5843000 |
0.4583000 |
0.5194000 |
0.5763000 |
36.08 |
70.0 |
137 |
1000.00 |
3.65 |
56.93 |
0 |
56.93 |
0/1 |
| chr1 |
40859213 |
rs377617377,rs60488304 |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
30.68 |
70.0 |
20 |
586.81 |
5.26 |
95.00 |
0 |
95.00 |
1/1 |
| chr1 |
40872623 |
rs2982510 |
C |
T |
. |
PASS |
0.5303000 |
0.2003000 |
0.2857000 |
0.2396000 |
0.2239000 |
0.3171000 |
37.0 |
70.0 |
11 |
226.81 |
0.00 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
40879808 |
rs209605 |
G |
T |
. |
PASS |
0.9735000 |
0.8199000 |
0.7708000 |
0.8638000 |
0.8292000 |
0.8612000 |
36.17 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40879952 |
rs2294752 |
T |
G |
. |
PASS |
0.5378000 |
0.2003000 |
0.2867000 |
0.2396000 |
0.2239000 |
0.3193000 |
36.27 |
70.0 |
73 |
1000.00 |
5.56 |
45.21 |
0 |
45.21 |
0/1 |
| chr1 |
40880804 |
rs2294755 |
C |
T |
. |
PASS |
0.0189000 |
0.2262000 |
0.1835000 |
0.3887000 |
0.2740000 |
0.2049000 |
37.0 |
70.0 |
13 |
179.02 |
17.95 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
40881041 |
rs209606 |
C |
G |
. |
PASS |
0.9924000 |
0.9222000 |
0.9772000 |
0.8847000 |
0.9417000 |
0.9481000 |
36.58 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
40881840 |
rs1007263 |
G |
A |
. |
PASS |
0.0401000 |
0.0490000 |
0.1766000 |
0.0895000 |
0.1227000 |
0.0948000 |
37.0 |
70.0 |
27 |
345.75 |
8.75 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
40928067 |
rs2036196 |
A |
T |
. |
PASS |
0.0552000 |
0.0548000 |
0.0327000 |
0.1421000 |
0.0695000 |
0.0709000 |
37.0 |
70.0 |
32 |
535.38 |
18.75 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
40955156 |
rs10789144 |
A |
T |
. |
PASS |
0.0378000 |
0.2695000 |
0.2748000 |
0.5119000 |
0.3047000 |
0.2650000 |
37.0 |
70.0 |
14 |
545.15 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41101572 |
rs2253835 |
A |
G |
. |
PASS |
0.9259000 |
0.6801000 |
0.5357000 |
0.7922000 |
0.5297000 |
0.7091000 |
36.42 |
69.86 |
144 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41107360 |
rs491619 |
T |
C |
. |
PASS |
0.9266000 |
0.6700000 |
0.5089000 |
0.7833000 |
0.5153000 |
0.6979000 |
36.58 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41107612 |
rs2076332 |
C |
G |
. |
PASS |
0.2292000 |
0.2723000 |
0.0903000 |
0.2734000 |
0.2260000 |
0.2155000 |
37.0 |
70.0 |
44 |
624.58 |
4.07 |
43.18 |
0 |
43.18 |
0/1 |
| chr1 |
41107699 |
rs1534955 |
C |
G |
. |
PASS |
0.2950000 |
0.2983000 |
0.1776000 |
0.3111000 |
0.2352000 |
0.2634000 |
37.0 |
70.0 |
10 |
100.36 |
40.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
41204569 |
rs1057925 |
C |
T |
. |
PASS |
0.4244000 |
0.5115000 |
0.4692000 |
0.5895000 |
0.4417000 |
0.4820000 |
36.64 |
69.94 |
53 |
1000.00 |
4.12 |
62.26 |
0 |
62.26 |
0/1 |
| chr1 |
41228443 |
rs3767954 |
C |
G |
. |
PASS |
0.8623000 |
0.9280000 |
0.9901000 |
0.8946000 |
0.9294000 |
0.9167000 |
37.0 |
70.0 |
11 |
97.35 |
36.36 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
41235177 |
rs10889608 |
G |
C |
. |
PASS |
0.3775000 |
0.3069000 |
0.4484000 |
0.4493000 |
0.2812000 |
0.3776000 |
35.91 |
70.0 |
18 |
356.67 |
6.06 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
41284366 |
rs2361660 |
G |
C |
. |
PASS |
0.5484000 |
0.5548000 |
0.4841000 |
0.6978000 |
0.5542000 |
0.5675000 |
36.31 |
69.71 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41284406 |
rs2361659 |
A |
G |
. |
PASS |
0.5454000 |
0.5548000 |
0.4841000 |
0.6978000 |
0.5552000 |
0.5669000 |
35.75 |
69.58 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41285087 |
rs4660468 |
T |
C |
. |
PASS |
0.5348000 |
0.5620000 |
0.4683000 |
0.6978000 |
0.5624000 |
0.5633000 |
36.03 |
70.0 |
111 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41288098 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
30 |
165.48 |
133.33 |
23.33 |
0 |
23.33 |
0/1 |
| chr1 |
41288102 |
rs376712113 |
T |
G |
. |
PASS |
0.0030000 |
0.0101000 |
0.0010000 |
0.0080000 |
0.0000000 |
0.0039936 |
35.0 |
70.0 |
26 |
123.74 |
138.46 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
41288105 |
rs148218398 |
G |
C |
. |
PASS |
0.0038000 |
0.0403000 |
0.0000000 |
0.0835000 |
0.0583000 |
0.0347000 |
37.0 |
70.0 |
25 |
556.46 |
43.50 |
64.00 |
0 |
64.00 |
0/1 |
| chr1 |
41289205 |
rs1571258 |
G |
C |
. |
PASS |
0.8449000 |
0.9769000 |
0.9990000 |
0.9672000 |
0.9591000 |
0.9411000 |
36.8 |
70.0 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41289385 |
rs3767938 |
C |
T |
. |
PASS |
0.0582000 |
0.0836000 |
0.2421000 |
0.1074000 |
0.2331000 |
0.1428000 |
37.0 |
70.0 |
16 |
169.99 |
20.83 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
41289993 |
rs3767940 |
T |
C |
. |
PASS |
0.1157000 |
0.2349000 |
0.4603000 |
0.3449000 |
0.4315000 |
0.3093000 |
36.33 |
70.0 |
46 |
568.93 |
0.48 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
41296828 |
rs34287852 |
T |
G |
. |
PASS |
0.0061000 |
0.1124000 |
0.0516000 |
0.2167000 |
0.1176000 |
0.0940000 |
36.52 |
70.0 |
116 |
1000.00 |
4.62 |
43.10 |
0 |
43.10 |
0/1 |
| chr1 |
41298652 |
rs913378 |
T |
C |
. |
PASS |
0.6815000 |
0.7738000 |
0.8403000 |
0.6541000 |
0.7730000 |
0.7386000 |
35.71 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41453453 |
rs4453027 |
G |
T |
. |
PASS |
0.3101000 |
0.3386000 |
0.4464000 |
0.4523000 |
0.5286000 |
0.4127000 |
36.03 |
70.0 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41475085 |
rs12144160 |
A |
G |
. |
PASS |
0.2141000 |
0.6095000 |
0.5675000 |
0.5507000 |
0.5225000 |
0.4679000 |
36.43 |
70.0 |
45 |
697.26 |
10.79 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
41494005 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
70.0 |
59 |
103.10 |
149.15 |
13.56 |
0 |
15.25 |
0/1 |
| chr1 |
41540853 |
rs2011981 |
A |
T |
. |
PASS |
0.9871000 |
0.8631000 |
0.9504000 |
0.7992000 |
0.9070000 |
0.9091000 |
36.48 |
69.57 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41540861 |
rs2011982 |
T |
C |
. |
PASS |
0.9924000 |
0.8631000 |
0.9524000 |
0.7992000 |
0.9070000 |
0.9109000 |
36.31 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41949595 |
rs2759256 |
G |
A |
. |
PASS |
0.9826000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9952000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41949628 |
rs2759257 |
A |
C |
. |
PASS |
0.7534000 |
0.8948000 |
0.9077000 |
0.8748000 |
0.7270000 |
0.8233000 |
36.17 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41949972 |
rs11210278 |
C |
T |
. |
PASS |
0.0151000 |
0.0922000 |
0.3472000 |
0.2008000 |
0.1452000 |
0.1554000 |
37.0 |
68.0 |
12 |
349.11 |
10.00 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
41950312 |
rs2984691 |
T |
C |
. |
PASS |
0.8578000 |
0.9481000 |
0.9494000 |
0.9493000 |
0.8057000 |
0.8970000 |
37.0 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41976017 |
rs678110 |
C |
T |
. |
PASS |
0.3336000 |
0.6398000 |
0.9960000 |
0.5358000 |
0.7301000 |
0.6274000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41976217 |
rs72669005 |
G |
A |
. |
PASS |
0.2277000 |
0.0648000 |
0.0040000 |
0.0288000 |
0.1196000 |
0.0990000 |
36.65 |
70.0 |
74 |
1000.00 |
7.15 |
45.95 |
0 |
45.95 |
0/1 |
| chr1 |
41976328 |
rs9439043 |
T |
C |
. |
PASS |
0.8669000 |
0.9899000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9631000 |
36.14 |
70.0 |
112 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41976345 |
rs140839222 |
T |
C |
. |
PASS |
0.0174000 |
0.0476000 |
0.0040000 |
0.0249000 |
0.1166000 |
0.0397000 |
36.05 |
70.0 |
102 |
1000.00 |
11.04 |
37.25 |
0 |
37.25 |
0/1 |
| chr1 |
41976529 |
rs11809423 |
C |
T |
. |
PASS |
0.2352000 |
0.0360000 |
0.0149000 |
0.0249000 |
0.1288000 |
0.1002000 |
36.27 |
70.0 |
60 |
1000.00 |
5.76 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
41978566 |
rs2991344 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.49 |
69.79 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41978825 |
rs2483689 |
C |
G |
. |
PASS |
0.9781000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9942000 |
36.74 |
70.0 |
137 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41979156 |
rs615177 |
A |
G |
. |
PASS |
0.6604000 |
0.7190000 |
0.9931000 |
0.5835000 |
0.7342000 |
0.7344000 |
36.47 |
69.78 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
41990461 |
rs35122733 |
G |
A |
. |
PASS |
0.0144000 |
0.1124000 |
0.0040000 |
0.0417000 |
0.1033000 |
0.0487000 |
36.16 |
69.65 |
122 |
1000.00 |
5.49 |
46.72 |
0 |
46.72 |
0/1 |
| chr1 |
42045302 |
rs2810564 |
G |
A |
. |
PASS |
0.9561000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9878000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
42045747 |
rs35730380 |
T |
C |
. |
PASS |
0.0083000 |
0.1124000 |
0.0030000 |
0.0398000 |
0.0992000 |
0.0457000 |
36.72 |
70.0 |
81 |
1000.00 |
0.52 |
53.09 |
0 |
53.09 |
0/1 |
| chr1 |
42046812 |
rs2810565 |
C |
T |
. |
PASS |
0.9175000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9772000 |
34.37 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
42047208 |
rs17363472 |
C |
G |
. |
PASS |
0.0038000 |
0.1153000 |
0.0020000 |
0.0427000 |
0.1176000 |
0.0489000 |
36.31 |
70.0 |
63 |
1000.00 |
0.63 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
42048745 |
rs2810566 |
T |
C |
. |
PASS |
0.9569000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9880000 |
36.71 |
69.05 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
42049032 |
rs2984694 |
G |
A |
. |
PASS |
0.8139000 |
0.9899000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9493000 |
36.84 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
42049140 |
rs2475842 |
C |
G |
. |
PASS |
0.8139000 |
0.9899000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9493000 |
36.26 |
69.85 |
130 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
42050366 |
rs2146315 |
C |
T |
. |
PASS |
0.3215000 |
0.1945000 |
0.4345000 |
0.2326000 |
0.3241000 |
0.3093000 |
37.0 |
70.0 |
88 |
1000.00 |
14.44 |
38.64 |
0 |
38.64 |
0/1 |
| chr1 |
42331179 |
rs6678302 |
A |
G |
. |
PASS |
0.5809000 |
0.4697000 |
0.5615000 |
0.5398000 |
0.6575000 |
0.5683000 |
36.54 |
70.0 |
111 |
1000.00 |
10.88 |
46.85 |
0 |
46.85 |
0/1 |
| chr1 |
42331353 |
rs11210535 |
G |
A |
. |
PASS |
0.6036000 |
0.4697000 |
0.5615000 |
0.5398000 |
0.6585000 |
0.5745000 |
35.0 |
70.0 |
11 |
173.04 |
15.15 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
42414629 |
rs113801417 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.4 |
28 |
92.11 |
55.71 |
17.86 |
0 |
17.86 |
0/1 |
| chr1 |
42619139 |
rs1047047 |
A |
G |
. |
PASS |
0.4614000 |
0.2896000 |
0.4038000 |
0.1650000 |
0.2004000 |
0.3155000 |
36.57 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
42629040 |
rs2232224 |
A |
G |
. |
PASS |
0.6952000 |
0.9813000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9169000 |
35.91 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
42647536 |
. |
T |
TCACACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
70.0 |
52 |
582.06 |
46.15 |
25.00 |
0 |
36.54 |
0/1 |
| chr1 |
42693597 |
rs343376 |
A |
G |
. |
PASS |
0.7632000 |
0.8862000 |
0.8482000 |
0.7913000 |
0.7239000 |
0.7953000 |
36.27 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
42938744 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
50.18 |
6.06 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
42966037 |
rs2992346 |
T |
C |
. |
PASS |
0.9735000 |
0.9986000 |
1.0000000 |
0.9990000 |
0.9980000 |
0.9922000 |
36.2 |
69.93 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43212431 |
rs4660662 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
108 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43213499 |
rs3738499 |
C |
T |
. |
PASS |
0.3200000 |
0.5980000 |
0.6677000 |
0.6004000 |
0.6748000 |
0.5541000 |
37.0 |
70.0 |
23 |
441.31 |
7.36 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
43228189 |
rs2816593 |
T |
A |
. |
PASS |
0.9985000 |
0.9928000 |
1.0000000 |
0.9791000 |
0.9959000 |
0.9936000 |
33.31 |
70.0 |
13 |
455.33 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43232877 |
rs3738505 |
A |
T |
. |
PASS |
0.2088000 |
0.1873000 |
0.4415000 |
0.2266000 |
0.3609000 |
0.2859000 |
34.6 |
66.0 |
12 |
124.10 |
6.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
43239395 |
rs2760075 |
G |
A |
. |
PASS |
0.7209000 |
0.6499000 |
0.7073000 |
0.6243000 |
0.8405000 |
0.7123000 |
35.5 |
70.0 |
35 |
506.49 |
1.43 |
45.71 |
0 |
45.71 |
0/1 |
| chr1 |
43296195 |
rs33953680 |
C |
T |
. |
PASS |
0.0234000 |
0.2723000 |
0.0099000 |
0.2952000 |
0.1902000 |
0.1424000 |
36.27 |
70.0 |
88 |
1000.00 |
9.85 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
43296354 |
rs12727498 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
11 |
168.88 |
3.03 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
43300663 |
rs4660672 |
T |
C |
. |
PASS |
0.5575000 |
0.6729000 |
0.3601000 |
0.7296000 |
0.6299000 |
0.5825000 |
36.13 |
69.64 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43300921 |
rs4660673 |
C |
G |
. |
PASS |
0.7943000 |
0.8573000 |
0.5843000 |
0.8370000 |
0.6830000 |
0.7476000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43309383 |
rs3214967 |
G |
GT |
. |
PASS |
0.5772000 |
0.4366000 |
0.5774000 |
0.6859000 |
0.6636000 |
0.5964000 |
35.2 |
70.0 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43309548 |
rs1484324 |
G |
A |
. |
PASS |
0.9486000 |
0.9582000 |
0.7976000 |
0.9980000 |
0.9990000 |
0.9393000 |
35.15 |
70.0 |
13 |
483.51 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43352685 |
rs6678503 |
A |
G |
. |
PASS |
0.8699000 |
0.7262000 |
0.7808000 |
0.8757000 |
0.8476000 |
0.8289000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43353134 |
rs6674019 |
G |
T |
. |
PASS |
0.4349000 |
0.2911000 |
0.1925000 |
0.4612000 |
0.3282000 |
0.3506000 |
36.2 |
70.0 |
20 |
517.73 |
6.67 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
43356765 |
rs10789430 |
T |
C |
. |
PASS |
0.9856000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9960000 |
36.5 |
69.75 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43357600 |
rs1681855 |
T |
C |
. |
PASS |
0.6846000 |
0.7867000 |
0.6448000 |
0.7376000 |
0.6176000 |
0.6883000 |
36.6 |
69.23 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43357803 |
rs2792600 |
G |
T |
. |
PASS |
0.3298000 |
0.2795000 |
0.1895000 |
0.4543000 |
0.3425000 |
0.3221000 |
36.43 |
70.0 |
21 |
825.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43357810 |
rs35697737 |
GAC |
G |
. |
PASS |
0.3298000 |
0.2795000 |
0.1895000 |
0.4543000 |
0.3425000 |
0.3221000 |
36.05 |
70.0 |
20 |
646.03 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43393245 |
rs11282849,rs3831326 |
G |
GGGTGAGAAAT |
. |
PASS |
0.8283000 |
0.6585000 |
0.4752000 |
0.4602000 |
0.6115000 |
0.6174000 |
36.59 |
70.0 |
35 |
753.53 |
4.94 |
62.86 |
0 |
62.86 |
0/1 |
| chr1 |
43611230 |
rs641350 |
G |
T |
. |
PASS |
0.5575000 |
0.4251000 |
0.3204000 |
0.3688000 |
0.3037000 |
0.4040000 |
36.68 |
70.0 |
82 |
1000.00 |
8.86 |
46.34 |
0 |
46.34 |
0/1 |
| chr1 |
43613786 |
rs519666 |
G |
T |
. |
PASS |
0.1619000 |
0.2017000 |
0.0010000 |
0.3211000 |
0.1534000 |
0.1653000 |
34.91 |
69.13 |
48 |
731.61 |
13.77 |
47.92 |
0 |
47.92 |
0/1 |
| chr1 |
43618596 |
rs12074551 |
G |
A |
. |
PASS |
0.0575000 |
0.1455000 |
0.0000000 |
0.2833000 |
0.1411000 |
0.1198000 |
36.37 |
70.0 |
64 |
1000.00 |
2.14 |
59.38 |
0 |
59.38 |
0/1 |
| chr1 |
43632536 |
rs7163 |
C |
T |
. |
PASS |
0.1301000 |
0.1513000 |
0.0000000 |
0.2883000 |
0.1442000 |
0.1414000 |
35.91 |
70.0 |
47 |
721.00 |
7.54 |
46.81 |
0 |
46.81 |
0/1 |
| chr1 |
43632814 |
. |
ATT |
AGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.7 |
70.0 |
46 |
768.76 |
4.35 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
43632997 |
rs1691302 |
A |
G |
. |
PASS |
0.1278000 |
0.1513000 |
0.0000000 |
0.2883000 |
0.1442000 |
0.1408000 |
37.0 |
70.0 |
11 |
185.05 |
27.27 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
43634766 |
rs55684025 |
A |
G |
. |
PASS |
0.0015000 |
0.0029000 |
0.0000000 |
0.0129000 |
0.0000000 |
0.0033946 |
37.0 |
70.0 |
16 |
253.54 |
12.50 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
43636484 |
rs1049276 |
C |
G |
. |
PASS |
0.1278000 |
0.1513000 |
0.0000000 |
0.2883000 |
0.1442000 |
0.1408000 |
37.0 |
70.0 |
65 |
1000.00 |
19.86 |
50.77 |
0 |
50.77 |
0/1 |
| chr1 |
43637549 |
rs1691289 |
A |
G |
. |
PASS |
0.1316000 |
0.1513000 |
0.0248000 |
0.2893000 |
0.1483000 |
0.1478000 |
37.0 |
70.0 |
101 |
1000.00 |
0.41 |
38.61 |
0 |
38.61 |
0/1 |
| chr1 |
43637932 |
rs9519 |
T |
C |
. |
PASS |
0.1316000 |
0.1513000 |
0.0248000 |
0.2903000 |
0.1462000 |
0.1476000 |
37.0 |
70.0 |
67 |
1000.00 |
6.42 |
59.70 |
0 |
59.70 |
0/1 |
| chr1 |
43638410 |
rs1782386 |
G |
C |
. |
PASS |
0.1309000 |
0.1513000 |
0.0000000 |
0.2903000 |
0.1462000 |
0.1424000 |
37.0 |
70.0 |
42 |
630.60 |
1.50 |
45.24 |
0 |
45.24 |
0/1 |
| chr1 |
43638457 |
rs1782387 |
T |
A |
. |
PASS |
0.1309000 |
0.1513000 |
0.0000000 |
0.2903000 |
0.1462000 |
0.1424000 |
36.66 |
70.0 |
73 |
1000.00 |
1.49 |
47.95 |
0 |
47.95 |
0/1 |
| chr1 |
43649508 |
rs663824 |
A |
G |
. |
PASS |
0.8434000 |
0.5101000 |
0.3194000 |
0.4135000 |
0.4070000 |
0.5202000 |
36.66 |
69.43 |
52 |
1000.00 |
0.99 |
67.31 |
0 |
67.31 |
0/1 |
| chr1 |
43652369 |
rs6413971 |
T |
C |
. |
PASS |
0.9879000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9968000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43663376 |
rs513009 |
A |
G |
. |
PASS |
0.5454000 |
0.7378000 |
0.6806000 |
0.9324000 |
0.7597000 |
0.7189000 |
36.77 |
70.0 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43664119 |
rs603560 |
A |
G |
. |
PASS |
0.2829000 |
0.2089000 |
0.0020000 |
0.3181000 |
0.1687000 |
0.2009000 |
37.0 |
70.0 |
10 |
146.29 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
43664218 |
rs603123 |
C |
T |
. |
PASS |
0.2829000 |
0.2089000 |
0.0020000 |
0.3181000 |
0.1748000 |
0.2021000 |
36.11 |
70.0 |
61 |
887.70 |
0.49 |
44.26 |
0 |
44.26 |
0/1 |
| chr1 |
43672636 |
rs11210812 |
T |
G |
. |
PASS |
0.1611000 |
0.4841000 |
0.6835000 |
0.5656000 |
0.5808000 |
0.4742000 |
36.57 |
70.0 |
65 |
925.29 |
7.69 |
43.08 |
0 |
43.08 |
0/1 |
| chr1 |
43675467 |
rs2453412 |
G |
A |
. |
PASS |
0.5408000 |
0.6772000 |
0.6786000 |
0.8877000 |
0.7342000 |
0.6949000 |
36.09 |
70.0 |
132 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43680839 |
rs34721748 |
T |
TG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
127.68 |
3.64 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
43680855 |
rs4233492 |
G |
A |
. |
PASS |
0.9713000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9922000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43688743 |
rs11585059 |
G |
A |
. |
PASS |
0.1672000 |
0.1427000 |
0.0010000 |
0.2793000 |
0.1329000 |
0.1462000 |
37.0 |
70.0 |
26 |
599.36 |
14.48 |
65.38 |
0 |
65.38 |
0/1 |
| chr1 |
43699935 |
rs2477561 |
C |
T |
. |
PASS |
0.9796000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9946000 |
35.62 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43700140 |
rs2483688 |
A |
G |
. |
PASS |
0.6906000 |
0.7046000 |
0.9177000 |
0.8062000 |
0.8691000 |
0.7963000 |
36.74 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43738340 |
rs10890247 |
A |
C |
. |
PASS |
0.8139000 |
0.6182000 |
0.4415000 |
0.5586000 |
0.5041000 |
0.6000000 |
36.74 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
43771016 |
rs3831248 |
TA |
T |
. |
PASS |
0.7496000 |
0.6441000 |
0.8631000 |
0.6292000 |
0.8957000 |
0.7622000 |
37.0 |
70.0 |
36 |
559.70 |
16.99 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
43773033 |
rs2275180 |
A |
G |
. |
PASS |
0.8986000 |
0.6542000 |
0.8700000 |
0.6382000 |
0.8978000 |
0.8065000 |
36.48 |
70.0 |
38 |
801.86 |
27.00 |
60.53 |
0 |
60.53 |
0/1 |
| chr1 |
43774878 |
rs2282226 |
C |
T |
. |
PASS |
0.0666000 |
0.3401000 |
0.1310000 |
0.3688000 |
0.1022000 |
0.1851000 |
36.76 |
70.0 |
99 |
1000.00 |
3.26 |
49.49 |
0 |
49.49 |
0/1 |
| chr1 |
43777852 |
rs1999595 |
C |
T |
. |
PASS |
0.6936000 |
0.8487000 |
0.8373000 |
0.8628000 |
0.8599000 |
0.8105000 |
37.0 |
70.0 |
25 |
560.60 |
6.50 |
64.00 |
0 |
64.00 |
0/1 |
| chr1 |
43779564 |
rs3120276 |
T |
C |
. |
PASS |
0.8911000 |
0.6427000 |
0.8790000 |
0.6272000 |
0.9008000 |
0.8031000 |
36.64 |
70.0 |
176 |
1000.00 |
4.92 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
43782846 |
rs1198982 |
G |
A |
. |
PASS |
0.8933000 |
0.6412000 |
0.8720000 |
0.6233000 |
0.8947000 |
0.8001000 |
37.0 |
70.0 |
27 |
303.96 |
3.70 |
37.04 |
0 |
37.04 |
0/1 |
| chr1 |
43784956 |
rs1199039 |
A |
G |
. |
PASS |
0.1815000 |
0.3631000 |
0.1478000 |
0.3777000 |
0.1125000 |
0.2258000 |
36.59 |
69.31 |
123 |
1000.00 |
3.03 |
47.15 |
0 |
47.15 |
0/1 |
| chr1 |
43812075 |
rs1760670 |
G |
A |
. |
PASS |
0.1944000 |
0.3646000 |
0.0843000 |
0.3708000 |
0.0838000 |
0.2097000 |
36.2 |
70.0 |
23 |
512.85 |
7.54 |
65.22 |
0 |
65.22 |
0/1 |
| chr1 |
43814864 |
rs839995 |
T |
C |
. |
PASS |
0.1498000 |
0.3617000 |
0.1071000 |
0.3708000 |
0.0920000 |
0.2037000 |
37.0 |
70.0 |
14 |
217.78 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
43825644 |
rs839763 |
T |
C |
. |
PASS |
0.2436000 |
0.3674000 |
0.1071000 |
0.3708000 |
0.0910000 |
0.2290000 |
37.0 |
69.96 |
76 |
866.58 |
3.22 |
35.53 |
0 |
35.53 |
0/1 |
| chr1 |
43826312 |
rs710251 |
C |
A |
. |
PASS |
0.6906000 |
0.6427000 |
0.5208000 |
0.6372000 |
0.4703000 |
0.5960000 |
36.2 |
70.0 |
35 |
472.58 |
3.81 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
43855546 |
rs839752 |
A |
G |
. |
PASS |
0.2360000 |
0.3746000 |
0.1062000 |
0.3708000 |
0.0920000 |
0.2280000 |
37.0 |
70.0 |
65 |
1000.00 |
1.43 |
63.08 |
0 |
63.08 |
0/1 |
| chr1 |
43855578 |
rs839753 |
G |
C |
. |
PASS |
0.6974000 |
0.6484000 |
0.5089000 |
0.6382000 |
0.4714000 |
0.5966000 |
36.45 |
70.0 |
68 |
1000.00 |
0.00 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
43869235 |
rs710249 |
G |
C |
. |
PASS |
0.2345000 |
0.3934000 |
0.1062000 |
0.4215000 |
0.1012000 |
0.2422000 |
37.0 |
70.0 |
31 |
538.39 |
10.89 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
43886494 |
rs2782643 |
C |
T |
. |
PASS |
0.0998000 |
0.3790000 |
0.0823000 |
0.4205000 |
0.0930000 |
0.1981000 |
36.71 |
70.0 |
89 |
1000.00 |
2.80 |
46.07 |
0 |
46.07 |
0/1 |
| chr1 |
43888348 |
rs77379551 |
C |
G |
. |
PASS |
0.0038000 |
0.0159000 |
0.0000000 |
0.0338000 |
0.0072000 |
0.0113820 |
37.0 |
70.0 |
20 |
446.19 |
14.62 |
65.00 |
0 |
65.00 |
0/1 |
| chr1 |
43888602 |
rs2782645 |
G |
A |
. |
PASS |
0.2345000 |
0.3905000 |
0.1062000 |
0.4205000 |
0.1002000 |
0.2414000 |
36.08 |
70.0 |
35 |
393.18 |
8.35 |
37.14 |
0 |
37.14 |
0/1 |
| chr1 |
43895568 |
rs41307830 |
G |
A |
. |
PASS |
0.0015000 |
0.0014000 |
0.0000000 |
0.0089000 |
0.0031000 |
0.0029952 |
36.54 |
70.0 |
60 |
860.95 |
13.08 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
43901011 |
rs2039531 |
A |
C |
. |
PASS |
0.1006000 |
0.3790000 |
0.0823000 |
0.4225000 |
0.0941000 |
0.1989000 |
36.68 |
70.0 |
73 |
1000.00 |
9.26 |
50.68 |
0 |
50.68 |
0/1 |
| chr1 |
43903589 |
rs2782648 |
G |
T |
. |
PASS |
0.1460000 |
0.3862000 |
0.0823000 |
0.4215000 |
0.0951000 |
0.2119000 |
36.6 |
69.33 |
57 |
1000.00 |
2.46 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
43904316 |
rs2842184 |
A |
G |
. |
PASS |
0.2375000 |
0.3905000 |
0.1062000 |
0.4215000 |
0.1022000 |
0.2428000 |
36.29 |
68.82 |
32 |
569.30 |
1.10 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
43906896 |
rs2027130 |
A |
G |
. |
PASS |
0.0885000 |
0.3847000 |
0.0823000 |
0.4205000 |
0.0951000 |
0.1963000 |
36.69 |
70.0 |
82 |
1000.00 |
0.88 |
47.56 |
0 |
47.56 |
0/1 |
| chr1 |
43909265 |
rs2255632 |
T |
C |
. |
PASS |
0.1233000 |
0.3948000 |
0.1329000 |
0.4254000 |
0.1104000 |
0.2210000 |
36.71 |
70.0 |
94 |
1000.00 |
4.57 |
43.62 |
0 |
43.62 |
0/1 |
| chr1 |
43912590 |
rs2782650 |
A |
G |
. |
PASS |
0.1460000 |
0.3847000 |
0.0813000 |
0.4215000 |
0.0971000 |
0.2119000 |
36.08 |
70.0 |
18 |
444.35 |
25.64 |
72.22 |
0 |
72.22 |
0/1 |
| chr1 |
43917409 |
rs2251804 |
T |
C |
. |
PASS |
0.1460000 |
0.3501000 |
0.0754000 |
0.4254000 |
0.1043000 |
0.2081000 |
37.0 |
70.0 |
79 |
1000.00 |
6.36 |
49.37 |
0 |
49.37 |
0/1 |
| chr1 |
43917637 |
rs2251802 |
G |
A |
. |
PASS |
0.1884000 |
0.3890000 |
0.0784000 |
0.4215000 |
0.0971000 |
0.2230000 |
36.74 |
69.57 |
93 |
1000.00 |
5.49 |
50.54 |
0 |
50.54 |
0/1 |
| chr1 |
43919039 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
70.0 |
55 |
137.76 |
163.64 |
16.36 |
0 |
16.36 |
0/1 |
| chr1 |
43919413 |
rs6692611 |
A |
G |
. |
PASS |
0.6967000 |
0.6470000 |
0.5089000 |
0.6362000 |
0.4714000 |
0.5958000 |
36.4 |
70.0 |
117 |
1000.00 |
11.20 |
51.28 |
0 |
51.28 |
0/1 |
| chr1 |
44035472 |
rs943513 |
G |
A |
. |
PASS |
0.2927000 |
0.2464000 |
0.2143000 |
0.3579000 |
0.1176000 |
0.2494000 |
36.31 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44041744 |
rs45605334 |
C |
T |
. |
PASS |
0.0287000 |
0.0591000 |
0.2083000 |
0.0726000 |
0.0562000 |
0.0833000 |
34.0 |
70.0 |
36 |
479.46 |
22.22 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
44070691 |
rs17371903 |
A |
G |
. |
PASS |
0.0560000 |
0.2392000 |
0.2173000 |
0.3519000 |
0.1268000 |
0.1871000 |
36.81 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44071221 |
rs631248 |
G |
A |
. |
PASS |
0.4297000 |
0.5418000 |
0.7579000 |
0.7376000 |
0.5798000 |
0.6024000 |
36.24 |
69.49 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44071853 |
rs512579 |
T |
C |
. |
PASS |
0.9614000 |
0.6167000 |
0.7341000 |
0.7972000 |
0.5992000 |
0.7642000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44072420 |
rs539096 |
A |
G |
. |
PASS |
0.8555000 |
0.5807000 |
0.7718000 |
0.7425000 |
0.5746000 |
0.7230000 |
36.55 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44075227 |
rs517622 |
T |
C |
. |
PASS |
0.9939000 |
0.9654000 |
1.0000000 |
0.9583000 |
1.0000000 |
0.9852000 |
36.04 |
70.0 |
25 |
984.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44078384 |
rs499257 |
T |
C |
. |
PASS |
0.1687000 |
0.4784000 |
0.6885000 |
0.6372000 |
0.4499000 |
0.4653000 |
34.91 |
70.0 |
23 |
877.19 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44078602 |
rs3791151 |
C |
A |
. |
PASS |
0.0628000 |
0.2248000 |
0.2133000 |
0.3260000 |
0.1084000 |
0.1773000 |
36.33 |
70.0 |
18 |
700.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44079411 |
rs603542 |
T |
C |
. |
PASS |
0.1884000 |
0.4784000 |
0.6875000 |
0.6382000 |
0.4499000 |
0.4704000 |
36.69 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44083015 |
rs653953 |
G |
A |
. |
PASS |
0.6437000 |
0.5086000 |
0.6855000 |
0.6441000 |
0.4499000 |
0.5956000 |
35.91 |
70.0 |
33 |
1000.00 |
3.98 |
96.97 |
0 |
100.00 |
1/1 |
| chr1 |
44083110 |
rs571862 |
C |
T |
. |
PASS |
0.9455000 |
0.5764000 |
0.7649000 |
0.7167000 |
0.5634000 |
0.7374000 |
36.56 |
70.0 |
136 |
1000.00 |
0.65 |
99.26 |
0 |
99.26 |
1/1 |
| chr1 |
44083507 |
rs641365 |
T |
C |
. |
PASS |
0.9455000 |
0.5764000 |
0.7649000 |
0.7157000 |
0.5634000 |
0.7372000 |
36.75 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44083519 |
rs641351 |
G |
A |
. |
PASS |
0.9455000 |
0.5764000 |
0.7649000 |
0.7157000 |
0.5634000 |
0.7372000 |
36.33 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44084739 |
rs1143701 |
C |
T |
. |
PASS |
0.9455000 |
0.5764000 |
0.7649000 |
0.7167000 |
0.5634000 |
0.7374000 |
36.64 |
70.0 |
99 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44086831 |
rs1143702 |
C |
T |
. |
PASS |
0.5507000 |
0.5014000 |
0.6855000 |
0.6441000 |
0.4519000 |
0.5705000 |
36.28 |
70.0 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44137257 |
rs586339 |
C |
A |
. |
PASS |
0.9478000 |
0.5591000 |
0.7946000 |
0.7028000 |
0.5706000 |
0.7402000 |
36.35 |
70.0 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44253015 |
rs3828139 |
C |
T |
. |
PASS |
0.4697000 |
0.5043000 |
0.3750000 |
0.4881000 |
0.3415000 |
0.4341000 |
36.71 |
69.51 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44290530 |
rs37458 |
A |
G |
. |
PASS |
0.3139000 |
0.2378000 |
0.1429000 |
0.3459000 |
0.1145000 |
0.2364000 |
36.2 |
70.0 |
56 |
1000.00 |
10.24 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
44324060 |
rs3011226 |
G |
A |
. |
PASS |
0.9766000 |
0.8271000 |
0.9077000 |
0.8917000 |
0.7730000 |
0.8852000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44386615 |
rs3120803 |
A |
G |
. |
PASS |
0.6407000 |
0.8602000 |
0.8363000 |
0.9115000 |
0.8671000 |
0.8091000 |
36.73 |
69.1 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44387228 |
rs1636876 |
T |
G |
. |
PASS |
0.4690000 |
0.8516000 |
0.8304000 |
0.9115000 |
0.8671000 |
0.7614000 |
36.76 |
69.59 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44395786 |
rs2108202 |
C |
T |
. |
PASS |
0.1430000 |
0.6311000 |
0.6071000 |
0.7594000 |
0.6084000 |
0.5188000 |
36.6 |
69.78 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44401384 |
rs2242637 |
A |
G |
. |
PASS |
0.7368000 |
0.8732000 |
0.8254000 |
0.9115000 |
0.8814000 |
0.8369000 |
36.58 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44402565 |
rs12127737 |
G |
A |
. |
PASS |
0.1021000 |
0.6239000 |
0.6012000 |
0.7416000 |
0.6022000 |
0.5010000 |
35.0 |
70.0 |
12 |
441.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44415415 |
rs2240447 |
C |
T |
. |
PASS |
0.0877000 |
0.6167000 |
0.6161000 |
0.7634000 |
0.6104000 |
0.5052000 |
36.69 |
70.0 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44426025 |
rs2301993 |
G |
A |
. |
PASS |
0.2269000 |
0.6282000 |
0.6151000 |
0.7634000 |
0.5982000 |
0.5409000 |
37.0 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44426948 |
rs2906596 |
G |
A |
. |
PASS |
0.6589000 |
0.8646000 |
0.8284000 |
0.9155000 |
0.9080000 |
0.8217000 |
36.67 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44432500 |
rs4660759 |
C |
G |
. |
PASS |
0.2390000 |
0.6297000 |
0.6161000 |
0.7634000 |
0.6002000 |
0.5449000 |
36.52 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44442521 |
rs12410334 |
A |
C |
. |
PASS |
0.0946000 |
0.6513000 |
0.7361000 |
0.7992000 |
0.6933000 |
0.5593000 |
37.0 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44451112 |
rs200144349 |
GGGA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
70.0 |
15 |
246.99 |
0.00 |
60.00 |
1 |
100.00 |
0/1 |
| chr1 |
44451113 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
333.53 |
0.00 |
71.43 |
1 |
71.43 |
0/1 |
| chr1 |
44451114 |
rs371619921 |
GA |
G |
. |
PASS |
0.6747000 |
0.7896000 |
0.8313000 |
0.8549000 |
0.8742000 |
0.7973000 |
36.57 |
70.0 |
14 |
533.74 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
44451124 |
rs75761202 |
G |
T |
. |
PASS |
0.2080000 |
0.4683000 |
0.4226000 |
0.5437000 |
0.5020000 |
0.4121000 |
33.4 |
70.0 |
10 |
342.04 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44457739 |
rs11376967,rs72513267 |
T |
TC |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
44474336 |
rs72683980 |
A |
G |
. |
PASS |
0.0008000 |
0.1182000 |
0.0040000 |
0.0080000 |
0.0010000 |
0.0191690 |
37.0 |
70.0 |
11 |
268.58 |
4.55 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
44569162 |
rs1291053 |
A |
G |
. |
PASS |
0.4327000 |
0.4841000 |
0.2252000 |
0.5139000 |
0.4182000 |
0.4115000 |
35.5 |
70.0 |
25 |
214.44 |
5.00 |
32.00 |
0 |
32.00 |
0/1 |
| chr1 |
44587895 |
rs2485646 |
C |
T |
. |
PASS |
0.0772000 |
0.4092000 |
0.1716000 |
0.3390000 |
0.3313000 |
0.2444000 |
36.37 |
69.87 |
65 |
1000.00 |
6.40 |
58.46 |
0 |
58.46 |
0/1 |
| chr1 |
44595113 |
rs2429051 |
G |
C |
. |
PASS |
0.2231000 |
0.5159000 |
0.6280000 |
0.6928000 |
0.5143000 |
0.4964000 |
36.45 |
70.0 |
140 |
1000.00 |
4.29 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
44595410 |
rs2485652 |
A |
G |
. |
PASS |
0.0915000 |
0.2594000 |
0.4236000 |
0.3966000 |
0.2587000 |
0.2756000 |
36.23 |
70.0 |
67 |
1000.00 |
12.23 |
46.27 |
0 |
46.27 |
0/1 |
| chr1 |
44595426 |
rs2429050 |
G |
A |
. |
PASS |
0.0915000 |
0.2579000 |
0.4236000 |
0.3966000 |
0.2577000 |
0.2752000 |
36.17 |
70.0 |
62 |
968.24 |
15.46 |
46.77 |
0 |
46.77 |
0/1 |
| chr1 |
44596379 |
rs34057178,rs200059598 |
CCAA |
C |
. |
PASS |
0.0719000 |
0.2723000 |
0.2887000 |
0.1750000 |
0.4110000 |
0.2302000 |
35.98 |
69.95 |
96 |
1000.00 |
0.42 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
44603506 |
rs2429060 |
C |
T |
. |
PASS |
0.7148000 |
0.3818000 |
0.3016000 |
0.3002000 |
0.4693000 |
0.4543000 |
36.16 |
69.53 |
89 |
1000.00 |
8.26 |
48.31 |
0 |
48.31 |
0/1 |
| chr1 |
44603745 |
rs2485651 |
T |
G |
. |
PASS |
0.9077000 |
0.7450000 |
0.5794000 |
0.6034000 |
0.7434000 |
0.7258000 |
35.0 |
70.0 |
11 |
168.88 |
15.15 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
44604281 |
rs113756460,rs61473384 |
G |
GGGGCTTTGTAAA |
. |
PASS |
0.8949000 |
0.7435000 |
0.5794000 |
0.6034000 |
0.7393000 |
0.7214000 |
37.0 |
70.0 |
12 |
117.67 |
16.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
44604718 |
. |
GTT |
GGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.42 |
65.87 |
170 |
764.34 |
10.82 |
18.24 |
0 |
19.41 |
0/1 |
| chr1 |
44604743 |
rs144185657 |
A |
ATAT |
. |
PASS |
0.4266000 |
0.3573000 |
0.4236000 |
0.3062000 |
0.3834000 |
0.3838000 |
36.07 |
69.82 |
197 |
1000.00 |
0.46 |
55.84 |
0 |
56.35 |
0/1 |
| chr1 |
44604754 |
rs55977121 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
69.79 |
200 |
1000.00 |
4.47 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
44604782 |
rs57702115 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
69.67 |
220 |
1000.00 |
17.62 |
23.64 |
0 |
23.64 |
0/1 |
| chr1 |
44604786 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.49 |
69.4 |
213 |
1000.00 |
13.98 |
22.07 |
0 |
22.07 |
0/1 |
| chr1 |
44604791 |
rs55751755 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.62 |
218 |
982.20 |
9.50 |
18.35 |
0 |
18.35 |
0/1 |
| chr1 |
44604797 |
rs58786892 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
69.65 |
220 |
588.23 |
5.95 |
14.09 |
0 |
14.09 |
0/1 |
| chr1 |
44604804 |
rs57391455 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
69.53 |
223 |
77.97 |
3.02 |
8.52 |
0 |
8.52 |
0/1 |
| chr1 |
44605006 |
rs2485649 |
G |
A |
. |
PASS |
0.3079000 |
0.3530000 |
0.2996000 |
0.2863000 |
0.4714000 |
0.3401000 |
35.17 |
65.35 |
214 |
1000.00 |
6.52 |
49.07 |
0 |
49.07 |
0/1 |
| chr1 |
44606000 |
rs375887615 |
G |
A |
. |
PASS |
0.6513000 |
0.5231000 |
0.3730000 |
0.4145000 |
0.4806000 |
0.4966000 |
36.43 |
67.24 |
207 |
209.69 |
6.35 |
10.14 |
0 |
10.14 |
0/1 |
| chr1 |
44606021 |
. |
GCT |
GTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.54 |
172 |
508.81 |
12.61 |
15.12 |
0 |
15.12 |
0/1 |
| chr1 |
44606031 |
rs2995020 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
65.2 |
178 |
243.21 |
11.01 |
11.24 |
0 |
11.24 |
0/1 |
| chr1 |
44606254 |
rs2429057 |
C |
T |
. |
PASS |
0.8691000 |
0.7435000 |
0.5774000 |
0.6004000 |
0.7382000 |
0.7135000 |
35.74 |
62.72 |
265 |
1000.00 |
0.40 |
35.85 |
0 |
35.85 |
0/1 |
| chr1 |
44606565 |
rs2022028 |
A |
G |
. |
PASS |
0.8986000 |
0.7450000 |
0.5784000 |
0.6024000 |
0.7444000 |
0.7232000 |
36.87 |
69.94 |
168 |
1000.00 |
3.80 |
55.36 |
0 |
55.36 |
0/1 |
| chr1 |
44679556 |
rs803369 |
A |
G |
. |
PASS |
0.9153000 |
0.7450000 |
0.5139000 |
0.6024000 |
0.7454000 |
0.7149000 |
37.0 |
69.33 |
49 |
1000.00 |
4.22 |
61.22 |
0 |
61.22 |
0/1 |
| chr1 |
44685664 |
rs41270415 |
C |
T |
. |
PASS |
0.0038000 |
0.0490000 |
0.0000000 |
0.0885000 |
0.0757000 |
0.0403000 |
36.75 |
70.0 |
102 |
1000.00 |
2.45 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
44686322 |
rs12419 |
T |
C |
. |
PASS |
0.1876000 |
0.3357000 |
0.2371000 |
0.2584000 |
0.4018000 |
0.2742000 |
36.56 |
70.0 |
50 |
932.82 |
3.70 |
54.00 |
0 |
54.00 |
0/1 |
| chr1 |
45005996 |
rs272570 |
G |
A |
. |
PASS |
0.0227000 |
0.3718000 |
0.4583000 |
0.1829000 |
0.3436000 |
0.2536000 |
36.13 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45205598 |
rs3820586 |
T |
C |
. |
PASS |
0.4818000 |
0.2781000 |
0.2847000 |
0.1392000 |
0.1810000 |
0.2863000 |
37.0 |
70.0 |
51 |
607.66 |
0.62 |
37.25 |
0 |
37.25 |
0/1 |
| chr1 |
45216038 |
rs12566610 |
C |
G |
. |
PASS |
0.4818000 |
0.2781000 |
0.2847000 |
0.1392000 |
0.1810000 |
0.2863000 |
35.5 |
70.0 |
29 |
520.40 |
6.03 |
55.17 |
0 |
55.17 |
0/1 |
| chr1 |
45218895 |
rs3795713 |
A |
T |
. |
PASS |
0.4818000 |
0.2781000 |
0.2857000 |
0.1392000 |
0.1810000 |
0.2865000 |
36.43 |
70.0 |
117 |
1000.00 |
18.56 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
45224757 |
rs16832228 |
G |
A |
. |
PASS |
0.5968000 |
0.4625000 |
0.4891000 |
0.3618000 |
0.3579000 |
0.4627000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45224998 |
rs4342887 |
A |
C |
. |
PASS |
0.1808000 |
0.2507000 |
0.2857000 |
0.1382000 |
0.1810000 |
0.2031000 |
36.65 |
70.0 |
67 |
1000.00 |
1.23 |
50.75 |
0 |
50.75 |
0/1 |
| chr1 |
45226084 |
rs1140279 |
G |
A |
. |
PASS |
0.1362000 |
0.2464000 |
0.2857000 |
0.1382000 |
0.1810000 |
0.1907000 |
36.29 |
70.0 |
119 |
1000.00 |
3.36 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
45241285 |
rs12120833 |
C |
G |
. |
PASS |
0.0280000 |
0.0562000 |
0.0000000 |
0.0954000 |
0.0767000 |
0.0493000 |
36.25 |
70.0 |
34 |
517.36 |
13.97 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
45241374 |
rs3806398 |
G |
A |
. |
PASS |
0.0719000 |
0.1571000 |
0.1597000 |
0.2107000 |
0.1718000 |
0.1488000 |
35.91 |
70.0 |
17 |
363.82 |
3.21 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
45246242 |
rs6697153 |
T |
A |
. |
PASS |
0.4667000 |
0.2752000 |
0.2857000 |
0.1392000 |
0.1759000 |
0.2812000 |
36.4 |
70.0 |
41 |
663.37 |
17.56 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
45246333 |
rs112502872 |
T |
C |
. |
PASS |
0.0530000 |
0.1556000 |
0.1597000 |
0.2078000 |
0.1472000 |
0.1382000 |
37.0 |
69.92 |
54 |
891.03 |
4.27 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
45250007 |
rs59895800 |
C |
G |
. |
PASS |
0.0726000 |
0.1542000 |
0.1597000 |
0.2078000 |
0.1472000 |
0.1432000 |
37.0 |
70.0 |
51 |
770.60 |
14.15 |
45.10 |
0 |
45.10 |
0/1 |
| chr1 |
45252015 |
rs41269079 |
T |
A |
. |
PASS |
0.0530000 |
0.1542000 |
0.1597000 |
0.2078000 |
0.1472000 |
0.1380000 |
35.5 |
70.0 |
14 |
243.39 |
21.43 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
45266832 |
rs17881698 |
A |
G |
. |
PASS |
0.1445000 |
0.2450000 |
0.2857000 |
0.1402000 |
0.1748000 |
0.1919000 |
37.0 |
69.17 |
55 |
804.48 |
11.21 |
43.64 |
0 |
43.64 |
0/1 |
| chr1 |
45269333 |
rs17886354 |
A |
G |
. |
PASS |
0.0068000 |
0.0994000 |
0.0000000 |
0.1123000 |
0.0838000 |
0.0545000 |
36.73 |
70.0 |
87 |
1000.00 |
1.15 |
50.57 |
0 |
50.57 |
0/1 |
| chr1 |
45270024 |
rs11211036 |
G |
C |
. |
PASS |
0.1445000 |
0.2450000 |
0.2857000 |
0.1402000 |
0.1748000 |
0.1919000 |
36.56 |
69.63 |
94 |
1000.00 |
1.02 |
57.45 |
0 |
57.45 |
0/1 |
| chr1 |
45271097 |
rs17883049 |
G |
A |
. |
PASS |
0.1445000 |
0.2450000 |
0.2847000 |
0.1402000 |
0.1748000 |
0.1917000 |
36.33 |
70.0 |
66 |
1000.00 |
0.51 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
45271828 |
rs17885815 |
T |
C |
. |
PASS |
0.0764000 |
0.1427000 |
0.1647000 |
0.1759000 |
0.1421000 |
0.1362000 |
37.0 |
70.0 |
110 |
1000.00 |
0.73 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
45271912 |
rs17886118 |
G |
A |
. |
PASS |
0.0855000 |
0.2421000 |
0.2847000 |
0.1412000 |
0.1759000 |
0.1761000 |
36.33 |
70.0 |
52 |
550.87 |
21.37 |
34.62 |
0 |
34.62 |
0/1 |
| chr1 |
45291908 |
rs11211040 |
G |
A |
. |
PASS |
0.1558000 |
0.2450000 |
0.2887000 |
0.1412000 |
0.1748000 |
0.1957000 |
35.76 |
70.0 |
75 |
917.10 |
11.68 |
38.67 |
0 |
38.67 |
0/1 |
| chr1 |
45292866 |
rs2295996 |
G |
A |
. |
PASS |
0.0847000 |
0.1671000 |
0.1964000 |
0.1710000 |
0.1452000 |
0.1478000 |
36.46 |
70.0 |
190 |
1000.00 |
3.65 |
46.84 |
0 |
46.84 |
0/1 |
| chr1 |
45293518 |
rs7525308 |
A |
G |
. |
PASS |
0.6021000 |
0.4409000 |
0.4911000 |
0.3191000 |
0.3200000 |
0.4455000 |
36.64 |
70.0 |
167 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45293752 |
rs2295997 |
T |
C |
. |
PASS |
0.2156000 |
0.2522000 |
0.2897000 |
0.1412000 |
0.1748000 |
0.2127000 |
36.68 |
70.0 |
88 |
1000.00 |
7.42 |
43.18 |
0 |
43.18 |
0/1 |
| chr1 |
45294156 |
rs2273940 |
T |
C |
. |
PASS |
0.5930000 |
0.4409000 |
0.4921000 |
0.3191000 |
0.3200000 |
0.4433000 |
36.5 |
69.79 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45296752 |
rs2295998 |
C |
T |
. |
PASS |
0.1853000 |
0.2493000 |
0.2887000 |
0.1431000 |
0.1748000 |
0.2045000 |
34.6 |
70.0 |
23 |
291.99 |
13.04 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
45297753 |
rs2295999 |
A |
G |
. |
PASS |
0.4652000 |
0.2695000 |
0.2887000 |
0.1421000 |
0.1759000 |
0.2812000 |
37.0 |
70.0 |
32 |
497.76 |
14.58 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
45307506 |
rs3795720 |
G |
A |
. |
PASS |
0.3306000 |
0.5086000 |
0.4454000 |
0.3151000 |
0.3139000 |
0.3720000 |
36.26 |
69.69 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45308409 |
rs6696675 |
G |
A |
. |
PASS |
0.6104000 |
0.5303000 |
0.4524000 |
0.3201000 |
0.3139000 |
0.4513000 |
36.38 |
70.0 |
156 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45309541 |
rs71040512 |
C |
CTT |
. |
PASS |
0.1490000 |
0.3530000 |
0.2867000 |
0.1431000 |
0.1789000 |
0.2097000 |
35.0 |
70.0 |
12 |
189.20 |
0.00 |
50.00 |
0 |
58.33 |
0/1 |
| chr1 |
45340282 |
rs9988451 |
C |
T |
. |
PASS |
0.6097000 |
0.5360000 |
0.4514000 |
0.3211000 |
0.3129000 |
0.4517000 |
36.33 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45341186 |
rs72674089 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0005990 |
37.0 |
70.0 |
14 |
176.01 |
14.29 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
45345446 |
rs3738248 |
T |
A |
. |
PASS |
0.1120000 |
0.1527000 |
0.1577000 |
0.1720000 |
0.1421000 |
0.1448000 |
37.0 |
68.0 |
27 |
299.82 |
16.30 |
37.04 |
0 |
37.04 |
0/1 |
| chr1 |
45362992 |
rs263978 |
T |
C |
. |
PASS |
0.9705000 |
0.7565000 |
0.9742000 |
0.5239000 |
0.6595000 |
0.7911000 |
36.72 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45424381 |
rs471564 |
A |
G |
. |
PASS |
0.2292000 |
0.1585000 |
0.1647000 |
0.1759000 |
0.1544000 |
0.1811000 |
36.0 |
67.75 |
22 |
390.54 |
22.73 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
45424509 |
rs637224 |
G |
C |
. |
PASS |
0.4773000 |
0.1787000 |
0.1647000 |
0.1769000 |
0.1544000 |
0.2496000 |
37.0 |
70.0 |
15 |
294.17 |
8.89 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
45444038 |
rs11556200 |
G |
A |
. |
PASS |
0.4032000 |
0.4265000 |
0.2758000 |
0.1998000 |
0.1810000 |
0.2965000 |
36.65 |
70.0 |
63 |
1000.00 |
10.64 |
53.97 |
0 |
53.97 |
0/1 |
| chr1 |
45457681 |
rs12126314 |
G |
A |
. |
PASS |
0.5015000 |
0.4323000 |
0.2748000 |
0.1988000 |
0.1810000 |
0.3229000 |
36.4 |
69.7 |
39 |
673.54 |
7.18 |
51.28 |
0 |
51.28 |
0/1 |
| chr1 |
45457708 |
rs12126318 |
G |
A |
. |
PASS |
0.5045000 |
0.4323000 |
0.2748000 |
0.1988000 |
0.1810000 |
0.3237000 |
35.91 |
69.68 |
45 |
727.01 |
2.22 |
48.89 |
0 |
48.89 |
0/1 |
| chr1 |
45457873 |
rs401665 |
G |
A |
. |
PASS |
0.6452000 |
0.5793000 |
0.4395000 |
0.3728000 |
0.3354000 |
0.4794000 |
36.37 |
70.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45469155 |
rs11548990 |
C |
T |
. |
PASS |
0.1044000 |
0.0692000 |
0.1171000 |
0.0676000 |
0.0450000 |
0.0831000 |
36.54 |
70.0 |
71 |
827.84 |
6.28 |
36.62 |
0 |
36.62 |
0/1 |
| chr1 |
45469176 |
rs12749251 |
A |
T |
. |
PASS |
0.0272000 |
0.0591000 |
0.0010000 |
0.1123000 |
0.0685000 |
0.0515000 |
36.0 |
70.0 |
80 |
1000.00 |
4.17 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
45469586 |
rs41312020 |
G |
A |
. |
PASS |
0.1067000 |
0.0692000 |
0.1171000 |
0.0676000 |
0.0450000 |
0.0837000 |
34.18 |
70.0 |
65 |
1000.00 |
4.62 |
52.31 |
0 |
52.31 |
0/1 |
| chr1 |
45470130 |
rs7528534 |
T |
C |
. |
PASS |
0.8290000 |
0.9280000 |
0.8740000 |
0.9274000 |
0.9560000 |
0.8964000 |
36.57 |
70.0 |
46 |
986.63 |
7.45 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
45472798 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.69 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
45472798 |
rs147908761,rs67456297,rs10545690 |
TTGTGTGTG |
T |
. |
PASS |
0.9660000 |
0.9986000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9906000 |
35.42 |
70.0 |
29 |
346.89 |
14.37 |
41.38 |
1 |
100.00 |
0/1 |
| chr1 |
45472798 |
. |
TTGTGTGTG |
TTGTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
29 |
346.89 |
10.14 |
58.62 |
1 |
100.00 |
0/1 |
| chr1 |
45472799 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.69 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
45472800 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.69 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
45472801 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.69 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
45474008 |
rs7541207 |
T |
C |
. |
PASS |
0.1558000 |
0.4092000 |
0.2897000 |
0.2127000 |
0.2444000 |
0.2466000 |
36.71 |
70.0 |
54 |
1000.00 |
6.32 |
75.93 |
0 |
75.93 |
0/1 |
| chr1 |
45474750 |
rs2275599 |
A |
T |
. |
PASS |
0.4304000 |
0.4294000 |
0.2897000 |
0.2137000 |
0.2444000 |
0.3221000 |
37.0 |
70.0 |
33 |
615.92 |
9.09 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
45474755 |
rs2275598 |
C |
G |
. |
PASS |
0.4304000 |
0.4294000 |
0.2897000 |
0.2137000 |
0.2444000 |
0.3221000 |
37.0 |
70.0 |
33 |
615.92 |
9.09 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
45475566 |
rs6429552 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.31 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45476069 |
rs7533668 |
C |
A |
. |
PASS |
0.9728000 |
0.9986000 |
0.9921000 |
0.9950000 |
1.0000000 |
0.9900000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45476489 |
rs3806405 |
A |
G |
. |
PASS |
0.4304000 |
0.4294000 |
0.2897000 |
0.2137000 |
0.2444000 |
0.3221000 |
37.0 |
70.0 |
17 |
250.52 |
32.35 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
45476663 |
rs2298005 |
G |
A |
. |
PASS |
0.1732000 |
0.4107000 |
0.2897000 |
0.2127000 |
0.2434000 |
0.2512000 |
35.91 |
70.0 |
45 |
727.02 |
6.67 |
48.89 |
0 |
48.89 |
0/1 |
| chr1 |
45479499 |
rs2234480 |
G |
C |
. |
PASS |
0.1528000 |
0.0706000 |
0.1171000 |
0.0646000 |
0.0450000 |
0.0954000 |
36.27 |
70.0 |
73 |
1000.00 |
6.56 |
45.21 |
0 |
45.21 |
0/1 |
| chr1 |
45479709 |
rs2228084 |
A |
G |
. |
PASS |
0.1528000 |
0.0706000 |
0.1171000 |
0.0646000 |
0.0450000 |
0.0954000 |
36.72 |
70.0 |
80 |
1000.00 |
3.43 |
53.75 |
0 |
53.75 |
0/1 |
| chr1 |
45479772 |
rs11211066 |
G |
T |
. |
PASS |
0.1551000 |
0.4107000 |
0.2887000 |
0.2087000 |
0.2444000 |
0.2456000 |
35.67 |
70.0 |
44 |
922.72 |
10.61 |
61.36 |
0 |
61.36 |
0/1 |
| chr1 |
45480733 |
rs6429553 |
C |
T |
. |
PASS |
0.9728000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9926000 |
35.65 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45485710 |
rs3831961 |
TG |
T |
. |
PASS |
0.0552000 |
0.0648000 |
0.1171000 |
0.0646000 |
0.0450000 |
0.0689000 |
37.0 |
70.0 |
34 |
315.11 |
3.21 |
32.35 |
0 |
32.35 |
0/1 |
| chr1 |
45486272 |
rs998418 |
T |
C |
. |
PASS |
0.4766000 |
0.5620000 |
0.7024000 |
0.7813000 |
0.7495000 |
0.6484000 |
37.0 |
68.75 |
43 |
506.43 |
8.43 |
37.21 |
0 |
37.21 |
0/1 |
| chr1 |
45504806 |
rs72684426 |
C |
T |
. |
PASS |
0.0129000 |
0.0591000 |
0.1181000 |
0.0646000 |
0.0348000 |
0.0551000 |
37.0 |
69.62 |
113 |
1000.00 |
2.91 |
46.90 |
0 |
46.90 |
0/1 |
| chr1 |
45524213 |
rs3738246 |
C |
T |
. |
PASS |
0.8956000 |
0.8588000 |
0.8690000 |
0.8350000 |
0.9356000 |
0.8808000 |
37.0 |
70.0 |
21 |
363.80 |
12.12 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
45536004 |
rs346702 |
A |
G |
. |
PASS |
0.7239000 |
0.8429000 |
0.8661000 |
0.8300000 |
0.9356000 |
0.8317000 |
36.43 |
69.05 |
53 |
673.17 |
1.08 |
39.62 |
0 |
39.62 |
0/1 |
| chr1 |
45671966 |
rs4454584 |
A |
G |
. |
PASS |
0.5620000 |
0.2147000 |
0.1369000 |
0.2634000 |
0.1278000 |
0.2835000 |
36.71 |
70.0 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45796269 |
rs3219493 |
G |
C |
. |
PASS |
0.9705000 |
0.9352000 |
0.9137000 |
0.9205000 |
0.9254000 |
0.9353000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45797505 |
rs3219489 |
C |
G |
. |
PASS |
0.2579000 |
0.4841000 |
0.3909000 |
0.2445000 |
0.2587000 |
0.3135000 |
37.0 |
70.0 |
51 |
854.13 |
1.57 |
49.02 |
0 |
49.02 |
0/1 |
| chr1 |
45798555 |
rs3219487 |
T |
C |
. |
PASS |
0.9766000 |
0.9366000 |
0.9137000 |
0.9205000 |
0.9254000 |
0.9371000 |
36.81 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45813441 |
rs2298018 |
T |
C |
. |
PASS |
0.6467000 |
0.5072000 |
0.3859000 |
0.2455000 |
0.2607000 |
0.4189000 |
37.0 |
70.0 |
18 |
289.28 |
11.11 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
45880751 |
rs781230 |
C |
T |
. |
PASS |
0.4100000 |
0.6412000 |
0.6200000 |
0.7604000 |
0.7239000 |
0.6160000 |
34.82 |
69.82 |
16 |
354.83 |
17.05 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
45887288 |
rs3790582 |
T |
C |
. |
PASS |
0.2632000 |
0.3429000 |
0.3492000 |
0.2366000 |
0.2720000 |
0.2879000 |
37.0 |
70.0 |
11 |
143.27 |
0.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
45965340 |
rs7546268 |
T |
C |
. |
PASS |
0.8616000 |
0.8372000 |
0.9444000 |
0.6978000 |
0.7761000 |
0.8253000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45981258 |
rs7516006 |
A |
G |
. |
PASS |
0.8616000 |
0.8372000 |
0.9444000 |
0.6978000 |
0.7761000 |
0.8253000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
45981270 |
. |
C |
CAAAAAAAAAAAAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.19 |
70.0 |
18 |
677.79 |
0.00 |
88.89 |
0 |
100.00 |
1/1 |
| chr1 |
45981295 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
59.74 |
109.09 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
45981512 |
rs2356559 |
T |
C |
. |
PASS |
0.8563000 |
0.8372000 |
0.9216000 |
0.6958000 |
0.7740000 |
0.8185000 |
37.0 |
69.13 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46081940 |
rs2356581 |
T |
A |
. |
PASS |
0.9985000 |
0.9899000 |
0.9931000 |
0.9682000 |
0.9714000 |
0.9848000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46094027 |
rs1250 |
A |
G |
. |
PASS |
0.2648000 |
0.3458000 |
0.3472000 |
0.2823000 |
0.3998000 |
0.3225000 |
36.36 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46095272 |
rs1135812 |
T |
C |
. |
PASS |
0.2670000 |
0.3473000 |
0.3165000 |
0.2833000 |
0.4090000 |
0.3191000 |
36.62 |
68.75 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46117161 |
rs4607935 |
C |
T |
. |
PASS |
0.2670000 |
0.3473000 |
0.3155000 |
0.2833000 |
0.4131000 |
0.3197000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46117185 |
rs4609469 |
C |
T |
. |
PASS |
0.2670000 |
0.3473000 |
0.3413000 |
0.2863000 |
0.4151000 |
0.3259000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46124663 |
rs6671802 |
A |
G |
. |
PASS |
0.5779000 |
0.4942000 |
0.3532000 |
0.5288000 |
0.5378000 |
0.5034000 |
36.56 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46195211 |
rs372814348,rs139068713 |
TAAC |
T |
. |
PASS |
0.2504000 |
0.3473000 |
0.3046000 |
0.2833000 |
0.4121000 |
0.3129000 |
36.67 |
70.0 |
18 |
659.05 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46195375 |
rs28375469 |
T |
C |
. |
PASS |
0.2504000 |
0.3473000 |
0.3135000 |
0.2833000 |
0.4131000 |
0.3149000 |
36.25 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46206540 |
rs28507722 |
A |
G |
. |
PASS |
0.2504000 |
0.3473000 |
0.3135000 |
0.2833000 |
0.4131000 |
0.3149000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46290311 |
rs10561161,rs34699982 |
GTA |
G |
. |
PASS |
0.4713000 |
0.3790000 |
0.2976000 |
0.2694000 |
0.4376000 |
0.3764000 |
36.76 |
70.0 |
25 |
909.67 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46472153 |
rs6429592 |
G |
A |
. |
PASS |
0.9221000 |
0.8674000 |
0.9841000 |
0.7177000 |
0.8630000 |
0.8744000 |
35.5 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46473902 |
rs3922886 |
A |
T |
. |
PASS |
0.4402000 |
0.3833000 |
0.2917000 |
0.2694000 |
0.4335000 |
0.3668000 |
35.74 |
70.0 |
19 |
729.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46476587 |
rs11211247 |
T |
G |
. |
PASS |
0.9221000 |
0.8674000 |
0.9841000 |
0.7177000 |
0.8630000 |
0.8744000 |
36.76 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46629653 |
rs6671303 |
A |
C |
. |
PASS |
0.5968000 |
0.5533000 |
0.4306000 |
0.5924000 |
0.6943000 |
0.5755000 |
36.76 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46629690 |
rs12029134 |
A |
C |
. |
PASS |
0.4501000 |
0.3084000 |
0.3810000 |
0.1362000 |
0.4673000 |
0.3568000 |
36.87 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46629713 |
rs1891337 |
G |
A |
. |
PASS |
0.8071000 |
0.9856000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9469000 |
36.32 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46641424 |
rs68179532 |
G |
A |
. |
PASS |
0.1959000 |
0.2219000 |
0.1260000 |
0.0746000 |
0.1820000 |
0.1583000 |
34.6 |
70.0 |
10 |
358.20 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46641827 |
rs12030928 |
A |
G |
. |
PASS |
0.2103000 |
0.3184000 |
0.3998000 |
0.1909000 |
0.5112000 |
0.3183000 |
36.35 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46650191 |
rs35321971 |
C |
CG |
. |
PASS |
0.0696000 |
0.2550000 |
0.1736000 |
0.1014000 |
0.1380000 |
0.1360000 |
36.54 |
70.0 |
23 |
909.65 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46655158 |
rs6659553 |
T |
C |
. |
PASS |
0.7890000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9425000 |
36.78 |
70.0 |
165 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46657651 |
rs7521880 |
T |
C |
. |
PASS |
0.3343000 |
0.3963000 |
0.1726000 |
0.3549000 |
0.4325000 |
0.3337000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46658328 |
rs2292484 |
A |
G |
. |
PASS |
0.3343000 |
0.3963000 |
0.1726000 |
0.3549000 |
0.4315000 |
0.3335000 |
35.94 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46658343 |
rs2292485 |
G |
A |
. |
PASS |
0.3343000 |
0.3963000 |
0.1726000 |
0.3549000 |
0.4315000 |
0.3335000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46659104 |
rs7527668 |
T |
C |
. |
PASS |
0.4584000 |
0.4020000 |
0.1726000 |
0.3549000 |
0.4315000 |
0.3670000 |
37.0 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46659363 |
rs7527935 |
T |
C |
. |
PASS |
0.3343000 |
0.3963000 |
0.1726000 |
0.3549000 |
0.4315000 |
0.3335000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46660295 |
rs2292487 |
T |
C |
. |
PASS |
0.3343000 |
0.3963000 |
0.1726000 |
0.3549000 |
0.4315000 |
0.3335000 |
36.57 |
69.88 |
166 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46827214 |
rs324414 |
A |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9891000 |
0.9939000 |
0.9966000 |
36.52 |
70.0 |
25 |
992.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46870761 |
rs324420 |
C |
A |
. |
PASS |
0.3676000 |
0.3516000 |
0.1756000 |
0.2107000 |
0.1953000 |
0.2616000 |
36.52 |
69.8 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46871197 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.0 |
70.0 |
33 |
78.65 |
139.39 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
46871202 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
70.0 |
29 |
72.94 |
151.72 |
17.24 |
0 |
17.24 |
0/1 |
| chr1 |
46871986 |
rs324419 |
T |
C |
. |
PASS |
0.8585000 |
0.9265000 |
0.9950000 |
0.8519000 |
0.8088000 |
0.8844000 |
36.88 |
70.0 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46874279 |
rs45497198 |
G |
A |
. |
PASS |
0.0008000 |
0.0173000 |
0.0000000 |
0.0229000 |
0.0123000 |
0.0095847 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46944805 |
rs4660939 |
C |
T |
. |
PASS |
0.4894000 |
0.4409000 |
0.5089000 |
0.5954000 |
0.5337000 |
0.5166000 |
36.46 |
70.0 |
133 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46972605 |
rs12127101 |
T |
A |
. |
PASS |
0.3744000 |
0.1801000 |
0.2460000 |
0.1829000 |
0.2873000 |
0.2662000 |
35.91 |
70.0 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46972958 |
rs35270239 |
A |
G |
. |
PASS |
0.3744000 |
0.1801000 |
0.2460000 |
0.1829000 |
0.2873000 |
0.2662000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46976530 |
rs12045200 |
C |
G |
. |
PASS |
0.4924000 |
0.1916000 |
0.2718000 |
0.1759000 |
0.2863000 |
0.3025000 |
37.0 |
70.0 |
22 |
879.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
46976717 |
rs12045245 |
C |
T |
. |
PASS |
0.4924000 |
0.1916000 |
0.2718000 |
0.1750000 |
0.2883000 |
0.3027000 |
37.0 |
69.73 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47013364 |
rs1258041 |
T |
C |
. |
PASS |
0.9871000 |
0.9957000 |
0.6905000 |
0.9911000 |
0.8845000 |
0.9093000 |
36.6 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47014821 |
. |
A |
AAAAAG |
. |
PASS |
0.6475000 |
0.7493000 |
0.3204000 |
0.6670000 |
0.4387000 |
0.5589000 |
36.03 |
70.0 |
50 |
1000.00 |
3.00 |
80.00 |
0 |
98.00 |
0/1 |
| chr1 |
47059934 |
rs1258021 |
T |
C |
. |
PASS |
0.9902000 |
0.9986000 |
1.0000000 |
0.9980000 |
0.9990000 |
0.9966000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47075932 |
rs3818323 |
C |
T |
. |
PASS |
0.3684000 |
0.3386000 |
0.2371000 |
0.2684000 |
0.2178000 |
0.2883000 |
37.0 |
68.46 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47078637 |
rs4660947 |
T |
C |
. |
PASS |
0.5779000 |
0.5677000 |
0.9583000 |
0.5000000 |
0.7607000 |
0.6731000 |
36.22 |
70.0 |
110 |
1000.00 |
0.00 |
98.18 |
0 |
98.18 |
1/1 |
| chr1 |
47080665 |
rs11211328 |
C |
T |
. |
PASS |
0.2413000 |
0.3271000 |
0.2460000 |
0.2654000 |
0.2188000 |
0.2546000 |
36.29 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47080679 |
rs6671527 |
G |
A |
. |
PASS |
0.5643000 |
0.5202000 |
0.9256000 |
0.4751000 |
0.7137000 |
0.6422000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47080741 |
rs12029680 |
C |
T |
. |
PASS |
0.5272000 |
0.3516000 |
0.2460000 |
0.2684000 |
0.2198000 |
0.3343000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47108828 |
rs736188 |
T |
C |
. |
PASS |
0.5393000 |
0.9323000 |
0.5754000 |
0.9841000 |
0.8528000 |
0.7516000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47110712 |
rs1258053 |
C |
T |
. |
PASS |
0.3533000 |
0.5346000 |
0.2004000 |
0.6849000 |
0.5920000 |
0.4609000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47110766 |
rs3215990 |
G |
GC |
. |
PASS |
0.5363000 |
0.9323000 |
0.5754000 |
0.9841000 |
0.8528000 |
0.7508000 |
36.59 |
70.0 |
25 |
981.17 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47123898 |
rs3214697,rs67089539 |
T |
TA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.15 |
70.0 |
29 |
1000.00 |
1.86 |
89.66 |
0 |
96.55 |
1/1 |
| chr1 |
47208815 |
rs138404421 |
TG |
T |
. |
PASS |
0.0098000 |
0.0965000 |
0.0565000 |
0.1928000 |
0.2791000 |
0.1206000 |
35.8 |
70.0 |
10 |
360.66 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47264724 |
rs2297813 |
G |
T |
. |
PASS |
0.0348000 |
0.1470000 |
0.1696000 |
0.0835000 |
0.0521000 |
0.0907000 |
36.55 |
69.62 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47276728 |
rs2297812 |
G |
C |
. |
PASS |
0.6959000 |
0.3862000 |
0.5556000 |
0.3370000 |
0.4059000 |
0.4960000 |
36.69 |
70.0 |
156 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47279789 |
rs2297811 |
C |
T |
. |
PASS |
0.0204000 |
0.1945000 |
0.2510000 |
0.1471000 |
0.1636000 |
0.1444000 |
36.75 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47280746 |
rs3215983 |
GAT |
G |
. |
PASS |
0.0386000 |
0.1816000 |
0.2550000 |
0.1302000 |
0.1155000 |
0.1354000 |
35.83 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47280859 |
rs2297810 |
G |
A |
. |
PASS |
0.4614000 |
0.2334000 |
0.2808000 |
0.1312000 |
0.1728000 |
0.2708000 |
36.73 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47280884 |
rs4646491 |
C |
T |
. |
PASS |
0.0386000 |
0.1816000 |
0.2550000 |
0.1302000 |
0.1135000 |
0.1350000 |
36.15 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47282772 |
rs2297809 |
C |
T |
. |
PASS |
0.1256000 |
0.1859000 |
0.2540000 |
0.1302000 |
0.1135000 |
0.1583000 |
36.74 |
70.0 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47282888 |
rs35333582 |
C |
T |
. |
PASS |
0.0416000 |
0.1744000 |
0.2073000 |
0.1282000 |
0.1166000 |
0.1254000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47308949 |
rs11211377 |
C |
A |
. |
PASS |
0.0416000 |
0.1787000 |
0.2569000 |
0.1302000 |
0.1145000 |
0.1360000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47333836 |
rs4660963 |
G |
C |
. |
PASS |
0.9576000 |
0.5159000 |
0.8938000 |
0.4304000 |
0.7515000 |
0.7374000 |
36.2 |
69.67 |
15 |
574.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47338888 |
rs3117715 |
C |
A |
. |
PASS |
0.6430000 |
0.3098000 |
0.5020000 |
0.2227000 |
0.3374000 |
0.4243000 |
37.0 |
65.47 |
32 |
493.62 |
7.50 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
47366050 |
rs12032026 |
G |
T |
. |
PASS |
0.0061000 |
0.1455000 |
0.1925000 |
0.0805000 |
0.0695000 |
0.0903000 |
37.0 |
68.68 |
64 |
815.00 |
4.38 |
39.06 |
0 |
39.06 |
0/1 |
| chr1 |
47395973 |
rs1126743 |
G |
A |
. |
PASS |
0.3449000 |
0.6830000 |
0.4950000 |
0.7773000 |
0.6656000 |
0.5715000 |
37.0 |
69.08 |
120 |
1000.00 |
5.69 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
47396115 |
rs9333033 |
A |
T |
. |
PASS |
0.0862000 |
0.1527000 |
0.1925000 |
0.0795000 |
0.0685000 |
0.1120000 |
35.29 |
65.14 |
10 |
213.66 |
0.00 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
47398743 |
rs3890011 |
G |
C |
. |
PASS |
0.3449000 |
0.6830000 |
0.4960000 |
0.7763000 |
0.6656000 |
0.5715000 |
37.0 |
69.54 |
65 |
1000.00 |
0.42 |
56.92 |
0 |
56.92 |
0/1 |
| chr1 |
47399967 |
rs28451040 |
G |
A |
. |
PASS |
0.5280000 |
0.3112000 |
0.5040000 |
0.2237000 |
0.3344000 |
0.3942000 |
36.17 |
59.24 |
68 |
950.18 |
9.43 |
42.65 |
0 |
42.65 |
0/1 |
| chr1 |
47400059 |
rs71500102 |
A |
G |
. |
PASS |
0.9213000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9786000 |
36.05 |
54.21 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47402487 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.73 |
70.0 |
46 |
732.46 |
5.53 |
47.83 |
1 |
47.83 |
0/1 |
| chr1 |
47402487 |
rs72276548,rs67512144 |
TTGTG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
70.0 |
47 |
651.92 |
0.85 |
42.55 |
1 |
46.81 |
0/1 |
| chr1 |
47402488 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.73 |
70.0 |
45 |
735.46 |
7.27 |
48.89 |
1 |
48.89 |
0/1 |
| chr1 |
47489786 |
rs2036462 |
T |
C |
. |
PASS |
0.3880000 |
0.3660000 |
0.6915000 |
0.3032000 |
0.5409000 |
0.4589000 |
37.0 |
70.0 |
16 |
337.07 |
0.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
47495822 |
rs12141009 |
C |
T |
. |
PASS |
0.1203000 |
0.3184000 |
0.6925000 |
0.2425000 |
0.5235000 |
0.3662000 |
35.96 |
70.0 |
50 |
753.73 |
6.26 |
46.00 |
0 |
46.00 |
0/1 |
| chr1 |
47515596 |
rs1393659 |
A |
C |
. |
PASS |
0.5182000 |
0.4582000 |
0.9722000 |
0.3221000 |
0.6288000 |
0.5835000 |
37.0 |
70.0 |
14 |
130.09 |
17.14 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
47540548 |
rs146654636 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
61.15 |
64 |
890.68 |
4.05 |
42.19 |
0 |
42.19 |
0/1 |
| chr1 |
47550246 |
rs201981953 |
G |
GA |
. |
PASS |
0.4977000 |
0.4424000 |
0.9712000 |
0.3131000 |
0.6053000 |
0.5693000 |
37.0 |
47.25 |
35 |
222.53 |
35.56 |
25.71 |
0 |
25.71 |
0/1 |
| chr1 |
47571902 |
rs4926802 |
C |
T |
. |
PASS |
0.5121000 |
0.4683000 |
0.9563000 |
0.3400000 |
0.6595000 |
0.5897000 |
36.61 |
66.19 |
85 |
994.57 |
2.05 |
36.47 |
0 |
36.47 |
0/1 |
| chr1 |
47571905 |
rs28463559 |
C |
T |
. |
PASS |
0.4766000 |
0.4654000 |
0.9563000 |
0.3390000 |
0.6585000 |
0.5795000 |
36.2 |
66.07 |
77 |
964.87 |
7.97 |
38.96 |
0 |
38.96 |
0/1 |
| chr1 |
47571996 |
rs4926804 |
T |
C |
. |
PASS |
0.5182000 |
0.4712000 |
0.9643000 |
0.3410000 |
0.6687000 |
0.5952000 |
37.0 |
68.0 |
21 |
113.17 |
28.57 |
23.81 |
0 |
23.81 |
0/1 |
| chr1 |
47582242 |
rs56709867,rs145561171 |
ATTTCGT |
A |
. |
PASS |
0.2980000 |
0.3401000 |
0.6687000 |
0.2485000 |
0.5051000 |
0.4089000 |
34.82 |
69.0 |
22 |
549.78 |
19.25 |
77.27 |
0 |
77.27 |
0/1 |
| chr1 |
47582292 |
rs10890465 |
T |
G |
. |
PASS |
0.5076000 |
0.4683000 |
0.9722000 |
0.3400000 |
0.6687000 |
0.5935000 |
36.14 |
69.0 |
39 |
991.55 |
6.78 |
71.79 |
0 |
71.79 |
0/1 |
| chr1 |
47583415 |
rs6664496 |
G |
T |
. |
PASS |
0.5076000 |
0.4683000 |
0.9722000 |
0.3400000 |
0.6687000 |
0.5935000 |
35.91 |
70.0 |
24 |
338.60 |
20.45 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
47603033 |
rs34164833 |
GT |
G |
. |
PASS |
0.5008000 |
0.4640000 |
0.9335000 |
0.3479000 |
0.6452000 |
0.5803000 |
31.8 |
70.0 |
10 |
110.70 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
47607851 |
rs2056899 |
A |
T |
. |
PASS |
0.9440000 |
0.5072000 |
0.9802000 |
0.4036000 |
0.6810000 |
0.7308000 |
36.51 |
65.59 |
130 |
1000.00 |
3.25 |
56.15 |
0 |
56.15 |
0/1 |
| chr1 |
47609091 |
rs146396590 |
G |
A |
. |
PASS |
0.1725000 |
0.1671000 |
0.3194000 |
0.1402000 |
0.0971000 |
0.1801000 |
36.05 |
60.11 |
64 |
1000.00 |
5.10 |
59.38 |
0 |
59.38 |
0/1 |
| chr1 |
47609489 |
rs10789501 |
T |
C |
. |
PASS |
0.5015000 |
0.4640000 |
0.9335000 |
0.3489000 |
0.6452000 |
0.5807000 |
36.53 |
68.99 |
167 |
1000.00 |
5.10 |
46.11 |
0 |
46.11 |
0/1 |
| chr1 |
47609668 |
rs911909 |
T |
C |
. |
PASS |
0.4977000 |
0.4640000 |
0.9335000 |
0.3489000 |
0.6452000 |
0.5797000 |
37.0 |
69.7 |
35 |
697.59 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
47610293 |
rs968322 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.02 |
59.0 |
142 |
1000.00 |
4.46 |
42.96 |
0 |
42.96 |
0/1 |
| chr1 |
47614185 |
rs760440 |
G |
C |
. |
PASS |
0.5000000 |
0.4640000 |
0.9315000 |
0.3519000 |
0.6575000 |
0.5829000 |
35.67 |
66.67 |
19 |
270.11 |
11.70 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
47614485 |
rs72684327 |
A |
G |
. |
PASS |
0.2572000 |
0.1801000 |
0.3194000 |
0.1541000 |
0.1196000 |
0.2115000 |
37.0 |
68.33 |
89 |
1000.00 |
5.44 |
50.56 |
0 |
50.56 |
0/1 |
| chr1 |
47645995 |
rs2245122 |
T |
C |
. |
PASS |
0.6445000 |
0.5821000 |
0.6339000 |
0.5865000 |
0.5061000 |
0.5950000 |
36.68 |
70.0 |
74 |
1000.00 |
2.84 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
47685455 |
rs927462 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.69 |
70.0 |
119 |
1000.00 |
0.85 |
99.16 |
0 |
99.16 |
1/1 |
| chr1 |
47689842 |
rs34087210 |
C |
G |
. |
PASS |
0.2300000 |
0.4164000 |
0.0139000 |
0.6034000 |
0.4284000 |
0.3261000 |
33.57 |
70.0 |
21 |
168.54 |
19.05 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
47690992 |
rs2181222 |
C |
G |
. |
PASS |
0.6710000 |
0.2723000 |
0.6984000 |
0.2873000 |
0.4632000 |
0.5036000 |
37.0 |
70.0 |
10 |
267.45 |
5.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
47691568 |
rs145295250 |
GCAGA |
G |
. |
PASS |
0.1188000 |
0.3876000 |
0.0129000 |
0.5676000 |
0.3630000 |
0.2726000 |
35.14 |
67.73 |
124 |
1000.00 |
16.13 |
35.48 |
0 |
35.48 |
0/1 |
| chr1 |
47717189 |
rs2758735 |
A |
G |
. |
PASS |
0.1218000 |
0.4078000 |
0.4296000 |
0.5427000 |
0.5593000 |
0.3934000 |
35.0 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47735280 |
rs2742104 |
T |
C |
. |
PASS |
0.1218000 |
0.4092000 |
0.4325000 |
0.5437000 |
0.5593000 |
0.3944000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47841038 |
rs3214951 |
G |
GA |
. |
PASS |
0.0272000 |
0.3977000 |
0.2183000 |
0.5408000 |
0.4489000 |
0.3025000 |
36.0 |
70.0 |
11 |
408.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47842431 |
rs3125648 |
G |
A |
. |
PASS |
0.8381000 |
0.9769000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9537000 |
36.02 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47882497 |
rs34082359 |
C |
T |
. |
PASS |
0.2315000 |
0.2378000 |
0.2123000 |
0.3569000 |
0.3589000 |
0.2786000 |
36.11 |
70.0 |
79 |
833.53 |
0.28 |
34.18 |
0 |
34.18 |
0/1 |
| chr1 |
47883019 |
rs6666370 |
T |
C |
. |
PASS |
0.6619000 |
0.7709000 |
0.7163000 |
0.9264000 |
0.9479000 |
0.7969000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47883024 |
rs2820969 |
A |
G |
. |
PASS |
0.9811000 |
1.0000000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9948000 |
36.45 |
70.0 |
22 |
829.68 |
0.00 |
95.45 |
0 |
100.00 |
1/1 |
| chr1 |
47904000 |
rs78469326 |
G |
A |
. |
PASS |
0.0696000 |
0.0562000 |
0.1796000 |
0.0755000 |
0.2382000 |
0.1240000 |
37.0 |
70.0 |
52 |
688.19 |
6.41 |
40.38 |
0 |
40.38 |
0/1 |
| chr1 |
47904668 |
rs71053113,rs3046924 |
T |
TCCGCAC |
. |
PASS |
0.9107000 |
0.9827000 |
0.9881000 |
0.9920000 |
0.9714000 |
0.9645000 |
36.48 |
70.0 |
109 |
1000.00 |
3.63 |
96.33 |
0 |
98.17 |
1/1 |
| chr1 |
47904909 |
rs2405913 |
G |
C |
. |
PASS |
0.9985000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9996000 |
35.93 |
69.64 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
47907662 |
rs1316443 |
A |
C |
. |
PASS |
0.3434000 |
0.5274000 |
0.3988000 |
0.5636000 |
0.5859000 |
0.4716000 |
36.8 |
70.0 |
122 |
1000.00 |
1.92 |
48.36 |
0 |
48.36 |
0/1 |
| chr1 |
48043137 |
rs71572665,rs10641811 |
C |
CGAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
252.00 |
0.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
48260547 |
rs55812379 |
G |
A |
. |
PASS |
0.0023000 |
0.0216000 |
0.0000000 |
0.0497000 |
0.0051000 |
0.0145770 |
37.0 |
70.0 |
12 |
56.72 |
16.67 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
48459907 |
rs3814006 |
C |
T |
. |
PASS |
0.0144000 |
0.2233000 |
0.2530000 |
0.2793000 |
0.1227000 |
0.1657000 |
36.71 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
48555251 |
rs545475 |
A |
T |
. |
PASS |
0.4024000 |
0.4409000 |
0.3700000 |
0.3151000 |
0.5429000 |
0.4111000 |
36.66 |
69.89 |
82 |
1000.00 |
5.37 |
42.68 |
0 |
42.68 |
0/1 |
| chr1 |
48555320 |
rs4926510 |
G |
A |
. |
PASS |
0.5998000 |
0.7839000 |
0.9722000 |
0.7078000 |
0.7904000 |
0.7592000 |
36.29 |
70.0 |
32 |
569.30 |
14.71 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
48588004 |
rs214203 |
C |
T |
. |
PASS |
0.6657000 |
0.6282000 |
0.5645000 |
0.4364000 |
0.4192000 |
0.5459000 |
36.47 |
70.0 |
75 |
1000.00 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
48697733 |
rs212991 |
T |
G |
. |
PASS |
1.0000000 |
0.9986000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9994000 |
37.0 |
70.0 |
114 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
48697751 |
rs61997212 |
C |
T |
. |
PASS |
0.0174000 |
0.0879000 |
0.0000000 |
0.1700000 |
0.0767000 |
0.0659000 |
37.0 |
70.0 |
120 |
1000.00 |
1.03 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
48764419 |
rs1056042 |
C |
T |
. |
PASS |
0.0250000 |
0.3329000 |
0.3492000 |
0.4254000 |
0.3354000 |
0.2740000 |
36.17 |
69.72 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
48902552 |
rs78784453 |
G |
A |
. |
PASS |
0.0250000 |
0.3329000 |
0.3462000 |
0.4235000 |
0.3333000 |
0.2726000 |
35.84 |
68.94 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
48902977 |
rs2261674 |
G |
C |
. |
PASS |
0.9274000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9800000 |
35.91 |
68.64 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
48917316 |
rs200183446 |
A |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
11 |
264.43 |
27.27 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
48937691 |
rs2275309 |
A |
T |
. |
PASS |
0.0250000 |
0.3386000 |
0.3452000 |
0.4284000 |
0.3292000 |
0.2734000 |
36.69 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
48996880 |
. |
TC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.27 |
70.0 |
57 |
853.43 |
12.96 |
45.61 |
0 |
45.61 |
0/1 |
| chr1 |
49052933 |
rs2803277 |
T |
C |
. |
PASS |
0.4342000 |
0.3170000 |
0.0516000 |
0.3559000 |
0.5286000 |
0.3437000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
49056695 |
rs7543402 |
T |
C |
. |
PASS |
0.4349000 |
0.3141000 |
0.0506000 |
0.3489000 |
0.5276000 |
0.3417000 |
37.0 |
69.23 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
49100332 |
rs319983 |
C |
T |
. |
PASS |
0.1755000 |
0.4914000 |
0.2857000 |
0.6004000 |
0.5297000 |
0.3960000 |
37.0 |
70.0 |
27 |
429.27 |
19.94 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
49224584 |
rs1128934 |
G |
T |
. |
PASS |
0.6082000 |
0.7795000 |
0.5327000 |
0.8847000 |
0.6984000 |
0.6899000 |
36.7 |
70.0 |
98 |
1000.00 |
6.12 |
40.82 |
0 |
40.82 |
0/1 |
| chr1 |
49242211 |
rs12073598 |
C |
T |
. |
PASS |
0.1505000 |
0.1527000 |
0.1597000 |
0.0557000 |
0.0757000 |
0.1190000 |
36.08 |
70.0 |
33 |
399.21 |
19.58 |
39.39 |
0 |
39.39 |
0/1 |
| chr1 |
49511424 |
rs3934240 |
A |
G |
. |
PASS |
0.0401000 |
0.2608000 |
0.4246000 |
0.1889000 |
0.2812000 |
0.2250000 |
36.65 |
70.0 |
71 |
1000.00 |
2.40 |
47.89 |
0 |
47.89 |
0/1 |
| chr1 |
50311454 |
rs4926833 |
G |
A |
. |
PASS |
0.7973000 |
0.6167000 |
0.2460000 |
0.6561000 |
0.4980000 |
0.5745000 |
37.0 |
70.0 |
15 |
381.85 |
10.91 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
50572096 |
rs12138061 |
C |
A |
. |
PASS |
0.0416000 |
0.2666000 |
0.3482000 |
0.1869000 |
0.2904000 |
0.2123000 |
36.48 |
70.0 |
55 |
746.54 |
10.59 |
41.82 |
0 |
41.82 |
0/1 |
| chr1 |
50592601 |
rs2494887 |
G |
C |
. |
PASS |
0.3623000 |
0.5130000 |
0.5397000 |
0.4761000 |
0.5838000 |
0.4850000 |
36.25 |
70.0 |
37 |
508.33 |
16.89 |
43.24 |
0 |
43.24 |
0/1 |
| chr1 |
50661411 |
rs2480683 |
C |
T |
. |
PASS |
0.3729000 |
0.9366000 |
0.9990000 |
0.9712000 |
0.9836000 |
0.8165000 |
36.16 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
50666515 |
rs2494876 |
C |
T |
. |
PASS |
0.3442000 |
0.8804000 |
0.6528000 |
0.9006000 |
0.8804000 |
0.6971000 |
36.49 |
70.0 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
50871536 |
rs2784159 |
T |
C |
. |
PASS |
0.6899000 |
0.8646000 |
0.8423000 |
0.8300000 |
0.8548000 |
0.8051000 |
36.14 |
69.93 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
50871575 |
rs2653907 |
T |
C |
. |
PASS |
0.6906000 |
0.8646000 |
0.8433000 |
0.8300000 |
0.8548000 |
0.8055000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
50884778 |
rs2746610 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.63 |
70.0 |
138 |
1000.00 |
0.13 |
93.48 |
0 |
93.48 |
1/1 |
| chr1 |
50956212 |
rs149582773 |
C |
CAAATACAGTGG |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.41 |
70.0 |
19 |
725.56 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
50957509 |
rs1149790 |
A |
T |
. |
PASS |
0.9841000 |
0.9452000 |
1.0000000 |
0.9076000 |
0.8170000 |
0.9339000 |
36.11 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
51435946 |
rs41285700 |
C |
T |
. |
PASS |
0.0000000 |
0.0086000 |
0.0000000 |
0.0288000 |
0.0164000 |
0.0101840 |
34.0 |
70.0 |
14 |
235.54 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
51753904 |
rs17392930 |
G |
A |
. |
PASS |
0.0008000 |
0.0159000 |
0.0000000 |
0.0567000 |
0.0337000 |
0.0204000 |
36.76 |
69.6 |
92 |
1000.00 |
9.39 |
54.35 |
0 |
54.35 |
0/1 |
| chr1 |
51826921 |
rs17567 |
T |
C |
. |
PASS |
0.5673000 |
0.1643000 |
0.0119000 |
0.2038000 |
0.0900000 |
0.2334000 |
36.61 |
70.0 |
83 |
1000.00 |
18.11 |
37.35 |
0 |
37.35 |
0/1 |
| chr1 |
51873951 |
rs1065754 |
G |
A |
. |
PASS |
0.8941000 |
0.7622000 |
0.9921000 |
0.6223000 |
0.8006000 |
0.8227000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
51905949 |
rs372668692,rs67312101,rs66883041 |
CTGTG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.32 |
70.0 |
27 |
580.54 |
1.56 |
70.37 |
0 |
70.37 |
0/1 |
| chr1 |
51912788 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
29 |
622.54 |
2.30 |
62.07 |
0 |
62.07 |
0/1 |
| chr1 |
51929504 |
rs5774101 |
TA |
T |
. |
PASS |
0.6172000 |
0.1643000 |
0.0119000 |
0.2038000 |
0.0879000 |
0.2462000 |
36.14 |
70.0 |
18 |
190.19 |
12.70 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
52266242 |
rs8375 |
G |
A |
. |
PASS |
0.2224000 |
0.5937000 |
0.8234000 |
0.5298000 |
0.3885000 |
0.4890000 |
36.41 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52279650 |
rs2982846 |
T |
G |
. |
PASS |
0.9115000 |
0.8271000 |
0.9831000 |
0.6889000 |
0.7321000 |
0.8345000 |
35.91 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52290984 |
rs11205896 |
T |
G |
. |
PASS |
0.2496000 |
0.6009000 |
0.8313000 |
0.5239000 |
0.3926000 |
0.4984000 |
36.65 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52293570 |
rs2077725 |
G |
A |
. |
PASS |
0.4047000 |
0.7709000 |
0.9256000 |
0.6362000 |
0.4959000 |
0.6246000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52306063 |
rs35723519,rs60220085 |
ATCT |
A |
. |
PASS |
0.3132000 |
0.6888000 |
0.9256000 |
0.5457000 |
0.4489000 |
0.5617000 |
35.45 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52344414 |
rs736756 |
A |
C |
. |
PASS |
0.2496000 |
0.6066000 |
0.8313000 |
0.5268000 |
0.3926000 |
0.4998000 |
37.0 |
70.0 |
19 |
754.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52402956 |
rs10888742 |
G |
A |
. |
PASS |
0.6831000 |
0.9539000 |
0.9970000 |
0.9503000 |
0.9090000 |
0.8816000 |
35.98 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52535971 |
rs138950929 |
ATTGGTATAATAGTTCAT |
A |
. |
PASS |
0.4849000 |
0.5922000 |
0.5565000 |
0.6193000 |
0.6074000 |
0.5651000 |
35.06 |
70.0 |
41 |
1000.00 |
0.74 |
80.49 |
0 |
80.49 |
0/1 |
| chr1 |
52625895 |
rs597405 |
G |
A |
. |
PASS |
0.9448000 |
0.9784000 |
1.0000000 |
0.9801000 |
0.9959000 |
0.9776000 |
37.0 |
69.32 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52626181 |
rs573219 |
T |
C |
. |
PASS |
0.9652000 |
0.9798000 |
1.0000000 |
0.9801000 |
0.9959000 |
0.9832000 |
37.0 |
69.81 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52626183 |
rs573221 |
G |
A |
. |
PASS |
0.9410000 |
0.9769000 |
0.9980000 |
0.9781000 |
0.9939000 |
0.9752000 |
35.56 |
69.8 |
25 |
972.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52729432 |
rs3833531 |
C |
G |
. |
PASS |
0.0159000 |
0.4669000 |
0.4851000 |
0.3598000 |
0.2628000 |
0.2901000 |
36.2 |
70.0 |
36 |
1000.00 |
31.11 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
52820226 |
rs2820334 |
G |
A |
. |
PASS |
0.9811000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9948000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52943225 |
rs835033 |
C |
A |
. |
PASS |
0.0310000 |
0.5202000 |
0.7173000 |
0.3837000 |
0.4039000 |
0.3806000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
52991638 |
rs12123698 |
C |
T |
. |
PASS |
0.0151000 |
0.5072000 |
0.4306000 |
0.3698000 |
0.2597000 |
0.2859000 |
36.85 |
69.75 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53072454 |
rs1970951 |
T |
C |
. |
PASS |
0.9743000 |
0.8790000 |
0.7996000 |
0.8410000 |
0.8661000 |
0.8780000 |
36.84 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53072741 |
rs1970950 |
A |
G |
. |
PASS |
0.9107000 |
0.8012000 |
0.7986000 |
0.7465000 |
0.8057000 |
0.8195000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53099085 |
rs142476797 |
C |
T |
. |
PASS |
0.0023000 |
0.0216000 |
0.0198000 |
0.0318000 |
0.0460000 |
0.0230000 |
36.33 |
70.0 |
33 |
608.06 |
4.04 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
53175099 |
rs12726160 |
A |
G |
. |
PASS |
0.3502000 |
0.3213000 |
0.0179000 |
0.5070000 |
0.3845000 |
0.3175000 |
37.0 |
68.18 |
22 |
360.78 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
53237721 |
rs1412706 |
G |
A |
. |
PASS |
0.9085000 |
0.6729000 |
0.9792000 |
0.4284000 |
0.5061000 |
0.7151000 |
34.6 |
70.0 |
13 |
125.24 |
24.62 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
53237763 |
rs960570 |
A |
G |
. |
PASS |
0.0318000 |
0.4769000 |
0.3948000 |
0.3479000 |
0.3344000 |
0.2891000 |
37.0 |
70.0 |
19 |
286.27 |
12.87 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
53238324 |
rs12563825 |
G |
T |
. |
PASS |
0.0893000 |
0.4856000 |
0.3938000 |
0.3479000 |
0.3333000 |
0.3051000 |
37.0 |
70.0 |
12 |
177.88 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
53245472 |
rs9661082 |
A |
T |
. |
PASS |
0.9077000 |
0.6729000 |
0.9792000 |
0.4284000 |
0.5061000 |
0.7149000 |
35.29 |
70.0 |
18 |
189.58 |
26.98 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
53250650 |
rs6588443 |
G |
A |
. |
PASS |
0.9077000 |
0.6729000 |
0.9792000 |
0.4284000 |
0.5061000 |
0.7149000 |
36.62 |
70.0 |
107 |
1000.00 |
0.47 |
58.88 |
0 |
58.88 |
0/1 |
| chr1 |
53250915 |
rs7523761 |
T |
C |
. |
PASS |
0.5968000 |
0.5922000 |
0.6052000 |
0.4175000 |
0.4325000 |
0.5298000 |
36.76 |
70.0 |
91 |
1000.00 |
6.51 |
54.95 |
0 |
54.95 |
0/1 |
| chr1 |
53308665 |
rs532242 |
C |
G |
. |
PASS |
0.0961000 |
0.3256000 |
0.0208000 |
0.5726000 |
0.4959000 |
0.2865000 |
37.0 |
70.0 |
77 |
1000.00 |
4.95 |
41.56 |
0 |
41.56 |
0/1 |
| chr1 |
53320274 |
rs480299 |
G |
T |
. |
PASS |
0.8979000 |
0.4424000 |
0.2292000 |
0.6461000 |
0.5890000 |
0.5893000 |
37.0 |
70.0 |
80 |
766.85 |
7.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
53333116 |
rs557847 |
A |
G |
. |
PASS |
0.3880000 |
0.3372000 |
0.0198000 |
0.5885000 |
0.4949000 |
0.3680000 |
37.0 |
70.0 |
10 |
271.59 |
5.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
53370357 |
rs72670819 |
G |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
35.33 |
70.0 |
105 |
1000.00 |
1.37 |
40.95 |
0 |
40.95 |
0/1 |
| chr1 |
53387379 |
rs7552139 |
G |
C |
. |
PASS |
0.3018000 |
0.3329000 |
0.0198000 |
0.5805000 |
0.4847000 |
0.3411000 |
37.0 |
70.0 |
22 |
189.56 |
15.58 |
31.82 |
0 |
31.82 |
0/1 |
| chr1 |
53461467 |
rs72670834 |
G |
A |
. |
PASS |
0.0015000 |
0.0130000 |
0.0000000 |
0.0229000 |
0.0174000 |
0.0101840 |
37.0 |
70.0 |
16 |
211.76 |
5.36 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
53503622 |
. |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.4 |
70.0 |
10 |
123.71 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
53503624 |
. |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.4 |
70.0 |
10 |
123.71 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
53535478 |
rs1288386 |
G |
A |
. |
PASS |
0.1241000 |
0.3444000 |
0.5536000 |
0.4254000 |
0.4100000 |
0.3574000 |
36.45 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53537266 |
rs1769316 |
G |
A |
. |
PASS |
0.4977000 |
0.6499000 |
0.7371000 |
0.4652000 |
0.4755000 |
0.5561000 |
36.01 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53543112 |
rs946590 |
C |
G |
. |
PASS |
0.7988000 |
0.7219000 |
0.7788000 |
0.9513000 |
0.8957000 |
0.8337000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53544439 |
rs1288388 |
G |
A |
. |
PASS |
0.1528000 |
0.4813000 |
0.2937000 |
0.7326000 |
0.4980000 |
0.4105000 |
35.72 |
69.84 |
122 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53544597 |
rs1288389 |
T |
C |
. |
PASS |
0.3979000 |
0.5793000 |
0.3304000 |
0.8986000 |
0.6585000 |
0.5609000 |
36.75 |
69.58 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53553702 |
rs1288400 |
A |
G |
. |
PASS |
0.7867000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9429000 |
36.13 |
70.0 |
138 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53553754 |
rs1288401 |
T |
C |
. |
PASS |
0.1498000 |
0.4798000 |
0.2966000 |
0.7336000 |
0.4969000 |
0.4101000 |
36.66 |
70.0 |
179 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53558270 |
rs1288406 |
A |
G |
. |
PASS |
0.7383000 |
0.9207000 |
0.9544000 |
0.8350000 |
0.8384000 |
0.8460000 |
36.71 |
70.0 |
123 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53558583 |
rs34983198 |
C |
CTG |
. |
PASS |
0.8495000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9601000 |
36.68 |
70.0 |
18 |
700.79 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53559310 |
rs11206091 |
T |
C |
. |
PASS |
0.6755000 |
0.9078000 |
0.9563000 |
0.8360000 |
0.8507000 |
0.8307000 |
34.82 |
70.0 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53571288 |
rs1288422 |
C |
G |
. |
PASS |
0.8661000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9645000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53592963 |
rs12097556 |
G |
A |
. |
PASS |
0.4410000 |
0.2522000 |
0.2758000 |
0.2306000 |
0.1616000 |
0.2847000 |
36.18 |
70.0 |
61 |
1000.00 |
6.93 |
72.13 |
0 |
72.13 |
0/1 |
| chr1 |
53593017 |
rs1679965 |
T |
A |
. |
PASS |
0.3805000 |
0.6268000 |
0.6696000 |
0.5944000 |
0.6544000 |
0.5693000 |
36.72 |
70.0 |
102 |
1000.00 |
6.98 |
42.16 |
0 |
42.16 |
0/1 |
| chr1 |
53593163 |
rs12240252 |
G |
A |
. |
PASS |
0.1309000 |
0.1816000 |
0.2063000 |
0.2266000 |
0.1125000 |
0.1687000 |
35.67 |
70.0 |
19 |
274.27 |
1.17 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
53662823 |
rs72673121 |
C |
A |
. |
PASS |
0.0136000 |
0.1441000 |
0.0496000 |
0.2068000 |
0.0706000 |
0.0889000 |
35.13 |
70.0 |
92 |
1000.00 |
4.78 |
48.91 |
0 |
48.91 |
0/1 |
| chr1 |
53676448 |
rs1799821 |
G |
A |
. |
PASS |
0.2564000 |
0.3818000 |
0.7242000 |
0.5179000 |
0.2188000 |
0.4131000 |
37.0 |
69.52 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53679229 |
rs1799822 |
A |
G |
. |
PASS |
0.0227000 |
0.1542000 |
0.0853000 |
0.2068000 |
0.0736000 |
0.1004000 |
37.0 |
70.0 |
57 |
1000.00 |
1.10 |
61.40 |
0 |
61.40 |
0/1 |
| chr1 |
53681699 |
rs1134688 |
T |
G |
. |
PASS |
0.0227000 |
0.1542000 |
0.0813000 |
0.2078000 |
0.0736000 |
0.0998000 |
37.0 |
70.0 |
66 |
1000.00 |
9.17 |
56.06 |
0 |
56.06 |
0/1 |
| chr1 |
53683908 |
rs72673130 |
G |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
35 |
944.06 |
6.59 |
74.29 |
0 |
74.29 |
0/1 |
| chr1 |
53683921 |
rs12140585 |
C |
G |
. |
PASS |
0.0575000 |
0.1772000 |
0.4990000 |
0.3111000 |
0.1391000 |
0.2298000 |
37.0 |
70.0 |
20 |
112.03 |
10.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
53684525 |
rs436887 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.13 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53686383 |
rs1679913 |
C |
G |
. |
PASS |
0.9818000 |
0.7839000 |
0.9325000 |
0.6789000 |
0.5409000 |
0.7975000 |
36.5 |
69.17 |
24 |
950.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53712727 |
rs5174 |
C |
T |
. |
PASS |
0.0166000 |
0.1772000 |
0.0327000 |
0.3956000 |
0.1503000 |
0.1444000 |
36.69 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53716416 |
rs3737983 |
G |
A |
. |
PASS |
0.2466000 |
0.2867000 |
0.6984000 |
0.4076000 |
0.2229000 |
0.3708000 |
35.5 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53723190 |
rs869987 |
G |
T |
. |
PASS |
0.2579000 |
0.2867000 |
0.7579000 |
0.4036000 |
0.2260000 |
0.3856000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53732315 |
rs2297660 |
G |
T |
. |
PASS |
0.2042000 |
0.2824000 |
0.6319000 |
0.3956000 |
0.1820000 |
0.3353000 |
36.77 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53736613 |
rs7542607 |
A |
G |
. |
PASS |
0.2042000 |
0.2824000 |
0.6319000 |
0.3956000 |
0.1820000 |
0.3353000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53742506 |
rs56300220 |
A |
G |
. |
PASS |
0.2837000 |
0.2709000 |
0.6974000 |
0.3708000 |
0.2188000 |
0.3700000 |
36.45 |
70.0 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53755151 |
rs12035577 |
T |
C |
. |
PASS |
0.1800000 |
0.2939000 |
0.6032000 |
0.4175000 |
0.3047000 |
0.3530000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
53792651 |
rs3820198 |
A |
C |
. |
PASS |
0.9327000 |
0.2997000 |
0.4841000 |
0.3867000 |
0.4479000 |
0.5503000 |
36.54 |
70.0 |
63 |
847.78 |
1.10 |
41.27 |
0 |
41.27 |
0/1 |
| chr1 |
53793511 |
rs4926972 |
T |
C |
. |
PASS |
0.9327000 |
0.2997000 |
0.4841000 |
0.3867000 |
0.4479000 |
0.5503000 |
37.0 |
69.39 |
57 |
1000.00 |
0.91 |
54.39 |
0 |
57.89 |
0/1 |
| chr1 |
53974987 |
rs10749691 |
G |
T |
. |
PASS |
0.3222000 |
0.6744000 |
0.5248000 |
0.8101000 |
0.7526000 |
0.5939000 |
36.31 |
69.43 |
55 |
1000.00 |
3.64 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
54003748 |
rs12739933 |
G |
A |
. |
PASS |
0.4236000 |
0.4294000 |
0.4048000 |
0.4135000 |
0.3354000 |
0.4014000 |
35.93 |
70.0 |
122 |
1000.00 |
6.12 |
54.92 |
0 |
54.92 |
0/1 |
| chr1 |
54060016 |
rs35227000 |
G |
C |
. |
PASS |
0.1104000 |
0.1643000 |
0.1885000 |
0.2962000 |
0.3292000 |
0.2137000 |
35.71 |
70.0 |
62 |
910.30 |
7.14 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
54060248 |
rs4307514 |
T |
C |
. |
PASS |
0.1074000 |
0.1599000 |
0.1885000 |
0.2962000 |
0.3425000 |
0.2149000 |
36.21 |
68.69 |
114 |
1000.00 |
6.21 |
53.51 |
0 |
53.51 |
0/1 |
| chr1 |
54196929 |
rs808860 |
C |
T |
. |
PASS |
0.3570000 |
0.5605000 |
0.4315000 |
0.6710000 |
0.6646000 |
0.5234000 |
35.43 |
70.0 |
99 |
1000.00 |
10.32 |
46.46 |
0 |
46.46 |
0/1 |
| chr1 |
54258880 |
rs2273139 |
C |
T |
. |
PASS |
0.0598000 |
0.0778000 |
0.0972000 |
0.1441000 |
0.0603000 |
0.0869000 |
37.0 |
70.0 |
36 |
485.73 |
20.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
54259000 |
rs72662316 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0003994 |
34.82 |
70.0 |
15 |
357.84 |
1.21 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
54284551 |
rs72662323 |
T |
C |
. |
PASS |
0.0598000 |
0.0778000 |
0.0972000 |
0.1441000 |
0.0603000 |
0.0869000 |
37.0 |
70.0 |
12 |
182.04 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
54298297 |
rs72662336 |
T |
C |
. |
PASS |
0.0582000 |
0.0591000 |
0.0982000 |
0.1352000 |
0.0542000 |
0.0811000 |
37.0 |
70.0 |
19 |
244.50 |
2.63 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
54331763 |
rs1883453 |
A |
G |
. |
PASS |
0.6884000 |
0.3199000 |
0.6766000 |
0.4155000 |
0.4397000 |
0.5315000 |
34.0 |
70.0 |
10 |
92.51 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
54344282 |
rs2272928 |
C |
A |
. |
PASS |
0.7610000 |
0.5014000 |
0.8502000 |
0.5676000 |
0.7035000 |
0.6929000 |
36.31 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
54354658 |
rs2294508 |
T |
G |
. |
PASS |
0.2769000 |
0.2363000 |
0.2738000 |
0.1938000 |
0.2771000 |
0.2540000 |
37.0 |
70.0 |
14 |
297.17 |
4.76 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
54370306 |
rs2294512 |
G |
A |
. |
PASS |
0.5038000 |
0.2651000 |
0.6270000 |
0.2545000 |
0.3558000 |
0.4165000 |
37.0 |
70.0 |
34 |
658.84 |
8.98 |
55.88 |
0 |
55.88 |
0/1 |
| chr1 |
54375570 |
rs2235544 |
C |
A |
. |
PASS |
0.1626000 |
0.6412000 |
0.4613000 |
0.5249000 |
0.6667000 |
0.4603000 |
37.0 |
70.0 |
13 |
300.18 |
3.42 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
54375701 |
rs11206244 |
C |
T |
. |
PASS |
0.1589000 |
0.5173000 |
0.1468000 |
0.3678000 |
0.4888000 |
0.3125000 |
36.29 |
70.0 |
47 |
1000.00 |
1.13 |
72.34 |
0 |
72.34 |
0/1 |
| chr1 |
54477726 |
rs55766128 |
T |
G |
. |
PASS |
0.7292000 |
0.5648000 |
0.5942000 |
0.4304000 |
0.3333000 |
0.5419000 |
37.0 |
70.0 |
13 |
258.42 |
0.00 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
54483694 |
rs34764952 |
C |
T |
. |
PASS |
0.0900000 |
0.4942000 |
0.5565000 |
0.4105000 |
0.2955000 |
0.3444000 |
37.0 |
70.0 |
34 |
575.28 |
11.76 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
54513132 |
rs41296145 |
T |
C |
. |
PASS |
0.0038000 |
0.0187000 |
0.0000000 |
0.0408000 |
0.0061000 |
0.0129790 |
37.0 |
70.0 |
13 |
95.48 |
15.38 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
54561916 |
rs7555099 |
C |
T |
. |
PASS |
0.8971000 |
0.5692000 |
0.6002000 |
0.3956000 |
0.3272000 |
0.5799000 |
37.0 |
70.0 |
10 |
104.51 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
54602347 |
rs2183302 |
G |
A |
. |
PASS |
0.6377000 |
0.8905000 |
0.9851000 |
0.8588000 |
0.9468000 |
0.8474000 |
36.06 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
54605318 |
rs3841798,rs76608277 |
T |
TGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.69 |
70.0 |
96 |
1000.00 |
52.50 |
31.25 |
0 |
36.46 |
0/1 |
| chr1 |
54605319 |
rs36013100,rs66537746,rs79249469 |
G |
GC |
. |
PASS |
0.3631000 |
0.6614000 |
0.3889000 |
0.6521000 |
0.4254000 |
0.4798000 |
36.19 |
70.0 |
95 |
1000.00 |
27.37 |
60.00 |
0 |
61.05 |
0/1 |
| chr1 |
54606804 |
rs3766465 |
C |
T |
. |
PASS |
0.7723000 |
0.7939000 |
0.8681000 |
0.8509000 |
0.8425000 |
0.8241000 |
36.62 |
70.0 |
127 |
1000.00 |
0.80 |
49.61 |
0 |
49.61 |
0/1 |
| chr1 |
54607051 |
rs671103 |
A |
G |
. |
PASS |
0.9871000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9966000 |
36.87 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
54607157 |
rs671539 |
G |
A |
. |
PASS |
0.8374000 |
0.8084000 |
0.9742000 |
0.8539000 |
0.8998000 |
0.8764000 |
37.0 |
70.0 |
19 |
286.28 |
8.19 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
54618435 |
rs7528345 |
A |
T |
. |
PASS |
0.4561000 |
0.6542000 |
0.6935000 |
0.7485000 |
0.7434000 |
0.6462000 |
34.5 |
69.17 |
24 |
902.79 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
54670658 |
rs36006392,rs71579999 |
CCTT |
C |
. |
PASS |
0.0151000 |
0.1571000 |
0.0000000 |
0.2555000 |
0.0450000 |
0.0859000 |
35.35 |
70.0 |
38 |
883.59 |
0.81 |
68.42 |
0 |
68.42 |
0/1 |
| chr1 |
54681920 |
rs13571 |
G |
C |
. |
PASS |
0.6135000 |
0.6398000 |
0.4028000 |
0.7922000 |
0.4734000 |
0.5833000 |
36.73 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
54690954 |
rs3088379 |
T |
C |
. |
PASS |
0.5915000 |
0.3977000 |
0.3095000 |
0.4453000 |
0.5061000 |
0.4619000 |
36.71 |
70.0 |
79 |
1000.00 |
0.43 |
51.90 |
0 |
51.90 |
0/1 |
| chr1 |
54692854 |
rs3058961 |
A |
AGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.27 |
68.09 |
33 |
419.39 |
22.22 |
27.27 |
0 |
42.42 |
0/1 |
| chr1 |
54707070 |
rs72664198 |
G |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.37 |
70.0 |
38 |
630.63 |
5.26 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
54871566 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
12 |
160.46 |
16.67 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
54871566 |
. |
ACCGC |
A |
. |
PASS |
0.2398000 |
0.6787000 |
0.4841000 |
0.5656000 |
0.5562000 |
0.4770000 |
35.0 |
70.0 |
14 |
154.45 |
19.05 |
42.86 |
1 |
42.86 |
0/1 |
| chr1 |
54871567 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
12 |
160.46 |
16.67 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
54871709 |
. |
T |
TCGCCGCCGCCGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
69.76 |
31 |
766.58 |
14.96 |
70.97 |
0 |
70.97 |
0/1 |
| chr1 |
55002631 |
rs6588519 |
A |
G |
. |
PASS |
0.0219000 |
0.2637000 |
0.3244000 |
0.3777000 |
0.4622000 |
0.2738000 |
35.91 |
68.77 |
73 |
642.73 |
13.20 |
30.14 |
0 |
30.14 |
0/1 |
| chr1 |
55014099 |
rs299874 |
C |
T |
. |
PASS |
0.5287000 |
0.8156000 |
0.9157000 |
0.7326000 |
0.8558000 |
0.7512000 |
36.33 |
68.89 |
35 |
602.04 |
12.38 |
51.43 |
0 |
51.43 |
0/1 |
| chr1 |
55014102 |
rs12133271 |
T |
C |
. |
PASS |
0.0371000 |
0.1772000 |
0.1002000 |
0.1034000 |
0.1534000 |
0.1052000 |
37.0 |
68.75 |
33 |
536.53 |
10.98 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
55014160 |
rs299872 |
C |
T |
. |
PASS |
0.2163000 |
0.7983000 |
0.7560000 |
0.7256000 |
0.8364000 |
0.6290000 |
37.0 |
70.0 |
13 |
220.79 |
0.00 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
55035269 |
rs300279 |
T |
C |
. |
PASS |
0.5514000 |
0.5504000 |
0.4911000 |
0.5815000 |
0.6094000 |
0.5565000 |
36.71 |
70.0 |
168 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55035348 |
rs300278 |
G |
T |
. |
PASS |
0.1747000 |
0.3271000 |
0.2560000 |
0.5080000 |
0.3088000 |
0.3053000 |
35.88 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55035395 |
rs300277 |
A |
G |
. |
PASS |
0.3177000 |
0.4280000 |
0.4355000 |
0.5507000 |
0.5777000 |
0.4543000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55069986 |
rs746503 |
T |
C |
. |
PASS |
0.4917000 |
0.5562000 |
0.4315000 |
0.6402000 |
0.4530000 |
0.5108000 |
36.82 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55072726 |
rs1616691 |
T |
C |
. |
PASS |
0.5106000 |
0.4222000 |
0.2460000 |
0.6183000 |
0.4018000 |
0.4455000 |
36.73 |
69.56 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55074840 |
rs1617287 |
T |
A |
. |
PASS |
0.0946000 |
0.3530000 |
0.1825000 |
0.5477000 |
0.2873000 |
0.2768000 |
36.11 |
70.0 |
72 |
850.45 |
1.85 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
55075452 |
rs1368883 |
G |
A |
. |
PASS |
0.1959000 |
0.3588000 |
0.1815000 |
0.5388000 |
0.2873000 |
0.3023000 |
36.0 |
70.0 |
95 |
1000.00 |
7.32 |
50.53 |
0 |
50.53 |
0/1 |
| chr1 |
55078046 |
rs1655528 |
T |
C |
. |
PASS |
0.5265000 |
0.7089000 |
0.6002000 |
0.9215000 |
0.6881000 |
0.6775000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55080612 |
rs112970628,rs71045199 |
G |
GGTGTGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.57 |
70.0 |
11 |
244.99 |
3.03 |
54.55 |
0 |
72.73 |
0/1 |
| chr1 |
55085499 |
rs11206396 |
T |
C |
. |
PASS |
0.6952000 |
0.5317000 |
0.4931000 |
0.4960000 |
0.6687000 |
0.5867000 |
36.47 |
70.0 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55085703 |
rs11583256 |
G |
T |
. |
PASS |
0.0076000 |
0.0202000 |
0.0476000 |
0.0378000 |
0.0613000 |
0.0339000 |
34.82 |
70.0 |
54 |
671.75 |
3.37 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
55118566 |
rs1655520 |
C |
G |
. |
PASS |
0.8116000 |
0.9914000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9487000 |
36.72 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55119515 |
rs1655519 |
T |
G |
. |
PASS |
0.4251000 |
0.3833000 |
0.4157000 |
0.3280000 |
0.5665000 |
0.4255000 |
36.69 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55119546 |
rs1655518 |
A |
G |
. |
PASS |
0.8283000 |
0.9914000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9531000 |
36.86 |
70.0 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55130972 |
rs471724 |
C |
T |
. |
PASS |
0.8880000 |
0.8487000 |
0.9226000 |
0.7445000 |
0.9131000 |
0.8656000 |
37.0 |
69.66 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55134487 |
rs478513 |
G |
A |
. |
PASS |
0.3124000 |
0.4784000 |
0.3790000 |
0.2783000 |
0.5501000 |
0.3884000 |
36.72 |
69.07 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55136529 |
rs480963 |
T |
C |
. |
PASS |
0.2670000 |
0.4669000 |
0.3720000 |
0.2863000 |
0.5706000 |
0.3790000 |
36.13 |
69.57 |
138 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55138673 |
rs564400 |
C |
T |
. |
PASS |
0.2564000 |
0.2795000 |
0.2946000 |
0.2366000 |
0.4652000 |
0.3041000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55139741 |
rs570218 |
A |
G |
. |
PASS |
0.9259000 |
0.8559000 |
0.9980000 |
0.8032000 |
0.9448000 |
0.9097000 |
36.01 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55152223 |
rs17110938 |
C |
T |
. |
PASS |
0.1490000 |
0.2608000 |
0.3075000 |
0.1551000 |
0.1830000 |
0.2043000 |
37.0 |
70.0 |
14 |
384.86 |
1.30 |
78.57 |
0 |
78.57 |
0/1 |
| chr1 |
55165942 |
rs2304310 |
G |
A |
. |
PASS |
0.1649000 |
0.1412000 |
0.0784000 |
0.2078000 |
0.2321000 |
0.1659000 |
37.0 |
70.0 |
22 |
444.32 |
4.90 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
55166842 |
rs1065173 |
C |
T |
. |
PASS |
0.2640000 |
0.2248000 |
0.1141000 |
0.3191000 |
0.3180000 |
0.2500000 |
36.35 |
70.0 |
84 |
1000.00 |
2.70 |
44.05 |
0 |
44.05 |
0/1 |
| chr1 |
55167064 |
rs11591196 |
C |
T |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0009984 |
35.4 |
70.0 |
31 |
450.01 |
16.13 |
45.16 |
0 |
48.39 |
0/1 |
| chr1 |
55167773 |
rs646356 |
T |
A |
. |
PASS |
0.9871000 |
0.9251000 |
0.9365000 |
0.8320000 |
0.8885000 |
0.9179000 |
36.6 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55168084 |
rs644955 |
C |
T |
. |
PASS |
0.7073000 |
0.5403000 |
0.7560000 |
0.4920000 |
0.6483000 |
0.6392000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55182300 |
rs1147990 |
T |
A |
. |
PASS |
0.5038000 |
0.6081000 |
0.9683000 |
0.5477000 |
0.7485000 |
0.6683000 |
37.0 |
69.79 |
58 |
1000.00 |
20.69 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
55223388 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
29.0 |
70.0 |
35 |
60.62 |
165.71 |
17.14 |
0 |
17.14 |
0/1 |
| chr1 |
55224131 |
rs2270004 |
T |
C |
. |
PASS |
0.1596000 |
0.1398000 |
0.1756000 |
0.1471000 |
0.1687000 |
0.1593000 |
37.0 |
70.0 |
62 |
1000.00 |
5.93 |
59.68 |
0 |
59.68 |
0/1 |
| chr1 |
55224751 |
rs11577368 |
C |
A |
. |
PASS |
0.0552000 |
0.1297000 |
0.1756000 |
0.1471000 |
0.1677000 |
0.1302000 |
35.7 |
70.0 |
86 |
1000.00 |
15.08 |
43.02 |
0 |
43.02 |
0/1 |
| chr1 |
55247518 |
rs3815225 |
C |
A |
. |
PASS |
0.3623000 |
0.2017000 |
0.4762000 |
0.0964000 |
0.2249000 |
0.2827000 |
37.0 |
70.0 |
11 |
139.13 |
3.64 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
55251689 |
rs586462 |
T |
C |
. |
PASS |
0.9970000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9990000 |
36.79 |
69.98 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55253346 |
rs2269999 |
G |
A |
. |
PASS |
0.3351000 |
0.2450000 |
0.4702000 |
0.2346000 |
0.3344000 |
0.3295000 |
35.5 |
70.0 |
42 |
807.58 |
14.29 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
55253575 |
rs665118 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.71 |
69.52 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55253594 |
rs2269998 |
G |
A |
. |
PASS |
0.2542000 |
0.1960000 |
0.5149000 |
0.1014000 |
0.2229000 |
0.2618000 |
34.18 |
70.0 |
35 |
524.24 |
8.40 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
55266845 |
rs1147984 |
C |
T |
. |
PASS |
0.4985000 |
0.4611000 |
0.2788000 |
0.5964000 |
0.6575000 |
0.4998000 |
36.59 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55271774 |
rs757581 |
A |
G |
. |
PASS |
0.5847000 |
0.4741000 |
0.3988000 |
0.5964000 |
0.6656000 |
0.5501000 |
36.43 |
70.0 |
212 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55273580 |
rs9782980 |
G |
T |
. |
PASS |
0.5023000 |
0.4568000 |
0.2708000 |
0.5905000 |
0.6605000 |
0.4980000 |
36.11 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55277430 |
rs10788986 |
T |
A |
. |
PASS |
0.4425000 |
0.4323000 |
0.2411000 |
0.6083000 |
0.6544000 |
0.4752000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55277599 |
rs600499 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
69.32 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55319902 |
rs718265 |
A |
G |
. |
PASS |
0.6256000 |
0.5850000 |
0.4167000 |
0.6809000 |
0.8231000 |
0.6276000 |
36.77 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55330966 |
rs611057 |
T |
C |
. |
PASS |
0.9592000 |
1.0000000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9886000 |
36.41 |
69.75 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55384052 |
rs34608319 |
G |
GA |
. |
PASS |
0.6740000 |
0.9510000 |
0.8274000 |
0.9324000 |
0.9816000 |
0.8552000 |
36.04 |
68.12 |
25 |
969.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55446664 |
rs2253467 |
G |
C |
. |
PASS |
0.4107000 |
0.7522000 |
0.4891000 |
0.7724000 |
0.7311000 |
0.6090000 |
36.69 |
69.74 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55446671 |
rs2253466 |
C |
T |
. |
PASS |
0.4107000 |
0.7522000 |
0.4871000 |
0.7724000 |
0.7311000 |
0.6086000 |
36.59 |
69.77 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55446697 |
rs2253465 |
G |
A |
. |
PASS |
0.4100000 |
0.7522000 |
0.4861000 |
0.7724000 |
0.7321000 |
0.6084000 |
36.65 |
69.62 |
104 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55457710 |
rs2500326 |
G |
A |
. |
PASS |
0.8162000 |
0.8876000 |
0.6379000 |
0.8002000 |
0.8190000 |
0.7875000 |
37.0 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55457815 |
rs2495513 |
C |
T |
. |
PASS |
0.8162000 |
0.8890000 |
0.6379000 |
0.8002000 |
0.8180000 |
0.7875000 |
36.16 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55464790 |
rs2500341 |
C |
G |
. |
PASS |
0.5030000 |
0.7032000 |
0.3284000 |
0.7594000 |
0.7485000 |
0.5950000 |
35.59 |
70.0 |
17 |
646.44 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55505732 |
rs2495482 |
A |
G |
. |
PASS |
0.8101000 |
0.8818000 |
0.9444000 |
0.9493000 |
0.9816000 |
0.9085000 |
36.81 |
70.0 |
104 |
1000.00 |
1.43 |
59.62 |
0 |
59.62 |
0/1 |
| chr1 |
55518316 |
rs2483205 |
C |
T |
. |
PASS |
0.5053000 |
0.3242000 |
0.1964000 |
0.4503000 |
0.4397000 |
0.3942000 |
36.62 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55518467 |
rs2495477 |
A |
G |
. |
PASS |
0.7526000 |
0.2983000 |
0.2272000 |
0.3996000 |
0.5133000 |
0.4663000 |
36.89 |
70.0 |
114 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55518528 |
rs494198 |
C |
A |
. |
PASS |
0.4766000 |
0.7695000 |
0.8026000 |
0.6451000 |
0.5409000 |
0.6292000 |
36.31 |
70.0 |
60 |
1000.00 |
9.05 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
55521899 |
rs66634270,rs67995625,rs201349983 |
GGGGCGGA |
G |
. |
PASS |
0.9735000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9928000 |
36.56 |
69.53 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55521913 |
rs45573036 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
33 |
661.84 |
21.69 |
57.58 |
0 |
57.58 |
0/1 |
| chr1 |
55523033 |
rs509504 |
A |
G |
. |
PASS |
0.9319000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9818000 |
36.74 |
70.0 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55523984 |
rs584626 |
C |
T |
. |
PASS |
0.7504000 |
0.8963000 |
0.9881000 |
0.8211000 |
0.9059000 |
0.8630000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55524116 |
rs585131 |
C |
T |
. |
PASS |
0.7746000 |
0.8948000 |
0.9881000 |
0.8211000 |
0.9059000 |
0.8692000 |
36.0 |
70.0 |
24 |
942.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55524197 |
rs540796 |
A |
G |
. |
PASS |
0.7746000 |
0.8948000 |
0.9881000 |
0.8211000 |
0.9059000 |
0.8692000 |
36.71 |
69.76 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55524237 |
rs562556 |
G |
A |
. |
PASS |
0.7746000 |
0.8948000 |
0.9881000 |
0.8211000 |
0.9049000 |
0.8690000 |
35.81 |
69.8 |
101 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55524339 |
rs368103912,rs56215417 |
CGTGTGTGTGTGTGT |
C |
. |
PASS |
0.8442000 |
0.9236000 |
0.9931000 |
0.8787000 |
0.9438000 |
0.9115000 |
34.71 |
70.0 |
131 |
1000.00 |
0.18 |
95.42 |
0 |
100.00 |
1/1 |
| chr1 |
55524387 |
rs563641 |
T |
C |
. |
PASS |
0.7746000 |
0.8948000 |
0.9861000 |
0.8201000 |
0.9059000 |
0.8686000 |
35.31 |
70.0 |
78 |
1000.00 |
1.90 |
98.72 |
0 |
100.00 |
1/1 |
| chr1 |
55525400 |
rs483462 |
G |
A |
. |
PASS |
0.3676000 |
0.7925000 |
0.8730000 |
0.7087000 |
0.7648000 |
0.6743000 |
36.84 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55527323 |
rs630431 |
G |
A |
. |
PASS |
0.3699000 |
0.7939000 |
0.8720000 |
0.7068000 |
0.7648000 |
0.6745000 |
36.71 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55529187 |
rs505151 |
G |
A |
. |
PASS |
0.7118000 |
0.9640000 |
0.9603000 |
0.9652000 |
0.9744000 |
0.8990000 |
36.11 |
69.87 |
149 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55538385 |
rs654674 |
T |
C |
. |
PASS |
0.8767000 |
0.9150000 |
0.9970000 |
0.8390000 |
0.9284000 |
0.9087000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55538552 |
rs10493176 |
T |
G |
. |
PASS |
0.0030000 |
0.0418000 |
0.0575000 |
0.1133000 |
0.1595000 |
0.0721000 |
36.2 |
70.0 |
21 |
514.72 |
13.33 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
55541174 |
rs487230 |
A |
G |
. |
PASS |
0.2648000 |
0.8473000 |
0.9187000 |
0.7714000 |
0.8456000 |
0.6923000 |
36.4 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55555285 |
rs548852 |
G |
A |
. |
PASS |
0.2617000 |
0.8473000 |
0.9196000 |
0.7714000 |
0.8436000 |
0.6913000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55557859 |
rs34673217 |
A |
ATT |
. |
PASS |
0.8767000 |
0.9150000 |
0.9970000 |
0.8390000 |
0.9284000 |
0.9087000 |
37.0 |
70.0 |
13 |
465.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55557864 |
rs3736992 |
C |
T |
. |
PASS |
0.2625000 |
0.8473000 |
0.9196000 |
0.7714000 |
0.8436000 |
0.6915000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55562125 |
rs580485 |
G |
T |
. |
PASS |
0.8767000 |
0.9150000 |
0.9970000 |
0.8390000 |
0.9284000 |
0.9087000 |
35.2 |
70.0 |
20 |
759.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55566411 |
rs67540253,rs2307833 |
TTAGTC |
T |
. |
PASS |
0.4622000 |
0.8732000 |
0.9593000 |
0.8091000 |
0.8722000 |
0.7690000 |
34.73 |
70.0 |
11 |
347.65 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55567410 |
rs615652 |
A |
G |
. |
PASS |
0.8570000 |
0.9150000 |
0.9970000 |
0.8419000 |
0.9294000 |
0.9044000 |
36.59 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55571729 |
rs56298306 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0003994 |
37.0 |
70.0 |
13 |
179.02 |
12.82 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
55572867 |
rs594226 |
G |
A |
. |
PASS |
0.2632000 |
0.8473000 |
0.9196000 |
0.7704000 |
0.8456000 |
0.6919000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55638075 |
rs1165222 |
G |
A |
. |
PASS |
0.8729000 |
0.9164000 |
0.9950000 |
0.8370000 |
0.9284000 |
0.9071000 |
35.85 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55643837 |
rs11350615 |
TA |
T |
. |
PASS |
0.8570000 |
0.9135000 |
0.9970000 |
0.8410000 |
0.9294000 |
0.9040000 |
36.14 |
70.0 |
22 |
854.88 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
55672203 |
. |
AAGG |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0070000 |
0.0000000 |
0.0013978 |
37.0 |
70.0 |
10 |
178.49 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
55672330 |
. |
T |
TAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
52 |
1000.00 |
19.23 |
25.00 |
0 |
76.92 |
0/1 |
| chr1 |
55672330 |
rs34127046 |
T |
TA |
. |
PASS |
0.4660000 |
0.5159000 |
0.5198000 |
0.5368000 |
0.5010000 |
0.5048000 |
35.86 |
70.0 |
52 |
1000.00 |
3.85 |
50.00 |
0 |
76.92 |
0/1 |
| chr1 |
55939707 |
rs10652554,rs10652555 |
A |
AT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.11 |
70.0 |
30 |
1000.00 |
4.00 |
83.33 |
0 |
100.00 |
0/1 |
| chr1 |
55939760 |
rs1499679 |
C |
T |
. |
PASS |
0.0250000 |
0.4885000 |
0.4196000 |
0.5179000 |
0.3384000 |
0.3289000 |
37.0 |
70.0 |
22 |
110.17 |
25.45 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
56291878 |
rs4379710 |
G |
A |
. |
PASS |
0.8737000 |
0.8919000 |
0.9921000 |
0.8191000 |
0.8834000 |
0.8910000 |
35.2 |
70.0 |
20 |
763.89 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
56291907 |
rs4333889 |
A |
G |
. |
PASS |
0.8744000 |
0.8919000 |
0.9911000 |
0.8191000 |
0.8834000 |
0.8910000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
56614762 |
rs1230004 |
C |
T |
. |
PASS |
0.6331000 |
0.4294000 |
0.3204000 |
0.3807000 |
0.4172000 |
0.4491000 |
36.08 |
70.0 |
41 |
375.13 |
5.25 |
31.71 |
0 |
31.71 |
0/1 |
| chr1 |
56614831 |
rs1230003 |
T |
G |
. |
PASS |
0.4349000 |
0.4150000 |
0.3204000 |
0.3797000 |
0.4172000 |
0.3946000 |
37.0 |
70.0 |
24 |
350.61 |
9.09 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
57002613 |
rs11583161 |
G |
A |
. |
PASS |
0.3374000 |
0.0403000 |
0.1766000 |
0.0239000 |
0.0491000 |
0.1446000 |
37.0 |
70.0 |
50 |
819.52 |
15.67 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
57002627 |
rs1136164 |
C |
T |
. |
PASS |
0.2337000 |
0.0159000 |
0.1756000 |
0.0119000 |
0.0399000 |
0.1094000 |
37.0 |
70.0 |
57 |
965.53 |
8.52 |
49.12 |
0 |
49.12 |
0/1 |
| chr1 |
57085030 |
. |
C |
CT |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.75 |
70.0 |
17 |
641.02 |
17.65 |
23.53 |
0 |
100.00 |
0/1 |
| chr1 |
57085030 |
rs3991780 |
C |
CTT |
. |
PASS |
0.1929000 |
0.2435000 |
0.2312000 |
0.4364000 |
0.2362000 |
0.2650000 |
34.5 |
70.0 |
17 |
641.02 |
5.43 |
76.47 |
0 |
100.00 |
0/1 |
| chr1 |
57111169 |
rs61772962 |
C |
G |
. |
PASS |
0.3918000 |
0.2882000 |
0.1558000 |
0.4652000 |
0.2035000 |
0.3079000 |
37.0 |
70.0 |
130 |
1000.00 |
3.81 |
48.46 |
0 |
48.46 |
0/1 |
| chr1 |
57158051 |
rs17848595 |
G |
A |
. |
PASS |
0.2231000 |
0.0677000 |
0.2252000 |
0.0437000 |
0.2628000 |
0.1737000 |
36.35 |
70.0 |
83 |
1000.00 |
10.49 |
44.58 |
0 |
44.58 |
0/1 |
| chr1 |
57185818 |
rs857141 |
A |
G |
. |
PASS |
0.9811000 |
0.7954000 |
0.8254000 |
0.6690000 |
0.8344000 |
0.8327000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
57209695 |
rs1156845 |
T |
C |
. |
PASS |
0.0477000 |
0.2421000 |
0.2004000 |
0.1243000 |
0.1380000 |
0.1384000 |
37.0 |
70.0 |
37 |
357.41 |
25.23 |
32.43 |
0 |
32.43 |
0/1 |
| chr1 |
57219539 |
rs72668350 |
C |
A |
. |
PASS |
0.0008000 |
0.0043000 |
0.0000000 |
0.0209000 |
0.0000000 |
0.0049920 |
37.0 |
70.0 |
45 |
746.88 |
7.27 |
48.89 |
0 |
48.89 |
0/1 |
| chr1 |
57219631 |
rs11404547 |
G |
GA |
. |
PASS |
0.9826000 |
0.7608000 |
0.9425000 |
0.6620000 |
0.7802000 |
0.8399000 |
37.0 |
70.0 |
12 |
70.89 |
33.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
57221552 |
rs71497596 |
TGA |
TTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.73 |
70.0 |
61 |
708.89 |
11.48 |
36.07 |
0 |
37.70 |
0/1 |
| chr1 |
57224460 |
rs857103 |
G |
C |
. |
PASS |
0.9818000 |
0.7406000 |
0.9345000 |
0.6252000 |
0.7771000 |
0.8273000 |
37.0 |
67.14 |
15 |
210.62 |
7.62 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
57246559 |
rs1738403 |
G |
A |
. |
PASS |
0.3797000 |
0.4928000 |
0.4365000 |
0.5298000 |
0.4049000 |
0.4419000 |
37.0 |
70.0 |
14 |
217.78 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
57246662 |
rs1774822 |
C |
T |
. |
PASS |
0.3828000 |
0.4928000 |
0.4365000 |
0.5308000 |
0.4080000 |
0.4435000 |
37.0 |
70.0 |
82 |
1000.00 |
2.77 |
53.66 |
0 |
53.66 |
0/1 |
| chr1 |
57257668 |
rs2298129 |
C |
A |
. |
PASS |
0.0575000 |
0.0677000 |
0.0893000 |
0.1382000 |
0.0818000 |
0.0863000 |
37.0 |
70.0 |
21 |
150.79 |
28.57 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
57257817 |
rs2298130 |
T |
C |
. |
PASS |
0.3601000 |
0.1599000 |
0.3542000 |
0.1431000 |
0.1748000 |
0.2514000 |
37.0 |
70.0 |
59 |
917.74 |
1.38 |
45.76 |
0 |
45.76 |
0/1 |
| chr1 |
57340727 |
rs652785 |
C |
A |
. |
PASS |
0.1755000 |
0.2507000 |
0.4960000 |
0.3439000 |
0.4796000 |
0.3437000 |
36.72 |
70.0 |
108 |
1000.00 |
7.02 |
39.81 |
0 |
39.81 |
0/1 |
| chr1 |
57340860 |
rs2269118 |
G |
A |
. |
PASS |
0.0847000 |
0.3184000 |
0.3452000 |
0.2018000 |
0.3354000 |
0.2420000 |
37.0 |
70.0 |
21 |
238.48 |
47.62 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
57349407 |
rs6694643 |
A |
T |
. |
PASS |
0.1241000 |
0.3127000 |
0.3393000 |
0.1481000 |
0.1892000 |
0.2111000 |
37.0 |
70.0 |
17 |
455.22 |
7.24 |
76.47 |
0 |
76.47 |
0/1 |
| chr1 |
57378413 |
rs623077 |
T |
C |
. |
PASS |
0.9244000 |
0.9035000 |
0.9296000 |
0.8618000 |
0.9724000 |
0.9193000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
57395251 |
rs605648 |
T |
C |
. |
PASS |
0.7837000 |
0.8905000 |
0.9306000 |
0.8608000 |
0.9724000 |
0.8804000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
57409329 |
rs72670361 |
A |
G |
. |
PASS |
0.0023000 |
0.0288000 |
0.0000000 |
0.0547000 |
0.0061000 |
0.0167730 |
36.5 |
70.0 |
32 |
861.69 |
0.00 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
57422484 |
rs1013579 |
C |
T |
. |
PASS |
0.9992000 |
0.9683000 |
1.0000000 |
0.9652000 |
0.9898000 |
0.9864000 |
36.51 |
70.0 |
97 |
1000.00 |
1.03 |
98.97 |
0 |
100.00 |
1/1 |
| chr1 |
57425888 |
rs139781264 |
AG |
A |
. |
PASS |
0.0393000 |
0.0793000 |
0.1270000 |
0.1680000 |
0.0736000 |
0.0950000 |
34.82 |
70.0 |
28 |
546.76 |
18.07 |
60.71 |
0 |
60.71 |
0/1 |
| chr1 |
58090551 |
rs4912271 |
T |
C |
. |
PASS |
0.4470000 |
0.4553000 |
0.6845000 |
0.5726000 |
0.4305000 |
0.5180000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
58294710 |
rs852778 |
C |
A |
. |
PASS |
0.6846000 |
0.6974000 |
0.5754000 |
0.5358000 |
0.4601000 |
0.5907000 |
36.52 |
70.0 |
33 |
896.30 |
2.91 |
75.76 |
0 |
75.76 |
0/1 |
| chr1 |
58294764 |
rs852779 |
A |
C |
. |
PASS |
0.6846000 |
0.6974000 |
0.5754000 |
0.5358000 |
0.4601000 |
0.5907000 |
35.84 |
70.0 |
73 |
1000.00 |
16.70 |
42.47 |
0 |
42.47 |
0/1 |
| chr1 |
58513951 |
rs35112903 |
C |
A |
. |
PASS |
0.2784000 |
0.3343000 |
0.1796000 |
0.2435000 |
0.1789000 |
0.2398000 |
37.0 |
70.0 |
45 |
370.95 |
3.42 |
28.89 |
0 |
28.89 |
0/1 |
| chr1 |
58514090 |
rs17131774 |
A |
G |
. |
PASS |
0.3956000 |
0.3501000 |
0.1815000 |
0.2455000 |
0.2413000 |
0.2859000 |
36.23 |
69.81 |
73 |
1000.00 |
1.98 |
64.38 |
0 |
64.38 |
0/1 |
| chr1 |
58540836 |
rs3121907 |
T |
C |
. |
PASS |
0.4312000 |
0.6326000 |
0.5069000 |
0.5934000 |
0.4949000 |
0.5194000 |
36.25 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
58946861 |
rs12144759 |
T |
G |
. |
PASS |
0.2307000 |
0.1110000 |
0.0486000 |
0.1819000 |
0.1472000 |
0.1514000 |
37.0 |
70.0 |
14 |
130.09 |
20.00 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
58971831 |
rs3087585 |
G |
A |
. |
PASS |
0.4546000 |
0.2075000 |
0.0526000 |
0.2922000 |
0.1871000 |
0.2546000 |
36.78 |
70.0 |
110 |
1000.00 |
9.09 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
58971940 |
rs11207245 |
C |
A |
. |
PASS |
0.4546000 |
0.2061000 |
0.0526000 |
0.2922000 |
0.1871000 |
0.2544000 |
36.33 |
70.0 |
24 |
631.00 |
2.78 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
58999712 |
rs34851388 |
G |
A |
. |
PASS |
0.0000000 |
0.0043000 |
0.0000000 |
0.0080000 |
0.0000000 |
0.0021965 |
36.17 |
70.0 |
53 |
995.33 |
4.68 |
54.72 |
0 |
54.72 |
0/1 |
| chr1 |
59004979 |
rs902925 |
C |
T |
. |
PASS |
0.9115000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9754000 |
36.76 |
69.6 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
59042181 |
rs14008 |
G |
T |
. |
PASS |
0.3449000 |
0.0533000 |
0.1379000 |
0.0497000 |
0.1074000 |
0.1571000 |
35.4 |
70.0 |
34 |
463.58 |
18.43 |
44.12 |
0 |
44.12 |
0/1 |
| chr1 |
59042388 |
rs1062964 |
C |
G |
. |
PASS |
0.0628000 |
0.0187000 |
0.0000000 |
0.0408000 |
0.0532000 |
0.0377000 |
35.86 |
70.0 |
44 |
684.10 |
19.70 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
59042882 |
rs232835 |
T |
G |
. |
PASS |
0.3449000 |
0.0533000 |
0.1379000 |
0.0497000 |
0.1063000 |
0.1569000 |
36.65 |
70.0 |
67 |
1000.00 |
2.02 |
50.75 |
0 |
50.75 |
0/1 |
| chr1 |
59096372 |
rs79758152 |
T |
C |
. |
PASS |
0.3502000 |
0.3718000 |
0.3988000 |
0.3897000 |
0.3732000 |
0.3754000 |
37.0 |
69.5 |
10 |
188.05 |
13.33 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
59096494 |
rs72676738 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.36 |
69.84 |
95 |
1000.00 |
7.37 |
58.95 |
0 |
58.95 |
0/1 |
| chr1 |
59096544 |
rs72922139 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
69.92 |
86 |
197.91 |
31.01 |
13.95 |
0 |
13.95 |
0/1 |
| chr1 |
59096580 |
. |
TTG |
TCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.92 |
66 |
279.15 |
27.27 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
59096598 |
rs72676742 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.92 |
64 |
276.14 |
17.71 |
18.75 |
0 |
18.75 |
0/1 |
| chr1 |
59096610 |
rs76970103 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.82 |
69.91 |
70 |
188.15 |
10.13 |
15.71 |
0 |
15.71 |
0/1 |
| chr1 |
59096630 |
rs75507867 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.88 |
80 |
60.90 |
12.50 |
10.00 |
0 |
10.00 |
0/1 |
| chr1 |
59096641 |
rs74371537 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.83 |
89 |
196.75 |
4.31 |
13.48 |
0 |
13.48 |
0/1 |
| chr1 |
59096652 |
rs78363929 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
69.92 |
97 |
202.45 |
3.65 |
13.40 |
0 |
13.40 |
0/1 |
| chr1 |
59096656 |
rs111864749 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.86 |
93 |
272.40 |
5.38 |
15.05 |
0 |
15.05 |
0/1 |
| chr1 |
59096669 |
rs75913621 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.92 |
103 |
697.62 |
12.97 |
24.27 |
0 |
24.27 |
0/1 |
| chr1 |
59096689 |
rs74079626 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
69.75 |
132 |
1000.00 |
4.47 |
60.61 |
0 |
60.61 |
0/1 |
| chr1 |
59096693 |
rs74079627 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.22 |
69.96 |
135 |
1000.00 |
5.09 |
34.07 |
0 |
34.07 |
0/1 |
| chr1 |
59096779 |
rs78917602 |
G |
GA |
. |
PASS |
0.4992000 |
0.5000000 |
0.5000000 |
0.5000000 |
0.5000000 |
0.4998000 |
36.76 |
69.88 |
192 |
1000.00 |
5.26 |
49.48 |
0 |
49.48 |
0/1 |
| chr1 |
59096853 |
rs78779878 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.89 |
68.8 |
133 |
1000.00 |
13.14 |
40.60 |
0 |
40.60 |
0/1 |
| chr1 |
59096927 |
rs111566536 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.56 |
77 |
107.55 |
80.52 |
11.69 |
0 |
11.69 |
0/1 |
| chr1 |
59097157 |
. |
A |
AGCCCGGAT |
. |
PASS |
0.1354000 |
0.0778000 |
0.0556000 |
0.0885000 |
0.0808000 |
0.0913000 |
36.78 |
67.67 |
47 |
623.87 |
6.60 |
42.55 |
0 |
42.55 |
0/1 |
| chr1 |
59097168 |
rs112794797 |
C |
T |
. |
PASS |
0.1460000 |
0.0793000 |
0.0556000 |
0.0905000 |
0.0828000 |
0.0950000 |
36.48 |
68.13 |
47 |
774.77 |
6.85 |
48.94 |
0 |
48.94 |
0/1 |
| chr1 |
59127024 |
rs4912364 |
T |
G |
. |
PASS |
0.2542000 |
0.4020000 |
0.4127000 |
0.3857000 |
0.2924000 |
0.3405000 |
36.35 |
70.0 |
58 |
1000.00 |
5.68 |
63.79 |
0 |
63.79 |
0/1 |
| chr1 |
59131311 |
rs232790 |
G |
T |
. |
PASS |
0.8495000 |
0.9092000 |
0.9365000 |
0.8718000 |
0.9284000 |
0.8952000 |
35.91 |
70.0 |
30 |
320.54 |
28.48 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
59134586 |
rs11207284 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.0 |
36 |
272.73 |
12.22 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
59134607 |
rs57822474 |
C |
CAG |
. |
PASS |
0.9955000 |
0.9813000 |
1.0000000 |
0.9612000 |
0.9928000 |
0.9870000 |
36.56 |
69.51 |
43 |
1000.00 |
2.99 |
97.67 |
0 |
100.00 |
1/1 |
| chr1 |
59139223 |
rs2064370 |
C |
G |
. |
PASS |
0.4841000 |
0.6383000 |
0.6280000 |
0.5865000 |
0.6227000 |
0.5821000 |
36.08 |
70.0 |
27 |
413.12 |
19.37 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
59142713 |
rs579110 |
T |
C |
. |
PASS |
0.7133000 |
0.6686000 |
0.6290000 |
0.5875000 |
0.6237000 |
0.6474000 |
36.37 |
70.0 |
40 |
628.76 |
0.79 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
59147420 |
rs11207292 |
G |
A |
. |
PASS |
0.4849000 |
0.6369000 |
0.6290000 |
0.5875000 |
0.6217000 |
0.5823000 |
37.0 |
70.0 |
22 |
193.71 |
2.60 |
31.82 |
0 |
31.82 |
0/1 |
| chr1 |
59147926 |
rs12139511 |
T |
C |
. |
PASS |
0.6589000 |
0.6643000 |
0.6290000 |
0.5875000 |
0.6217000 |
0.6320000 |
35.62 |
70.0 |
54 |
854.99 |
15.10 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
59150941 |
rs2206764 |
G |
A |
. |
PASS |
0.6831000 |
0.7450000 |
0.7897000 |
0.7217000 |
0.7239000 |
0.7288000 |
35.4 |
70.0 |
28 |
485.79 |
2.38 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
59158632 |
rs12097333 |
T |
C |
. |
PASS |
0.4849000 |
0.6369000 |
0.6280000 |
0.5865000 |
0.6217000 |
0.5819000 |
37.0 |
70.0 |
18 |
539.90 |
2.22 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
59160735 |
rs2473746 |
A |
G |
. |
PASS |
0.2186000 |
0.3256000 |
0.3720000 |
0.4095000 |
0.3783000 |
0.3339000 |
37.0 |
70.0 |
15 |
298.31 |
35.56 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
59160742 |
rs2064373 |
A |
C |
. |
PASS |
0.2216000 |
0.1153000 |
0.0645000 |
0.1531000 |
0.0736000 |
0.1326000 |
35.8 |
70.0 |
15 |
323.93 |
33.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
59160885 |
rs2064374 |
A |
G |
. |
PASS |
0.3411000 |
0.3357000 |
0.3720000 |
0.4125000 |
0.3783000 |
0.3682000 |
37.0 |
70.0 |
20 |
283.26 |
31.11 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
59165838 |
rs11207297 |
T |
G |
. |
PASS |
0.2557000 |
0.4438000 |
0.3938000 |
0.3897000 |
0.2444000 |
0.3343000 |
34.6 |
70.0 |
10 |
130.12 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
59347010 |
rs1998762 |
A |
G |
. |
PASS |
0.1997000 |
0.2176000 |
0.0685000 |
0.1491000 |
0.1892000 |
0.1635000 |
37.0 |
70.0 |
28 |
509.80 |
2.38 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
59347152 |
rs1998761 |
C |
T |
. |
PASS |
0.1150000 |
0.2147000 |
0.0665000 |
0.1471000 |
0.1748000 |
0.1372000 |
36.24 |
70.0 |
134 |
1000.00 |
0.47 |
47.01 |
0 |
47.01 |
0/1 |
| chr1 |
59630873 |
rs11295616 |
CT |
C |
. |
PASS |
0.4070000 |
0.6268000 |
0.6577000 |
0.5527000 |
0.5910000 |
0.5531000 |
36.28 |
70.0 |
18 |
693.81 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
59787350 |
rs835409 |
T |
G |
. |
PASS |
0.5477000 |
0.4078000 |
0.4782000 |
0.3509000 |
0.5092000 |
0.4673000 |
36.58 |
69.76 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
59792497 |
rs835373 |
A |
C |
. |
PASS |
0.6120000 |
0.4135000 |
0.4663000 |
0.3569000 |
0.5102000 |
0.4840000 |
36.65 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
59844471 |
rs835435 |
G |
A |
. |
PASS |
0.6785000 |
0.4078000 |
0.4266000 |
0.3996000 |
0.4683000 |
0.4932000 |
36.47 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
59951705 |
rs1188236 |
T |
G |
. |
PASS |
0.6672000 |
0.5360000 |
0.3700000 |
0.4841000 |
0.4438000 |
0.5088000 |
36.36 |
69.64 |
96 |
1000.00 |
5.95 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
60228310 |
rs10626387 |
T |
TTC |
. |
PASS |
0.7300000 |
0.8934000 |
0.9970000 |
0.8310000 |
0.8763000 |
0.8552000 |
36.54 |
70.0 |
30 |
427.41 |
1.90 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
60232151 |
rs629957 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9960000 |
1.0000000 |
0.9992000 |
36.49 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
60280749 |
rs113730234 |
GT |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
60280962 |
rs41287714 |
A |
G |
. |
PASS |
0.4887000 |
0.3170000 |
0.1627000 |
0.3469000 |
0.1769000 |
0.3099000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
60466911 |
rs34585993,rs67112814,rs71582610 |
ACAG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.62 |
70.0 |
21 |
740.31 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
60503762 |
rs17560663 |
T |
C |
. |
PASS |
0.0113000 |
0.1282000 |
0.0218000 |
0.1859000 |
0.0930000 |
0.0807000 |
37.0 |
70.0 |
50 |
903.06 |
3.08 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
60505578 |
rs680390 |
A |
G |
. |
PASS |
0.9198000 |
0.8012000 |
0.7004000 |
0.9006000 |
0.9029000 |
0.8520000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
60646192 |
rs7535371 |
C |
A |
. |
PASS |
0.6309000 |
0.6470000 |
0.5446000 |
0.6720000 |
0.4499000 |
0.5887000 |
37.0 |
70.0 |
32 |
159.45 |
8.04 |
21.88 |
0 |
21.88 |
0/1 |
| chr1 |
60942449 |
rs34602975 |
C |
G |
. |
PASS |
0.0151000 |
0.2032000 |
0.1776000 |
0.2197000 |
0.1759000 |
0.1464000 |
36.25 |
70.0 |
27 |
538.43 |
3.70 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
60942486 |
rs4244166 |
G |
A |
. |
PASS |
0.9070000 |
0.9870000 |
1.0000000 |
0.9821000 |
0.9642000 |
0.9631000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
61359395 |
rs10493299 |
G |
A |
. |
PASS |
0.3593000 |
0.5937000 |
0.6845000 |
0.4334000 |
0.5204000 |
0.5036000 |
36.04 |
70.0 |
56 |
819.21 |
5.86 |
44.64 |
0 |
44.64 |
0/1 |
| chr1 |
61680057 |
rs333149 |
T |
C |
. |
PASS |
0.5635000 |
0.3026000 |
0.5208000 |
0.3201000 |
0.3027000 |
0.4189000 |
35.46 |
70.0 |
95 |
1000.00 |
8.74 |
41.05 |
0 |
41.05 |
0/1 |
| chr1 |
61743337 |
rs11207719 |
G |
T |
. |
PASS |
0.2617000 |
0.0893000 |
0.2044000 |
0.0746000 |
0.1125000 |
0.1595000 |
37.0 |
70.0 |
29 |
377.34 |
2.30 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
61892301 |
rs5774558 |
T |
TG |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9998000 |
36.48 |
70.0 |
21 |
814.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62119978 |
rs10789097 |
C |
G |
. |
PASS |
0.7080000 |
0.8818000 |
0.9415000 |
0.8678000 |
0.9591000 |
0.8602000 |
37.0 |
70.0 |
56 |
1000.00 |
0.00 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
62149237 |
rs12134205 |
C |
G |
. |
PASS |
0.0212000 |
0.1153000 |
0.0218000 |
0.2256000 |
0.1840000 |
0.1072000 |
35.5 |
70.0 |
20 |
225.33 |
15.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
62160525 |
rs149200386,rs10680868 |
T |
TTA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
154.42 |
23.81 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
62160542 |
rs1151765 |
A |
G |
. |
PASS |
0.9539000 |
0.9236000 |
0.8472000 |
0.9334000 |
0.9755000 |
0.9283000 |
37.0 |
70.0 |
12 |
140.26 |
10.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
62231924 |
rs141761262 |
T |
TTGA |
. |
PASS |
0.5371000 |
0.6527000 |
0.8710000 |
0.6451000 |
0.7474000 |
0.6831000 |
36.75 |
70.0 |
16 |
608.25 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62232031 |
rs1286835 |
C |
T |
. |
PASS |
0.6989000 |
0.9654000 |
1.0000000 |
0.9791000 |
0.9928000 |
0.9101000 |
36.66 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62232130 |
rs11207827 |
T |
C |
. |
PASS |
0.3094000 |
0.1744000 |
0.3690000 |
0.2346000 |
0.1493000 |
0.2564000 |
36.39 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62261168 |
rs7516332 |
A |
G |
. |
PASS |
0.1808000 |
0.5634000 |
0.4514000 |
0.4930000 |
0.6104000 |
0.4349000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62275898 |
rs61770137 |
T |
C |
. |
PASS |
0.4909000 |
0.6138000 |
0.4762000 |
0.4950000 |
0.6268000 |
0.5323000 |
36.83 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62329885 |
rs35853578 |
AT |
A |
. |
PASS |
0.5242000 |
0.3213000 |
0.1726000 |
0.3738000 |
0.5266000 |
0.3956000 |
36.49 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62330080 |
rs2799627 |
T |
G |
. |
PASS |
0.9660000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9908000 |
36.8 |
69.34 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62330374 |
rs17371993 |
A |
T |
. |
PASS |
0.0560000 |
0.0821000 |
0.0685000 |
0.1402000 |
0.2812000 |
0.1230000 |
37.0 |
70.0 |
10 |
225.67 |
17.14 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
62365217 |
rs1412622 |
C |
T |
. |
PASS |
0.4713000 |
0.6499000 |
0.4147000 |
0.6869000 |
0.6268000 |
0.5583000 |
35.86 |
70.0 |
21 |
817.67 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62366878 |
rs2499002 |
T |
G |
. |
PASS |
0.7012000 |
0.7277000 |
0.9990000 |
0.7555000 |
0.8507000 |
0.8049000 |
37.0 |
70.0 |
14 |
545.15 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62380270 |
rs1134766 |
C |
T |
. |
PASS |
0.8880000 |
0.8357000 |
0.7431000 |
0.7247000 |
0.6738000 |
0.7770000 |
37.0 |
70.0 |
47 |
1000.00 |
0.40 |
68.09 |
0 |
68.09 |
0/1 |
| chr1 |
62380298 |
rs1056513 |
G |
A |
. |
PASS |
0.0862000 |
0.5231000 |
0.5655000 |
0.6282000 |
0.5624000 |
0.4451000 |
36.71 |
70.0 |
66 |
1000.00 |
2.16 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
62393394 |
rs2251182 |
A |
G |
. |
PASS |
0.8707000 |
0.9193000 |
0.8125000 |
0.8499000 |
0.7945000 |
0.8466000 |
36.43 |
70.0 |
55 |
667.16 |
7.97 |
38.18 |
0 |
38.18 |
0/1 |
| chr1 |
62456014 |
rs1134767 |
G |
A |
. |
PASS |
0.5530000 |
0.3199000 |
0.4683000 |
0.4066000 |
0.5562000 |
0.4748000 |
37.0 |
70.0 |
62 |
532.79 |
0.36 |
29.03 |
0 |
29.03 |
0/1 |
| chr1 |
62456048 |
rs12730210 |
G |
A |
. |
PASS |
0.3828000 |
0.2176000 |
0.4454000 |
0.2346000 |
0.4070000 |
0.3474000 |
37.0 |
70.0 |
55 |
428.54 |
6.06 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
62516683 |
rs2498982 |
G |
C |
. |
PASS |
0.7670000 |
0.5591000 |
0.2778000 |
0.5467000 |
0.6411000 |
0.5709000 |
35.63 |
70.0 |
57 |
1000.00 |
0.20 |
61.40 |
0 |
61.40 |
0/1 |
| chr1 |
62545085 |
rs17379217 |
C |
T |
. |
PASS |
0.0734000 |
0.2277000 |
0.1200000 |
0.3926000 |
0.2219000 |
0.1973000 |
37.0 |
70.0 |
17 |
334.06 |
1.18 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
62579672 |
rs1475564 |
A |
C |
. |
PASS |
0.8056000 |
0.7853000 |
0.8958000 |
0.6889000 |
0.8354000 |
0.8033000 |
36.54 |
70.0 |
49 |
889.91 |
2.51 |
53.06 |
0 |
53.06 |
0/1 |
| chr1 |
62579823 |
rs1475563 |
G |
A |
. |
PASS |
0.4206000 |
0.7161000 |
0.7540000 |
0.6600000 |
0.5859000 |
0.6090000 |
35.97 |
69.43 |
67 |
1000.00 |
6.31 |
52.24 |
0 |
52.24 |
0/1 |
| chr1 |
62594593 |
rs2476194 |
C |
T |
. |
PASS |
0.1362000 |
0.4741000 |
0.0754000 |
0.5358000 |
0.5450000 |
0.3309000 |
35.88 |
70.0 |
80 |
1000.00 |
1.25 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
62594677 |
rs2481665 |
T |
C |
. |
PASS |
0.0772000 |
0.2363000 |
0.0169000 |
0.4284000 |
0.2249000 |
0.1865000 |
37.0 |
70.0 |
22 |
319.01 |
7.27 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
62634700 |
rs2989012 |
A |
C |
. |
PASS |
0.2534000 |
0.2205000 |
0.1875000 |
0.3211000 |
0.2239000 |
0.2434000 |
37.0 |
70.0 |
36 |
648.66 |
3.22 |
52.78 |
0 |
52.78 |
0/1 |
| chr1 |
62634797 |
rs927531 |
C |
G |
. |
PASS |
0.5257000 |
0.4971000 |
0.3790000 |
0.4761000 |
0.5971000 |
0.4962000 |
36.64 |
70.0 |
134 |
1000.00 |
1.49 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
62672546 |
rs2457829 |
G |
A |
. |
PASS |
0.9879000 |
0.9352000 |
0.8522000 |
0.8410000 |
0.7679000 |
0.8808000 |
36.6 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62673037 |
rs7542665 |
T |
C |
. |
PASS |
0.6747000 |
0.6470000 |
0.3234000 |
0.6750000 |
0.5521000 |
0.5763000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62673225 |
rs7533274 |
G |
A |
. |
PASS |
0.5961000 |
0.6239000 |
0.3194000 |
0.6491000 |
0.5082000 |
0.5377000 |
36.44 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62673287 |
rs2457828 |
A |
C |
. |
PASS |
0.0567000 |
0.1297000 |
0.0010000 |
0.1700000 |
0.0419000 |
0.0755000 |
35.91 |
70.0 |
39 |
740.92 |
7.69 |
56.41 |
0 |
56.41 |
0/1 |
| chr1 |
62673365 |
rs17379608 |
T |
C |
. |
PASS |
0.0613000 |
0.1758000 |
0.0000000 |
0.0795000 |
0.0419000 |
0.0647000 |
37.0 |
70.0 |
22 |
277.25 |
19.19 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
62675619 |
rs4625314 |
C |
T |
. |
PASS |
0.2769000 |
0.3473000 |
0.1091000 |
0.4920000 |
0.2894000 |
0.2985000 |
36.52 |
70.0 |
49 |
852.29 |
13.88 |
51.02 |
0 |
51.02 |
0/1 |
| chr1 |
62675892 |
rs2481694 |
A |
G |
. |
PASS |
0.5166000 |
0.6254000 |
0.2510000 |
0.6481000 |
0.5317000 |
0.5076000 |
36.62 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62676612 |
rs66958136 |
A |
G |
. |
PASS |
0.0825000 |
0.3199000 |
0.0704000 |
0.2922000 |
0.0982000 |
0.1581000 |
36.41 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62677048 |
rs1056517 |
G |
T |
. |
PASS |
0.2738000 |
0.4986000 |
0.1071000 |
0.5477000 |
0.2832000 |
0.3283000 |
36.48 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62677050 |
rs12137401 |
C |
T |
. |
PASS |
0.0794000 |
0.3040000 |
0.0694000 |
0.2515000 |
0.0798000 |
0.1432000 |
37.0 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62677118 |
rs12130050 |
A |
G |
. |
PASS |
0.0817000 |
0.3199000 |
0.0694000 |
0.2913000 |
0.0982000 |
0.1575000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62704134 |
rs41289438 |
A |
G |
. |
PASS |
0.3343000 |
0.3228000 |
0.1429000 |
0.3748000 |
0.2362000 |
0.2831000 |
37.0 |
70.0 |
11 |
185.04 |
3.03 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
62713224 |
rs2941679 |
C |
G |
. |
PASS |
0.9962000 |
0.9914000 |
1.0000000 |
0.9672000 |
0.9744000 |
0.9862000 |
36.52 |
70.0 |
101 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62713246 |
rs10889315 |
G |
A |
. |
PASS |
0.3026000 |
0.3444000 |
0.1429000 |
0.4195000 |
0.4008000 |
0.3189000 |
36.09 |
70.0 |
129 |
1000.00 |
1.90 |
51.16 |
0 |
51.16 |
0/1 |
| chr1 |
62713469 |
rs10789108 |
T |
C |
. |
PASS |
0.4198000 |
0.3905000 |
0.1419000 |
0.4493000 |
0.4356000 |
0.3688000 |
37.0 |
70.0 |
19 |
202.73 |
31.58 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
62728784 |
rs2666472 |
A |
G |
. |
PASS |
0.5484000 |
0.7882000 |
0.8433000 |
0.7396000 |
0.7352000 |
0.7159000 |
36.56 |
69.63 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62728838 |
rs2258470 |
T |
C |
. |
PASS |
0.5484000 |
0.7896000 |
0.8442000 |
0.7396000 |
0.7352000 |
0.7163000 |
36.65 |
69.71 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62728861 |
rs2260581 |
T |
C |
. |
PASS |
0.5492000 |
0.7896000 |
0.8433000 |
0.7396000 |
0.7352000 |
0.7163000 |
37.0 |
69.66 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62728918 |
rs2262110 |
G |
A |
. |
PASS |
0.5484000 |
0.7896000 |
0.8433000 |
0.7396000 |
0.7352000 |
0.7161000 |
36.01 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62729015 |
rs2262106 |
G |
A |
. |
PASS |
0.5242000 |
0.7882000 |
0.8433000 |
0.7396000 |
0.7352000 |
0.7095000 |
35.67 |
70.0 |
18 |
692.36 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62732421 |
rs11207949 |
T |
C |
. |
PASS |
0.2095000 |
0.3977000 |
0.5873000 |
0.2654000 |
0.1207000 |
0.3055000 |
37.0 |
70.0 |
44 |
628.73 |
6.70 |
43.18 |
0 |
43.18 |
0/1 |
| chr1 |
62733939 |
rs11207950 |
G |
A |
. |
PASS |
0.5885000 |
0.3890000 |
0.2520000 |
0.4105000 |
0.6370000 |
0.4669000 |
37.0 |
70.0 |
41 |
512.45 |
4.57 |
39.02 |
0 |
39.02 |
0/1 |
| chr1 |
62737372 |
rs4609464 |
A |
C |
. |
PASS |
0.4168000 |
0.3458000 |
0.2510000 |
0.3847000 |
0.5562000 |
0.3944000 |
37.0 |
70.0 |
10 |
225.67 |
20.00 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
62738904 |
rs7516290 |
T |
C |
. |
PASS |
0.8782000 |
0.7911000 |
0.8403000 |
0.7018000 |
0.7628000 |
0.8005000 |
36.62 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62739198 |
rs17855078 |
G |
A |
. |
PASS |
0.1641000 |
0.2291000 |
0.1121000 |
0.3410000 |
0.4325000 |
0.2506000 |
36.09 |
69.7 |
120 |
1000.00 |
1.97 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
62740065 |
rs12127930 |
A |
G |
. |
PASS |
0.6437000 |
0.3948000 |
0.2480000 |
0.4394000 |
0.6115000 |
0.4822000 |
36.74 |
70.0 |
104 |
1000.00 |
4.46 |
45.19 |
0 |
45.19 |
0/1 |
| chr1 |
62740446 |
rs2666506 |
T |
C |
. |
PASS |
0.8812000 |
0.7911000 |
0.8522000 |
0.7038000 |
0.7648000 |
0.8045000 |
36.85 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62740449 |
rs2666507 |
T |
C |
. |
PASS |
0.7980000 |
0.7795000 |
0.8522000 |
0.7038000 |
0.7648000 |
0.7810000 |
36.7 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62892228 |
rs584998 |
A |
G |
. |
PASS |
0.5953000 |
0.5317000 |
0.4405000 |
0.5149000 |
0.6493000 |
0.5497000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62939634 |
rs1168007 |
C |
T |
. |
PASS |
0.8669000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9631000 |
36.79 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62943264 |
rs1168008 |
C |
T |
. |
PASS |
0.9349000 |
0.9928000 |
0.9683000 |
1.0000000 |
1.0000000 |
0.9754000 |
36.4 |
69.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
62961928 |
rs1168038 |
T |
C |
. |
PASS |
0.9289000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9804000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
63001120 |
rs1168018 |
A |
C |
. |
PASS |
0.3487000 |
0.6124000 |
0.7679000 |
0.6958000 |
0.5317000 |
0.5751000 |
36.0 |
70.0 |
24 |
938.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
63027411 |
rs5774610 |
AG |
A |
. |
PASS |
0.9009000 |
0.9899000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9722000 |
36.03 |
69.39 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
63052344 |
rs34963039,rs56200511 |
CTA |
C |
. |
PASS |
0.0522000 |
0.2291000 |
0.1538000 |
0.2704000 |
0.2055000 |
0.1709000 |
36.77 |
70.0 |
26 |
951.44 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
63113511 |
rs746735 |
C |
A |
. |
PASS |
0.3472000 |
0.6124000 |
0.7669000 |
0.6948000 |
0.5337000 |
0.5747000 |
37.0 |
70.0 |
14 |
545.15 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
63113689 |
rs1168088 |
T |
C |
. |
PASS |
0.9380000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9828000 |
34.6 |
70.0 |
10 |
358.20 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
63113719 |
rs1168089 |
T |
C |
. |
PASS |
0.3359000 |
0.6124000 |
0.7679000 |
0.6948000 |
0.5337000 |
0.5719000 |
35.67 |
70.0 |
18 |
692.36 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
63153866 |
rs183409343 |
C |
G |
. |
PASS |
0.0061000 |
0.1124000 |
0.0050000 |
0.0934000 |
0.0419000 |
0.0451000 |
37.0 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
63306232 |
rs6695607 |
T |
G |
. |
PASS |
0.4637000 |
0.4986000 |
0.6677000 |
0.4443000 |
0.3937000 |
0.4920000 |
37.0 |
70.0 |
36 |
648.66 |
15.79 |
52.78 |
0 |
52.78 |
0/1 |
| chr1 |
63605601 |
rs11585289 |
T |
C |
. |
PASS |
0.5469000 |
0.5231000 |
0.5516000 |
0.5298000 |
0.5358000 |
0.5389000 |
37.0 |
70.0 |
81 |
1000.00 |
6.28 |
56.79 |
0 |
56.79 |
0/1 |
| chr1 |
63789088 |
rs202186939 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
70.0 |
59 |
1000.00 |
1.69 |
57.63 |
0 |
57.63 |
0/1 |
| chr1 |
63920515 |
rs17319708 |
C |
G |
. |
PASS |
0.0061000 |
0.1859000 |
0.0268000 |
0.2266000 |
0.0460000 |
0.0873000 |
37.0 |
70.0 |
12 |
303.19 |
5.56 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
64020987 |
rs72679089 |
A |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.08 |
70.0 |
18 |
440.21 |
3.42 |
72.22 |
0 |
72.22 |
0/1 |
| chr1 |
64059461 |
. |
G |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0010000 |
0.0020000 |
0.0000000 |
0.0005990 |
35.59 |
70.0 |
33 |
550.13 |
7.84 |
51.52 |
0 |
51.52 |
0/1 |
| chr1 |
64240240 |
rs606550 |
C |
T |
. |
PASS |
0.6861000 |
0.1931000 |
0.1875000 |
0.2167000 |
0.3548000 |
0.3584000 |
33.57 |
70.0 |
24 |
432.04 |
5.95 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
64254526 |
rs632076 |
G |
A |
. |
PASS |
0.5439000 |
0.1801000 |
0.1875000 |
0.2137000 |
0.3446000 |
0.3165000 |
37.0 |
70.0 |
15 |
173.00 |
6.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
64309265 |
rs602934 |
A |
C |
. |
PASS |
0.8487000 |
0.3170000 |
0.1419000 |
0.3330000 |
0.4325000 |
0.4479000 |
37.0 |
70.0 |
11 |
139.12 |
29.09 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
64309302 |
rs583102 |
A |
C |
. |
PASS |
0.8487000 |
0.3170000 |
0.1419000 |
0.3330000 |
0.4325000 |
0.4479000 |
37.0 |
70.0 |
12 |
177.89 |
33.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
64515379 |
rs1772626 |
C |
T |
. |
PASS |
0.5545000 |
0.8602000 |
0.9415000 |
0.8310000 |
0.8027000 |
0.7788000 |
36.68 |
70.0 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
64603231 |
rs3738151 |
G |
A |
. |
PASS |
0.1089000 |
0.1254000 |
0.0427000 |
0.1710000 |
0.1155000 |
0.1116000 |
37.0 |
70.0 |
13 |
220.80 |
2.20 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
64608329 |
rs2762833 |
G |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
64616391 |
rs2762834 |
G |
A |
. |
PASS |
0.3699000 |
0.4467000 |
0.4812000 |
0.3847000 |
0.3640000 |
0.4048000 |
35.0 |
66.67 |
23 |
136.91 |
20.29 |
26.09 |
0 |
26.09 |
0/1 |
| chr1 |
64616429 |
rs1324359 |
A |
G |
. |
PASS |
0.1377000 |
0.4409000 |
0.5119000 |
0.4245000 |
0.3845000 |
0.3608000 |
37.0 |
70.0 |
16 |
253.53 |
12.50 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
64624612 |
rs4362024 |
G |
A |
. |
PASS |
0.8533000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9607000 |
37.0 |
68.18 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
64624842 |
rs6668545 |
A |
G |
. |
PASS |
0.2171000 |
0.3588000 |
0.4127000 |
0.3966000 |
0.3896000 |
0.3458000 |
37.0 |
70.0 |
59 |
1000.00 |
9.00 |
54.24 |
0 |
54.24 |
0/1 |
| chr1 |
64643277 |
rs7527017 |
C |
T |
. |
PASS |
0.0416000 |
0.2968000 |
0.3115000 |
0.3549000 |
0.2924000 |
0.2432000 |
36.45 |
70.0 |
45 |
739.02 |
2.42 |
48.89 |
0 |
48.89 |
0/1 |
| chr1 |
65016349 |
rs2164571 |
A |
T |
. |
PASS |
0.7814000 |
0.9409000 |
1.0000000 |
0.9324000 |
0.9755000 |
0.9157000 |
36.78 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
65068638 |
rs6665437 |
T |
C |
. |
PASS |
0.9561000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9878000 |
36.5 |
70.0 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
65098309 |
rs61731122 |
G |
A |
. |
PASS |
0.0008000 |
0.0072000 |
0.0000000 |
0.0368000 |
0.0020000 |
0.0089856 |
36.54 |
70.0 |
60 |
860.95 |
16.41 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
65099978 |
rs2118102 |
G |
A |
. |
PASS |
0.7179000 |
0.9755000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9215000 |
35.8 |
70.0 |
20 |
775.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
65113568 |
rs6588100 |
T |
C |
. |
PASS |
0.9917000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9978000 |
36.54 |
70.0 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
65141557 |
rs72673386 |
G |
A |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0007987 |
36.57 |
70.0 |
48 |
980.62 |
7.14 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
65141676 |
. |
TTAA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.12 |
70.0 |
51 |
1000.00 |
2.04 |
98.04 |
0 |
98.04 |
1/1 |
| chr1 |
65157120 |
rs72673394 |
C |
G |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0003994 |
36.61 |
70.0 |
57 |
1000.00 |
4.98 |
54.39 |
0 |
54.39 |
0/1 |
| chr1 |
65255018 |
rs2500232 |
G |
A |
. |
PASS |
0.8313000 |
0.4841000 |
0.5942000 |
0.3429000 |
0.3067000 |
0.5349000 |
37.0 |
70.0 |
14 |
134.24 |
5.71 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
65270549 |
rs12134044 |
A |
G |
. |
PASS |
0.0348000 |
0.1902000 |
0.0069000 |
0.1441000 |
0.0634000 |
0.0783000 |
35.67 |
70.0 |
25 |
620.13 |
12.00 |
72.00 |
0 |
72.00 |
0/1 |
| chr1 |
65280620 |
rs3790529 |
G |
A |
. |
PASS |
0.1278000 |
0.1599000 |
0.2788000 |
0.1004000 |
0.1176000 |
0.1552000 |
37.0 |
70.0 |
17 |
292.29 |
7.84 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
65311214 |
rs3737139 |
G |
C |
. |
PASS |
0.0015000 |
0.1311000 |
0.0069000 |
0.0408000 |
0.0542000 |
0.0387000 |
36.33 |
70.0 |
77 |
1000.00 |
7.22 |
46.75 |
0 |
46.75 |
0/1 |
| chr1 |
65321250 |
rs2230586 |
G |
A |
. |
PASS |
0.0015000 |
0.1311000 |
0.0069000 |
0.0408000 |
0.0542000 |
0.0387000 |
36.5 |
70.0 |
98 |
1000.00 |
0.00 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
65321388 |
rs310229 |
G |
A |
. |
PASS |
0.6309000 |
0.4467000 |
0.3065000 |
0.2932000 |
0.2740000 |
0.4026000 |
36.29 |
70.0 |
56 |
497.06 |
4.41 |
30.36 |
0 |
30.36 |
0/1 |
| chr1 |
65321419 |
rs11579283 |
G |
A |
. |
PASS |
0.0015000 |
0.1311000 |
0.0069000 |
0.0408000 |
0.0542000 |
0.0387000 |
36.0 |
70.0 |
35 |
351.42 |
18.57 |
34.29 |
0 |
34.29 |
0/1 |
| chr1 |
65325970 |
rs310224 |
C |
T |
. |
PASS |
0.6369000 |
0.4452000 |
0.3065000 |
0.2932000 |
0.2751000 |
0.4042000 |
36.08 |
70.0 |
43 |
900.11 |
2.68 |
60.47 |
0 |
60.47 |
0/1 |
| chr1 |
65335095 |
rs11585932 |
T |
C |
. |
PASS |
0.0015000 |
0.1297000 |
0.0069000 |
0.0408000 |
0.0368000 |
0.0351000 |
36.14 |
70.0 |
64 |
920.44 |
2.68 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
65684548 |
rs199711184 |
G |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
69.67 |
39 |
723.17 |
6.59 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
65886398 |
rs3790435 |
T |
C |
. |
PASS |
0.4811000 |
0.4697000 |
0.8681000 |
0.4453000 |
0.5716000 |
0.5679000 |
36.75 |
70.0 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
65886448 |
rs3790434 |
T |
C |
. |
PASS |
0.3888000 |
0.4625000 |
0.8681000 |
0.4453000 |
0.5716000 |
0.5425000 |
36.74 |
70.0 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
65887013 |
rs12145690 |
A |
C |
. |
PASS |
0.3873000 |
0.4611000 |
0.8681000 |
0.4443000 |
0.5726000 |
0.5419000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
66036501 |
rs2186248 |
G |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.4 |
70.0 |
15 |
562.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
66058513 |
rs1137101 |
A |
G |
. |
PASS |
0.5923000 |
0.4366000 |
0.8690000 |
0.4692000 |
0.5031000 |
0.5843000 |
37.0 |
70.0 |
57 |
798.45 |
7.46 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
66067109 |
rs1805134 |
T |
C |
. |
PASS |
0.3820000 |
0.1455000 |
0.0675000 |
0.2227000 |
0.3824000 |
0.2540000 |
34.88 |
70.0 |
38 |
527.22 |
2.17 |
44.74 |
0 |
44.74 |
0/1 |
| chr1 |
66619578 |
rs2503166 |
G |
A |
. |
PASS |
0.6929000 |
0.6787000 |
0.4206000 |
0.6849000 |
0.4990000 |
0.5966000 |
36.68 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
66731886 |
rs6588193 |
G |
C |
. |
PASS |
0.1407000 |
0.2752000 |
0.1637000 |
0.5437000 |
0.2904000 |
0.2742000 |
37.0 |
70.0 |
10 |
100.36 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
66829262 |
rs783039 |
A |
G |
. |
PASS |
0.9349000 |
0.7839000 |
0.9454000 |
0.7416000 |
0.8926000 |
0.8690000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
66831370 |
rs783036 |
G |
A |
. |
PASS |
0.7927000 |
0.4467000 |
0.1458000 |
0.4920000 |
0.5920000 |
0.5150000 |
36.79 |
69.64 |
103 |
1000.00 |
3.29 |
54.37 |
0 |
54.37 |
0/1 |
| chr1 |
66945275 |
rs783436 |
C |
G |
. |
PASS |
0.3608000 |
0.6110000 |
0.6687000 |
0.6382000 |
0.4939000 |
0.5391000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
66945358 |
rs814146 |
C |
T |
. |
PASS |
0.3608000 |
0.6110000 |
0.6687000 |
0.6382000 |
0.4939000 |
0.5391000 |
36.76 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
66945463 |
rs4655490 |
T |
G |
. |
PASS |
0.2511000 |
0.3991000 |
0.2480000 |
0.5030000 |
0.3783000 |
0.3464000 |
37.0 |
70.0 |
10 |
183.90 |
13.33 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
67098664 |
rs7531750 |
G |
A |
. |
PASS |
0.0772000 |
0.0865000 |
0.1250000 |
0.1501000 |
0.1483000 |
0.1166000 |
37.0 |
70.0 |
18 |
289.28 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
67101802 |
rs7546825 |
A |
G |
. |
PASS |
0.8026000 |
0.5663000 |
0.5030000 |
0.4394000 |
0.4816000 |
0.5739000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67109410 |
rs145373755 |
T |
TTGTG |
. |
PASS |
0.1490000 |
0.0937000 |
0.1250000 |
0.1491000 |
0.1411000 |
0.1350000 |
35.5 |
70.0 |
38 |
207.49 |
25.73 |
23.68 |
0 |
23.68 |
0/1 |
| chr1 |
67126114 |
rs12094526 |
A |
G |
. |
PASS |
0.5870000 |
0.6556000 |
0.8740000 |
0.4105000 |
0.7618000 |
0.6530000 |
37.0 |
70.0 |
23 |
357.78 |
3.16 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
67136610 |
rs7540244 |
G |
T |
. |
PASS |
0.1059000 |
0.0850000 |
0.1260000 |
0.1461000 |
0.1462000 |
0.1230000 |
37.0 |
70.0 |
20 |
237.35 |
5.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
67142675 |
rs11208943 |
T |
C |
. |
PASS |
0.0877000 |
0.1801000 |
0.0893000 |
0.1670000 |
0.1125000 |
0.1216000 |
36.0 |
70.0 |
42 |
819.58 |
4.76 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
67145322 |
rs10889644 |
C |
A |
. |
PASS |
0.6831000 |
0.7435000 |
1.0000000 |
0.5606000 |
0.9059000 |
0.7742000 |
36.43 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67147696 |
rs72669494 |
C |
T |
. |
PASS |
0.0008000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0010000 |
0.0005990 |
36.65 |
70.0 |
70 |
1000.00 |
14.79 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
67155862 |
rs71660869,rs10608231 |
TCTC |
T |
. |
PASS |
0.1778000 |
0.2550000 |
0.2202000 |
0.3181000 |
0.3303000 |
0.2550000 |
36.18 |
70.0 |
22 |
814.12 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67160336 |
rs2146904 |
A |
G |
. |
PASS |
0.6286000 |
0.7334000 |
0.9960000 |
0.5646000 |
0.8160000 |
0.7408000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67194911 |
rs3078564 |
TTC |
T |
. |
PASS |
0.2436000 |
0.2651000 |
0.2302000 |
0.3370000 |
0.3364000 |
0.2808000 |
35.96 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67236097 |
rs1060575 |
A |
T |
. |
PASS |
0.0862000 |
0.1023000 |
0.1488000 |
0.1511000 |
0.1810000 |
0.1326000 |
37.0 |
70.0 |
43 |
878.21 |
1.67 |
58.14 |
0 |
58.14 |
0/1 |
| chr1 |
67242087 |
rs3816989 |
G |
A |
. |
PASS |
0.0794000 |
0.1009000 |
0.1488000 |
0.1511000 |
0.1810000 |
0.1306000 |
35.84 |
70.0 |
68 |
1000.00 |
2.09 |
45.59 |
0 |
45.59 |
0/1 |
| chr1 |
67243024 |
rs2133173 |
C |
A |
. |
PASS |
0.2050000 |
0.2219000 |
0.1012000 |
0.2932000 |
0.1718000 |
0.1977000 |
36.29 |
70.0 |
90 |
1000.00 |
3.66 |
56.67 |
0 |
56.67 |
0/1 |
| chr1 |
67266756 |
rs549148 |
T |
A |
. |
PASS |
0.7821000 |
0.8919000 |
0.9901000 |
0.8300000 |
0.8967000 |
0.8712000 |
36.8 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67288045 |
rs482082 |
C |
T |
. |
PASS |
0.5537000 |
0.5447000 |
0.6419000 |
0.4761000 |
0.3497000 |
0.5148000 |
36.29 |
70.0 |
67 |
1000.00 |
4.57 |
50.75 |
0 |
50.75 |
0/1 |
| chr1 |
67292473 |
rs34718535 |
A |
AT |
. |
PASS |
0.3752000 |
0.4524000 |
0.3700000 |
0.5229000 |
0.6524000 |
0.4687000 |
36.29 |
70.0 |
78 |
1000.00 |
4.62 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
67292478 |
rs36067642 |
T |
A |
. |
PASS |
0.3752000 |
0.4524000 |
0.3700000 |
0.5239000 |
0.6534000 |
0.4690000 |
35.47 |
70.0 |
83 |
1000.00 |
5.33 |
56.63 |
0 |
56.63 |
0/1 |
| chr1 |
67303303 |
rs6698076 |
A |
G |
. |
PASS |
0.4834000 |
0.3818000 |
0.6587000 |
0.3270000 |
0.6145000 |
0.4988000 |
36.14 |
70.0 |
25 |
465.06 |
5.71 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
67306054 |
rs11208966 |
C |
A |
. |
PASS |
0.2292000 |
0.2565000 |
0.5466000 |
0.1740000 |
0.3855000 |
0.3163000 |
37.0 |
70.0 |
17 |
371.69 |
0.00 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
67390416 |
rs3008858 |
G |
C |
. |
PASS |
0.8449000 |
0.8343000 |
0.8829000 |
0.7326000 |
0.8926000 |
0.8379000 |
36.61 |
70.0 |
130 |
1000.00 |
0.00 |
47.69 |
0 |
47.69 |
0/1 |
| chr1 |
67390468 |
rs1886686 |
C |
G |
. |
PASS |
0.8608000 |
0.8372000 |
0.8829000 |
0.7336000 |
0.8926000 |
0.8427000 |
37.0 |
70.0 |
87 |
1000.00 |
4.21 |
54.02 |
0 |
54.02 |
0/1 |
| chr1 |
67438535 |
rs12131222 |
A |
T |
. |
PASS |
0.1573000 |
0.1643000 |
0.1171000 |
0.2634000 |
0.1063000 |
0.1615000 |
37.0 |
70.0 |
20 |
404.42 |
20.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
67442210 |
rs11208978 |
C |
T |
. |
PASS |
0.0719000 |
0.1225000 |
0.1171000 |
0.2078000 |
0.1002000 |
0.1208000 |
37.0 |
70.0 |
11 |
101.50 |
18.18 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
67442275 |
rs11208979 |
C |
T |
. |
PASS |
0.1573000 |
0.1643000 |
0.1171000 |
0.2634000 |
0.1074000 |
0.1617000 |
36.08 |
70.0 |
32 |
402.21 |
0.96 |
40.62 |
0 |
40.62 |
0/1 |
| chr1 |
67447450 |
rs12039172 |
A |
G |
. |
PASS |
0.1392000 |
0.1628000 |
0.1171000 |
0.2634000 |
0.1084000 |
0.1569000 |
37.0 |
70.0 |
21 |
154.95 |
0.00 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
67452322 |
rs17497828 |
G |
A |
. |
PASS |
0.1203000 |
0.1628000 |
0.1171000 |
0.2594000 |
0.1053000 |
0.1506000 |
37.0 |
70.0 |
10 |
146.29 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
67512861 |
rs2273680 |
G |
T |
. |
PASS |
0.0068000 |
0.0692000 |
0.2292000 |
0.0229000 |
0.0706000 |
0.0759000 |
37.0 |
70.0 |
17 |
246.37 |
11.76 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
67512903 |
rs1024229 |
G |
T |
. |
PASS |
0.7746000 |
0.6873000 |
0.6389000 |
0.6412000 |
0.7802000 |
0.7095000 |
37.0 |
70.0 |
46 |
660.33 |
11.30 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
67512920 |
rs1024230 |
A |
C |
. |
PASS |
0.7746000 |
0.6873000 |
0.6389000 |
0.6412000 |
0.7802000 |
0.7095000 |
36.57 |
70.0 |
56 |
952.38 |
10.71 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
67558739 |
rs6588237 |
C |
T |
. |
PASS |
0.9228000 |
0.9107000 |
0.9722000 |
0.8141000 |
0.9816000 |
0.9207000 |
37.0 |
70.0 |
48 |
658.47 |
7.50 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
67560897 |
rs10889653 |
A |
G |
. |
PASS |
0.9644000 |
0.9150000 |
0.9722000 |
0.8141000 |
0.9816000 |
0.9323000 |
37.0 |
70.0 |
21 |
154.95 |
23.81 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
67560956 |
rs11208997 |
C |
T |
. |
PASS |
0.9879000 |
0.9150000 |
0.9722000 |
0.8141000 |
0.9816000 |
0.9385000 |
37.0 |
70.0 |
54 |
473.32 |
6.02 |
29.63 |
0 |
29.63 |
0/1 |
| chr1 |
67577367 |
rs6588240 |
A |
T |
. |
PASS |
0.6641000 |
0.8256000 |
0.9077000 |
0.7624000 |
0.9202000 |
0.8053000 |
35.8 |
70.0 |
14 |
326.93 |
2.86 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
67591347 |
rs6691094 |
A |
G |
. |
PASS |
0.2859000 |
0.6614000 |
0.7907000 |
0.6412000 |
0.8027000 |
0.6118000 |
34.0 |
70.0 |
14 |
80.47 |
14.29 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
67633812 |
rs1884444 |
G |
T |
. |
PASS |
0.4713000 |
0.3689000 |
0.6369000 |
0.5239000 |
0.6207000 |
0.5302000 |
36.46 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67633963 |
rs11465770 |
C |
T |
. |
PASS |
0.0030000 |
0.0504000 |
0.0010000 |
0.0954000 |
0.0716000 |
0.0411000 |
36.14 |
70.0 |
23 |
471.08 |
11.80 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
67648460 |
rs6687620 |
T |
C |
. |
PASS |
0.9955000 |
0.9280000 |
0.9960000 |
0.8489000 |
0.9714000 |
0.9521000 |
37.0 |
70.0 |
24 |
967.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67685387 |
rs7530511 |
T |
C |
. |
PASS |
0.7632000 |
0.8501000 |
0.9871000 |
0.8569000 |
0.9519000 |
0.8760000 |
35.95 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
67685443 |
rs7518660 |
G |
A |
. |
PASS |
0.5061000 |
0.5476000 |
0.2530000 |
0.4563000 |
0.3027000 |
0.4111000 |
37.0 |
70.0 |
31 |
375.47 |
28.49 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
67706036 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
27 |
53.35 |
40.74 |
14.81 |
0 |
14.81 |
0/1 |
| chr1 |
67795319 |
rs1495963 |
T |
C |
. |
PASS |
0.7171000 |
0.9035000 |
0.8056000 |
0.9771000 |
0.9080000 |
0.8502000 |
35.5 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68032115 |
rs10789238 |
G |
A |
. |
PASS |
0.3570000 |
0.5058000 |
0.5347000 |
0.5487000 |
0.4571000 |
0.4714000 |
35.0 |
70.0 |
12 |
441.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68151980 |
rs2759219 |
T |
G |
. |
PASS |
0.6778000 |
0.8069000 |
0.6121000 |
0.8469000 |
0.8395000 |
0.7480000 |
37.0 |
70.0 |
16 |
628.69 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68152363 |
rs3783468 |
G |
A |
. |
PASS |
0.1483000 |
0.4971000 |
0.4425000 |
0.5288000 |
0.5992000 |
0.4203000 |
37.0 |
70.0 |
17 |
292.29 |
20.92 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
68173264 |
rs2295942 |
C |
T |
. |
PASS |
0.1611000 |
0.4885000 |
0.4216000 |
0.5129000 |
0.5920000 |
0.4137000 |
37.0 |
70.0 |
35 |
572.29 |
2.69 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
68299291 |
rs11209163 |
T |
G |
. |
PASS |
0.5189000 |
0.6628000 |
0.6190000 |
0.6352000 |
0.5624000 |
0.5909000 |
36.39 |
69.83 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68299331 |
rs12136827 |
C |
T |
. |
PASS |
0.0961000 |
0.2968000 |
0.2242000 |
0.3201000 |
0.3630000 |
0.2468000 |
35.96 |
69.78 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68598726 |
rs60606556 |
A |
AGGCAGC |
. |
PASS |
0.7005000 |
0.9323000 |
0.9187000 |
0.9304000 |
0.9335000 |
0.8682000 |
36.27 |
68.18 |
13 |
469.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68603432 |
rs1430754 |
C |
T |
. |
PASS |
0.0227000 |
0.1931000 |
0.0000000 |
0.1809000 |
0.1288000 |
0.0942000 |
36.2 |
70.0 |
25 |
506.83 |
16.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
68603586 |
rs983034 |
C |
T |
. |
PASS |
0.1067000 |
0.3372000 |
0.1419000 |
0.3519000 |
0.3200000 |
0.2366000 |
37.0 |
70.0 |
63 |
780.39 |
7.14 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
68620762 |
rs3762371 |
G |
A |
. |
PASS |
0.1717000 |
0.3660000 |
0.1567000 |
0.3817000 |
0.2986000 |
0.2626000 |
35.36 |
70.0 |
43 |
721.03 |
7.19 |
51.16 |
0 |
51.16 |
0/1 |
| chr1 |
68624878 |
rs3748705 |
C |
T |
. |
PASS |
0.2368000 |
0.4524000 |
0.4127000 |
0.3648000 |
0.3487000 |
0.3496000 |
35.59 |
69.41 |
69 |
1000.00 |
1.62 |
49.28 |
0 |
49.28 |
0/1 |
| chr1 |
68627568 |
rs74081400 |
C |
A |
. |
PASS |
0.2345000 |
0.4539000 |
0.3998000 |
0.3708000 |
0.3569000 |
0.3494000 |
37.0 |
69.31 |
87 |
1000.00 |
4.95 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
68627692 |
rs12029634 |
G |
T |
. |
PASS |
0.3533000 |
0.8141000 |
0.5585000 |
0.7535000 |
0.6524000 |
0.5972000 |
36.55 |
68.89 |
106 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68627939 |
rs79835885 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.11 |
76 |
114.71 |
26.61 |
11.84 |
0 |
11.84 |
0/1 |
| chr1 |
68627964 |
rs76873961 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.88 |
88 |
701.00 |
0.00 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
68628028 |
rs79146259 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
63.45 |
113 |
989.68 |
18.56 |
29.20 |
0 |
29.20 |
0/1 |
| chr1 |
68628032 |
rs79587317 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.21 |
119 |
607.71 |
14.15 |
20.17 |
0 |
20.17 |
0/1 |
| chr1 |
68628044 |
rs76648533 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.28 |
128 |
918.92 |
17.19 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
68628060 |
rs79330178 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.21 |
132 |
572.72 |
16.67 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
68628201 |
rs1808599 |
C |
T |
. |
PASS |
0.4092000 |
0.8199000 |
0.5585000 |
0.7535000 |
0.6616000 |
0.6146000 |
36.71 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68634030 |
rs1367447 |
C |
T |
. |
PASS |
0.1067000 |
0.1311000 |
0.2669000 |
0.2117000 |
0.2485000 |
0.1911000 |
37.0 |
70.0 |
38 |
855.64 |
3.95 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
68896644 |
rs932783 |
G |
A |
. |
PASS |
0.6210000 |
0.4481000 |
0.7450000 |
0.3499000 |
0.5982000 |
0.5631000 |
35.67 |
70.0 |
16 |
283.29 |
9.72 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
68900857 |
rs11269074,rs71692096 |
GCTCTTGTTTCTTTTTCTGGCTT |
G |
. |
PASS |
0.6354000 |
0.4971000 |
0.5972000 |
0.3350000 |
0.4796000 |
0.5178000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68905358 |
rs1925955 |
G |
C |
. |
PASS |
0.8570000 |
0.6715000 |
0.8641000 |
0.3917000 |
0.6227000 |
0.6935000 |
36.04 |
69.2 |
25 |
980.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68944792 |
rs3762282 |
C |
G |
. |
PASS |
0.1460000 |
0.0447000 |
0.0714000 |
0.0517000 |
0.0399000 |
0.0773000 |
37.0 |
70.0 |
11 |
55.58 |
72.73 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
68947318 |
rs3833522 |
C |
CA |
. |
PASS |
0.7761000 |
0.6009000 |
0.3115000 |
0.8181000 |
0.5450000 |
0.6216000 |
37.0 |
70.0 |
24 |
951.42 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
68948280 |
rs3790479 |
A |
C |
. |
PASS |
0.1460000 |
0.0447000 |
0.0714000 |
0.0517000 |
0.0399000 |
0.0773000 |
36.6 |
69.27 |
64 |
1000.00 |
9.79 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
68952564 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.37 |
70.0 |
48 |
1000.00 |
0.00 |
79.17 |
1 |
79.17 |
0/1 |
| chr1 |
68952564 |
. |
AACACACAC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.73 |
70.0 |
47 |
244.94 |
43.33 |
23.40 |
1 |
78.72 |
0/1 |
| chr1 |
68952564 |
. |
AACACACAC |
AAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
47 |
244.94 |
11.22 |
46.81 |
1 |
78.72 |
0/1 |
| chr1 |
68952565 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.37 |
70.0 |
49 |
1000.00 |
2.04 |
77.55 |
1 |
77.55 |
0/1 |
| chr1 |
68960349 |
rs78030459 |
T |
C |
. |
PASS |
0.1445000 |
0.0447000 |
0.0694000 |
0.0497000 |
0.0399000 |
0.0761000 |
37.0 |
69.28 |
38 |
1000.00 |
3.09 |
76.32 |
0 |
76.32 |
0/1 |
| chr1 |
68960404 |
rs72674357 |
A |
T |
. |
PASS |
0.0061000 |
0.0317000 |
0.0714000 |
0.0517000 |
0.0399000 |
0.0385000 |
36.33 |
70.0 |
21 |
640.03 |
1.59 |
85.71 |
0 |
85.71 |
0/1 |
| chr1 |
68960411 |
rs72674358 |
T |
G |
. |
PASS |
0.0061000 |
0.0317000 |
0.0714000 |
0.0517000 |
0.0399000 |
0.0385000 |
35.29 |
70.0 |
16 |
476.00 |
5.36 |
87.50 |
0 |
87.50 |
0/1 |
| chr1 |
69614582 |
rs11209397 |
A |
G |
. |
PASS |
0.3018000 |
0.6657000 |
0.4940000 |
0.5984000 |
0.5378000 |
0.4966000 |
36.53 |
69.61 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
70226125 |
rs12407496 |
T |
C |
. |
PASS |
0.2141000 |
0.1888000 |
0.1419000 |
0.1680000 |
0.1452000 |
0.1733000 |
37.0 |
70.0 |
15 |
173.00 |
33.33 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
70297028 |
rs72675088 |
A |
G |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0007987 |
36.2 |
70.0 |
27 |
500.81 |
5.93 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
70297051 |
rs12734666 |
A |
G |
. |
PASS |
0.5182000 |
0.5317000 |
0.6835000 |
0.5775000 |
0.4816000 |
0.5581000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
70385301 |
rs11802766 |
C |
T |
. |
PASS |
0.1800000 |
0.0231000 |
0.0000000 |
0.0229000 |
0.0153000 |
0.0583000 |
37.0 |
70.0 |
30 |
420.24 |
18.97 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
70397087 |
rs7530457 |
T |
C |
. |
PASS |
0.5522000 |
0.5216000 |
0.6776000 |
0.5626000 |
0.4918000 |
0.5635000 |
37.0 |
70.0 |
10 |
188.05 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
70460304 |
rs72676879 |
A |
G |
. |
PASS |
0.0182000 |
0.0058000 |
0.0000000 |
0.0070000 |
0.0000000 |
0.0069888 |
34.18 |
70.0 |
46 |
491.13 |
7.16 |
36.96 |
0 |
36.96 |
0/1 |
| chr1 |
70493773 |
rs72676881 |
A |
G |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0005990 |
35.5 |
70.0 |
14 |
247.54 |
10.71 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
70587360 |
rs641909 |
C |
T |
. |
PASS |
0.8366000 |
0.7277000 |
0.6280000 |
0.7137000 |
0.7362000 |
0.7352000 |
33.4 |
70.0 |
10 |
346.19 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
70596535 |
rs6424382 |
C |
T |
. |
PASS |
0.5764000 |
0.6326000 |
0.5308000 |
0.6223000 |
0.5072000 |
0.5707000 |
36.81 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
70646748 |
rs72678609 |
T |
C |
. |
PASS |
0.0000000 |
0.0072000 |
0.0000000 |
0.0189000 |
0.0092000 |
0.0065895 |
36.33 |
70.0 |
26 |
629.13 |
8.55 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
70728626 |
. |
T |
TAAAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
13 |
121.67 |
46.15 |
23.08 |
0 |
38.46 |
0/1 |
| chr1 |
70883840 |
rs1145920 |
A |
G |
. |
PASS |
0.7837000 |
0.8833000 |
0.8294000 |
0.7197000 |
0.8088000 |
0.7987000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
70896165 |
rs17131305 |
G |
A |
. |
PASS |
0.0696000 |
0.2032000 |
0.2976000 |
0.0765000 |
0.1902000 |
0.1589000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
70904523 |
rs112004441 |
T |
TTGTG |
. |
PASS |
0.3177000 |
0.4467000 |
0.4097000 |
0.3509000 |
0.3763000 |
0.3722000 |
36.29 |
70.0 |
70 |
1000.00 |
1.43 |
80.00 |
0 |
97.14 |
0/1 |
| chr1 |
70942350 |
rs12129044 |
A |
C |
. |
PASS |
0.3343000 |
0.5893000 |
0.6409000 |
0.5686000 |
0.5460000 |
0.5198000 |
36.7 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
70997152 |
rs505292 |
T |
C |
. |
PASS |
0.8238000 |
0.7709000 |
0.9206000 |
0.9573000 |
0.9560000 |
0.8886000 |
36.4 |
69.9 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
71256507 |
rs2260497 |
G |
C |
. |
PASS |
0.4418000 |
0.4669000 |
0.6141000 |
0.5139000 |
0.6145000 |
0.5282000 |
36.08 |
70.0 |
73 |
805.66 |
0.84 |
35.62 |
0 |
35.62 |
0/1 |
| chr1 |
71419499 |
rs571705 |
C |
T |
. |
PASS |
0.8101000 |
0.8977000 |
0.9544000 |
0.8569000 |
0.8466000 |
0.8678000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
71477315 |
rs5680 |
A |
T |
. |
PASS |
0.6006000 |
0.5692000 |
0.6736000 |
0.3857000 |
0.3436000 |
0.5176000 |
37.0 |
70.0 |
19 |
754.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
71537943 |
rs11209745 |
A |
G |
. |
PASS |
0.1483000 |
0.4366000 |
0.7133000 |
0.2584000 |
0.3476000 |
0.3630000 |
35.5 |
70.0 |
29 |
524.55 |
3.45 |
55.17 |
0 |
55.17 |
0/1 |
| chr1 |
71544079 |
rs10574763 |
CAAG |
C |
. |
PASS |
0.0113000 |
0.2911000 |
0.2887000 |
0.1620000 |
0.2239000 |
0.1777000 |
36.5 |
70.0 |
16 |
324.52 |
4.17 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
72058405 |
rs1334005 |
T |
C |
. |
PASS |
0.6634000 |
0.9280000 |
0.8482000 |
0.9960000 |
0.8978000 |
0.8498000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
72058552 |
rs1413368 |
G |
A |
. |
PASS |
0.6634000 |
0.9280000 |
0.8472000 |
0.9960000 |
0.8978000 |
0.8496000 |
36.67 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
72242039 |
rs6424448 |
G |
A |
. |
PASS |
0.4115000 |
0.8415000 |
0.8790000 |
0.8757000 |
0.8722000 |
0.7484000 |
35.5 |
70.0 |
16 |
241.52 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
72293633 |
rs495411 |
G |
A |
. |
PASS |
0.5424000 |
0.3012000 |
0.6637000 |
0.3360000 |
0.4489000 |
0.4736000 |
37.0 |
70.0 |
23 |
107.16 |
15.65 |
21.74 |
0 |
21.74 |
0/1 |
| chr1 |
72740634 |
rs7549792 |
G |
A |
. |
PASS |
0.5371000 |
0.3775000 |
0.1369000 |
0.4821000 |
0.3998000 |
0.3966000 |
36.64 |
69.7 |
55 |
1000.00 |
2.42 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
72740734 |
rs9326098 |
C |
G |
. |
PASS |
0.0287000 |
0.2594000 |
0.1230000 |
0.3012000 |
0.3446000 |
0.1961000 |
37.0 |
69.85 |
28 |
422.11 |
18.13 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
74575182 |
rs1340472 |
C |
T |
. |
PASS |
0.5053000 |
0.8876000 |
0.9573000 |
0.9085000 |
0.8875000 |
0.8049000 |
36.27 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
74663814 |
rs1412825 |
C |
G |
. |
PASS |
0.1528000 |
0.3890000 |
0.7391000 |
0.4652000 |
0.5521000 |
0.4443000 |
35.0 |
70.0 |
17 |
389.44 |
2.94 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
74665493 |
rs792310 |
G |
A |
. |
PASS |
0.1619000 |
0.3890000 |
0.7391000 |
0.4642000 |
0.5532000 |
0.4467000 |
36.56 |
69.26 |
55 |
917.77 |
20.61 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
74670172 |
rs12046751 |
A |
G |
. |
PASS |
0.1362000 |
0.4280000 |
0.1171000 |
0.4085000 |
0.1840000 |
0.2368000 |
36.29 |
70.0 |
53 |
506.10 |
19.53 |
32.08 |
0 |
32.08 |
0/1 |
| chr1 |
74671074 |
rs55882158 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0010000 |
0.0003994 |
36.74 |
70.0 |
87 |
1000.00 |
7.53 |
54.02 |
0 |
54.02 |
0/1 |
| chr1 |
74671519 |
rs571848 |
A |
G |
. |
PASS |
0.1528000 |
0.3890000 |
0.7391000 |
0.4652000 |
0.5532000 |
0.4445000 |
36.61 |
70.0 |
51 |
1000.00 |
4.93 |
60.78 |
0 |
60.78 |
0/1 |
| chr1 |
74819077 |
rs6424586 |
T |
G |
. |
PASS |
0.8661000 |
0.9380000 |
1.0000000 |
0.9483000 |
0.9663000 |
0.9391000 |
36.29 |
69.41 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
75006027 |
rs3895907 |
A |
G |
. |
PASS |
0.1936000 |
0.3847000 |
0.1468000 |
0.5487000 |
0.4110000 |
0.3245000 |
37.0 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
75006076 |
rs3845348 |
G |
A |
. |
PASS |
0.8737000 |
0.9597000 |
0.8938000 |
0.9642000 |
0.9172000 |
0.9163000 |
35.5 |
70.0 |
16 |
608.82 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
75036783 |
rs9326115 |
T |
C |
. |
PASS |
0.9070000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9750000 |
36.4 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
75036812 |
rs9326116 |
C |
T |
. |
PASS |
0.9070000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9748000 |
36.13 |
69.64 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
75037845 |
rs12723334 |
A |
G |
. |
PASS |
0.2466000 |
0.3314000 |
0.5843000 |
0.3549000 |
0.3855000 |
0.3752000 |
37.0 |
70.0 |
84 |
1000.00 |
2.38 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
75038228 |
rs11580409 |
A |
C |
. |
PASS |
0.2466000 |
0.3300000 |
0.5794000 |
0.3579000 |
0.3916000 |
0.3758000 |
36.0 |
70.0 |
43 |
812.42 |
1.36 |
55.81 |
0 |
55.81 |
0/1 |
| chr1 |
75072264 |
rs41289216 |
G |
T |
. |
PASS |
0.2330000 |
0.4524000 |
0.1141000 |
0.5010000 |
0.3507000 |
0.3163000 |
36.25 |
70.0 |
30 |
529.40 |
22.50 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
75097426 |
rs11210490 |
G |
C |
. |
PASS |
0.2284000 |
0.4741000 |
0.1141000 |
0.5268000 |
0.3384000 |
0.3209000 |
36.56 |
70.0 |
52 |
922.65 |
3.70 |
51.92 |
0 |
51.92 |
0/1 |
| chr1 |
75108863 |
rs623171 |
A |
C |
. |
PASS |
0.8843000 |
0.7061000 |
0.3919000 |
0.6839000 |
0.6503000 |
0.6745000 |
37.0 |
70.0 |
12 |
94.34 |
50.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
75172652 |
rs17552114 |
T |
C |
. |
PASS |
0.0015000 |
0.0303000 |
0.0000000 |
0.0417000 |
0.0082000 |
0.0145770 |
36.39 |
70.0 |
95 |
1000.00 |
4.39 |
62.11 |
0 |
62.11 |
0/1 |
| chr1 |
75190452 |
rs1051122 |
C |
T |
. |
PASS |
0.8306000 |
0.7954000 |
0.7728000 |
0.7455000 |
0.7106000 |
0.7736000 |
36.4 |
70.0 |
58 |
616.36 |
4.14 |
34.48 |
0 |
34.48 |
0/1 |
| chr1 |
75199152 |
rs277373 |
C |
T |
. |
PASS |
0.9856000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9960000 |
36.23 |
68.71 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
75214390 |
rs749690 |
G |
C |
. |
PASS |
0.0756000 |
0.4222000 |
0.0079000 |
0.5437000 |
0.1922000 |
0.2268000 |
37.0 |
70.0 |
28 |
422.11 |
6.59 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
75609049 |
rs12041465 |
A |
C |
. |
PASS |
0.0968000 |
0.3343000 |
0.7956000 |
0.1710000 |
0.2873000 |
0.3225000 |
37.0 |
70.0 |
18 |
670.47 |
2.61 |
94.44 |
0 |
100.00 |
1/1 |
| chr1 |
75672376 |
rs1948874 |
A |
G |
. |
PASS |
0.1770000 |
0.4669000 |
0.8323000 |
0.3966000 |
0.4202000 |
0.4407000 |
37.0 |
70.0 |
64 |
1000.00 |
2.27 |
51.56 |
0 |
51.56 |
0/1 |
| chr1 |
75680433 |
rs687715 |
G |
A |
. |
PASS |
0.5068000 |
0.3012000 |
0.1548000 |
0.3728000 |
0.3865000 |
0.3570000 |
36.25 |
70.0 |
30 |
533.55 |
16.67 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
75681511 |
rs595009 |
T |
C |
. |
PASS |
0.8767000 |
0.8862000 |
0.9960000 |
0.8300000 |
0.8967000 |
0.8966000 |
36.29 |
70.0 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
75684102 |
rs72682021 |
T |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
13 |
300.18 |
8.55 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
75685403 |
rs600734 |
T |
C |
. |
PASS |
0.6551000 |
0.3098000 |
0.1548000 |
0.3757000 |
0.3947000 |
0.3996000 |
37.0 |
70.0 |
14 |
259.55 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
75716925 |
rs588098 |
C |
T |
. |
PASS |
0.5424000 |
0.7637000 |
0.9494000 |
0.7316000 |
0.8067000 |
0.7446000 |
36.26 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
75766186 |
rs623850 |
G |
A |
. |
PASS |
0.7171000 |
0.6671000 |
0.8363000 |
0.5865000 |
0.5399000 |
0.6733000 |
37.0 |
70.0 |
14 |
176.01 |
4.76 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
76047910 |
rs1831701 |
G |
A |
. |
PASS |
0.2171000 |
0.3242000 |
0.8938000 |
0.3708000 |
0.4857000 |
0.4515000 |
37.0 |
66.62 |
29 |
423.25 |
4.24 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
76048072 |
rs1831702 |
A |
C |
. |
PASS |
0.4274000 |
0.3386000 |
0.8938000 |
0.3718000 |
0.4867000 |
0.5094000 |
36.0 |
70.0 |
22 |
386.39 |
1.52 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
76107339 |
rs211716 |
A |
G |
. |
PASS |
0.6309000 |
0.4870000 |
0.9504000 |
0.3797000 |
0.5869000 |
0.6162000 |
35.5 |
70.0 |
26 |
533.58 |
15.38 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
76107473 |
rs211715 |
C |
G |
. |
PASS |
0.6309000 |
0.4870000 |
0.9504000 |
0.3797000 |
0.5869000 |
0.6162000 |
37.0 |
70.0 |
38 |
475.56 |
1.40 |
39.47 |
0 |
39.47 |
0/1 |
| chr1 |
76190569 |
rs1251075 |
C |
G |
. |
PASS |
0.5998000 |
0.3602000 |
0.0228000 |
0.3250000 |
0.2076000 |
0.3187000 |
37.0 |
70.0 |
56 |
1000.00 |
7.98 |
60.71 |
0 |
60.71 |
0/1 |
| chr1 |
76194054 |
rs7524467 |
C |
G |
. |
PASS |
0.1362000 |
0.2997000 |
0.0228000 |
0.3052000 |
0.2025000 |
0.1829000 |
36.14 |
70.0 |
28 |
451.88 |
7.14 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
76194229 |
rs11316888 |
GT |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.53 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76198436 |
rs2275378 |
T |
C |
. |
PASS |
0.2874000 |
0.3256000 |
0.0228000 |
0.3241000 |
0.2076000 |
0.2312000 |
35.67 |
70.0 |
67 |
857.64 |
6.63 |
40.30 |
0 |
40.30 |
0/1 |
| chr1 |
76198785 |
rs3818855 |
G |
A |
. |
PASS |
0.2874000 |
0.3256000 |
0.0228000 |
0.3231000 |
0.2076000 |
0.2310000 |
36.03 |
70.0 |
72 |
1000.00 |
7.96 |
51.39 |
0 |
51.39 |
0/1 |
| chr1 |
76199345 |
rs2153126 |
C |
G |
. |
PASS |
0.2874000 |
0.3256000 |
0.0228000 |
0.3231000 |
0.2076000 |
0.2310000 |
34.88 |
70.0 |
27 |
556.18 |
2.18 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
76205643 |
rs12127402 |
C |
A |
. |
PASS |
0.1619000 |
0.3026000 |
0.0228000 |
0.3052000 |
0.2025000 |
0.1901000 |
37.0 |
70.0 |
25 |
431.15 |
3.08 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
76209754 |
rs12123977 |
G |
A |
. |
PASS |
0.1362000 |
0.3026000 |
0.0228000 |
0.3052000 |
0.2025000 |
0.1833000 |
36.53 |
70.0 |
84 |
1000.00 |
13.17 |
60.71 |
0 |
60.71 |
0/1 |
| chr1 |
76209792 |
rs1146579 |
T |
C |
. |
PASS |
0.5953000 |
0.3617000 |
0.0228000 |
0.3241000 |
0.2076000 |
0.3175000 |
36.71 |
70.0 |
69 |
1000.00 |
18.84 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
76209935 |
rs1146580 |
T |
C |
. |
PASS |
0.5991000 |
0.3617000 |
0.0228000 |
0.3241000 |
0.2076000 |
0.3185000 |
37.0 |
69.82 |
69 |
929.42 |
0.10 |
40.58 |
0 |
40.58 |
0/1 |
| chr1 |
76210289 |
rs11161510 |
C |
T |
. |
PASS |
0.1377000 |
0.2522000 |
0.0238000 |
0.3012000 |
0.1973000 |
0.1751000 |
37.0 |
70.0 |
58 |
753.67 |
6.30 |
39.66 |
0 |
39.66 |
0/1 |
| chr1 |
76227022 |
rs1061337 |
A |
G |
. |
PASS |
0.1362000 |
0.2522000 |
0.0228000 |
0.3002000 |
0.1973000 |
0.1743000 |
36.67 |
70.0 |
71 |
1000.00 |
9.78 |
50.70 |
0 |
50.70 |
0/1 |
| chr1 |
76252011 |
rs1146634 |
G |
A |
. |
PASS |
0.7920000 |
0.5303000 |
0.0397000 |
0.6113000 |
0.4080000 |
0.4930000 |
36.56 |
70.0 |
55 |
917.77 |
2.02 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
76257892 |
rs12703 |
A |
T |
. |
PASS |
0.9939000 |
0.8055000 |
0.7371000 |
0.9374000 |
0.9550000 |
0.8972000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76259677 |
rs141490560,rs372421559 |
ACCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT |
A |
. |
PASS |
0.1604000 |
0.2781000 |
0.0169000 |
0.2843000 |
0.2076000 |
0.1819000 |
37.0 |
70.0 |
16 |
482.55 |
8.93 |
87.50 |
0 |
87.50 |
0/1 |
| chr1 |
76269372 |
rs5745323 |
T |
C |
. |
PASS |
0.4569000 |
0.4280000 |
0.0397000 |
0.5875000 |
0.3967000 |
0.3834000 |
35.91 |
70.0 |
14 |
372.85 |
11.69 |
78.57 |
0 |
78.57 |
0/1 |
| chr1 |
76272837 |
rs3737574 |
A |
G |
. |
PASS |
0.0265000 |
0.2248000 |
0.6895000 |
0.2714000 |
0.5061000 |
0.3303000 |
37.0 |
70.0 |
57 |
965.53 |
5.14 |
49.12 |
0 |
49.12 |
0/1 |
| chr1 |
76276353 |
rs12122939 |
T |
C |
. |
PASS |
0.1543000 |
0.2248000 |
0.0169000 |
0.2783000 |
0.2014000 |
0.1705000 |
35.5 |
70.0 |
19 |
232.50 |
7.89 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
76333163 |
rs5745433 |
T |
G |
. |
PASS |
0.1536000 |
0.2161000 |
0.0169000 |
0.2604000 |
0.2014000 |
0.1655000 |
35.4 |
70.0 |
20 |
505.72 |
0.00 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
76333352 |
rs5745437 |
G |
A |
. |
PASS |
0.0038000 |
0.0231000 |
0.0010000 |
0.0646000 |
0.0235000 |
0.0220000 |
36.25 |
70.0 |
24 |
551.61 |
4.17 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
76344011 |
rs1493367 |
C |
A |
. |
PASS |
0.6846000 |
0.7781000 |
0.9851000 |
0.7515000 |
0.7935000 |
0.7927000 |
37.0 |
70.0 |
22 |
879.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76344705 |
rs5745448 |
T |
C |
. |
PASS |
0.0242000 |
0.2349000 |
0.6964000 |
0.3022000 |
0.5000000 |
0.3375000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76344711 |
rs5745449 |
A |
T |
. |
PASS |
0.6846000 |
0.7781000 |
0.9851000 |
0.7515000 |
0.7935000 |
0.7927000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76345884 |
rs2307078 |
T |
A |
. |
PASS |
0.0242000 |
0.2349000 |
0.6964000 |
0.3022000 |
0.5000000 |
0.3375000 |
35.96 |
70.0 |
23 |
897.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76346920 |
rs5745466 |
C |
CAT |
. |
PASS |
0.8411000 |
0.9914000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9567000 |
35.75 |
70.0 |
22 |
849.87 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76378361 |
rs5020911 |
T |
A |
. |
PASS |
0.1490000 |
0.3199000 |
0.6935000 |
0.3529000 |
0.5020000 |
0.3922000 |
34.67 |
70.0 |
18 |
577.01 |
8.89 |
83.33 |
0 |
100.00 |
0/1 |
| chr1 |
76378363 |
rs28693610 |
T |
A |
. |
PASS |
0.0401000 |
0.2262000 |
0.5724000 |
0.2972000 |
0.4581000 |
0.3063000 |
35.29 |
70.0 |
19 |
147.82 |
15.79 |
31.58 |
0 |
36.84 |
0/1 |
| chr1 |
76387748 |
rs12567390 |
T |
A |
. |
PASS |
0.0121000 |
0.2579000 |
0.7054000 |
0.3032000 |
0.4857000 |
0.3367000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76397972 |
rs3795251 |
C |
T |
. |
PASS |
0.1884000 |
0.2983000 |
0.7073000 |
0.3221000 |
0.5041000 |
0.3966000 |
36.79 |
69.65 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
76745338 |
rs6675148 |
G |
A |
. |
PASS |
0.6853000 |
0.6095000 |
0.3522000 |
0.6034000 |
0.4888000 |
0.5529000 |
35.25 |
70.0 |
114 |
1000.00 |
0.22 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
76779444 |
rs17626151 |
G |
A |
. |
PASS |
0.0008000 |
0.0216000 |
0.0010000 |
0.0328000 |
0.0041000 |
0.0107830 |
37.0 |
70.0 |
14 |
176.01 |
4.76 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
76784636 |
rs2392030 |
T |
C |
. |
PASS |
0.4440000 |
0.6542000 |
0.5903000 |
0.5189000 |
0.6759000 |
0.5629000 |
37.0 |
70.0 |
101 |
1000.00 |
0.39 |
40.59 |
0 |
40.59 |
0/1 |
| chr1 |
76878156 |
rs17098942 |
C |
T |
. |
PASS |
0.0658000 |
0.1499000 |
0.3988000 |
0.2346000 |
0.4427000 |
0.2520000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
77093180 |
rs1184626 |
C |
A |
. |
PASS |
0.6407000 |
0.5173000 |
0.2421000 |
0.3966000 |
0.3773000 |
0.4429000 |
37.0 |
69.38 |
67 |
1000.00 |
14.55 |
47.76 |
0 |
47.76 |
0/1 |
| chr1 |
77165502 |
rs2764657 |
G |
T |
. |
PASS |
0.9607000 |
0.9597000 |
0.8631000 |
0.9095000 |
0.7935000 |
0.8980000 |
35.0 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
77165835 |
rs2619599 |
G |
C |
. |
PASS |
0.9607000 |
0.9582000 |
0.8661000 |
0.9076000 |
0.7935000 |
0.8980000 |
36.17 |
69.43 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
77166140 |
rs61784815 |
A |
G |
. |
PASS |
0.0038000 |
0.2608000 |
0.0159000 |
0.1322000 |
0.1115000 |
0.0887000 |
37.0 |
69.88 |
67 |
1000.00 |
7.51 |
49.25 |
0 |
49.25 |
0/1 |
| chr1 |
77397287 |
rs3113983 |
T |
C |
. |
PASS |
0.6611000 |
0.4625000 |
0.4306000 |
0.5905000 |
0.6196000 |
0.5649000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
77627096 |
rs839825 |
G |
A |
. |
PASS |
0.9584000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9886000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
77627450 |
rs17099983 |
T |
C |
. |
PASS |
0.0091000 |
0.0231000 |
0.1558000 |
0.0388000 |
0.2566000 |
0.0948000 |
35.29 |
70.0 |
14 |
205.77 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
77629444 |
rs2293253 |
T |
C |
. |
PASS |
0.0091000 |
0.0231000 |
0.1558000 |
0.0388000 |
0.2566000 |
0.0948000 |
34.33 |
70.0 |
21 |
256.24 |
6.35 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
77632270 |
rs1721144 |
T |
C |
. |
PASS |
0.9508000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9866000 |
37.0 |
68.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
77634948 |
rs1779199 |
G |
A |
. |
PASS |
0.9508000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9866000 |
37.0 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
77759578 |
rs2815311 |
A |
G |
. |
PASS |
0.0613000 |
0.1023000 |
0.1359000 |
0.2038000 |
0.0838000 |
0.1150000 |
36.67 |
70.0 |
91 |
1000.00 |
7.69 |
39.56 |
0 |
39.56 |
0/1 |
| chr1 |
77763542 |
rs1167206 |
G |
A |
. |
PASS |
0.9251000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9788000 |
35.6 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78024284 |
rs6675743 |
T |
C |
. |
PASS |
0.5401000 |
0.8357000 |
0.7411000 |
0.7614000 |
0.6391000 |
0.6853000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78024345 |
rs79671213 |
C |
CTAT |
. |
PASS |
0.3260000 |
0.8170000 |
0.7411000 |
0.7465000 |
0.6207000 |
0.6196000 |
36.53 |
70.0 |
42 |
1000.00 |
2.56 |
97.62 |
0 |
100.00 |
1/1 |
| chr1 |
78033981 |
rs145860524 |
AAAATG |
A |
. |
PASS |
0.2867000 |
0.7767000 |
0.5992000 |
0.7078000 |
0.4611000 |
0.5361000 |
36.18 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78045369 |
rs1565852 |
G |
A |
. |
PASS |
0.5008000 |
0.7983000 |
0.7381000 |
0.7247000 |
0.4928000 |
0.6332000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78269207 |
rs7525870 |
G |
A |
. |
PASS |
0.1914000 |
0.1988000 |
0.4157000 |
0.2734000 |
0.0798000 |
0.2322000 |
35.8 |
68.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78276977 |
rs4121165 |
G |
A |
. |
PASS |
0.1770000 |
0.1585000 |
0.4167000 |
0.2177000 |
0.0593000 |
0.2079000 |
36.43 |
69.14 |
108 |
1000.00 |
4.76 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
78312788 |
rs7417104 |
A |
G |
. |
PASS |
0.9501000 |
0.8055000 |
0.8998000 |
0.9026000 |
0.8609000 |
0.8930000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78313494 |
rs10873956 |
G |
A |
. |
PASS |
0.8782000 |
0.7983000 |
0.8998000 |
0.9026000 |
0.8609000 |
0.8730000 |
36.35 |
69.05 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78314080 |
rs6695986 |
A |
G |
. |
PASS |
0.3601000 |
0.6844000 |
0.7540000 |
0.7942000 |
0.7076000 |
0.6394000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78314263 |
rs7410814 |
G |
A |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.96 |
70.0 |
23 |
901.21 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78383467 |
rs1749913 |
G |
A |
. |
PASS |
0.7095000 |
0.7579000 |
0.7669000 |
0.8708000 |
0.7280000 |
0.7638000 |
36.68 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78392446 |
rs1166698 |
G |
A |
. |
PASS |
0.0106000 |
0.1167000 |
0.3800000 |
0.2107000 |
0.0665000 |
0.1508000 |
36.5 |
70.0 |
44 |
825.58 |
15.91 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
78399207 |
rs4483454 |
C |
G |
. |
PASS |
0.4327000 |
0.6916000 |
0.7669000 |
0.8131000 |
0.7004000 |
0.6645000 |
36.25 |
70.0 |
16 |
616.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78430094 |
. |
T |
TAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
10 |
88.92 |
60.00 |
20.00 |
0 |
40.00 |
0/1 |
| chr1 |
78430689 |
rs11409017 |
A |
AG |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
35.83 |
69.51 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78471060 |
rs11384806 |
T |
TC |
. |
PASS |
0.8729000 |
0.8040000 |
0.9127000 |
0.9264000 |
0.8650000 |
0.8806000 |
37.0 |
70.0 |
10 |
298.32 |
0.00 |
90.00 |
0 |
90.00 |
0/1 |
| chr1 |
78478675 |
rs3790586 |
G |
A |
. |
PASS |
0.4312000 |
0.6931000 |
0.7708000 |
0.8181000 |
0.6994000 |
0.6659000 |
36.43 |
70.0 |
21 |
829.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78512053 |
. |
C |
CCGCCGCGCCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
70.0 |
44 |
352.52 |
3.15 |
29.55 |
0 |
29.55 |
0/1 |
| chr1 |
78533840 |
rs638668 |
T |
C |
. |
PASS |
0.1634000 |
0.1585000 |
0.5069000 |
0.2624000 |
0.1053000 |
0.2404000 |
35.76 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78557486 |
rs485005 |
A |
G |
. |
PASS |
0.1604000 |
0.1585000 |
0.5050000 |
0.2594000 |
0.1043000 |
0.2384000 |
35.71 |
69.11 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78557514 |
rs631045 |
G |
A |
. |
PASS |
0.1604000 |
0.1585000 |
0.5040000 |
0.2594000 |
0.1053000 |
0.2384000 |
36.57 |
69.14 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78557608 |
rs630640 |
A |
G |
. |
PASS |
0.1604000 |
0.1585000 |
0.5040000 |
0.2594000 |
0.1043000 |
0.2382000 |
35.59 |
70.0 |
17 |
650.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78557664 |
rs630245 |
A |
C |
. |
PASS |
0.1604000 |
0.1585000 |
0.5040000 |
0.2594000 |
0.1043000 |
0.2382000 |
36.7 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78585086 |
rs540742 |
T |
C |
. |
PASS |
0.2186000 |
0.1758000 |
0.6637000 |
0.2266000 |
0.2352000 |
0.3071000 |
36.25 |
70.0 |
59 |
1000.00 |
6.89 |
54.24 |
0 |
54.24 |
0/1 |
| chr1 |
78601465 |
rs3838409 |
C |
CT |
. |
PASS |
0.2466000 |
0.2161000 |
0.7837000 |
0.2634000 |
0.2669000 |
0.3578000 |
35.8 |
70.0 |
37 |
610.19 |
0.32 |
45.95 |
0 |
51.35 |
0/1 |
| chr1 |
78688183 |
rs658377 |
G |
A |
. |
PASS |
0.6354000 |
0.4135000 |
0.6657000 |
0.3588000 |
0.3773000 |
0.5048000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
78958491 |
rs35227129 |
C |
T |
. |
PASS |
0.0076000 |
0.0476000 |
0.0010000 |
0.0944000 |
0.0184000 |
0.0313000 |
35.86 |
70.0 |
77 |
1000.00 |
6.49 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
78961585 |
rs1555541 |
T |
C |
. |
PASS |
0.5968000 |
0.3934000 |
0.5982000 |
0.3479000 |
0.3712000 |
0.4748000 |
35.91 |
70.0 |
28 |
330.73 |
1.95 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
78961651 |
rs10489787 |
A |
T |
. |
PASS |
0.2186000 |
0.1182000 |
0.0764000 |
0.2177000 |
0.1503000 |
0.1625000 |
37.0 |
66.0 |
12 |
136.11 |
20.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
79093818 |
rs273259 |
A |
G |
. |
PASS |
0.3608000 |
0.3545000 |
0.7510000 |
0.3449000 |
0.4100000 |
0.4449000 |
35.59 |
70.0 |
40 |
533.21 |
9.41 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
79094081 |
rs1333973 |
T |
A |
. |
PASS |
0.3011000 |
0.3516000 |
0.7510000 |
0.3439000 |
0.4100000 |
0.4285000 |
37.0 |
70.0 |
62 |
1000.00 |
4.59 |
53.23 |
0 |
53.23 |
0/1 |
| chr1 |
79094593 |
rs273257 |
A |
G |
. |
PASS |
0.9992000 |
0.9957000 |
1.0000000 |
0.9771000 |
0.9949000 |
0.9936000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
79095581 |
rs987495 |
T |
C |
. |
PASS |
0.1195000 |
0.2709000 |
0.2450000 |
0.2505000 |
0.2342000 |
0.2145000 |
36.39 |
69.66 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
79106899 |
rs273252 |
T |
C |
. |
PASS |
0.4425000 |
0.3617000 |
0.7510000 |
0.3588000 |
0.4039000 |
0.4690000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
79107140 |
rs35466823 |
G |
T |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0139000 |
0.0000000 |
0.0031949 |
36.45 |
70.0 |
39 |
752.94 |
7.69 |
56.41 |
0 |
56.41 |
0/1 |
| chr1 |
79128320 |
rs11577395 |
A |
G |
. |
PASS |
0.5197000 |
0.3256000 |
0.4266000 |
0.4225000 |
0.4530000 |
0.4415000 |
37.0 |
70.0 |
12 |
56.72 |
16.67 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
79128570 |
. |
G |
GT |
. |
PASS |
0.4781000 |
0.3228000 |
0.4266000 |
0.4225000 |
0.4479000 |
0.4291000 |
36.08 |
70.0 |
53 |
854.44 |
5.37 |
49.06 |
0 |
49.06 |
0/1 |
| chr1 |
79215916 |
rs1780742 |
T |
G |
. |
PASS |
0.8495000 |
0.9164000 |
0.9792000 |
0.8877000 |
0.9550000 |
0.9131000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
79216267 |
rs1780743 |
G |
C |
. |
PASS |
0.8480000 |
0.9006000 |
0.9792000 |
0.8559000 |
0.9080000 |
0.8950000 |
37.0 |
69.0 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
79357360 |
rs2275902 |
G |
C |
. |
PASS |
0.2905000 |
0.2046000 |
0.2312000 |
0.3091000 |
0.2004000 |
0.2528000 |
36.33 |
70.0 |
40 |
582.84 |
5.00 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
79383300 |
rs5775467 |
CA |
C |
. |
PASS |
0.2731000 |
0.5893000 |
0.3512000 |
0.5388000 |
0.5297000 |
0.4361000 |
36.57 |
70.0 |
29 |
449.46 |
4.93 |
48.28 |
0 |
48.28 |
0/1 |
| chr1 |
79383458 |
rs12569007 |
A |
T |
. |
PASS |
0.5431000 |
0.6974000 |
0.7044000 |
0.6213000 |
0.6636000 |
0.6362000 |
35.4 |
70.0 |
42 |
439.50 |
11.43 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
79383766 |
rs72675852 |
G |
T |
. |
PASS |
0.0371000 |
0.0303000 |
0.0000000 |
0.0736000 |
0.0143000 |
0.0315000 |
36.25 |
70.0 |
47 |
478.23 |
22.07 |
34.04 |
0 |
34.04 |
0/1 |
| chr1 |
79387242 |
rs3811440 |
C |
T |
. |
PASS |
0.0658000 |
0.1945000 |
0.2312000 |
0.3171000 |
0.2035000 |
0.1943000 |
34.82 |
70.0 |
17 |
351.82 |
7.49 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
79392756 |
rs12754818 |
C |
A |
. |
PASS |
0.4939000 |
0.6844000 |
0.7044000 |
0.6183000 |
0.6626000 |
0.6206000 |
37.0 |
70.0 |
48 |
779.62 |
5.07 |
47.92 |
0 |
47.92 |
0/1 |
| chr1 |
79401927 |
rs61770681 |
A |
G |
. |
PASS |
0.4939000 |
0.6844000 |
0.7044000 |
0.6193000 |
0.6626000 |
0.6208000 |
34.0 |
70.0 |
17 |
226.50 |
22.06 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
79403751 |
rs985277 |
T |
G |
. |
PASS |
0.4622000 |
0.6585000 |
0.7034000 |
0.5835000 |
0.6155000 |
0.5923000 |
37.0 |
70.0 |
15 |
252.39 |
5.00 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
79411888 |
rs723898 |
T |
C |
. |
PASS |
0.3533000 |
0.5865000 |
0.3552000 |
0.5368000 |
0.5266000 |
0.4567000 |
37.0 |
70.0 |
15 |
214.77 |
3.81 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
79520554 |
rs10874009 |
C |
T |
. |
PASS |
0.8684000 |
0.9899000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9637000 |
36.37 |
69.26 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
79520923 |
rs17131734 |
T |
C |
. |
PASS |
0.1369000 |
0.2522000 |
0.1548000 |
0.1740000 |
0.2883000 |
0.1935000 |
37.0 |
69.81 |
49 |
947.85 |
0.91 |
55.10 |
0 |
55.10 |
0/1 |
| chr1 |
79520949 |
rs6424628 |
G |
A |
. |
PASS |
0.0998000 |
0.2795000 |
0.3710000 |
0.3569000 |
0.3732000 |
0.2843000 |
36.52 |
69.88 |
58 |
825.21 |
8.55 |
43.10 |
0 |
43.10 |
0/1 |
| chr1 |
79622435 |
rs10782682 |
T |
C |
. |
PASS |
0.3714000 |
0.4914000 |
0.6101000 |
0.5209000 |
0.5337000 |
0.4978000 |
36.16 |
70.0 |
65 |
1000.00 |
2.29 |
66.15 |
0 |
66.15 |
0/1 |
| chr1 |
79986910 |
rs17453405 |
C |
A |
. |
PASS |
0.0711000 |
0.2622000 |
0.1845000 |
0.4493000 |
0.3108000 |
0.2432000 |
37.0 |
70.0 |
46 |
994.50 |
20.19 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
80286411 |
rs17425287 |
T |
C |
. |
PASS |
0.3941000 |
0.6095000 |
0.3145000 |
0.5815000 |
0.5153000 |
0.4692000 |
35.91 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
80629156 |
rs7544028 |
G |
C |
. |
PASS |
0.5310000 |
0.3890000 |
0.4831000 |
0.4046000 |
0.6421000 |
0.4980000 |
36.2 |
70.0 |
80 |
1000.00 |
1.67 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
81267525 |
rs1538258 |
A |
T |
. |
PASS |
0.4955000 |
0.5951000 |
0.6647000 |
0.4891000 |
0.5419000 |
0.5511000 |
36.45 |
70.0 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
81608126 |
rs72709955 |
C |
T |
. |
PASS |
0.0015000 |
0.0000000 |
0.0000000 |
0.0119000 |
0.0020000 |
0.0031949 |
37.0 |
70.0 |
15 |
340.08 |
26.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
81608182 |
rs1195688 |
T |
G |
. |
PASS |
0.4750000 |
0.4899000 |
0.3046000 |
0.4970000 |
0.4867000 |
0.4495000 |
35.67 |
69.26 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
81674838 |
rs72711655 |
A |
C |
. |
PASS |
0.2685000 |
0.0706000 |
0.0317000 |
0.0457000 |
0.0521000 |
0.1064000 |
37.0 |
70.0 |
38 |
266.70 |
20.00 |
26.32 |
0 |
26.32 |
0/1 |
| chr1 |
81892826 |
rs12121921 |
C |
T |
. |
PASS |
0.4622000 |
0.6254000 |
0.3502000 |
0.7266000 |
0.6053000 |
0.5433000 |
37.0 |
69.88 |
27 |
554.59 |
3.70 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
81892985 |
rs11163290 |
T |
C |
. |
PASS |
0.6959000 |
0.8948000 |
0.9345000 |
0.8290000 |
0.8855000 |
0.8353000 |
36.08 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
81928412 |
rs13375219 |
A |
C |
. |
PASS |
0.3411000 |
0.4986000 |
0.3085000 |
0.6223000 |
0.5419000 |
0.4521000 |
37.0 |
70.0 |
18 |
712.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
81967466 |
. |
T |
TCAGCAGCAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.92 |
69.81 |
50 |
1000.00 |
5.33 |
54.00 |
0 |
60.00 |
0/1 |
| chr1 |
82187434 |
rs72715729 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0060000 |
0.0000000 |
0.0011981 |
35.8 |
70.0 |
20 |
313.03 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
82188202 |
rs72715731 |
C |
G |
. |
PASS |
0.0053000 |
0.0375000 |
0.0010000 |
0.0258000 |
0.0532000 |
0.0224000 |
37.0 |
70.0 |
38 |
559.10 |
0.62 |
44.74 |
0 |
44.74 |
0/1 |
| chr1 |
82188756 |
rs72715733 |
G |
A |
. |
PASS |
0.0840000 |
0.0821000 |
0.0486000 |
0.1183000 |
0.1339000 |
0.0933000 |
37.0 |
70.0 |
14 |
301.32 |
1.59 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
82268100 |
rs12759035 |
C |
G |
. |
PASS |
0.0212000 |
0.0504000 |
0.0317000 |
0.1024000 |
0.2198000 |
0.0825000 |
36.57 |
70.0 |
53 |
961.41 |
1.89 |
52.83 |
0 |
52.83 |
0/1 |
| chr1 |
82268192 |
rs35363566 |
C |
G |
. |
PASS |
0.0182000 |
0.0490000 |
0.0317000 |
0.1024000 |
0.2198000 |
0.0815000 |
36.22 |
70.0 |
96 |
1000.00 |
6.61 |
47.92 |
0 |
47.92 |
0/1 |
| chr1 |
82268201 |
rs35594624 |
A |
G |
. |
PASS |
0.0182000 |
0.0490000 |
0.0317000 |
0.1024000 |
0.2198000 |
0.0815000 |
36.47 |
70.0 |
95 |
1000.00 |
7.95 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
82302600 |
rs12064537 |
T |
C |
. |
PASS |
0.3608000 |
0.2666000 |
0.0655000 |
0.4622000 |
0.4213000 |
0.3205000 |
37.0 |
70.0 |
22 |
235.47 |
29.55 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
82402364 |
rs3831111,rs142993868 |
TAATC |
T |
. |
PASS |
0.1997000 |
0.2161000 |
0.1657000 |
0.3569000 |
0.2812000 |
0.2426000 |
35.61 |
70.0 |
44 |
549.37 |
11.62 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
82421596 |
rs11163397 |
C |
T |
. |
PASS |
0.9803000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9940000 |
36.69 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
82431964 |
rs72719412 |
G |
A |
. |
PASS |
0.0008000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0003994 |
35.29 |
70.0 |
19 |
190.73 |
3.01 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
82437670 |
rs144957268 |
ATTTGT |
A |
. |
PASS |
0.2534000 |
0.3084000 |
0.1558000 |
0.3370000 |
0.1943000 |
0.2466000 |
37.0 |
70.0 |
13 |
249.99 |
7.69 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
82437682 |
rs41292976 |
G |
A |
. |
PASS |
0.3147000 |
0.3141000 |
0.1558000 |
0.3370000 |
0.1943000 |
0.2636000 |
37.0 |
70.0 |
12 |
265.57 |
16.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
82652634 |
rs10677614,rs67312208,rs35296122 |
T |
TAA |
. |
PASS |
0.4796000 |
0.5029000 |
0.5169000 |
0.5179000 |
0.5276000 |
0.5074000 |
35.5 |
70.0 |
34 |
800.06 |
11.76 |
41.18 |
0 |
70.59 |
0/1 |
| chr1 |
83597301 |
rs6664860 |
T |
C |
. |
PASS |
0.4138000 |
0.4856000 |
0.4980000 |
0.3439000 |
0.4233000 |
0.4285000 |
36.48 |
69.78 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
83855668 |
rs75994283 |
T |
A |
. |
PASS |
0.0484000 |
0.3545000 |
0.5238000 |
0.3569000 |
0.5082000 |
0.3383000 |
37.0 |
68.5 |
10 |
100.36 |
40.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
83855793 |
rs201053203 |
T |
C |
. |
PASS |
0.2511000 |
0.1643000 |
0.1508000 |
0.1928000 |
0.1462000 |
0.1867000 |
37.0 |
61.87 |
39 |
476.71 |
1.03 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
83956087 |
rs7516943 |
T |
C |
. |
PASS |
0.1702000 |
0.2925000 |
0.2847000 |
0.3489000 |
0.2986000 |
0.2712000 |
35.29 |
70.0 |
36 |
419.94 |
15.87 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
84295861 |
rs2179763 |
A |
G |
. |
PASS |
0.5416000 |
0.3847000 |
0.5089000 |
0.4155000 |
0.4908000 |
0.4780000 |
36.65 |
70.0 |
86 |
1000.00 |
9.44 |
39.53 |
0 |
39.53 |
0/1 |
| chr1 |
84335779 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
45 |
124.49 |
19.05 |
15.56 |
0 |
15.56 |
0/1 |
| chr1 |
84551736 |
rs12404263 |
G |
A |
. |
PASS |
0.2746000 |
0.3487000 |
0.2827000 |
0.4543000 |
0.2853000 |
0.3247000 |
36.43 |
70.0 |
34 |
730.36 |
2.52 |
61.76 |
0 |
61.76 |
0/1 |
| chr1 |
84611998 |
rs6576963 |
T |
C |
. |
PASS |
0.4213000 |
0.3862000 |
0.3839000 |
0.5388000 |
0.3681000 |
0.4221000 |
37.0 |
70.0 |
41 |
763.07 |
3.77 |
53.66 |
0 |
53.66 |
0/1 |
| chr1 |
84640691 |
rs582201 |
T |
G |
. |
PASS |
0.9259000 |
0.9467000 |
0.9355000 |
0.9950000 |
0.9683000 |
0.9529000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
84640834 |
rs12132002 |
T |
G |
. |
PASS |
0.1074000 |
0.2406000 |
0.3810000 |
0.3698000 |
0.2986000 |
0.2710000 |
35.5 |
70.0 |
13 |
246.40 |
13.46 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
84791239 |
rs315555 |
T |
C |
. |
PASS |
0.8767000 |
0.8242000 |
0.8562000 |
0.9175000 |
0.9018000 |
0.8784000 |
37.0 |
68.75 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
84918166 |
rs4907069 |
A |
G |
. |
PASS |
0.9100000 |
0.9841000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9738000 |
36.28 |
69.7 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
84944989 |
rs2292191 |
A |
G |
. |
PASS |
0.2005000 |
0.4625000 |
0.7331000 |
0.6571000 |
0.4806000 |
0.4904000 |
36.65 |
69.41 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
84946745 |
rs7413066 |
C |
T |
. |
PASS |
0.9584000 |
0.9971000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9884000 |
35.62 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85113203 |
rs2994949 |
T |
C |
. |
PASS |
0.6135000 |
0.8588000 |
0.7917000 |
0.8787000 |
0.7464000 |
0.7626000 |
37.0 |
69.38 |
62 |
1000.00 |
2.62 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
85113229 |
rs1057746 |
A |
G |
. |
PASS |
0.2458000 |
0.5346000 |
0.7034000 |
0.6521000 |
0.5174000 |
0.5126000 |
37.0 |
69.13 |
50 |
777.75 |
9.04 |
46.00 |
0 |
46.00 |
0/1 |
| chr1 |
85128262 |
rs2911563 |
A |
G |
. |
PASS |
0.6309000 |
0.6326000 |
0.7202000 |
0.7893000 |
0.6166000 |
0.6781000 |
36.14 |
68.57 |
29 |
453.02 |
19.21 |
48.28 |
0 |
48.28 |
0/1 |
| chr1 |
85128280 |
rs2994437 |
T |
C |
. |
PASS |
0.8026000 |
0.9078000 |
0.7937000 |
0.9533000 |
0.8364000 |
0.8522000 |
35.8 |
70.0 |
22 |
307.00 |
3.64 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
85136521 |
. |
TATAA |
T |
. |
PASS |
0.0008000 |
0.0029000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0011981 |
37.0 |
68.57 |
32 |
449.44 |
5.36 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
85289748 |
rs9729034 |
G |
A |
. |
PASS |
0.4145000 |
0.3905000 |
0.5298000 |
0.4284000 |
0.5020000 |
0.4543000 |
37.0 |
70.0 |
89 |
1000.00 |
8.63 |
42.70 |
0 |
42.70 |
0/1 |
| chr1 |
85331808 |
rs113879527,rs58203951,rs146269415 |
G |
GAGA |
. |
PASS |
0.9516000 |
0.7896000 |
0.5327000 |
0.7386000 |
0.6442000 |
0.7420000 |
36.29 |
70.0 |
26 |
519.99 |
0.96 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
85392324 |
rs6681025 |
C |
T |
. |
PASS |
0.1377000 |
0.2983000 |
0.3710000 |
0.3300000 |
0.2280000 |
0.2632000 |
37.0 |
70.0 |
55 |
720.93 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
85397286 |
rs34793286 |
G |
C |
. |
PASS |
0.0439000 |
0.2608000 |
0.3879000 |
0.3002000 |
0.3211000 |
0.2488000 |
37.0 |
70.0 |
22 |
398.41 |
19.70 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
85418307 |
rs677476 |
C |
G |
. |
PASS |
0.6067000 |
0.5504000 |
0.6607000 |
0.4901000 |
0.5256000 |
0.5705000 |
37.0 |
70.0 |
10 |
183.90 |
6.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
85422061 |
rs632545 |
C |
T |
. |
PASS |
0.5545000 |
0.5418000 |
0.6607000 |
0.4861000 |
0.5174000 |
0.5531000 |
36.2 |
70.0 |
29 |
494.79 |
17.01 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
85424182 |
rs673998 |
A |
G |
. |
PASS |
0.4493000 |
0.2968000 |
0.4018000 |
0.3250000 |
0.3272000 |
0.3698000 |
37.0 |
70.0 |
12 |
140.26 |
13.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
85462582 |
rs11161503 |
C |
G |
. |
PASS |
0.2496000 |
0.5029000 |
0.6300000 |
0.4662000 |
0.4918000 |
0.4521000 |
37.0 |
70.0 |
35 |
693.44 |
4.29 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
85488030 |
rs2028304 |
G |
A |
. |
PASS |
0.8298000 |
0.7522000 |
0.7331000 |
0.8400000 |
0.8016000 |
0.7961000 |
36.35 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85511057 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
67.78 |
25 |
246.65 |
35.56 |
36.00 |
1 |
36.00 |
0/1 |
| chr1 |
85511057 |
rs199625574 |
AAAC |
A |
. |
PASS |
0.0030000 |
0.0231000 |
0.0010000 |
0.0596000 |
0.0245000 |
0.0210000 |
35.67 |
67.78 |
31 |
246.65 |
39.43 |
29.03 |
1 |
29.03 |
0/1 |
| chr1 |
85511058 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
67.78 |
23 |
252.67 |
33.82 |
39.13 |
1 |
39.13 |
0/1 |
| chr1 |
85511059 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
67.78 |
23 |
252.67 |
33.82 |
39.13 |
1 |
39.13 |
0/1 |
| chr1 |
85547945 |
rs7534574 |
T |
C |
. |
PASS |
0.4349000 |
0.4986000 |
0.2738000 |
0.5378000 |
0.4663000 |
0.4381000 |
37.0 |
70.0 |
17 |
208.76 |
1.68 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
85551423 |
rs12130198 |
A |
G |
. |
PASS |
0.1611000 |
0.1643000 |
0.2401000 |
0.2008000 |
0.2577000 |
0.2043000 |
37.0 |
70.0 |
16 |
295.30 |
6.94 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
85551468 |
rs111823967,rs78237272 |
A |
ATCAGTTTTTCT |
. |
PASS |
0.5961000 |
0.5403000 |
0.4891000 |
0.6044000 |
0.5164000 |
0.5529000 |
37.0 |
70.0 |
32 |
373.64 |
13.46 |
40.62 |
0 |
40.62 |
0/1 |
| chr1 |
85559118 |
rs11304107 |
CT |
C |
. |
PASS |
0.6884000 |
0.6686000 |
0.5863000 |
0.6352000 |
0.5460000 |
0.6266000 |
35.27 |
70.0 |
22 |
835.86 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85560313 |
rs709765 |
T |
C |
. |
PASS |
0.6725000 |
0.6268000 |
0.4444000 |
0.5706000 |
0.5297000 |
0.5719000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85561546 |
rs709766 |
T |
C |
. |
PASS |
0.6702000 |
0.6268000 |
0.4375000 |
0.5716000 |
0.5286000 |
0.5699000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85573705 |
rs11427716 |
A |
AC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.94 |
70.0 |
33 |
1000.00 |
2.46 |
96.97 |
0 |
96.97 |
1/1 |
| chr1 |
85583162 |
rs6576749 |
C |
G |
. |
PASS |
0.5908000 |
0.6599000 |
0.5893000 |
0.5477000 |
0.6339000 |
0.5998000 |
36.03 |
70.0 |
88 |
1000.00 |
3.26 |
42.05 |
0 |
42.05 |
0/1 |
| chr1 |
85589939 |
rs11356964 |
GT |
G |
. |
PASS |
0.5575000 |
0.7464000 |
0.5794000 |
0.6918000 |
0.8149000 |
0.6653000 |
36.76 |
70.0 |
101 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85595645 |
rs1020770 |
C |
T |
. |
PASS |
0.3782000 |
0.6354000 |
0.5685000 |
0.6978000 |
0.8006000 |
0.5988000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85598527 |
rs36118758,rs5775826 |
TC |
T |
. |
PASS |
0.9365000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9824000 |
36.09 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85624549 |
rs709786 |
C |
T |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
36.16 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85624864 |
rs817412 |
G |
A |
. |
PASS |
0.9319000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9810000 |
35.73 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85647713 |
rs817444 |
T |
C |
. |
PASS |
0.9259000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9794000 |
35.29 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85648620 |
rs817443 |
C |
T |
. |
PASS |
0.9259000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9794000 |
36.18 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85648905 |
rs11161539 |
T |
C |
. |
PASS |
0.2443000 |
0.5202000 |
0.5397000 |
0.6421000 |
0.7168000 |
0.5142000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85725353 |
rs112918702 |
GCCGGAAA |
G |
. |
PASS |
0.4682000 |
0.3170000 |
0.3363000 |
0.4006000 |
0.4550000 |
0.4046000 |
36.36 |
70.0 |
137 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85741921 |
rs2735594 |
G |
C |
. |
PASS |
0.8442000 |
0.6873000 |
0.7173000 |
0.7913000 |
0.7638000 |
0.7706000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85742012 |
rs11576939 |
G |
C |
. |
PASS |
0.2663000 |
0.2032000 |
0.0744000 |
0.3111000 |
0.2679000 |
0.2282000 |
36.49 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
85787114 |
rs233116 |
A |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.73 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86046561 |
rs2297140 |
C |
A |
. |
PASS |
0.5893000 |
0.5375000 |
0.5784000 |
0.5278000 |
0.6820000 |
0.5857000 |
34.33 |
70.0 |
16 |
267.14 |
8.33 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
86146672 |
rs3767162 |
G |
A |
. |
PASS |
0.1551000 |
0.3674000 |
0.4395000 |
0.4513000 |
0.5767000 |
0.3836000 |
37.0 |
70.0 |
13 |
179.02 |
46.15 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
86167957 |
rs1764298 |
C |
T |
. |
PASS |
0.3442000 |
0.7133000 |
0.9157000 |
0.8400000 |
0.8395000 |
0.7067000 |
37.0 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86173298 |
rs1539444 |
C |
T |
. |
PASS |
0.3578000 |
0.5274000 |
0.5119000 |
0.5159000 |
0.3589000 |
0.4443000 |
36.14 |
70.0 |
44 |
407.86 |
5.19 |
31.82 |
0 |
31.82 |
0/1 |
| chr1 |
86210546 |
rs7547023 |
G |
A |
. |
PASS |
0.6823000 |
0.8170000 |
0.9306000 |
0.9692000 |
0.8783000 |
0.8468000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86246849 |
rs313722 |
A |
C |
. |
PASS |
0.5620000 |
0.7233000 |
0.7788000 |
0.8390000 |
0.7638000 |
0.7230000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86249911 |
rs313725 |
A |
G |
. |
PASS |
0.6278000 |
0.9006000 |
0.9444000 |
0.9642000 |
0.9325000 |
0.8564000 |
36.76 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86252025 |
rs12746325 |
A |
G |
. |
PASS |
0.1573000 |
0.2752000 |
0.0694000 |
0.4712000 |
0.2863000 |
0.2442000 |
35.0 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86289082 |
rs1842579 |
C |
T |
. |
PASS |
0.2201000 |
0.2478000 |
0.0685000 |
0.4235000 |
0.2628000 |
0.2426000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86313536 |
rs1962482 |
G |
T |
. |
PASS |
0.3495000 |
0.1354000 |
0.0069000 |
0.1262000 |
0.2106000 |
0.1789000 |
37.0 |
70.0 |
17 |
204.60 |
6.72 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
86340262 |
rs12136023 |
C |
A |
. |
PASS |
0.4743000 |
0.2637000 |
0.0367000 |
0.3787000 |
0.1871000 |
0.2817000 |
35.71 |
69.29 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86340880 |
rs1564515 |
A |
G |
. |
PASS |
0.4758000 |
0.2680000 |
0.0367000 |
0.3797000 |
0.1892000 |
0.2833000 |
36.08 |
68.46 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86361802 |
rs7541806 |
C |
G |
. |
PASS |
0.5832000 |
0.7795000 |
0.8036000 |
0.7008000 |
0.6697000 |
0.6953000 |
37.0 |
70.0 |
37 |
478.56 |
3.60 |
40.54 |
0 |
40.54 |
0/1 |
| chr1 |
86375654 |
rs1502657 |
C |
G |
. |
PASS |
0.5696000 |
0.7795000 |
0.8026000 |
0.7008000 |
0.6718000 |
0.6919000 |
35.29 |
70.0 |
75 |
578.78 |
1.90 |
28.00 |
0 |
28.00 |
0/1 |
| chr1 |
86453237 |
rs11799965 |
T |
G |
. |
PASS |
0.1755000 |
0.3847000 |
0.2212000 |
0.3002000 |
0.0777000 |
0.2196000 |
36.45 |
70.0 |
36 |
761.96 |
7.07 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
86453409 |
rs589698 |
C |
T |
. |
PASS |
0.2284000 |
0.1758000 |
0.1984000 |
0.2773000 |
0.2526000 |
0.2296000 |
37.0 |
70.0 |
12 |
98.49 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
86482958 |
rs17128726 |
T |
A |
. |
PASS |
0.1808000 |
0.0720000 |
0.4405000 |
0.0268000 |
0.1708000 |
0.1851000 |
35.0 |
70.0 |
13 |
162.86 |
7.69 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
86487914 |
rs11161721 |
C |
A |
. |
PASS |
0.2254000 |
0.3473000 |
0.2688000 |
0.2873000 |
0.2055000 |
0.2596000 |
36.57 |
70.0 |
61 |
937.34 |
8.78 |
45.90 |
0 |
45.90 |
0/1 |
| chr1 |
86487981 |
rs516213 |
G |
A |
. |
PASS |
0.9327000 |
0.7536000 |
0.8720000 |
0.6431000 |
0.6779000 |
0.7877000 |
36.03 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86487992 |
rs5775882 |
A |
AACAG |
. |
PASS |
0.9289000 |
0.7507000 |
0.8552000 |
0.6392000 |
0.6687000 |
0.7804000 |
36.46 |
70.0 |
32 |
1000.00 |
3.02 |
96.88 |
0 |
96.88 |
1/1 |
| chr1 |
86512536 |
rs60891279 |
C |
T |
. |
PASS |
0.1097000 |
0.2651000 |
0.2788000 |
0.1322000 |
0.1820000 |
0.1839000 |
36.61 |
70.0 |
73 |
1000.00 |
4.60 |
42.47 |
0 |
42.47 |
0/1 |
| chr1 |
86557967 |
rs11161732 |
G |
A |
. |
PASS |
0.3563000 |
0.4467000 |
0.3849000 |
0.3767000 |
0.3129000 |
0.3702000 |
36.08 |
70.0 |
30 |
408.23 |
21.03 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
86590915 |
rs2174767 |
G |
A |
. |
PASS |
0.8941000 |
0.9870000 |
0.9722000 |
0.9990000 |
1.0000000 |
0.9645000 |
36.36 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86590948 |
rs11161746 |
A |
G |
. |
PASS |
0.0794000 |
0.1614000 |
0.0605000 |
0.1650000 |
0.2536000 |
0.1382000 |
36.0 |
70.0 |
55 |
780.45 |
11.21 |
43.64 |
0 |
43.64 |
0/1 |
| chr1 |
86591837 |
rs11161747 |
G |
A |
. |
PASS |
0.5401000 |
0.7176000 |
0.6220000 |
0.7425000 |
0.6595000 |
0.6452000 |
36.5 |
70.0 |
53 |
798.48 |
4.25 |
45.28 |
0 |
45.28 |
0/1 |
| chr1 |
86621543 |
rs4656131 |
A |
T |
. |
PASS |
0.4478000 |
0.5677000 |
0.3542000 |
0.6352000 |
0.3763000 |
0.4692000 |
37.0 |
70.0 |
114 |
1000.00 |
3.25 |
58.77 |
0 |
58.77 |
0/1 |
| chr1 |
86621547 |
rs4656132 |
G |
T |
. |
PASS |
0.4478000 |
0.5677000 |
0.3542000 |
0.6352000 |
0.3763000 |
0.4692000 |
34.52 |
70.0 |
111 |
1000.00 |
2.92 |
56.76 |
0 |
56.76 |
0/1 |
| chr1 |
86621992 |
rs1999747 |
C |
A |
. |
PASS |
0.4607000 |
0.6686000 |
0.5506000 |
0.7018000 |
0.4315000 |
0.5503000 |
36.33 |
70.0 |
39 |
585.85 |
8.55 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
86818572 |
rs272496 |
T |
C |
. |
PASS |
0.7557000 |
0.6585000 |
0.8284000 |
0.6451000 |
0.7894000 |
0.7412000 |
36.08 |
70.0 |
23 |
429.31 |
16.72 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
86820267 |
rs1182098 |
C |
T |
. |
PASS |
0.7821000 |
0.6700000 |
0.8284000 |
0.6551000 |
0.8037000 |
0.7546000 |
37.0 |
69.33 |
47 |
1000.00 |
15.46 |
63.83 |
0 |
63.83 |
0/1 |
| chr1 |
86822231 |
rs385437 |
A |
G |
. |
PASS |
0.1104000 |
0.1167000 |
0.0327000 |
0.1710000 |
0.1840000 |
0.1222000 |
37.0 |
70.0 |
66 |
854.91 |
9.09 |
39.39 |
0 |
39.39 |
0/1 |
| chr1 |
86838158 |
rs421105 |
C |
T |
. |
PASS |
0.7821000 |
0.6700000 |
0.8284000 |
0.6551000 |
0.8037000 |
0.7546000 |
37.0 |
70.0 |
35 |
154.58 |
0.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
86847955 |
rs272516 |
G |
A |
. |
PASS |
0.5371000 |
0.3977000 |
0.2897000 |
0.3260000 |
0.3446000 |
0.3880000 |
37.0 |
70.0 |
35 |
279.88 |
5.71 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
86891005 |
rs1158506 |
C |
A |
. |
PASS |
0.4750000 |
0.5677000 |
0.5893000 |
0.6113000 |
0.5654000 |
0.5559000 |
37.0 |
70.0 |
15 |
294.17 |
8.89 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
86894241 |
rs72720125 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
52 |
897.04 |
3.85 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
86896706 |
rs3737673 |
C |
A |
. |
PASS |
0.1520000 |
0.3228000 |
0.1796000 |
0.3469000 |
0.2290000 |
0.2354000 |
35.74 |
70.0 |
31 |
639.70 |
1.36 |
61.29 |
0 |
61.29 |
0/1 |
| chr1 |
86897970 |
rs12407985 |
T |
A |
. |
PASS |
0.1520000 |
0.3228000 |
0.1796000 |
0.3479000 |
0.2290000 |
0.2356000 |
37.0 |
70.0 |
12 |
177.88 |
16.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
86897973 |
rs1334150 |
T |
C |
. |
PASS |
0.7799000 |
0.8069000 |
0.7351000 |
0.8728000 |
0.8753000 |
0.8119000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86900332 |
rs17449526 |
T |
C |
. |
PASS |
0.1513000 |
0.3228000 |
0.1796000 |
0.3449000 |
0.2290000 |
0.2348000 |
36.76 |
70.0 |
106 |
1000.00 |
1.96 |
48.11 |
0 |
48.11 |
0/1 |
| chr1 |
86900372 |
rs17409304 |
C |
G |
. |
PASS |
0.1513000 |
0.3228000 |
0.1796000 |
0.3449000 |
0.2290000 |
0.2348000 |
37.0 |
70.0 |
71 |
1000.00 |
1.52 |
52.11 |
0 |
52.11 |
0/1 |
| chr1 |
86900491 |
rs56408800 |
C |
T |
. |
PASS |
0.1513000 |
0.3228000 |
0.1776000 |
0.3439000 |
0.2331000 |
0.2350000 |
35.29 |
70.0 |
19 |
190.72 |
13.53 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
86909703 |
rs3820039 |
T |
C |
. |
PASS |
0.1377000 |
0.3040000 |
0.1319000 |
0.2952000 |
0.1483000 |
0.1933000 |
37.0 |
70.0 |
48 |
533.15 |
0.98 |
35.42 |
0 |
35.42 |
0/1 |
| chr1 |
86939130 |
rs2145412 |
C |
T |
. |
PASS |
0.6725000 |
0.9308000 |
0.9871000 |
0.9513000 |
0.9519000 |
0.8822000 |
34.95 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86939390 |
rs2180762 |
G |
A |
. |
PASS |
0.7784000 |
0.9582000 |
0.9871000 |
0.9543000 |
0.9550000 |
0.9151000 |
36.2 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86952324 |
rs2734705 |
A |
G |
. |
PASS |
0.9425000 |
0.9078000 |
0.8472000 |
0.8350000 |
0.8916000 |
0.8870000 |
36.71 |
70.0 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86954591 |
rs2075632 |
T |
C |
. |
PASS |
0.1362000 |
0.3530000 |
0.0942000 |
0.3787000 |
0.2658000 |
0.2318000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86959014 |
rs2753346 |
T |
C |
. |
PASS |
0.7292000 |
0.9020000 |
0.9107000 |
0.8648000 |
0.9192000 |
0.8540000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86959173 |
rs2791494 |
T |
C |
. |
PASS |
0.7753000 |
0.8761000 |
0.9058000 |
0.8241000 |
0.8998000 |
0.8496000 |
36.56 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86959796 |
rs1321689 |
C |
T |
. |
PASS |
0.7148000 |
0.6470000 |
0.6954000 |
0.7435000 |
0.7863000 |
0.7212000 |
37.0 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
86981315 |
rs2753368 |
C |
G |
. |
PASS |
0.4032000 |
0.6700000 |
0.3661000 |
0.6074000 |
0.4847000 |
0.4896000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87036746 |
rs772599 |
C |
A |
. |
PASS |
0.8759000 |
0.8617000 |
0.9395000 |
0.7525000 |
0.8896000 |
0.8646000 |
36.02 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87045896 |
rs4001061,rs77067122 |
TCCTACA |
T |
. |
PASS |
0.5363000 |
0.7925000 |
0.7282000 |
0.7207000 |
0.8415000 |
0.7071000 |
36.27 |
69.84 |
128 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87368917 |
rs573680 |
A |
G |
. |
PASS |
0.5038000 |
0.1614000 |
0.0357000 |
0.1958000 |
0.1534000 |
0.2318000 |
37.0 |
70.0 |
21 |
196.72 |
19.05 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
87369176 |
rs571015 |
C |
T |
. |
PASS |
0.5030000 |
0.1614000 |
0.0357000 |
0.1958000 |
0.1534000 |
0.2316000 |
35.29 |
70.0 |
13 |
208.78 |
37.36 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
87511177 |
rs4656138 |
C |
T |
. |
PASS |
0.4100000 |
0.8213000 |
0.9643000 |
0.7873000 |
0.8354000 |
0.7374000 |
36.37 |
70.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87512392 |
rs12756724 |
T |
C |
. |
PASS |
0.5530000 |
0.8473000 |
0.9653000 |
0.8151000 |
0.8804000 |
0.7933000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87549858 |
rs2798675 |
A |
G |
. |
PASS |
0.8555000 |
0.9467000 |
0.9940000 |
0.9513000 |
0.9673000 |
0.9371000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87563668 |
rs1199677 |
G |
A |
. |
PASS |
0.9289000 |
0.9697000 |
0.9950000 |
0.9781000 |
0.9755000 |
0.9669000 |
35.86 |
69.52 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87570398 |
rs1621247 |
G |
A |
. |
PASS |
0.3079000 |
0.8084000 |
0.9653000 |
0.7843000 |
0.8333000 |
0.7079000 |
36.49 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87699558 |
rs7546843 |
A |
G |
. |
PASS |
0.6369000 |
0.5130000 |
0.6865000 |
0.4672000 |
0.5542000 |
0.5795000 |
36.68 |
70.0 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87699576 |
rs10430050 |
T |
A |
. |
PASS |
0.4894000 |
0.3184000 |
0.2540000 |
0.3708000 |
0.3988000 |
0.3768000 |
36.69 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87716226 |
rs11161953 |
T |
A |
. |
PASS |
0.1278000 |
0.1354000 |
0.2143000 |
0.1809000 |
0.1984000 |
0.1707000 |
35.86 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
87757594 |
rs57115619 |
T |
TACAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
10 |
281.91 |
5.00 |
80.00 |
0 |
90.00 |
1/1 |
| chr1 |
88294293 |
rs2491285 |
C |
T |
. |
PASS |
0.5166000 |
0.5663000 |
0.6389000 |
0.6352000 |
0.4785000 |
0.5645000 |
36.45 |
70.0 |
41 |
751.06 |
7.32 |
53.66 |
0 |
53.66 |
0/1 |
| chr1 |
88603134 |
rs1932760 |
T |
G |
. |
PASS |
0.1097000 |
0.1167000 |
0.4395000 |
0.0656000 |
0.1524000 |
0.1765000 |
36.43 |
70.0 |
43 |
699.13 |
7.09 |
48.84 |
0 |
48.84 |
0/1 |
| chr1 |
88971661 |
rs11402045 |
T |
TC |
. |
PASS |
0.4319000 |
0.5591000 |
0.5198000 |
0.4423000 |
0.3364000 |
0.4507000 |
36.23 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89123061 |
rs7556616 |
T |
G |
. |
PASS |
0.8933000 |
0.9870000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9698000 |
36.1 |
69.5 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89225976 |
rs430600 |
T |
C |
. |
PASS |
0.9304000 |
0.5807000 |
0.6498000 |
0.6561000 |
0.8292000 |
0.7506000 |
37.0 |
70.0 |
38 |
521.48 |
5.26 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
89237078 |
rs9287139 |
A |
G |
. |
PASS |
0.1974000 |
0.0245000 |
0.0000000 |
0.0348000 |
0.0133000 |
0.0651000 |
35.0 |
70.0 |
13 |
167.01 |
28.21 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
89237556 |
rs9651072 |
C |
T |
. |
PASS |
0.3593000 |
0.0490000 |
0.0337000 |
0.0447000 |
0.0798000 |
0.1330000 |
37.0 |
70.0 |
52 |
938.81 |
10.26 |
51.92 |
0 |
51.92 |
0/1 |
| chr1 |
89272962 |
rs11808481 |
T |
G |
. |
PASS |
0.0855000 |
0.0144000 |
0.0000000 |
0.0338000 |
0.0133000 |
0.0339000 |
34.0 |
70.0 |
34 |
171.20 |
51.47 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
89273152 |
rs11809597 |
G |
T |
. |
PASS |
0.1974000 |
0.0245000 |
0.0000000 |
0.0348000 |
0.0133000 |
0.0651000 |
35.91 |
70.0 |
37 |
746.94 |
0.74 |
59.46 |
0 |
59.46 |
0/1 |
| chr1 |
89273287 |
rs6671949 |
G |
A |
. |
PASS |
0.1974000 |
0.0245000 |
0.0000000 |
0.0348000 |
0.0133000 |
0.0651000 |
35.22 |
70.0 |
64 |
854.67 |
7.99 |
42.19 |
0 |
42.19 |
0/1 |
| chr1 |
89319082 |
rs60992421 |
C |
T |
. |
PASS |
0.3442000 |
0.0346000 |
0.0000000 |
0.0358000 |
0.0133000 |
0.1054000 |
36.5 |
70.0 |
29 |
870.72 |
6.03 |
82.76 |
0 |
82.76 |
0/1 |
| chr1 |
89322982 |
rs2794318 |
G |
A |
. |
PASS |
0.9493000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9860000 |
35.88 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89367758 |
rs56218332 |
T |
C |
. |
PASS |
0.0023000 |
0.0000000 |
0.0000000 |
0.0070000 |
0.0010000 |
0.0021965 |
37.0 |
69.29 |
21 |
489.10 |
9.52 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
89426902 |
rs3738055 |
G |
A |
. |
PASS |
0.2307000 |
0.5043000 |
0.4633000 |
0.4771000 |
0.2536000 |
0.3694000 |
36.36 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89449278 |
rs201168911 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
67.35 |
148 |
333.46 |
14.59 |
13.51 |
0 |
13.51 |
0/1 |
| chr1 |
89449298 |
rs111779380 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
67.59 |
154 |
615.65 |
9.43 |
17.53 |
0 |
17.53 |
0/1 |
| chr1 |
89449390 |
rs112636230 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
68.79 |
127 |
366.90 |
3.98 |
14.96 |
0 |
14.96 |
0/1 |
| chr1 |
89449399 |
rs77567101 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.37 |
124 |
387.94 |
1.27 |
15.32 |
0 |
15.32 |
0/1 |
| chr1 |
89449434 |
rs2893084 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
68.14 |
109 |
200.21 |
16.25 |
12.84 |
0 |
12.84 |
0/1 |
| chr1 |
89449483 |
rs74100106 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.22 |
63 |
149.70 |
19.05 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
89474818 |
rs17433780 |
A |
G |
. |
PASS |
0.2587000 |
0.2637000 |
0.2113000 |
0.3201000 |
0.2485000 |
0.2602000 |
37.0 |
70.0 |
28 |
426.27 |
1.65 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
89475135 |
rs10493821 |
C |
T |
. |
PASS |
0.0439000 |
0.2421000 |
0.2034000 |
0.3201000 |
0.2474000 |
0.1987000 |
36.67 |
68.86 |
64 |
1000.00 |
1.04 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
89475230 |
rs4142706 |
T |
G |
. |
PASS |
0.6021000 |
0.5648000 |
0.5962000 |
0.4354000 |
0.4663000 |
0.5357000 |
37.0 |
69.86 |
13 |
216.64 |
2.20 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
89478854 |
rs4656076 |
C |
G |
. |
PASS |
0.2534000 |
0.5576000 |
0.5268000 |
0.7604000 |
0.7393000 |
0.5473000 |
36.18 |
69.89 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89479063 |
rs4656077 |
G |
A |
. |
PASS |
0.1793000 |
0.2925000 |
0.3075000 |
0.4404000 |
0.4888000 |
0.3337000 |
36.57 |
70.0 |
75 |
899.34 |
4.10 |
37.33 |
0 |
37.33 |
0/1 |
| chr1 |
89479074 |
rs4656078 |
C |
T |
. |
PASS |
0.1793000 |
0.2925000 |
0.3075000 |
0.4404000 |
0.4898000 |
0.3339000 |
37.0 |
70.0 |
71 |
1000.00 |
0.09 |
42.25 |
0 |
42.25 |
0/1 |
| chr1 |
89479758 |
rs3795543 |
T |
C |
. |
PASS |
0.6165000 |
0.5692000 |
0.5188000 |
0.7614000 |
0.7393000 |
0.6434000 |
36.5 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89520329 |
rs66614512,rs72054220 |
GAAAAAC |
G |
. |
PASS |
0.2239000 |
0.3271000 |
0.3810000 |
0.4940000 |
0.5358000 |
0.3850000 |
35.71 |
69.14 |
30 |
312.14 |
16.19 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
89520574 |
rs10922554 |
C |
A |
. |
PASS |
0.7958000 |
0.6153000 |
0.5585000 |
0.7694000 |
0.8016000 |
0.7189000 |
36.14 |
69.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89521841 |
rs1048443 |
G |
C |
. |
PASS |
0.5749000 |
0.3055000 |
0.2014000 |
0.3022000 |
0.3098000 |
0.3558000 |
36.75 |
66.33 |
107 |
1000.00 |
1.36 |
44.86 |
0 |
44.86 |
0/1 |
| chr1 |
89522512 |
rs4376712 |
C |
T |
. |
PASS |
0.2005000 |
0.3040000 |
0.3581000 |
0.4632000 |
0.4928000 |
0.3564000 |
37.0 |
69.83 |
16 |
169.99 |
20.83 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
89522646 |
rs1048425 |
G |
C |
. |
PASS |
0.7958000 |
0.6138000 |
0.5595000 |
0.7654000 |
0.8027000 |
0.7183000 |
36.61 |
69.01 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89523927 |
rs60070945 |
C |
T |
. |
PASS |
0.2496000 |
0.2839000 |
0.1200000 |
0.2992000 |
0.3047000 |
0.2490000 |
37.0 |
70.0 |
36 |
569.27 |
14.71 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
89525812 |
rs6701673 |
C |
G |
. |
PASS |
0.5227000 |
0.3026000 |
0.2014000 |
0.3012000 |
0.3098000 |
0.3415000 |
35.96 |
69.87 |
49 |
752.59 |
0.71 |
46.94 |
0 |
46.94 |
0/1 |
| chr1 |
89525820 |
rs61798936 |
C |
T |
. |
PASS |
0.2890000 |
0.2853000 |
0.1220000 |
0.2992000 |
0.3047000 |
0.2600000 |
36.59 |
69.79 |
59 |
989.27 |
5.61 |
49.15 |
0 |
49.15 |
0/1 |
| chr1 |
89569973 |
rs7513609 |
G |
C |
. |
PASS |
0.4924000 |
0.6816000 |
0.7718000 |
0.6441000 |
0.6401000 |
0.6342000 |
37.0 |
69.89 |
37 |
603.88 |
2.70 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
89574026 |
rs1329119 |
G |
A |
. |
PASS |
0.8011000 |
0.7190000 |
0.7847000 |
0.6750000 |
0.6851000 |
0.7384000 |
35.91 |
70.0 |
18 |
360.82 |
10.10 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
89579941 |
rs2230338 |
T |
C |
. |
PASS |
0.4614000 |
0.6801000 |
0.7758000 |
0.6441000 |
0.6421000 |
0.6270000 |
36.48 |
69.09 |
108 |
1000.00 |
4.43 |
42.59 |
0 |
42.59 |
0/1 |
| chr1 |
89582690 |
rs1803632 |
G |
C |
. |
PASS |
0.4622000 |
0.6801000 |
0.7758000 |
0.6431000 |
0.6421000 |
0.6270000 |
37.0 |
70.0 |
35 |
359.29 |
24.76 |
34.29 |
0 |
34.29 |
0/1 |
| chr1 |
89597755 |
rs942442 |
T |
C |
. |
PASS |
0.4697000 |
0.6787000 |
0.7728000 |
0.6451000 |
0.6431000 |
0.6288000 |
37.0 |
70.0 |
15 |
89.46 |
3.33 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
89615979 |
rs586609 |
C |
T |
. |
PASS |
0.7254000 |
0.7017000 |
0.7748000 |
0.6461000 |
0.6524000 |
0.7019000 |
35.11 |
68.95 |
41 |
601.73 |
1.28 |
46.34 |
0 |
46.34 |
0/1 |
| chr1 |
89637578 |
rs676913 |
G |
A |
. |
PASS |
0.7776000 |
0.7046000 |
0.7718000 |
0.6431000 |
0.6513000 |
0.7147000 |
36.49 |
70.0 |
89 |
1000.00 |
6.22 |
52.81 |
0 |
52.81 |
0/1 |
| chr1 |
89650850 |
rs623134 |
A |
T |
. |
PASS |
0.2685000 |
0.3271000 |
0.3998000 |
0.4901000 |
0.5082000 |
0.3944000 |
37.0 |
70.0 |
21 |
317.87 |
6.67 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
89660991 |
rs75750014 |
C |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
35.8 |
70.0 |
52 |
212.56 |
16.15 |
19.23 |
0 |
19.23 |
0/1 |
| chr1 |
89730723 |
rs9628688 |
C |
T |
. |
PASS |
0.3336000 |
0.3718000 |
0.3234000 |
0.5746000 |
0.5429000 |
0.4261000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89731959 |
rs12729209 |
G |
A |
. |
PASS |
0.3041000 |
0.3703000 |
0.3115000 |
0.5736000 |
0.5419000 |
0.4153000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89733273 |
rs6690597 |
T |
C |
. |
PASS |
0.4486000 |
0.3804000 |
0.3264000 |
0.5736000 |
0.5429000 |
0.4581000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89755671 |
rs623771 |
T |
A |
. |
PASS |
0.8192000 |
0.7406000 |
0.4881000 |
0.6700000 |
0.4468000 |
0.6390000 |
36.25 |
70.0 |
35 |
514.35 |
0.71 |
45.71 |
0 |
45.71 |
0/1 |
| chr1 |
89845926 |
rs11361992,rs67367078 |
GT |
G |
. |
PASS |
0.9228000 |
0.9107000 |
0.7272000 |
0.8897000 |
0.8517000 |
0.8612000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89847372 |
rs4658359 |
G |
T |
. |
PASS |
0.9092000 |
0.8415000 |
0.7262000 |
0.7465000 |
0.7843000 |
0.8059000 |
36.79 |
69.83 |
115 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89847411 |
rs4658360 |
C |
T |
. |
PASS |
0.9092000 |
0.8415000 |
0.7262000 |
0.7465000 |
0.7843000 |
0.8059000 |
35.36 |
69.74 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89847444 |
rs4658146 |
A |
G |
. |
PASS |
0.9100000 |
0.8429000 |
0.7252000 |
0.7485000 |
0.7843000 |
0.8065000 |
36.6 |
69.07 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89849201 |
rs928652 |
C |
G |
. |
PASS |
0.9160000 |
0.9193000 |
0.7272000 |
0.8897000 |
0.8517000 |
0.8606000 |
35.91 |
70.0 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89849350 |
rs928653 |
G |
A |
. |
PASS |
0.9160000 |
0.9193000 |
0.7272000 |
0.8897000 |
0.8517000 |
0.8606000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89849742 |
rs959460 |
A |
T |
. |
PASS |
0.9160000 |
0.9193000 |
0.7272000 |
0.8897000 |
0.8517000 |
0.8606000 |
35.47 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89851100 |
. |
G |
GTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.4 |
70.0 |
14 |
463.57 |
14.29 |
35.71 |
0 |
92.86 |
0/1 |
| chr1 |
89851100 |
rs371623293,rs373140356,rs369061637,rs370034390 |
G |
GT |
. |
PASS |
0.6422000 |
0.6542000 |
0.5536000 |
0.6511000 |
0.6022000 |
0.6200000 |
33.73 |
70.0 |
14 |
463.57 |
10.71 |
57.14 |
0 |
92.86 |
0/1 |
| chr1 |
89885854 |
rs6673154 |
G |
A |
. |
PASS |
0.9213000 |
0.9236000 |
0.7282000 |
0.8887000 |
0.8517000 |
0.8626000 |
36.14 |
68.91 |
57 |
1000.00 |
1.75 |
98.25 |
0 |
98.25 |
1/1 |
| chr1 |
89886714 |
rs6428538 |
A |
G |
. |
PASS |
0.9213000 |
0.9236000 |
0.7282000 |
0.8887000 |
0.8517000 |
0.8626000 |
37.0 |
69.54 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89886796 |
rs6428539 |
G |
A |
. |
PASS |
0.9213000 |
0.9236000 |
0.7282000 |
0.8887000 |
0.8517000 |
0.8626000 |
36.54 |
68.96 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89887094 |
rs6665989 |
A |
C |
. |
PASS |
0.9213000 |
0.9236000 |
0.7282000 |
0.8887000 |
0.8517000 |
0.8626000 |
36.5 |
70.0 |
24 |
950.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89888371 |
rs6428540 |
A |
G |
. |
PASS |
0.9213000 |
0.9236000 |
0.7262000 |
0.8887000 |
0.8517000 |
0.8622000 |
37.0 |
69.38 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
89888530 |
rs4261099 |
C |
T |
. |
PASS |
0.9206000 |
0.9236000 |
0.7282000 |
0.8887000 |
0.8517000 |
0.8624000 |
36.84 |
64.57 |
81 |
1000.00 |
0.45 |
95.06 |
0 |
95.06 |
1/1 |
| chr1 |
89888552 |
rs4282800 |
T |
A |
. |
PASS |
0.9191000 |
0.9236000 |
0.7282000 |
0.8887000 |
0.8517000 |
0.8620000 |
36.66 |
65.11 |
76 |
1000.00 |
1.59 |
93.42 |
0 |
93.42 |
1/1 |
| chr1 |
89888585 |
rs4415545 |
C |
G |
. |
PASS |
0.9213000 |
0.9236000 |
0.7282000 |
0.8887000 |
0.8517000 |
0.8626000 |
36.27 |
66.48 |
67 |
1000.00 |
1.54 |
98.51 |
0 |
98.51 |
1/1 |
| chr1 |
89888588 |
rs4506445 |
G |
T |
. |
PASS |
0.9213000 |
0.9236000 |
0.7282000 |
0.8887000 |
0.8517000 |
0.8626000 |
36.65 |
66.74 |
70 |
1000.00 |
0.00 |
97.14 |
0 |
97.14 |
1/1 |
| chr1 |
89935101 |
rs6692501 |
A |
G |
. |
PASS |
0.5582000 |
0.6513000 |
0.5546000 |
0.6153000 |
0.5256000 |
0.5755000 |
37.0 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
90178743 |
rs474536 |
A |
G |
. |
PASS |
0.9523000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9860000 |
36.5 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
90282382 |
rs3033163,rs112014894 |
G |
GCCCCT |
. |
PASS |
0.6702000 |
0.5274000 |
0.6151000 |
0.4006000 |
0.3415000 |
0.5210000 |
36.36 |
70.0 |
47 |
534.34 |
6.38 |
38.30 |
0 |
38.30 |
0/1 |
| chr1 |
90459744 |
rs2703984 |
A |
G |
. |
PASS |
0.9274000 |
0.9841000 |
0.9732000 |
0.9692000 |
0.9642000 |
0.9601000 |
36.51 |
69.96 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
90486412 |
rs2816881 |
T |
G |
. |
PASS |
0.6626000 |
0.7205000 |
0.8909000 |
0.5736000 |
0.6339000 |
0.6931000 |
35.86 |
70.0 |
54 |
654.00 |
1.06 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
90493026 |
rs10922744 |
G |
A |
. |
PASS |
0.4667000 |
0.7032000 |
0.8899000 |
0.5706000 |
0.6022000 |
0.6320000 |
36.43 |
70.0 |
84 |
1000.00 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
90601007 |
rs6662919 |
A |
G |
. |
PASS |
0.2579000 |
0.2363000 |
0.0565000 |
0.3509000 |
0.2137000 |
0.2244000 |
37.0 |
70.0 |
15 |
256.55 |
1.67 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
90601132 |
rs4466641 |
A |
T |
. |
PASS |
0.5197000 |
0.6095000 |
0.3294000 |
0.6501000 |
0.4898000 |
0.5142000 |
36.49 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91280217 |
. |
AAC |
ACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.78 |
70.0 |
28 |
1000.00 |
2.65 |
96.43 |
0 |
96.43 |
1/1 |
| chr1 |
91280290 |
rs2030860 |
T |
A |
. |
PASS |
0.0794000 |
0.4625000 |
0.3294000 |
0.5487000 |
0.4560000 |
0.3506000 |
36.62 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91359217 |
rs1188913 |
A |
G |
. |
PASS |
1.0000000 |
0.9957000 |
1.0000000 |
0.9881000 |
0.9969000 |
0.9964000 |
37.0 |
68.72 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91447985 |
rs358691 |
C |
T |
. |
PASS |
0.9977000 |
0.9380000 |
1.0000000 |
0.8936000 |
0.9233000 |
0.9545000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91605491 |
rs347004 |
G |
A |
. |
PASS |
0.5454000 |
0.4914000 |
0.5466000 |
0.5706000 |
0.6708000 |
0.5677000 |
36.69 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91727781 |
rs580070 |
C |
G |
. |
PASS |
0.1392000 |
0.1427000 |
0.0050000 |
0.2058000 |
0.1155000 |
0.1214000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91728053 |
rs585898 |
G |
A |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
36.21 |
69.67 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91728202 |
rs555432 |
T |
C |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91739208 |
rs281964 |
C |
T |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91739414 |
rs281963 |
G |
A |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91781304 |
rs281991 |
T |
C |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91781644 |
rs11589490 |
C |
G |
. |
PASS |
0.1233000 |
0.1571000 |
0.0050000 |
0.2346000 |
0.1155000 |
0.1250000 |
36.4 |
70.0 |
20 |
783.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91782031 |
rs11584478 |
T |
C |
. |
PASS |
0.1233000 |
0.1571000 |
0.0050000 |
0.2346000 |
0.1155000 |
0.1250000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91784887 |
rs10493845 |
G |
A |
. |
PASS |
0.2481000 |
0.2781000 |
0.1756000 |
0.3072000 |
0.1810000 |
0.2364000 |
37.0 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91793877 |
rs281972 |
T |
C |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
37.0 |
69.41 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91841301 |
rs282036 |
T |
C |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91851253 |
rs282026 |
T |
C |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
36.88 |
69.79 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91859795 |
rs282009 |
T |
C |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
37.0 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91859801 |
rs11165778 |
A |
G |
. |
PASS |
0.1649000 |
0.1585000 |
0.0050000 |
0.2356000 |
0.1176000 |
0.1368000 |
35.7 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91923764 |
rs35310771 |
T |
C |
. |
PASS |
0.5144000 |
0.4251000 |
0.3760000 |
0.4245000 |
0.4151000 |
0.4367000 |
36.82 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91973557 |
rs553606 |
T |
G |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
34.82 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91980447 |
rs483532 |
A |
G |
. |
PASS |
0.7837000 |
0.7824000 |
0.7579000 |
0.7942000 |
0.7249000 |
0.7690000 |
37.0 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
91989572 |
rs488126 |
T |
G |
. |
PASS |
0.9569000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9884000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92108899 |
rs2493202 |
C |
T |
. |
PASS |
0.6959000 |
0.8660000 |
0.9643000 |
0.7157000 |
0.9192000 |
0.8211000 |
35.67 |
70.0 |
31 |
602.08 |
5.02 |
58.06 |
0 |
58.06 |
0/1 |
| chr1 |
92174260 |
rs284878 |
A |
G |
. |
PASS |
0.9418000 |
0.9712000 |
0.7351000 |
0.9433000 |
0.9530000 |
0.9067000 |
35.83 |
70.0 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92184814 |
rs7524066 |
G |
T |
. |
PASS |
0.4145000 |
0.1599000 |
0.0625000 |
0.2883000 |
0.1288000 |
0.2272000 |
36.29 |
70.0 |
33 |
562.14 |
13.90 |
51.52 |
0 |
51.52 |
0/1 |
| chr1 |
92185657 |
rs1805112 |
C |
T |
. |
PASS |
0.2814000 |
0.2824000 |
0.5308000 |
0.4592000 |
0.4796000 |
0.4062000 |
36.72 |
70.0 |
93 |
1000.00 |
12.00 |
46.24 |
0 |
46.24 |
0/1 |
| chr1 |
92200593 |
rs11165376 |
A |
G |
. |
PASS |
0.4077000 |
0.6700000 |
0.5784000 |
0.6978000 |
0.8170000 |
0.6166000 |
37.0 |
70.0 |
24 |
521.85 |
8.33 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
92200597 |
rs12124904 |
G |
A |
. |
PASS |
0.5537000 |
0.3213000 |
0.4216000 |
0.3022000 |
0.1830000 |
0.3720000 |
35.0 |
70.0 |
20 |
145.94 |
26.67 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
92200627 |
rs10874913 |
T |
C |
. |
PASS |
0.6082000 |
0.9640000 |
0.9960000 |
0.9990000 |
1.0000000 |
0.8906000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92224347 |
rs11165441 |
G |
A |
. |
PASS |
0.1377000 |
0.1671000 |
0.2907000 |
0.1352000 |
0.0450000 |
0.1540000 |
37.0 |
70.0 |
15 |
256.54 |
8.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
92262874 |
rs2810904 |
T |
C |
. |
PASS |
0.7761000 |
0.7176000 |
0.7748000 |
0.6322000 |
0.6554000 |
0.7153000 |
36.22 |
69.57 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92281585 |
rs10783036 |
A |
T |
. |
PASS |
0.5265000 |
0.5663000 |
0.4226000 |
0.5417000 |
0.5706000 |
0.5228000 |
35.94 |
70.0 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92281635 |
rs10783037 |
T |
C |
. |
PASS |
0.5272000 |
0.5663000 |
0.4226000 |
0.5417000 |
0.5706000 |
0.5230000 |
36.74 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92428495 |
rs10783071 |
C |
A |
. |
PASS |
0.6551000 |
0.8415000 |
0.6141000 |
0.9235000 |
0.8057000 |
0.7560000 |
36.16 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92445257 |
rs3088232 |
C |
G |
. |
PASS |
0.0242000 |
0.2392000 |
0.0278000 |
0.2167000 |
0.2137000 |
0.1304000 |
37.0 |
70.0 |
57 |
794.30 |
0.44 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
92446398 |
rs2303967 |
T |
A |
. |
PASS |
0.4970000 |
0.7291000 |
0.6081000 |
0.7952000 |
0.7536000 |
0.6615000 |
37.0 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92446961 |
rs35241748,rs148496128 |
T |
TTGTA |
. |
PASS |
0.1271000 |
0.2493000 |
0.0288000 |
0.2237000 |
0.2096000 |
0.1597000 |
36.83 |
70.0 |
60 |
1000.00 |
10.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
92447004 |
rs10875104 |
A |
G |
. |
PASS |
0.6051000 |
0.7781000 |
0.6111000 |
0.8459000 |
0.7945000 |
0.7157000 |
35.83 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92457843 |
rs10747493 |
C |
T |
. |
PASS |
0.5908000 |
0.7738000 |
0.6081000 |
0.8429000 |
0.7945000 |
0.7101000 |
36.04 |
70.0 |
25 |
984.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92509766 |
rs1023039 |
A |
G |
. |
PASS |
0.6967000 |
0.5231000 |
0.4435000 |
0.4414000 |
0.4632000 |
0.5248000 |
36.71 |
70.0 |
66 |
1000.00 |
0.00 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
92509854 |
rs1023038 |
C |
T |
. |
PASS |
0.1725000 |
0.2622000 |
0.0238000 |
0.2336000 |
0.2055000 |
0.1737000 |
36.33 |
70.0 |
37 |
596.03 |
14.41 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
92540650 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.6 |
111 |
464.71 |
7.30 |
18.02 |
0 |
18.02 |
0/1 |
| chr1 |
92540686 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.81 |
135 |
643.08 |
17.61 |
19.26 |
0 |
19.26 |
0/1 |
| chr1 |
92568263 |
rs527412 |
A |
G |
. |
PASS |
0.7814000 |
0.6628000 |
0.9732000 |
0.6561000 |
0.7812000 |
0.7784000 |
37.0 |
70.0 |
23 |
232.47 |
19.57 |
34.78 |
0 |
34.78 |
0/1 |
| chr1 |
92573670 |
rs11166163 |
G |
A |
. |
PASS |
0.0514000 |
0.2853000 |
0.1548000 |
0.2942000 |
0.3170000 |
0.2053000 |
37.0 |
70.0 |
10 |
146.28 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
92591916 |
rs3851272 |
G |
A |
. |
PASS |
0.6490000 |
0.6412000 |
0.9692000 |
0.6282000 |
0.7403000 |
0.7260000 |
35.8 |
70.0 |
16 |
325.06 |
5.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
92592063 |
rs35716168 |
CT |
CGTA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
15 |
288.74 |
4.44 |
60.00 |
1 |
60.00 |
0/1 |
| chr1 |
92592064 |
rs201384700 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
70.0 |
13 |
329.95 |
3.08 |
76.92 |
1 |
76.92 |
0/1 |
| chr1 |
92646021 |
rs1483022 |
G |
A |
. |
PASS |
0.6059000 |
0.6066000 |
0.9732000 |
0.6223000 |
0.7474000 |
0.7109000 |
36.37 |
70.0 |
86 |
1000.00 |
1.10 |
44.19 |
0 |
44.19 |
0/1 |
| chr1 |
92647223 |
rs560389 |
A |
G |
. |
PASS |
0.9713000 |
0.6614000 |
0.9752000 |
0.6779000 |
0.7720000 |
0.8313000 |
35.0 |
70.0 |
27 |
363.49 |
5.56 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
92647532 |
rs565156 |
C |
A |
. |
PASS |
0.9992000 |
0.9899000 |
1.0000000 |
0.9861000 |
1.0000000 |
0.9956000 |
35.54 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92711067 |
rs3131827 |
A |
T |
. |
PASS |
0.4766000 |
0.4885000 |
0.9732000 |
0.4553000 |
0.7168000 |
0.6208000 |
37.0 |
70.0 |
12 |
261.42 |
25.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
92712266 |
rs974924 |
C |
T |
. |
PASS |
0.9871000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9964000 |
36.08 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92712598 |
rs35752451 |
GAA |
G |
. |
PASS |
0.4705000 |
0.4870000 |
0.9732000 |
0.4553000 |
0.7157000 |
0.6188000 |
35.96 |
70.0 |
46 |
729.48 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
92735359 |
rs1487540 |
T |
C |
. |
PASS |
0.4720000 |
0.4885000 |
0.9732000 |
0.4553000 |
0.7178000 |
0.6198000 |
36.0 |
70.0 |
13 |
418.68 |
10.26 |
92.31 |
0 |
92.31 |
0/1 |
| chr1 |
92755943 |
rs3103178 |
G |
A |
. |
PASS |
0.8480000 |
0.5389000 |
0.9732000 |
0.4712000 |
0.7290000 |
0.7314000 |
37.0 |
70.0 |
10 |
62.74 |
20.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
92765848 |
rs1542685 |
A |
T |
. |
PASS |
0.4720000 |
0.4885000 |
0.9732000 |
0.4553000 |
0.7168000 |
0.6196000 |
37.0 |
70.0 |
48 |
737.86 |
19.70 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
92799151 |
rs1487537 |
C |
T |
. |
PASS |
0.9773000 |
0.8876000 |
0.9980000 |
0.8062000 |
0.9622000 |
0.9317000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92852504 |
rs10747411 |
A |
G |
. |
PASS |
0.9766000 |
0.8876000 |
0.9980000 |
0.8062000 |
0.9622000 |
0.9315000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92944314 |
rs200902533 |
CAGAGAG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.56 |
70.0 |
51 |
494.29 |
19.61 |
35.29 |
0 |
37.25 |
0/1 |
| chr1 |
92946479 |
rs11164605 |
G |
A |
. |
PASS |
0.9440000 |
0.8890000 |
0.9752000 |
0.8091000 |
0.9611000 |
0.9189000 |
36.0 |
69.67 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
92979354 |
rs6603979 |
A |
G |
. |
PASS |
0.9508000 |
0.8905000 |
0.9752000 |
0.8072000 |
0.9601000 |
0.9203000 |
36.44 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93073228 |
rs11808092 |
C |
A |
. |
PASS |
0.0696000 |
0.1873000 |
0.0159000 |
0.2744000 |
0.1063000 |
0.1234000 |
35.8 |
70.0 |
43 |
645.35 |
3.02 |
46.51 |
0 |
46.51 |
0/1 |
| chr1 |
93089823 |
rs7514716 |
T |
C |
. |
PASS |
0.9554000 |
0.9395000 |
0.9752000 |
0.9026000 |
0.9683000 |
0.9491000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93128854 |
rs10747450 |
A |
G |
. |
PASS |
0.9561000 |
0.9452000 |
0.9752000 |
0.9046000 |
0.9683000 |
0.9505000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93130042 |
rs59296856,rs10683175 |
T |
TAAA |
. |
PASS |
0.4849000 |
0.4380000 |
0.5218000 |
0.4046000 |
0.4918000 |
0.4710000 |
37.0 |
70.0 |
11 |
408.41 |
29.09 |
45.45 |
0 |
100.00 |
0/1 |
| chr1 |
93130042 |
rs59296856 |
T |
TAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
408.41 |
10.91 |
45.45 |
0 |
100.00 |
0/1 |
| chr1 |
93160002 |
rs34202284 |
G |
A |
. |
PASS |
0.0862000 |
0.1931000 |
0.0317000 |
0.2744000 |
0.1207000 |
0.1346000 |
37.0 |
70.0 |
13 |
304.33 |
20.51 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
93160902 |
rs2391199 |
T |
C |
. |
PASS |
0.9546000 |
0.9452000 |
0.9752000 |
0.9056000 |
0.9683000 |
0.9503000 |
36.13 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93163385 |
rs7418336 |
A |
G |
. |
PASS |
0.5537000 |
0.7075000 |
0.9296000 |
0.6203000 |
0.7843000 |
0.7091000 |
34.6 |
70.0 |
28 |
473.78 |
7.62 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
93163633 |
rs1017008 |
C |
T |
. |
PASS |
0.9546000 |
0.9452000 |
0.9752000 |
0.9056000 |
0.9683000 |
0.9503000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93167854 |
rs10218670 |
A |
G |
. |
PASS |
0.9546000 |
0.9452000 |
0.9752000 |
0.9046000 |
0.9683000 |
0.9501000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93426866 |
rs945629 |
T |
C |
. |
PASS |
0.9796000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9942000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93426869 |
rs1415069 |
G |
C |
. |
PASS |
0.7489000 |
0.7882000 |
0.7639000 |
0.8270000 |
0.7618000 |
0.7756000 |
36.5 |
70.0 |
24 |
950.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93545157 |
rs2815419 |
G |
A |
. |
PASS |
0.3812000 |
0.8761000 |
0.9335000 |
0.9175000 |
0.9254000 |
0.7750000 |
35.96 |
70.0 |
23 |
901.21 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93580581 |
rs2815427 |
G |
C |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
36.51 |
69.73 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93580992 |
rs566843 |
C |
T |
. |
PASS |
0.1626000 |
0.7781000 |
0.9365000 |
0.7425000 |
0.9080000 |
0.6657000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93581024 |
rs2295423 |
T |
C |
. |
PASS |
0.0915000 |
0.5893000 |
0.6409000 |
0.6322000 |
0.6953000 |
0.4976000 |
35.7 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93602194 |
rs2281524 |
C |
T |
. |
PASS |
0.9629000 |
0.8213000 |
0.7024000 |
0.9135000 |
0.7883000 |
0.8468000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93620393 |
rs1060622 |
G |
A |
. |
PASS |
0.0696000 |
0.5836000 |
0.6438000 |
0.6302000 |
0.6912000 |
0.4904000 |
36.22 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93621483 |
rs1057257 |
A |
G |
. |
PASS |
0.1346000 |
0.6023000 |
0.6448000 |
0.6551000 |
0.6963000 |
0.5164000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93649732 |
rs6682670 |
A |
G |
. |
PASS |
0.1339000 |
0.6023000 |
0.6448000 |
0.6541000 |
0.6953000 |
0.5158000 |
36.37 |
70.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93656588 |
rs7541687 |
A |
G |
. |
PASS |
0.1339000 |
0.6023000 |
0.6448000 |
0.6541000 |
0.6953000 |
0.5158000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93659350 |
rs2815411 |
A |
T |
. |
PASS |
0.7844000 |
0.8862000 |
1.0000000 |
0.8091000 |
0.9806000 |
0.8852000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93672723 |
rs2815413 |
A |
C |
. |
PASS |
0.3313000 |
0.8415000 |
0.9623000 |
0.8052000 |
0.9652000 |
0.7480000 |
36.62 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93676314 |
rs555161 |
A |
G |
. |
PASS |
0.1339000 |
0.6023000 |
0.6448000 |
0.6541000 |
0.6953000 |
0.5158000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93676578 |
rs797676 |
A |
G |
. |
PASS |
0.0620000 |
0.5850000 |
0.6448000 |
0.6352000 |
0.6912000 |
0.4898000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93711782 |
rs3754186 |
T |
A |
. |
PASS |
0.0212000 |
0.5274000 |
0.6429000 |
0.5408000 |
0.6431000 |
0.4423000 |
37.0 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93850283 |
rs12133907 |
C |
A |
. |
PASS |
0.1339000 |
0.5692000 |
0.6369000 |
0.6173000 |
0.6513000 |
0.4936000 |
36.08 |
70.0 |
13 |
491.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
93998640 |
rs34814765 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.56 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94040287 |
rs67043929 |
T |
C |
. |
PASS |
0.1460000 |
0.1340000 |
0.0010000 |
0.1918000 |
0.0419000 |
0.1040000 |
35.59 |
70.0 |
44 |
521.17 |
11.23 |
38.64 |
0 |
38.64 |
0/1 |
| chr1 |
94041787 |
rs25569 |
G |
GAC |
. |
PASS |
0.9909000 |
0.8040000 |
0.9980000 |
0.8698000 |
0.9090000 |
0.9261000 |
37.0 |
70.0 |
16 |
308.48 |
10.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
94048485 |
rs12760294 |
C |
G |
. |
PASS |
0.0008000 |
0.0130000 |
0.0000000 |
0.0239000 |
0.0041000 |
0.0075879 |
36.67 |
70.0 |
81 |
1000.00 |
3.09 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
94310694 |
rs2391315 |
G |
C |
. |
PASS |
0.5484000 |
0.4366000 |
0.5883000 |
0.4374000 |
0.6309000 |
0.5347000 |
36.29 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94315977 |
rs2103784 |
G |
C |
. |
PASS |
0.5484000 |
0.4380000 |
0.6200000 |
0.4374000 |
0.6309000 |
0.5413000 |
37.0 |
69.18 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94341137 |
rs2273166 |
C |
T |
. |
PASS |
0.2579000 |
0.3934000 |
0.6190000 |
0.3976000 |
0.6115000 |
0.4465000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94341267 |
rs2273165 |
A |
G |
. |
PASS |
0.5378000 |
0.4337000 |
0.6210000 |
0.4225000 |
0.6237000 |
0.5337000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94342061 |
rs41292661 |
C |
T |
. |
PASS |
0.0015000 |
0.0173000 |
0.0000000 |
0.0368000 |
0.0061000 |
0.0113820 |
36.56 |
70.0 |
62 |
896.70 |
15.65 |
43.55 |
0 |
43.55 |
0/1 |
| chr1 |
94342564 |
rs3747965 |
C |
A |
. |
PASS |
0.0817000 |
0.3300000 |
0.5565000 |
0.3250000 |
0.5133000 |
0.3448000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94343023 |
rs2391322 |
A |
G |
. |
PASS |
0.3782000 |
0.3718000 |
0.5585000 |
0.3499000 |
0.5266000 |
0.4369000 |
37.0 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94343233 |
rs3789457 |
T |
C |
. |
PASS |
0.8094000 |
0.8069000 |
0.7857000 |
0.6620000 |
0.7301000 |
0.7592000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94344716 |
rs2235971 |
C |
T |
. |
PASS |
0.0930000 |
0.3329000 |
0.5565000 |
0.3250000 |
0.5133000 |
0.3482000 |
36.18 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94463366 |
rs7518454 |
G |
C |
. |
PASS |
0.2360000 |
0.0432000 |
0.0952000 |
0.0646000 |
0.0777000 |
0.1156000 |
36.04 |
70.0 |
45 |
848.18 |
0.89 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
94466659 |
rs1801555 |
A |
G |
. |
PASS |
0.7330000 |
0.1297000 |
0.1567000 |
0.1193000 |
0.1748000 |
0.3011000 |
36.65 |
70.0 |
140 |
1000.00 |
6.13 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
94471075 |
rs1762114 |
A |
G |
. |
PASS |
0.3744000 |
0.9006000 |
0.8968000 |
0.9394000 |
0.9070000 |
0.7700000 |
35.21 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94471154 |
rs4147863 |
C |
T |
. |
PASS |
0.1536000 |
0.1282000 |
0.1210000 |
0.1789000 |
0.1145000 |
0.1410000 |
36.25 |
70.0 |
18 |
569.67 |
6.94 |
88.89 |
0 |
88.89 |
0/1 |
| chr1 |
94473845 |
rs2275029 |
T |
C |
. |
PASS |
0.2640000 |
0.1585000 |
0.1200000 |
0.1441000 |
0.1145000 |
0.1671000 |
36.43 |
70.0 |
71 |
1000.00 |
0.34 |
59.15 |
0 |
59.15 |
0/1 |
| chr1 |
94473864 |
rs1800739 |
C |
T |
. |
PASS |
0.2837000 |
0.1801000 |
0.1210000 |
0.1829000 |
0.1145000 |
0.1833000 |
36.33 |
70.0 |
59 |
1000.00 |
1.41 |
61.02 |
0 |
61.02 |
0/1 |
| chr1 |
94473896 |
rs2275031 |
G |
T |
. |
PASS |
0.2655000 |
0.1758000 |
0.1210000 |
0.1839000 |
0.1145000 |
0.1781000 |
36.4 |
70.0 |
35 |
681.43 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
94474185 |
rs2275032 |
A |
C |
. |
PASS |
0.2640000 |
0.1758000 |
0.1210000 |
0.1829000 |
0.1145000 |
0.1775000 |
37.0 |
70.0 |
15 |
210.62 |
13.33 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
94474328 |
rs4147857 |
T |
C |
. |
PASS |
0.2678000 |
0.2320000 |
0.1210000 |
0.1879000 |
0.1155000 |
0.1875000 |
36.51 |
70.0 |
81 |
1000.00 |
4.99 |
60.49 |
0 |
60.49 |
0/1 |
| chr1 |
94474452 |
rs4147856 |
T |
G |
. |
PASS |
0.2685000 |
0.2320000 |
0.1210000 |
0.1879000 |
0.1155000 |
0.1877000 |
36.14 |
70.0 |
24 |
463.92 |
3.57 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
94476388 |
rs1801574 |
C |
G |
. |
PASS |
0.2738000 |
0.2075000 |
0.1200000 |
0.2495000 |
0.1299000 |
0.2007000 |
36.68 |
70.0 |
75 |
1000.00 |
11.86 |
50.67 |
0 |
50.67 |
0/1 |
| chr1 |
94476555 |
rs537831 |
G |
A |
. |
PASS |
0.4470000 |
0.7450000 |
0.8194000 |
0.7097000 |
0.8333000 |
0.6915000 |
37.0 |
70.0 |
11 |
226.81 |
7.79 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
94476695 |
rs2065711 |
C |
T |
. |
PASS |
0.2738000 |
0.2061000 |
0.1200000 |
0.2495000 |
0.1288000 |
0.2003000 |
37.0 |
70.0 |
12 |
140.26 |
46.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
94476991 |
rs4147899 |
CT |
C |
. |
PASS |
0.2731000 |
0.2061000 |
0.1200000 |
0.2495000 |
0.1227000 |
0.1989000 |
36.45 |
70.0 |
109 |
1000.00 |
3.59 |
61.47 |
0 |
61.47 |
0/1 |
| chr1 |
94480037 |
rs2275033 |
C |
T |
. |
PASS |
0.4039000 |
0.2738000 |
0.1399000 |
0.4374000 |
0.3405000 |
0.3271000 |
36.08 |
68.46 |
26 |
420.27 |
23.08 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
94487354 |
rs472908 |
G |
A |
. |
PASS |
0.7648000 |
0.5692000 |
0.4633000 |
0.5586000 |
0.5256000 |
0.5889000 |
37.0 |
70.0 |
42 |
968.91 |
10.58 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
94495930 |
rs547806 |
T |
C |
. |
PASS |
0.9561000 |
1.0000000 |
0.9990000 |
1.0000000 |
1.0000000 |
0.9882000 |
37.0 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94512565 |
rs1801581 |
C |
T |
. |
PASS |
0.0023000 |
0.0086000 |
0.0000000 |
0.0368000 |
0.0317000 |
0.0153750 |
36.76 |
70.0 |
109 |
1000.00 |
5.47 |
46.79 |
0 |
46.79 |
0/1 |
| chr1 |
94526044 |
rs56197337 |
A |
G |
. |
PASS |
0.0756000 |
0.0706000 |
0.0298000 |
0.0408000 |
0.0532000 |
0.0543000 |
36.33 |
70.0 |
30 |
617.09 |
4.44 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
94528363 |
rs4147833 |
C |
T |
. |
PASS |
0.1770000 |
0.2810000 |
0.7758000 |
0.2406000 |
0.4274000 |
0.3736000 |
35.0 |
68.33 |
27 |
363.49 |
9.26 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
94544135 |
rs4147887 |
A |
AC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.84 |
68.06 |
53 |
967.75 |
10.54 |
54.72 |
0 |
54.72 |
0/1 |
| chr1 |
94544276 |
rs4147830 |
G |
A |
. |
PASS |
0.5000000 |
0.4914000 |
0.5992000 |
0.4801000 |
0.5000000 |
0.5148000 |
37.0 |
66.0 |
33 |
285.90 |
18.79 |
30.30 |
0 |
30.30 |
0/1 |
| chr1 |
94544326 |
rs3215952 |
GT |
G |
. |
PASS |
0.5008000 |
0.4914000 |
0.5982000 |
0.4801000 |
0.5010000 |
0.5150000 |
37.0 |
65.0 |
15 |
79.90 |
40.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
94574053 |
rs11165073 |
C |
A |
. |
PASS |
0.4501000 |
0.6052000 |
0.6528000 |
0.4692000 |
0.5859000 |
0.5427000 |
37.0 |
70.0 |
13 |
341.95 |
4.62 |
76.92 |
0 |
76.92 |
0/1 |
| chr1 |
94576893 |
rs2297635 |
G |
A |
. |
PASS |
0.3480000 |
0.1484000 |
0.2609000 |
0.0964000 |
0.1892000 |
0.2212000 |
37.0 |
70.0 |
34 |
575.29 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
94576968 |
rs2297634 |
T |
C |
. |
PASS |
0.4599000 |
0.6081000 |
0.6528000 |
0.4742000 |
0.5869000 |
0.5469000 |
36.4 |
70.0 |
76 |
1000.00 |
1.84 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
94578548 |
rs4847281 |
T |
C |
. |
PASS |
0.9531000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9870000 |
36.45 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94639337 |
rs1330858 |
A |
G |
. |
PASS |
0.8986000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9720000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94639447 |
rs1999272 |
C |
T |
. |
PASS |
0.7980000 |
0.9827000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9439000 |
36.19 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94667430 |
rs5776210 |
G |
GA |
. |
PASS |
0.7973000 |
0.9798000 |
0.9950000 |
0.9891000 |
0.9796000 |
0.9365000 |
36.14 |
70.0 |
14 |
521.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94668046 |
rs1541099 |
C |
T |
. |
PASS |
0.7579000 |
0.9798000 |
0.9990000 |
0.9970000 |
0.9959000 |
0.9317000 |
37.0 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94674723 |
rs6684237 |
G |
A |
. |
PASS |
0.8986000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9720000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94674726 |
rs2274788 |
T |
C |
. |
PASS |
0.0325000 |
0.2421000 |
0.3135000 |
0.2435000 |
0.1524000 |
0.1839000 |
37.0 |
70.0 |
23 |
399.54 |
1.45 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
94930345 |
rs16946 |
G |
A |
. |
PASS |
0.0998000 |
0.3919000 |
0.1994000 |
0.5020000 |
0.2986000 |
0.2800000 |
36.39 |
69.66 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
94938010 |
rs4148072 |
GT |
G |
. |
PASS |
0.5113000 |
0.6254000 |
0.3968000 |
0.5666000 |
0.4755000 |
0.5082000 |
34.67 |
70.0 |
25 |
859.63 |
4.00 |
96.00 |
0 |
96.00 |
1/1 |
| chr1 |
94980671 |
rs3118109 |
C |
G |
. |
PASS |
0.9410000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9836000 |
37.0 |
70.0 |
23 |
921.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95001600 |
rs698946 |
A |
C |
. |
PASS |
0.9365000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9826000 |
36.71 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95284222 |
rs3860348 |
C |
T |
. |
PASS |
0.8480000 |
0.9827000 |
0.9921000 |
1.0000000 |
0.9928000 |
0.9545000 |
34.78 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95284230 |
rs3890118 |
T |
C |
. |
PASS |
0.3525000 |
0.4798000 |
0.3591000 |
0.4294000 |
0.5010000 |
0.4159000 |
37.0 |
70.0 |
28 |
259.19 |
18.25 |
32.14 |
0 |
32.14 |
0/1 |
| chr1 |
95285897 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
15 |
73.30 |
3.33 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
95286085 |
rs11165252 |
G |
A |
. |
PASS |
0.3654000 |
0.3890000 |
0.5982000 |
0.4125000 |
0.2945000 |
0.4111000 |
37.0 |
70.0 |
44 |
628.73 |
2.39 |
43.18 |
0 |
43.18 |
0/1 |
| chr1 |
95286094 |
rs10782992 |
G |
T |
. |
PASS |
0.8495000 |
0.9827000 |
0.9921000 |
0.9990000 |
0.9928000 |
0.9547000 |
36.0 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95286658 |
rs6676991 |
C |
A |
. |
PASS |
0.5318000 |
0.5980000 |
0.3938000 |
0.5895000 |
0.6963000 |
0.5569000 |
35.67 |
70.0 |
33 |
591.91 |
12.12 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
95286675 |
rs11274910,rs58644340 |
GTCCCAAATGTAAA |
G |
. |
PASS |
0.5310000 |
0.5980000 |
0.3938000 |
0.5895000 |
0.6963000 |
0.5567000 |
35.62 |
70.0 |
22 |
410.73 |
18.88 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
95290003 |
rs6687749 |
C |
T |
. |
PASS |
0.5325000 |
0.5980000 |
0.3929000 |
0.5905000 |
0.6963000 |
0.5571000 |
36.4 |
70.0 |
33 |
691.60 |
0.61 |
60.61 |
0 |
60.61 |
0/1 |
| chr1 |
95290305 |
rs6541372 |
T |
C |
. |
PASS |
0.8396000 |
0.9827000 |
0.9921000 |
1.0000000 |
0.9908000 |
0.9519000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95290315 |
rs36094793 |
A |
G |
. |
PASS |
0.2663000 |
0.3833000 |
0.5982000 |
0.4095000 |
0.2955000 |
0.3838000 |
37.0 |
70.0 |
13 |
137.25 |
0.00 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
95305440 |
rs859120 |
A |
G |
. |
PASS |
0.5129000 |
0.5187000 |
0.7044000 |
0.5716000 |
0.5266000 |
0.5667000 |
37.0 |
70.0 |
18 |
122.20 |
4.44 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
95332864 |
rs12137650 |
C |
T |
. |
PASS |
0.2231000 |
0.3357000 |
0.1508000 |
0.3151000 |
0.1452000 |
0.2274000 |
37.0 |
70.0 |
75 |
1000.00 |
8.82 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
95333068 |
rs859096 |
G |
T |
. |
PASS |
0.3396000 |
0.6441000 |
0.7500000 |
0.7227000 |
0.7065000 |
0.6130000 |
36.48 |
70.0 |
23 |
909.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95358096 |
rs859063 |
A |
G |
. |
PASS |
0.3253000 |
0.5144000 |
0.4157000 |
0.6014000 |
0.4663000 |
0.4527000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95367136 |
rs859059 |
G |
A |
. |
PASS |
0.9728000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9916000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95367649 |
rs859058 |
T |
C |
. |
PASS |
0.2784000 |
0.5130000 |
0.4196000 |
0.6034000 |
0.4652000 |
0.4411000 |
36.74 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95607756 |
rs7526279 |
A |
G |
. |
PASS |
0.9251000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9792000 |
34.78 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95614443 |
rs72722133 |
T |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0080000 |
0.0000000 |
0.0015974 |
37.0 |
70.0 |
11 |
180.90 |
15.15 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
95699978 |
rs147737137 |
A |
G |
. |
PASS |
0.0008000 |
0.0216000 |
0.0020000 |
0.0268000 |
0.0501000 |
0.0187700 |
35.29 |
70.0 |
17 |
477.13 |
10.08 |
82.35 |
0 |
82.35 |
0/1 |
| chr1 |
95709821 |
rs259358 |
T |
C |
. |
PASS |
0.9440000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9846000 |
36.66 |
70.0 |
107 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
95709939 |
rs2296308 |
T |
G |
. |
PASS |
0.6823000 |
0.8487000 |
0.8036000 |
0.8728000 |
0.9346000 |
0.8173000 |
36.51 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
96272062 |
rs11589942 |
G |
T |
. |
PASS |
0.1558000 |
0.2824000 |
0.2907000 |
0.2068000 |
0.2454000 |
0.2282000 |
36.33 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
96272249 |
rs67532720 |
A |
G |
. |
PASS |
0.2912000 |
0.3012000 |
0.2966000 |
0.2227000 |
0.2945000 |
0.2806000 |
37.0 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
96610271 |
rs12567412 |
T |
C |
. |
PASS |
0.0930000 |
0.5807000 |
0.6359000 |
0.3797000 |
0.3609000 |
0.3798000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
96884330 |
rs17115225 |
C |
T |
. |
PASS |
0.4871000 |
0.2767000 |
0.2083000 |
0.3231000 |
0.4274000 |
0.3572000 |
37.0 |
69.83 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
96914049 |
rs1931180 |
C |
T |
. |
PASS |
0.5545000 |
0.3473000 |
0.3165000 |
0.4215000 |
0.6411000 |
0.4681000 |
35.6 |
69.77 |
35 |
1000.00 |
3.03 |
97.14 |
0 |
100.00 |
1/1 |
| chr1 |
97145162 |
rs61759529 |
T |
G |
. |
PASS |
0.0098000 |
0.0519000 |
0.1677000 |
0.1233000 |
0.0900000 |
0.0859000 |
35.5 |
69.5 |
14 |
243.39 |
28.57 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
97189091 |
rs3762411 |
G |
A |
. |
PASS |
0.7352000 |
0.5490000 |
0.6339000 |
0.5368000 |
0.6462000 |
0.6318000 |
31.92 |
70.0 |
53 |
761.94 |
2.18 |
49.06 |
0 |
49.06 |
0/1 |
| chr1 |
97272456 |
rs6699932 |
A |
G |
. |
PASS |
0.5408000 |
0.1499000 |
0.2103000 |
0.2117000 |
0.1513000 |
0.2780000 |
35.86 |
70.0 |
43 |
691.27 |
2.21 |
48.84 |
0 |
48.84 |
0/1 |
| chr1 |
97278804 |
rs273886 |
G |
A |
. |
PASS |
0.7345000 |
0.5490000 |
0.6339000 |
0.5358000 |
0.6442000 |
0.6310000 |
36.33 |
70.0 |
37 |
596.02 |
8.71 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
97284839 |
rs603231 |
G |
C |
. |
PASS |
0.6649000 |
0.4597000 |
0.6369000 |
0.3579000 |
0.6247000 |
0.5613000 |
37.0 |
69.05 |
50 |
690.06 |
12.76 |
42.00 |
0 |
42.00 |
0/1 |
| chr1 |
97544771 |
rs290855 |
T |
C |
. |
PASS |
0.6687000 |
0.8545000 |
0.9950000 |
0.8260000 |
0.8947000 |
0.8359000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
97547831 |
rs290854 |
G |
A |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.96 |
70.0 |
23 |
901.21 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
97594060 |
rs4950021 |
G |
T |
. |
PASS |
0.6868000 |
0.4251000 |
0.3363000 |
0.5447000 |
0.3875000 |
0.4930000 |
35.29 |
70.0 |
11 |
210.65 |
5.19 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
97771947 |
rs7556439 |
C |
A |
. |
PASS |
0.0340000 |
0.3963000 |
0.3145000 |
0.3161000 |
0.3262000 |
0.2544000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
97839016 |
rs1890138 |
A |
G |
. |
PASS |
0.2489000 |
0.2507000 |
0.3948000 |
0.2356000 |
0.4663000 |
0.3183000 |
37.0 |
70.0 |
18 |
331.06 |
13.33 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
97847874 |
rs72728438 |
T |
C |
. |
PASS |
0.1611000 |
0.1383000 |
0.2202000 |
0.1968000 |
0.4151000 |
0.2266000 |
37.0 |
70.0 |
14 |
176.01 |
28.57 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
97951926 |
rs10747483 |
T |
C |
. |
PASS |
0.6165000 |
0.6153000 |
0.7302000 |
0.6252000 |
0.6227000 |
0.6422000 |
37.0 |
70.0 |
39 |
518.47 |
5.45 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
97981241 |
. |
ATG |
ACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
70.0 |
18 |
280.28 |
8.89 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
97981395 |
rs1801159 |
T |
C |
. |
PASS |
0.1536000 |
0.2666000 |
0.2659000 |
0.1879000 |
0.0828000 |
0.1849000 |
35.86 |
70.0 |
83 |
1000.00 |
1.15 |
50.60 |
0 |
50.60 |
0/1 |
| chr1 |
97981421 |
rs1801158 |
C |
T |
. |
PASS |
0.0023000 |
0.0130000 |
0.0000000 |
0.0308000 |
0.0051000 |
0.0095847 |
36.4 |
70.0 |
81 |
1000.00 |
1.23 |
49.38 |
0 |
49.38 |
0/1 |
| chr1 |
98348885 |
rs1801265 |
G |
A |
. |
PASS |
0.5582000 |
0.7752000 |
0.9137000 |
0.7853000 |
0.7342000 |
0.7398000 |
36.83 |
69.71 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
98615074 |
rs355361 |
G |
C |
. |
PASS |
0.4682000 |
0.3588000 |
0.4940000 |
0.5239000 |
0.5440000 |
0.4842000 |
36.54 |
70.0 |
60 |
856.80 |
0.00 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
98903864 |
rs11166014 |
T |
C |
. |
PASS |
0.5885000 |
0.4409000 |
0.3393000 |
0.5865000 |
0.4928000 |
0.4988000 |
36.84 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
99127205 |
rs12723363 |
A |
G |
. |
PASS |
0.6346000 |
0.9683000 |
0.8948000 |
0.9751000 |
0.9601000 |
0.8652000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
99127392 |
rs9728148 |
T |
C |
. |
PASS |
0.9841000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9954000 |
37.0 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
99150635 |
rs9433747 |
G |
A |
. |
PASS |
0.6278000 |
0.9568000 |
0.8958000 |
0.9592000 |
0.9581000 |
0.8584000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
99161184 |
rs35391040 |
C |
A |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0080000 |
0.0041000 |
0.0025959 |
36.08 |
70.0 |
50 |
874.89 |
12.31 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
99164434 |
rs6577322 |
G |
A |
. |
PASS |
0.2088000 |
0.2781000 |
0.0595000 |
0.2654000 |
0.3006000 |
0.2177000 |
36.56 |
69.85 |
41 |
959.91 |
3.61 |
65.85 |
0 |
65.85 |
0/1 |
| chr1 |
99225627 |
rs2019213 |
G |
A |
. |
PASS |
0.8661000 |
0.9078000 |
0.6657000 |
0.9871000 |
0.9663000 |
0.8754000 |
36.56 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
99278039 |
rs7536213 |
G |
T |
. |
PASS |
0.4107000 |
0.4625000 |
0.6210000 |
0.3718000 |
0.3548000 |
0.4415000 |
34.6 |
70.0 |
32 |
63.91 |
1.25 |
15.62 |
0 |
15.62 |
0/1 |
| chr1 |
99358542 |
rs55842403 |
C |
T |
. |
PASS |
0.1241000 |
0.1037000 |
0.0575000 |
0.1968000 |
0.1022000 |
0.1182000 |
37.0 |
70.0 |
13 |
262.57 |
1.92 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
99418647 |
rs309087 |
G |
C |
. |
PASS |
0.2738000 |
0.1571000 |
0.2351000 |
0.1789000 |
0.2342000 |
0.2230000 |
37.0 |
70.0 |
101 |
1000.00 |
2.74 |
51.49 |
0 |
51.49 |
0/1 |
| chr1 |
99418911 |
. |
T |
TTGTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
70.0 |
14 |
360.27 |
11.69 |
78.57 |
0 |
78.57 |
0/1 |
| chr1 |
99470269 |
rs12057990 |
T |
C |
. |
PASS |
0.2088000 |
0.2032000 |
0.4365000 |
0.2406000 |
0.1851000 |
0.2556000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
99969159 |
rs7517211 |
G |
C |
. |
PASS |
0.3419000 |
0.4366000 |
0.4196000 |
0.5755000 |
0.5746000 |
0.4631000 |
36.29 |
70.0 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
99969233 |
rs57287141 |
C |
CTT |
. |
PASS |
0.5023000 |
0.3040000 |
0.1855000 |
0.4523000 |
0.3630000 |
0.3738000 |
35.74 |
70.0 |
35 |
961.40 |
26.67 |
60.00 |
0 |
77.14 |
0/1 |
| chr1 |
99969250 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
21 |
55.25 |
133.33 |
19.05 |
0 |
19.05 |
0/1 |
| chr1 |
100152443 |
rs1338576 |
T |
C |
. |
PASS |
0.3487000 |
0.4755000 |
0.4722000 |
0.5348000 |
0.4264000 |
0.4437000 |
34.6 |
68.0 |
20 |
301.03 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
100277599 |
rs1565744 |
G |
A |
. |
PASS |
0.5802000 |
0.5331000 |
0.6468000 |
0.4702000 |
0.5082000 |
0.5509000 |
35.67 |
70.0 |
43 |
565.96 |
10.59 |
41.86 |
0 |
41.86 |
0/1 |
| chr1 |
100316589 |
rs2307130 |
A |
G |
. |
PASS |
0.2231000 |
0.4726000 |
0.5198000 |
0.4573000 |
0.5440000 |
0.4271000 |
35.36 |
70.0 |
49 |
702.96 |
15.21 |
44.90 |
0 |
44.90 |
0/1 |
| chr1 |
100316765 |
rs663848 |
C |
T |
. |
PASS |
0.9342000 |
0.7032000 |
0.6835000 |
0.6750000 |
0.7444000 |
0.7626000 |
37.0 |
70.0 |
30 |
378.48 |
6.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
100329889 |
rs535461 |
G |
C |
. |
PASS |
0.8797000 |
0.6844000 |
0.6835000 |
0.6471000 |
0.7423000 |
0.7396000 |
35.0 |
70.0 |
14 |
159.85 |
9.52 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
100336361 |
rs2230306 |
C |
T |
. |
PASS |
0.9334000 |
0.7017000 |
0.6835000 |
0.6759000 |
0.7454000 |
0.7626000 |
37.0 |
70.0 |
35 |
655.82 |
1.50 |
54.29 |
0 |
54.29 |
0/1 |
| chr1 |
100342227 |
rs3736295 |
C |
T |
. |
PASS |
0.4191000 |
0.6095000 |
0.6796000 |
0.5348000 |
0.6094000 |
0.5583000 |
37.0 |
70.0 |
17 |
375.83 |
7.49 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
100343153 |
rs2291638 |
A |
G |
. |
PASS |
0.0439000 |
0.3833000 |
0.4365000 |
0.3569000 |
0.3078000 |
0.2843000 |
37.0 |
70.0 |
15 |
131.23 |
13.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
100345409 |
rs2392077 |
C |
G |
. |
PASS |
0.3623000 |
0.5879000 |
0.6796000 |
0.5089000 |
0.6063000 |
0.5345000 |
37.0 |
70.0 |
14 |
213.63 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
100346741 |
rs3736296 |
T |
C |
. |
PASS |
0.4206000 |
0.6095000 |
0.6796000 |
0.5338000 |
0.6094000 |
0.5585000 |
36.27 |
70.0 |
47 |
1000.00 |
7.61 |
70.21 |
0 |
70.21 |
0/1 |
| chr1 |
100353675 |
rs555929 |
G |
A |
. |
PASS |
0.5855000 |
0.7075000 |
0.7073000 |
0.6889000 |
0.7566000 |
0.6811000 |
37.0 |
70.0 |
77 |
905.34 |
3.90 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
100357041 |
rs2035960 |
A |
G |
. |
PASS |
0.4191000 |
0.6095000 |
0.6796000 |
0.5348000 |
0.6104000 |
0.5585000 |
34.0 |
70.0 |
11 |
89.49 |
9.09 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
100357141 |
rs2035961 |
T |
A |
. |
PASS |
0.3616000 |
0.5879000 |
0.6796000 |
0.5089000 |
0.6063000 |
0.5343000 |
36.0 |
70.0 |
35 |
347.26 |
2.38 |
34.29 |
0 |
34.29 |
0/1 |
| chr1 |
100358200 |
rs594249 |
G |
A |
. |
PASS |
0.5855000 |
0.7075000 |
0.7073000 |
0.6899000 |
0.7577000 |
0.6815000 |
35.8 |
70.0 |
25 |
297.99 |
4.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
100376448 |
rs2274570 |
G |
A |
. |
PASS |
0.3495000 |
0.5663000 |
0.5744000 |
0.5010000 |
0.3804000 |
0.4613000 |
35.4 |
70.0 |
23 |
500.84 |
11.59 |
65.22 |
0 |
65.22 |
0/1 |
| chr1 |
100376456 |
rs1541041 |
T |
A |
. |
PASS |
0.3487000 |
0.5663000 |
0.5694000 |
0.5000000 |
0.3804000 |
0.4599000 |
36.2 |
70.0 |
23 |
508.70 |
7.54 |
65.22 |
0 |
65.22 |
0/1 |
| chr1 |
100533960 |
rs6687189 |
G |
A |
. |
PASS |
0.0643000 |
0.5576000 |
0.5546000 |
0.3847000 |
0.2873000 |
0.3393000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100568759 |
rs544225 |
C |
G |
. |
PASS |
0.7141000 |
0.6787000 |
0.6746000 |
0.5427000 |
0.5440000 |
0.6336000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100575933 |
rs13375867 |
G |
A |
. |
PASS |
0.0658000 |
0.5562000 |
0.5813000 |
0.3867000 |
0.3129000 |
0.3502000 |
36.13 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100598865 |
rs35216047 |
CGC |
CAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100617887 |
rs2784177 |
C |
T |
. |
PASS |
0.7874000 |
0.9467000 |
0.9474000 |
0.9195000 |
0.9642000 |
0.9028000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100671866 |
rs34229137 |
T |
A |
. |
PASS |
0.0772000 |
0.4251000 |
0.2500000 |
0.3877000 |
0.3119000 |
0.2684000 |
36.29 |
70.0 |
21 |
559.50 |
20.83 |
76.19 |
0 |
80.95 |
0/1 |
| chr1 |
100672060 |
rs12021720 |
T |
C |
. |
PASS |
0.7443000 |
0.9481000 |
0.9494000 |
0.9215000 |
0.9611000 |
0.8918000 |
36.61 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100715454 |
rs3806235 |
G |
A |
. |
PASS |
0.3222000 |
0.8660000 |
0.9216000 |
0.8598000 |
0.8282000 |
0.7250000 |
35.91 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100750733 |
rs58046505 |
AGTTTT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.13 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100797449 |
rs614766 |
A |
T |
. |
PASS |
0.9281000 |
0.4640000 |
0.4623000 |
0.5388000 |
0.5900000 |
0.6258000 |
35.67 |
70.0 |
18 |
688.21 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100797473 |
rs614805 |
T |
C |
. |
PASS |
0.9660000 |
0.4683000 |
0.4623000 |
0.5398000 |
0.5920000 |
0.6370000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100818464 |
rs594529 |
T |
C |
. |
PASS |
1.0000000 |
0.9712000 |
0.9812000 |
0.9801000 |
0.9755000 |
0.9834000 |
37.0 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
100970346 |
rs10875295 |
T |
C |
. |
PASS |
0.6241000 |
0.4337000 |
0.5079000 |
0.4702000 |
0.3691000 |
0.4936000 |
36.71 |
70.0 |
125 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
101188963 |
rs72732161 |
C |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
10 |
183.90 |
26.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
101194965 |
rs68164684 |
G |
GT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.06 |
69.38 |
31 |
1000.00 |
5.42 |
80.65 |
0 |
100.00 |
0/1 |
| chr1 |
101199979 |
rs3176875 |
A |
G |
. |
PASS |
0.8328000 |
0.9813000 |
0.8532000 |
0.9801000 |
0.9714000 |
0.9141000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
101203827 |
rs3176879 |
G |
A |
. |
PASS |
0.6929000 |
0.9625000 |
0.8512000 |
0.9702000 |
0.9663000 |
0.8712000 |
36.5 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
101272402 |
rs12132178 |
C |
A |
. |
PASS |
0.3154000 |
0.4611000 |
0.4048000 |
0.5646000 |
0.5440000 |
0.4483000 |
36.75 |
70.0 |
87 |
1000.00 |
0.57 |
55.17 |
0 |
55.17 |
0/1 |
| chr1 |
101372607 |
rs4908106 |
C |
A |
. |
PASS |
0.9985000 |
0.9971000 |
1.0000000 |
0.9980000 |
0.9939000 |
0.9976000 |
36.14 |
70.0 |
14 |
533.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
101487373 |
rs201632964 |
A |
AACAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
288.76 |
27.27 |
18.18 |
0 |
81.82 |
0/1 |
| chr1 |
101487373 |
rs201632964 |
A |
AAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
70.0 |
11 |
288.76 |
12.99 |
63.64 |
0 |
81.82 |
0/1 |
| chr1 |
101621088 |
rs4000121 |
C |
G |
. |
PASS |
0.6301000 |
0.6902000 |
0.3056000 |
0.6362000 |
0.4949000 |
0.5479000 |
36.6 |
70.0 |
119 |
1000.00 |
4.29 |
50.42 |
0 |
50.42 |
0/1 |
| chr1 |
101621090 |
rs11426636 |
G |
GC |
. |
PASS |
0.1861000 |
0.2349000 |
0.2351000 |
0.3131000 |
0.2945000 |
0.2494000 |
35.71 |
70.0 |
116 |
1000.00 |
3.26 |
46.55 |
0 |
46.55 |
0/1 |
| chr1 |
101704532 |
rs3737577 |
G |
T |
. |
PASS |
0.0151000 |
0.1729000 |
0.1300000 |
0.3380000 |
0.1247000 |
0.1464000 |
36.2 |
70.0 |
35 |
472.58 |
9.52 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
102252024 |
rs61806265 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.44 |
133 |
319.07 |
0.42 |
13.53 |
0 |
13.53 |
0/1 |
| chr1 |
102252078 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
56.14 |
188 |
262.69 |
7.95 |
11.17 |
0 |
11.17 |
0/1 |
| chr1 |
102271774 |
rs4907955 |
G |
A |
. |
PASS |
0.5908000 |
0.4150000 |
0.6478000 |
0.5845000 |
0.3231000 |
0.5244000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
102273920 |
rs71592229,rs57341152 |
AAAGATG |
A |
. |
PASS |
0.5499000 |
0.3977000 |
0.6478000 |
0.5586000 |
0.3037000 |
0.5022000 |
36.17 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
102273948 |
rs10782853 |
G |
T |
. |
PASS |
0.5484000 |
0.3977000 |
0.6478000 |
0.5586000 |
0.3037000 |
0.5018000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
102462446 |
rs11276972,rs67744758 |
GTCAGT |
G |
. |
PASS |
0.2360000 |
0.2450000 |
0.2192000 |
0.3489000 |
0.3292000 |
0.2748000 |
35.72 |
70.0 |
25 |
967.18 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
102608577 |
rs2022858 |
G |
A |
. |
PASS |
0.4690000 |
0.5677000 |
0.4950000 |
0.5865000 |
0.5031000 |
0.5182000 |
36.59 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
102841361 |
. |
A |
ATGTGTGTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
11 |
113.68 |
45.45 |
18.18 |
0 |
45.45 |
0/1 |
| chr1 |
103354138 |
rs1676486 |
A |
G |
. |
PASS |
0.8048000 |
0.8948000 |
0.7480000 |
0.8300000 |
0.6616000 |
0.7829000 |
35.29 |
70.0 |
56 |
920.50 |
3.57 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
103354428 |
rs1763347 |
A |
G |
. |
PASS |
0.2587000 |
0.8401000 |
0.7460000 |
0.8042000 |
0.6462000 |
0.6226000 |
36.0 |
70.0 |
42 |
330.35 |
2.38 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
103354939 |
. |
C |
CTG |
. |
PASS |
0.1490000 |
0.6931000 |
0.5754000 |
0.5278000 |
0.4581000 |
0.4261000 |
35.8 |
70.0 |
26 |
481.23 |
15.90 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
103364396 |
rs1763344 |
C |
T |
. |
PASS |
0.1694000 |
0.0533000 |
0.0655000 |
0.0835000 |
0.0429000 |
0.0905000 |
37.0 |
70.0 |
10 |
62.74 |
40.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
103364409 |
rs1676497 |
A |
T |
. |
PASS |
0.3464000 |
0.0634000 |
0.0655000 |
0.0835000 |
0.0429000 |
0.1386000 |
37.0 |
70.0 |
15 |
168.85 |
26.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
103364618 |
rs1676498 |
A |
T |
. |
PASS |
0.1694000 |
0.0533000 |
0.0655000 |
0.0835000 |
0.0429000 |
0.0905000 |
34.0 |
70.0 |
13 |
79.33 |
11.54 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
103388799 |
rs34112708,rs72309176 |
TAC |
T |
. |
PASS |
0.0008000 |
0.0245000 |
0.0645000 |
0.0567000 |
0.0552000 |
0.0387000 |
36.33 |
70.0 |
23 |
255.66 |
0.97 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
103400490 |
. |
TGA |
TAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
55.58 |
18.18 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
103405793 |
rs2126642 |
G |
A |
. |
PASS |
0.0681000 |
0.2305000 |
0.1042000 |
0.2406000 |
0.2086000 |
0.1599000 |
37.0 |
70.0 |
10 |
271.59 |
0.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
103405892 |
rs17127270 |
G |
A |
. |
PASS |
0.1989000 |
0.0634000 |
0.0258000 |
0.1769000 |
0.1053000 |
0.1226000 |
35.29 |
70.0 |
37 |
136.55 |
45.56 |
18.92 |
0 |
18.92 |
0/1 |
| chr1 |
103427844 |
rs55682104 |
T |
A |
. |
PASS |
0.0091000 |
0.0389000 |
0.0060000 |
0.1292000 |
0.0900000 |
0.0525000 |
36.74 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103444679 |
rs11164649 |
T |
G |
. |
PASS |
0.1717000 |
0.6916000 |
0.9127000 |
0.7018000 |
0.8364000 |
0.6292000 |
36.62 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103449598 |
rs2615978 |
G |
C |
. |
PASS |
0.8510000 |
0.9726000 |
1.0000000 |
0.9662000 |
0.9908000 |
0.9483000 |
37.0 |
70.0 |
16 |
628.69 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103461508 |
rs2622867 |
T |
A |
. |
PASS |
0.7632000 |
0.9640000 |
1.0000000 |
0.9662000 |
0.9908000 |
0.9239000 |
36.78 |
69.63 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103463976 |
rs2622870 |
G |
T |
. |
PASS |
0.6074000 |
0.9366000 |
0.9335000 |
0.9354000 |
0.9397000 |
0.8494000 |
36.48 |
70.0 |
23 |
909.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103467615 |
rs2929162 |
C |
T |
. |
PASS |
0.7640000 |
0.9640000 |
1.0000000 |
0.9662000 |
0.9908000 |
0.9241000 |
37.0 |
68.46 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103471734 |
. |
A |
AAAATAAATAAATAAAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
66.67 |
20 |
408.75 |
23.64 |
55.00 |
0 |
65.00 |
0/1 |
| chr1 |
103483514 |
rs945748 |
C |
T |
. |
PASS |
0.2012000 |
0.6902000 |
0.9117000 |
0.7028000 |
0.8476000 |
0.6390000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103487394 |
rs35291481 |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.24 |
70.0 |
25 |
930.15 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103491008 |
rs41292531 |
G |
A |
. |
PASS |
0.0015000 |
0.0029000 |
0.0000000 |
0.0109000 |
0.0112000 |
0.0051917 |
37.0 |
70.0 |
27 |
596.36 |
5.23 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
103496620 |
rs7523441 |
G |
T |
. |
PASS |
0.8313000 |
0.9726000 |
1.0000000 |
0.9662000 |
0.9908000 |
0.9431000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
103573547 |
rs6691654 |
G |
A |
. |
PASS |
0.5484000 |
0.9496000 |
0.9950000 |
0.9960000 |
0.9980000 |
0.8716000 |
35.5 |
70.0 |
16 |
608.82 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
104231733 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
34.75 |
24 |
58.22 |
41.67 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
104470005 |
rs7550463 |
T |
C |
. |
PASS |
0.8419000 |
0.9856000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9559000 |
36.44 |
69.02 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
105285402 |
rs10881195 |
A |
G |
. |
PASS |
0.4546000 |
0.5764000 |
0.3274000 |
0.5835000 |
0.4908000 |
0.4788000 |
36.04 |
70.0 |
67 |
786.10 |
2.51 |
37.31 |
0 |
37.31 |
0/1 |
| chr1 |
105638421 |
rs11184419 |
C |
T |
. |
PASS |
0.4251000 |
0.6009000 |
0.6696000 |
0.6471000 |
0.5726000 |
0.5721000 |
36.4 |
70.0 |
45 |
655.48 |
11.11 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
106306104 |
rs1528685 |
C |
T |
. |
PASS |
0.0318000 |
0.2493000 |
0.3958000 |
0.3370000 |
0.3108000 |
0.2510000 |
35.29 |
70.0 |
13 |
208.78 |
17.58 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
106306182 |
rs791002 |
C |
T |
. |
PASS |
0.3064000 |
0.6715000 |
0.5486000 |
0.6402000 |
0.5757000 |
0.5254000 |
36.4 |
70.0 |
58 |
616.35 |
2.76 |
34.48 |
0 |
34.48 |
0/1 |
| chr1 |
106434008 |
rs1674733 |
C |
T |
. |
PASS |
0.9970000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9990000 |
37.0 |
69.56 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
106435109 |
rs12753157 |
A |
T |
. |
PASS |
0.0197000 |
0.1441000 |
0.1577000 |
0.2406000 |
0.1912000 |
0.1426000 |
37.0 |
70.0 |
16 |
291.15 |
1.39 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
107220341 |
rs11184961 |
A |
G |
. |
PASS |
0.3283000 |
0.6037000 |
0.4802000 |
0.6819000 |
0.6022000 |
0.5216000 |
36.72 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
107559668 |
rs35817131,rs55823123 |
T |
TCTC |
. |
PASS |
0.6135000 |
0.3991000 |
0.4603000 |
0.5616000 |
0.5245000 |
0.5252000 |
36.76 |
70.0 |
89 |
1000.00 |
4.63 |
53.93 |
0 |
53.93 |
0/1 |
| chr1 |
107599918 |
rs2232016 |
C |
T |
. |
PASS |
0.0098000 |
0.0865000 |
0.1448000 |
0.1918000 |
0.2198000 |
0.1252000 |
37.0 |
70.0 |
95 |
1000.00 |
10.03 |
44.21 |
0 |
44.21 |
0/1 |
| chr1 |
107936371 |
rs17018855 |
G |
A |
. |
PASS |
0.0303000 |
0.0072000 |
0.0407000 |
0.0239000 |
0.0450000 |
0.0308000 |
36.54 |
70.0 |
44 |
909.11 |
1.40 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
107936393 |
rs2587895 |
G |
A |
. |
PASS |
0.5091000 |
0.5389000 |
0.5169000 |
0.5030000 |
0.4826000 |
0.5084000 |
36.59 |
70.0 |
54 |
1000.00 |
3.96 |
53.70 |
0 |
53.70 |
0/1 |
| chr1 |
107979396 |
rs480392 |
A |
C |
. |
PASS |
0.8185000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9503000 |
36.59 |
69.77 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
107979566 |
rs56311800 |
AT |
A |
. |
PASS |
0.4697000 |
0.6772000 |
0.5427000 |
0.6769000 |
0.6452000 |
0.5891000 |
33.0 |
70.0 |
11 |
370.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
108047973 |
rs12063102 |
C |
T |
. |
PASS |
0.0787000 |
0.0375000 |
0.0119000 |
0.0388000 |
0.0266000 |
0.0413000 |
37.0 |
70.0 |
45 |
458.64 |
22.22 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
108116051 |
rs17236099 |
G |
A |
. |
PASS |
0.0552000 |
0.0159000 |
0.0536000 |
0.0318000 |
0.0266000 |
0.0391000 |
35.18 |
70.0 |
62 |
1000.00 |
1.08 |
53.23 |
0 |
53.23 |
0/1 |
| chr1 |
108185301 |
rs12403266 |
C |
G |
. |
PASS |
0.0469000 |
0.1671000 |
0.2262000 |
0.1302000 |
0.2301000 |
0.1522000 |
36.56 |
70.0 |
112 |
1000.00 |
1.82 |
49.11 |
0 |
49.11 |
0/1 |
| chr1 |
108292260 |
rs6672483 |
A |
G |
. |
PASS |
0.6921000 |
0.8098000 |
0.9563000 |
0.6133000 |
0.8405000 |
0.7748000 |
37.0 |
70.0 |
13 |
262.57 |
3.85 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
108299809 |
rs12138353 |
G |
A |
. |
PASS |
0.4826000 |
0.5375000 |
0.3641000 |
0.5209000 |
0.5879000 |
0.4946000 |
37.0 |
70.0 |
13 |
53.72 |
10.26 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
108303172 |
rs11185174 |
G |
C |
. |
PASS |
0.5477000 |
0.3775000 |
0.4177000 |
0.6372000 |
0.3354000 |
0.4744000 |
35.67 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
108307642 |
rs7514025 |
C |
T |
. |
PASS |
0.6876000 |
0.6268000 |
0.7302000 |
0.7853000 |
0.5930000 |
0.6889000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
108307727 |
rs7528153 |
T |
A |
. |
PASS |
0.5862000 |
0.4251000 |
0.3879000 |
0.7038000 |
0.3824000 |
0.5078000 |
36.22 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
108313258 |
rs6583048 |
C |
T |
. |
PASS |
0.6876000 |
0.6196000 |
0.6776000 |
0.7753000 |
0.5706000 |
0.6709000 |
37.0 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
108315305 |
rs4611048 |
C |
T |
. |
PASS |
0.8427000 |
0.9813000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9555000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
108507541 |
rs71796067 |
GGCC |
G |
. |
PASS |
0.3578000 |
0.7723000 |
0.8264000 |
0.7386000 |
0.6554000 |
0.6442000 |
36.7 |
70.0 |
20 |
659.05 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
108581907 |
rs4626916 |
G |
A |
. |
PASS |
0.4017000 |
0.4207000 |
0.6845000 |
0.3419000 |
0.3252000 |
0.4343000 |
36.65 |
70.0 |
131 |
1000.00 |
6.76 |
51.91 |
0 |
51.91 |
0/1 |
| chr1 |
108679532 |
rs17513812 |
C |
T |
. |
PASS |
0.1067000 |
0.1715000 |
0.0774000 |
0.2068000 |
0.1503000 |
0.1384000 |
37.0 |
70.0 |
21 |
71.41 |
11.90 |
19.05 |
0 |
19.05 |
0/1 |
| chr1 |
108681600 |
rs34563977 |
T |
C |
. |
PASS |
0.1067000 |
0.1715000 |
0.0794000 |
0.2068000 |
0.1503000 |
0.1388000 |
36.43 |
70.0 |
44 |
700.26 |
5.63 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
108703834 |
rs11185293 |
C |
T |
. |
PASS |
0.0076000 |
0.0288000 |
0.0040000 |
0.0775000 |
0.0613000 |
0.0343000 |
37.0 |
70.0 |
62 |
908.72 |
6.93 |
43.55 |
0 |
43.55 |
0/1 |
| chr1 |
108724518 |
rs490680 |
A |
G |
. |
PASS |
0.9009000 |
0.5591000 |
0.6240000 |
0.6829000 |
0.5644000 |
0.6883000 |
35.5 |
70.0 |
27 |
530.57 |
6.02 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
108724693 |
rs491785 |
G |
A |
. |
PASS |
0.9009000 |
0.5591000 |
0.6240000 |
0.6829000 |
0.5644000 |
0.6883000 |
37.0 |
68.46 |
23 |
441.32 |
0.67 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
108728484 |
rs862493 |
T |
C |
. |
PASS |
0.1815000 |
0.1657000 |
0.0794000 |
0.2157000 |
0.1769000 |
0.1647000 |
35.34 |
70.0 |
62 |
944.24 |
7.56 |
46.77 |
0 |
46.77 |
0/1 |
| chr1 |
108766424 |
rs3879436 |
A |
G |
. |
PASS |
0.1127000 |
0.5677000 |
0.5456000 |
0.3807000 |
0.5624000 |
0.4046000 |
37.0 |
66.92 |
50 |
360.05 |
29.23 |
26.00 |
0 |
26.00 |
0/1 |
| chr1 |
108771524 |
rs200205508 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
63.42 |
37 |
345.40 |
4.50 |
32.43 |
0 |
32.43 |
0/1 |
| chr1 |
108771721 |
rs79996376 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.89 |
168 |
1000.00 |
1.07 |
33.93 |
0 |
33.93 |
0/1 |
| chr1 |
108775036 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
35.0 |
16 |
82.30 |
0.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
108786457 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
58.59 |
20.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
108879078 |
rs6690492 |
T |
C |
. |
PASS |
0.4319000 |
0.5893000 |
0.5913000 |
0.3688000 |
0.5491000 |
0.4960000 |
37.0 |
70.0 |
36 |
527.49 |
6.94 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
108994925 |
rs115514944 |
A |
G |
. |
PASS |
0.2262000 |
0.7767000 |
0.8601000 |
0.7813000 |
0.8364000 |
0.6607000 |
36.77 |
54.04 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
108994952 |
rs145700606 |
G |
T |
. |
PASS |
0.2625000 |
0.7882000 |
0.8611000 |
0.7922000 |
0.8415000 |
0.6753000 |
36.41 |
54.1 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109008064 |
. |
G |
A |
. |
PASS |
0.0008000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0020000 |
0.0007987 |
37.0 |
54.0 |
16 |
86.45 |
37.50 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
109143093 |
rs17024882 |
C |
T |
. |
PASS |
0.0008000 |
0.0663000 |
0.0000000 |
0.0497000 |
0.0358000 |
0.0264000 |
35.0 |
70.0 |
13 |
167.02 |
0.00 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
109170746 |
rs2133198 |
C |
T |
. |
PASS |
0.5121000 |
0.7925000 |
0.7599000 |
0.9324000 |
0.8241000 |
0.7462000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109254666 |
rs1475694 |
A |
T |
. |
PASS |
0.4924000 |
0.5720000 |
0.6052000 |
0.6372000 |
0.5573000 |
0.5679000 |
36.25 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109254672 |
rs1475693 |
T |
C |
. |
PASS |
0.5756000 |
0.5677000 |
0.6111000 |
0.6372000 |
0.5583000 |
0.5907000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109255513 |
rs3006864 |
G |
T |
. |
PASS |
0.6097000 |
0.9654000 |
0.9018000 |
0.9851000 |
0.9703000 |
0.8636000 |
36.25 |
70.0 |
16 |
616.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109260357 |
rs4970804 |
G |
A |
. |
PASS |
0.2398000 |
0.6816000 |
0.8185000 |
0.6362000 |
0.6902000 |
0.5851000 |
35.67 |
70.0 |
21 |
268.24 |
0.00 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
109265029 |
rs4423040 |
G |
T |
. |
PASS |
0.2496000 |
0.6657000 |
0.8621000 |
0.6044000 |
0.6431000 |
0.5787000 |
36.62 |
70.0 |
60 |
1000.00 |
3.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
109268573 |
rs4494160 |
T |
C |
. |
PASS |
0.7958000 |
0.5346000 |
0.2341000 |
0.7127000 |
0.6063000 |
0.5929000 |
36.39 |
69.75 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109270402 |
rs10494096 |
G |
A |
. |
PASS |
0.2239000 |
0.3213000 |
0.1865000 |
0.4841000 |
0.4642000 |
0.3291000 |
37.0 |
70.0 |
20 |
408.57 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
109273456 |
rs4970809 |
A |
G |
. |
PASS |
0.5628000 |
0.4352000 |
0.2014000 |
0.5388000 |
0.4744000 |
0.4503000 |
35.29 |
70.0 |
78 |
854.28 |
4.58 |
35.90 |
0 |
35.90 |
0/1 |
| chr1 |
109273610 |
rs4970810 |
G |
A |
. |
PASS |
0.5711000 |
0.4352000 |
0.1984000 |
0.5378000 |
0.4703000 |
0.4509000 |
37.0 |
70.0 |
14 |
134.24 |
2.86 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
109289353 |
rs1124427 |
C |
G |
. |
PASS |
0.7012000 |
0.5173000 |
0.2232000 |
0.7416000 |
0.6268000 |
0.5731000 |
37.0 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109289487 |
rs6604120 |
C |
T |
. |
PASS |
0.7012000 |
0.5173000 |
0.2232000 |
0.7425000 |
0.6237000 |
0.5727000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109299453 |
rs1277044 |
C |
G |
. |
PASS |
0.7080000 |
0.5216000 |
0.2222000 |
0.7425000 |
0.6278000 |
0.5757000 |
35.46 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109301250 |
rs1277042 |
G |
C |
. |
PASS |
0.7080000 |
0.5202000 |
0.2222000 |
0.7425000 |
0.6278000 |
0.5755000 |
37.0 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109325028 |
rs1277051 |
T |
C |
. |
PASS |
0.2368000 |
0.1138000 |
0.0258000 |
0.2306000 |
0.1800000 |
0.1649000 |
36.48 |
70.0 |
43 |
786.81 |
8.90 |
53.49 |
0 |
53.49 |
0/1 |
| chr1 |
109338861 |
rs1127635 |
G |
C |
. |
PASS |
0.2731000 |
0.3213000 |
0.1925000 |
0.4334000 |
0.4458000 |
0.3295000 |
37.0 |
70.0 |
38 |
308.49 |
1.44 |
28.95 |
0 |
28.95 |
0/1 |
| chr1 |
109358755 |
rs11453763 |
A |
AT |
. |
PASS |
0.2474000 |
0.3228000 |
0.2173000 |
0.4414000 |
0.4458000 |
0.3295000 |
37.0 |
70.0 |
21 |
389.97 |
9.52 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
109358958 |
rs6696787 |
T |
C |
. |
PASS |
0.1097000 |
0.2032000 |
0.0784000 |
0.2276000 |
0.1933000 |
0.1564000 |
35.8 |
70.0 |
32 |
682.60 |
11.25 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
109366286 |
rs7522157 |
C |
T |
. |
PASS |
0.0598000 |
0.1787000 |
0.1121000 |
0.2873000 |
0.2301000 |
0.1657000 |
37.0 |
70.0 |
79 |
1000.00 |
6.93 |
53.16 |
0 |
53.16 |
0/1 |
| chr1 |
109366370 |
rs7522260 |
C |
T |
. |
PASS |
0.3192000 |
0.5130000 |
0.3562000 |
0.6590000 |
0.5767000 |
0.4720000 |
36.41 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109369791 |
rs11102505 |
G |
A |
. |
PASS |
0.3480000 |
0.1945000 |
0.1240000 |
0.2396000 |
0.1933000 |
0.2296000 |
36.61 |
70.0 |
53 |
1000.00 |
3.53 |
58.49 |
0 |
58.49 |
0/1 |
| chr1 |
109369797 |
rs11102506 |
T |
G |
. |
PASS |
0.6331000 |
0.5360000 |
0.2649000 |
0.5934000 |
0.4775000 |
0.5072000 |
36.81 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109369915 |
rs7551421 |
G |
T |
. |
PASS |
0.6331000 |
0.5288000 |
0.2649000 |
0.5805000 |
0.4755000 |
0.5032000 |
36.4 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109377070 |
rs12060255 |
C |
A |
. |
PASS |
0.2095000 |
0.0951000 |
0.1200000 |
0.1133000 |
0.0900000 |
0.1330000 |
35.88 |
70.0 |
65 |
1000.00 |
4.52 |
49.23 |
0 |
49.23 |
0/1 |
| chr1 |
109377436 |
rs41278492 |
C |
T |
. |
PASS |
0.0257000 |
0.0677000 |
0.1151000 |
0.0477000 |
0.0348000 |
0.0557000 |
35.0 |
70.0 |
10 |
176.04 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
109377537 |
rs12057309 |
G |
A |
. |
PASS |
0.1967000 |
0.0922000 |
0.1181000 |
0.1113000 |
0.0879000 |
0.1280000 |
37.0 |
70.0 |
63 |
696.85 |
4.76 |
34.92 |
0 |
34.92 |
0/1 |
| chr1 |
109391486 |
rs1149142 |
G |
A |
. |
PASS |
0.9584000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9886000 |
36.77 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109394564 |
rs17030016 |
T |
C |
. |
PASS |
0.1127000 |
0.0663000 |
0.0407000 |
0.0537000 |
0.0951000 |
0.0765000 |
36.57 |
70.0 |
70 |
914.40 |
11.43 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
109395105 |
rs1277207 |
C |
T |
. |
PASS |
0.8797000 |
0.8790000 |
0.9395000 |
0.7903000 |
0.8456000 |
0.8670000 |
35.43 |
70.0 |
52 |
735.71 |
15.05 |
44.23 |
0 |
44.23 |
0/1 |
| chr1 |
109428249 |
rs10857987 |
G |
A |
. |
PASS |
0.5635000 |
0.2118000 |
0.0546000 |
0.2942000 |
0.2566000 |
0.2983000 |
35.29 |
70.0 |
51 |
655.19 |
7.84 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
109457151 |
rs11102642 |
C |
T |
. |
PASS |
0.0446000 |
0.2752000 |
0.3214000 |
0.2237000 |
0.1626000 |
0.1913000 |
34.0 |
70.0 |
13 |
83.47 |
30.77 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
109465165 |
rs35029887,rs374875864 |
ACTT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.02 |
70.0 |
91 |
1000.00 |
5.73 |
56.04 |
0 |
56.04 |
0/1 |
| chr1 |
109479978 |
rs168107 |
G |
T |
. |
PASS |
0.6233000 |
0.2147000 |
0.0377000 |
0.2803000 |
0.2505000 |
0.3071000 |
37.0 |
70.0 |
52 |
475.20 |
14.42 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
109482220 |
rs338480 |
C |
T |
. |
PASS |
0.3101000 |
0.1585000 |
0.0337000 |
0.2157000 |
0.1943000 |
0.1919000 |
37.0 |
70.0 |
40 |
766.08 |
3.18 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
109482826 |
rs338479 |
C |
T |
. |
PASS |
0.4107000 |
0.1715000 |
0.0218000 |
0.2217000 |
0.2106000 |
0.2222000 |
37.0 |
70.0 |
25 |
435.29 |
5.54 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
109483975 |
rs193139 |
T |
C |
. |
PASS |
0.3911000 |
0.1441000 |
0.0228000 |
0.1461000 |
0.1104000 |
0.1787000 |
37.0 |
70.0 |
26 |
432.29 |
15.38 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
109486196 |
rs338466 |
A |
G |
. |
PASS |
0.7579000 |
0.5101000 |
0.3958000 |
0.5219000 |
0.4254000 |
0.5383000 |
36.83 |
69.71 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109486240 |
rs3215062 |
TA |
T |
. |
PASS |
0.6263000 |
0.4726000 |
0.3948000 |
0.4632000 |
0.4110000 |
0.4836000 |
36.44 |
69.53 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109486269 |
rs41336244 |
C |
A |
. |
PASS |
0.0166000 |
0.0692000 |
0.0218000 |
0.0497000 |
0.0644000 |
0.0409000 |
35.8 |
70.0 |
22 |
302.85 |
5.45 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
109493134 |
rs10695133,rs34131552 |
G |
GTTA |
. |
PASS |
0.4766000 |
0.4164000 |
0.3690000 |
0.4284000 |
0.3384000 |
0.4099000 |
36.67 |
70.0 |
26 |
343.92 |
2.56 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
109524584 |
rs487901 |
C |
A |
. |
PASS |
0.1218000 |
0.2536000 |
0.2163000 |
0.2078000 |
0.1677000 |
0.1853000 |
35.91 |
70.0 |
15 |
365.70 |
9.70 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
109529322 |
rs61696019,rs80014712 |
T |
TAA |
. |
PASS |
0.9281000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9806000 |
36.33 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109534940 |
rs337296 |
G |
A |
. |
PASS |
0.9312000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9814000 |
36.5 |
66.54 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109545046 |
rs184606 |
C |
T |
. |
PASS |
0.9312000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9814000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109633377 |
rs528661 |
C |
G |
. |
PASS |
0.2027000 |
0.0303000 |
0.0000000 |
0.0934000 |
0.0133000 |
0.0791000 |
36.08 |
70.0 |
27 |
413.12 |
19.94 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
109635398 |
rs512671 |
A |
G |
. |
PASS |
0.6135000 |
0.4207000 |
0.4683000 |
0.3340000 |
0.4632000 |
0.4720000 |
36.0 |
70.0 |
104 |
1000.00 |
3.21 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
109637229 |
rs551001 |
C |
G |
. |
PASS |
0.2670000 |
0.0951000 |
0.0308000 |
0.1730000 |
0.2188000 |
0.1673000 |
36.29 |
70.0 |
40 |
541.07 |
14.12 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
109649048 |
rs654458 |
T |
A |
. |
PASS |
0.6876000 |
0.4265000 |
0.4663000 |
0.3300000 |
0.4560000 |
0.4898000 |
37.0 |
70.0 |
10 |
267.44 |
0.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
109656142 |
rs141920812 |
ACTCGGATCAAC |
A |
. |
PASS |
0.2201000 |
0.0331000 |
0.0010000 |
0.0895000 |
0.0777000 |
0.0960000 |
37.0 |
70.0 |
10 |
91.94 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
109656946 |
rs667524 |
T |
C |
. |
PASS |
0.7511000 |
0.4841000 |
0.4812000 |
0.3718000 |
0.5133000 |
0.5371000 |
37.0 |
69.39 |
90 |
1000.00 |
2.02 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
109656981 |
rs586530 |
T |
C |
. |
PASS |
0.6672000 |
0.3602000 |
0.4167000 |
0.2127000 |
0.2045000 |
0.3926000 |
35.84 |
69.35 |
76 |
997.64 |
8.74 |
40.79 |
0 |
40.79 |
0/1 |
| chr1 |
109704390 |
rs643197 |
C |
G |
. |
PASS |
0.9448000 |
0.9957000 |
0.9990000 |
1.0000000 |
0.9284000 |
0.9706000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109704618 |
rs678238 |
A |
G |
. |
PASS |
0.9849000 |
0.9986000 |
0.9990000 |
1.0000000 |
1.0000000 |
0.9956000 |
36.57 |
70.0 |
139 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109714403 |
rs17014495 |
C |
A |
. |
PASS |
0.6974000 |
0.4452000 |
0.5079000 |
0.3897000 |
0.5061000 |
0.5252000 |
37.0 |
70.0 |
29 |
502.64 |
4.14 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
109714750 |
rs2297758 |
T |
C |
. |
PASS |
0.6989000 |
0.4438000 |
0.4901000 |
0.3897000 |
0.5092000 |
0.5224000 |
37.0 |
70.0 |
12 |
98.49 |
33.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
109734157 |
rs606066 |
T |
C |
. |
PASS |
0.4652000 |
0.8156000 |
0.9980000 |
0.7565000 |
0.8998000 |
0.7644000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109734541 |
rs645128 |
C |
T |
. |
PASS |
0.7110000 |
0.8804000 |
0.9980000 |
0.8529000 |
0.9765000 |
0.8726000 |
36.17 |
70.0 |
29 |
1000.00 |
4.19 |
96.55 |
0 |
100.00 |
1/1 |
| chr1 |
109735298 |
rs658779 |
T |
C |
. |
PASS |
0.3593000 |
0.8055000 |
0.9990000 |
0.7565000 |
0.9325000 |
0.7416000 |
36.54 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109735416 |
rs659543 |
A |
C |
. |
PASS |
0.3593000 |
0.8055000 |
0.9980000 |
0.7565000 |
0.9254000 |
0.7400000 |
36.73 |
70.0 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109735504 |
rs659659 |
T |
C |
. |
PASS |
0.3593000 |
0.8055000 |
0.9980000 |
0.7565000 |
0.9325000 |
0.7414000 |
36.48 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109737063 |
rs2359246 |
C |
T |
. |
PASS |
0.3033000 |
0.7968000 |
0.9702000 |
0.7634000 |
0.8937000 |
0.7137000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109737090 |
rs2359245 |
G |
A |
. |
PASS |
0.3101000 |
0.7954000 |
0.9702000 |
0.7634000 |
0.8937000 |
0.7153000 |
36.36 |
69.64 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109737132 |
rs2359244 |
T |
C |
. |
PASS |
0.4667000 |
0.8127000 |
0.9702000 |
0.7654000 |
0.9305000 |
0.7666000 |
37.0 |
69.67 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109737172 |
rs2359243 |
C |
T |
. |
PASS |
0.3048000 |
0.7968000 |
0.9702000 |
0.7634000 |
0.8937000 |
0.7141000 |
36.53 |
69.61 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109737314 |
rs2359242 |
T |
C |
. |
PASS |
0.2912000 |
0.7939000 |
0.9980000 |
0.7634000 |
0.8947000 |
0.7159000 |
34.82 |
70.0 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109737320 |
rs2359241 |
G |
A |
. |
PASS |
0.2905000 |
0.7939000 |
0.9980000 |
0.7634000 |
0.8947000 |
0.7157000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109740310 |
rs113482805 |
A |
AGAGAGAGTGTGT |
. |
PASS |
0.2171000 |
0.2392000 |
0.5020000 |
0.1590000 |
0.3487000 |
0.2915000 |
36.68 |
70.0 |
150 |
1000.00 |
0.79 |
31.33 |
0 |
46.00 |
0/1 |
| chr1 |
109740364 |
rs17014532 |
T |
G |
. |
PASS |
0.3056000 |
0.2723000 |
0.5308000 |
0.2465000 |
0.4223000 |
0.3572000 |
36.17 |
70.0 |
73 |
930.98 |
3.59 |
39.73 |
0 |
39.73 |
0/1 |
| chr1 |
109740548 |
rs2296696 |
G |
T |
. |
PASS |
0.2746000 |
0.2738000 |
0.5109000 |
0.2435000 |
0.4192000 |
0.3440000 |
37.0 |
70.0 |
12 |
219.66 |
9.52 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
109742452 |
rs913178 |
C |
T |
. |
PASS |
0.4675000 |
0.8055000 |
0.9593000 |
0.7893000 |
0.8763000 |
0.7578000 |
36.2 |
68.67 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109742485 |
rs913179 |
G |
A |
. |
PASS |
0.4713000 |
0.8055000 |
0.9593000 |
0.7893000 |
0.8763000 |
0.7588000 |
36.59 |
69.31 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109743622 |
rs3736956 |
C |
T |
. |
PASS |
0.0461000 |
0.5014000 |
0.4504000 |
0.5358000 |
0.4448000 |
0.3668000 |
37.0 |
70.0 |
15 |
381.85 |
14.55 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
109745618 |
rs1052878 |
T |
C |
. |
PASS |
0.7761000 |
0.9049000 |
0.9593000 |
0.8996000 |
0.9540000 |
0.8904000 |
37.0 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109771063 |
rs683182 |
T |
C |
. |
PASS |
0.3911000 |
0.8098000 |
0.8879000 |
0.7883000 |
0.6524000 |
0.6799000 |
36.04 |
70.0 |
81 |
1000.00 |
0.05 |
60.49 |
0 |
61.73 |
0/1 |
| chr1 |
109773690 |
rs55823508,rs72431616 |
AAT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.75 |
70.0 |
30 |
180.83 |
11.67 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
109773707 |
rs75028309 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
70.0 |
26 |
210.29 |
7.69 |
30.77 |
0 |
34.62 |
0/1 |
| chr1 |
109778577 |
rs658092 |
T |
C |
. |
PASS |
0.4259000 |
0.8127000 |
0.8879000 |
0.7873000 |
0.6524000 |
0.6893000 |
36.5 |
70.0 |
53 |
798.49 |
8.81 |
45.28 |
0 |
45.28 |
0/1 |
| chr1 |
109779530 |
rs72701097 |
C |
T |
. |
PASS |
0.0000000 |
0.0115000 |
0.0526000 |
0.0169000 |
0.0552000 |
0.0264000 |
37.0 |
70.0 |
34 |
449.98 |
5.04 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
109779556 |
rs631927 |
T |
A |
. |
PASS |
0.9576000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9886000 |
37.0 |
70.0 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109792735 |
rs59201433,rs10629280,rs144034706 |
A |
ACGC |
. |
PASS |
0.4198000 |
0.6311000 |
0.5298000 |
0.7276000 |
0.6002000 |
0.5683000 |
36.36 |
70.0 |
83 |
1000.00 |
5.18 |
56.63 |
0 |
56.63 |
0/1 |
| chr1 |
109794252 |
rs454107 |
T |
C |
. |
PASS |
0.7186000 |
0.9625000 |
0.9970000 |
0.9672000 |
0.9417000 |
0.9020000 |
36.74 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109795026 |
rs413380 |
T |
C |
. |
PASS |
0.7194000 |
0.9611000 |
0.9970000 |
0.9672000 |
0.9417000 |
0.9020000 |
36.54 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109795608 |
rs437444 |
T |
C |
. |
PASS |
0.7648000 |
0.9654000 |
0.9970000 |
0.9662000 |
0.9417000 |
0.9143000 |
37.0 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109796053 |
rs2359414 |
C |
T |
. |
PASS |
0.2753000 |
0.2522000 |
0.4504000 |
0.2416000 |
0.2904000 |
0.3035000 |
36.14 |
70.0 |
31 |
446.99 |
7.37 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
109804883 |
rs66795935 |
C |
G |
. |
PASS |
0.0855000 |
0.0418000 |
0.0020000 |
0.0775000 |
0.0685000 |
0.0577000 |
36.57 |
70.0 |
56 |
952.38 |
3.57 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
109807283 |
rs6657811 |
A |
T |
. |
PASS |
0.1241000 |
0.0576000 |
0.0050000 |
0.1113000 |
0.0982000 |
0.0833000 |
37.0 |
70.0 |
69 |
1000.00 |
4.93 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
109810199 |
. |
AGG |
AAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
70.0 |
78 |
893.36 |
1.14 |
34.62 |
0 |
34.62 |
0/1 |
| chr1 |
109810544 |
rs2281894 |
C |
A |
. |
PASS |
0.0537000 |
0.2205000 |
0.4206000 |
0.1928000 |
0.2955000 |
0.2258000 |
36.41 |
70.0 |
82 |
1000.00 |
12.20 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
109813510 |
rs41279716 |
A |
T |
. |
PASS |
0.0734000 |
0.0793000 |
0.0546000 |
0.1849000 |
0.2096000 |
0.1194000 |
37.0 |
70.0 |
16 |
207.61 |
5.36 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
109813719 |
rs17035665 |
C |
T |
. |
PASS |
0.2247000 |
0.0965000 |
0.0556000 |
0.1829000 |
0.2076000 |
0.1611000 |
37.0 |
70.0 |
42 |
592.98 |
17.46 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
109814880 |
rs4970834 |
C |
T |
. |
PASS |
0.3003000 |
0.1124000 |
0.0367000 |
0.1859000 |
0.1646000 |
0.1717000 |
37.0 |
70.0 |
36 |
443.97 |
16.67 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
109815252 |
rs611917 |
A |
G |
. |
PASS |
0.3154000 |
0.2651000 |
0.0437000 |
0.3131000 |
0.2730000 |
0.2450000 |
36.65 |
70.0 |
54 |
1000.00 |
2.83 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
109816176 |
rs441853 |
A |
C |
. |
PASS |
0.8926000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9698000 |
36.61 |
69.67 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109825360 |
rs643457 |
C |
T |
. |
PASS |
0.8979000 |
0.9856000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9710000 |
36.39 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109836835 |
rs3738777 |
A |
G |
. |
PASS |
0.0930000 |
0.3501000 |
0.4732000 |
0.3211000 |
0.4673000 |
0.3241000 |
36.54 |
70.0 |
64 |
848.91 |
0.24 |
40.62 |
0 |
40.62 |
0/1 |
| chr1 |
109837853 |
rs72703216 |
G |
A |
. |
PASS |
0.0000000 |
0.0058000 |
0.0000000 |
0.0139000 |
0.0061000 |
0.0047923 |
36.25 |
70.0 |
54 |
461.32 |
16.20 |
29.63 |
0 |
29.63 |
0/1 |
| chr1 |
109838833 |
rs616899 |
T |
C |
. |
PASS |
0.8767000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9657000 |
36.79 |
70.0 |
168 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109838918 |
rs629001 |
C |
T |
. |
PASS |
0.6558000 |
0.9452000 |
1.0000000 |
0.9284000 |
0.9356000 |
0.8746000 |
36.27 |
70.0 |
151 |
1000.00 |
1.57 |
54.30 |
0 |
54.30 |
0/1 |
| chr1 |
109839392 |
rs604349 |
A |
G |
. |
PASS |
0.2663000 |
0.8977000 |
0.9722000 |
0.9046000 |
0.9264000 |
0.7530000 |
37.0 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109839433 |
rs1278285 |
A |
G |
. |
PASS |
0.7330000 |
0.9697000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9253000 |
36.62 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109839738 |
rs3850615 |
C |
A |
. |
PASS |
0.2867000 |
0.0576000 |
0.0694000 |
0.0835000 |
0.1329000 |
0.1404000 |
36.74 |
70.0 |
97 |
1000.00 |
2.87 |
47.42 |
0 |
47.42 |
0/1 |
| chr1 |
109839954 |
rs603624 |
G |
C |
. |
PASS |
0.6241000 |
0.7911000 |
0.6855000 |
0.8260000 |
0.7883000 |
0.7322000 |
37.0 |
68.46 |
24 |
434.15 |
23.08 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
109883576 |
rs3217347 |
C |
CAT |
. |
PASS |
0.5605000 |
0.8415000 |
0.9563000 |
0.7137000 |
0.7178000 |
0.7406000 |
35.0 |
70.0 |
11 |
371.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109884775 |
rs2228604 |
T |
G |
. |
PASS |
0.3593000 |
0.8271000 |
0.9563000 |
0.7127000 |
0.7188000 |
0.6855000 |
36.75 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109897103 |
rs11142 |
A |
G |
. |
PASS |
0.6884000 |
0.8530000 |
0.9563000 |
0.7147000 |
0.7188000 |
0.7764000 |
36.39 |
70.0 |
99 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109912051 |
rs17646665 |
A |
G |
. |
PASS |
0.0756000 |
0.0620000 |
0.0238000 |
0.0527000 |
0.0358000 |
0.0509000 |
37.0 |
70.0 |
13 |
304.33 |
11.97 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
109954179 |
rs33980057 |
C |
CAT |
. |
PASS |
0.5174000 |
0.5937000 |
0.6429000 |
0.5527000 |
0.4908000 |
0.5551000 |
36.76 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109954355 |
rs11102979 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
109958035 |
rs1465607 |
T |
C |
. |
PASS |
0.5787000 |
0.8429000 |
0.9563000 |
0.7147000 |
0.7188000 |
0.7460000 |
36.64 |
69.39 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110009434 |
rs2787015 |
A |
C |
. |
PASS |
0.5991000 |
0.8487000 |
0.9633000 |
0.6899000 |
0.7137000 |
0.7476000 |
36.44 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110009654 |
rs138525393 |
AC |
A |
. |
PASS |
0.3820000 |
0.8271000 |
0.9633000 |
0.6889000 |
0.7137000 |
0.6871000 |
36.45 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110009802 |
rs2272272 |
G |
A |
. |
PASS |
0.0764000 |
0.0634000 |
0.0228000 |
0.0517000 |
0.0348000 |
0.0507000 |
36.54 |
70.0 |
39 |
924.16 |
2.56 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
110018148 |
rs530565 |
C |
T |
. |
PASS |
0.9992000 |
0.9942000 |
1.0000000 |
0.9771000 |
0.9969000 |
0.9938000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110037709 |
rs45448998 |
C |
T |
. |
PASS |
0.0038000 |
0.0519000 |
0.0010000 |
0.0765000 |
0.0491000 |
0.0333000 |
37.0 |
69.29 |
44 |
1000.00 |
5.19 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
110091282 |
rs1279195 |
C |
T |
. |
PASS |
0.1702000 |
0.1023000 |
0.0228000 |
0.0865000 |
0.1370000 |
0.1078000 |
37.0 |
70.0 |
14 |
259.55 |
21.43 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
110134183 |
rs55773147 |
C |
T |
. |
PASS |
0.0401000 |
0.0908000 |
0.0218000 |
0.0815000 |
0.0654000 |
0.0567000 |
34.6 |
70.0 |
17 |
113.20 |
9.41 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
110152598 |
rs59856858 |
TG |
T |
. |
PASS |
0.0038000 |
0.0389000 |
0.0000000 |
0.0616000 |
0.0348000 |
0.0256000 |
35.92 |
70.0 |
33 |
346.87 |
34.85 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
110168888 |
rs493972 |
C |
G |
. |
PASS |
0.7330000 |
0.7695000 |
0.9802000 |
0.6620000 |
0.8916000 |
0.8045000 |
36.84 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110169957 |
rs524998 |
A |
G |
. |
PASS |
0.8865000 |
0.7867000 |
0.9812000 |
0.6769000 |
0.8906000 |
0.8504000 |
36.66 |
69.63 |
107 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110170896 |
rs863978 |
T |
C |
. |
PASS |
0.7337000 |
0.7695000 |
0.9802000 |
0.6769000 |
0.8916000 |
0.8077000 |
36.92 |
69.87 |
156 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110171525 |
rs560674 |
C |
G |
. |
PASS |
0.1241000 |
0.1282000 |
0.0446000 |
0.1710000 |
0.1636000 |
0.1258000 |
37.0 |
70.0 |
14 |
171.87 |
9.52 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
110171705 |
rs523786 |
A |
C |
. |
PASS |
0.8132000 |
0.7795000 |
0.9802000 |
0.6779000 |
0.8916000 |
0.8303000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110172346 |
rs5776989 |
T |
TG |
. |
PASS |
0.8858000 |
0.7867000 |
0.9802000 |
0.6759000 |
0.8916000 |
0.8500000 |
37.0 |
70.0 |
16 |
488.56 |
7.14 |
87.50 |
0 |
87.50 |
0/1 |
| chr1 |
110172362 |
rs2269341 |
C |
T |
. |
PASS |
0.1203000 |
0.5447000 |
0.5119000 |
0.4145000 |
0.3579000 |
0.3634000 |
36.14 |
70.0 |
20 |
480.11 |
1.43 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
110173100 |
. |
C |
G |
. |
PASS |
0.2504000 |
0.0951000 |
0.0496000 |
0.0825000 |
0.3262000 |
0.1695000 |
37.0 |
70.0 |
15 |
85.31 |
120.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
110173103 |
. |
T |
G |
. |
PASS |
0.2504000 |
0.0951000 |
0.0496000 |
0.0825000 |
0.3262000 |
0.1695000 |
28.0 |
70.0 |
12 |
58.32 |
133.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
110173775 |
rs568686 |
G |
T |
. |
PASS |
0.1233000 |
0.1282000 |
0.0446000 |
0.1720000 |
0.1636000 |
0.1258000 |
36.14 |
70.0 |
88 |
1000.00 |
0.87 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
110194255 |
rs686163 |
A |
G |
. |
PASS |
0.5628000 |
0.7176000 |
0.6726000 |
0.5895000 |
0.5542000 |
0.6100000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110201580 |
rs650985 |
C |
T |
. |
PASS |
0.9932000 |
0.9625000 |
1.0000000 |
0.9513000 |
0.9816000 |
0.9796000 |
36.62 |
70.0 |
69 |
1000.00 |
1.45 |
46.38 |
0 |
46.38 |
0/1 |
| chr1 |
110201699 |
rs506008 |
T |
C |
. |
PASS |
0.5681000 |
0.8732000 |
0.9702000 |
0.8598000 |
0.8517000 |
0.8053000 |
37.0 |
65.72 |
172 |
1000.00 |
1.38 |
47.09 |
0 |
47.09 |
0/1 |
| chr1 |
110201809 |
rs562996 |
G |
T |
. |
PASS |
0.8177000 |
0.8963000 |
0.9692000 |
0.8598000 |
0.8507000 |
0.8740000 |
37.0 |
69.83 |
49 |
818.39 |
7.31 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
110201812 |
rs563003 |
A |
G |
. |
PASS |
0.8177000 |
0.8963000 |
0.9692000 |
0.8598000 |
0.8507000 |
0.8740000 |
36.04 |
69.84 |
49 |
840.28 |
5.06 |
51.02 |
0 |
51.02 |
0/1 |
| chr1 |
110210780 |
rs530021 |
C |
G |
. |
PASS |
0.8949000 |
0.9380000 |
0.9702000 |
0.8976000 |
0.8344000 |
0.9048000 |
36.57 |
69.98 |
111 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110210818 |
rs2073483 |
C |
T |
. |
PASS |
0.1460000 |
0.5663000 |
0.6528000 |
0.3897000 |
0.3978000 |
0.4044000 |
33.7 |
70.0 |
68 |
1000.00 |
7.94 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
110211681 |
rs28623664 |
G |
C |
. |
PASS |
0.8026000 |
0.3746000 |
0.3194000 |
0.5249000 |
0.4928000 |
0.5298000 |
37.0 |
63.25 |
72 |
80.83 |
33.33 |
11.11 |
0 |
11.11 |
0/1 |
| chr1 |
110211835 |
rs402505 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.6 |
19 |
119.19 |
6.32 |
26.32 |
0 |
26.32 |
0/1 |
| chr1 |
110212293 |
rs3819350 |
C |
A |
. |
PASS |
0.1097000 |
0.5447000 |
0.6498000 |
0.3489000 |
0.3405000 |
0.3718000 |
37.0 |
70.0 |
12 |
219.65 |
0.00 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
110230767 |
rs10857795 |
G |
A |
. |
PASS |
0.8071000 |
0.9438000 |
0.9960000 |
0.9026000 |
0.8630000 |
0.8942000 |
36.6 |
69.22 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110231516 |
rs375176458 |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
11 |
408.43 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110231592 |
rs737497 |
T |
C |
. |
PASS |
0.1445000 |
0.3790000 |
0.5347000 |
0.3310000 |
0.2474000 |
0.3131000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110231777 |
rs4147565 |
G |
A |
. |
PASS |
0.0333000 |
0.2795000 |
0.5079000 |
0.2972000 |
0.2290000 |
0.2542000 |
36.16 |
69.98 |
114 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110233138 |
rs74837985 |
G |
C |
. |
PASS |
0.1445000 |
0.5865000 |
0.7778000 |
0.5427000 |
0.3926000 |
0.4617000 |
36.71 |
68.28 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110233247 |
rs11101983 |
T |
C |
. |
PASS |
0.6324000 |
0.9251000 |
0.9891000 |
0.8837000 |
0.7761000 |
0.8233000 |
37.0 |
67.58 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110255174 |
rs929166 |
T |
G |
. |
PASS |
0.1225000 |
0.4380000 |
0.6865000 |
0.2793000 |
0.3384000 |
0.3534000 |
35.8 |
70.0 |
43 |
645.34 |
0.47 |
46.51 |
0 |
46.51 |
0/1 |
| chr1 |
110255596 |
rs4970773 |
C |
G |
. |
PASS |
0.0121000 |
0.4222000 |
0.6875000 |
0.2714000 |
0.3405000 |
0.3211000 |
35.5 |
69.62 |
13 |
246.40 |
9.62 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
110279701 |
rs7483 |
C |
T |
. |
PASS |
0.0628000 |
0.4035000 |
0.7252000 |
0.2962000 |
0.4233000 |
0.3606000 |
37.0 |
70.0 |
77 |
1000.00 |
1.19 |
48.05 |
0 |
48.05 |
0/1 |
| chr1 |
110279821 |
rs1537234 |
C |
A |
. |
PASS |
0.1589000 |
0.5216000 |
0.8611000 |
0.4135000 |
0.5951000 |
0.4868000 |
35.91 |
70.0 |
15 |
365.69 |
14.55 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
110281941 |
rs10735234 |
G |
A |
. |
PASS |
0.8835000 |
0.6599000 |
0.8601000 |
0.5547000 |
0.7127000 |
0.7484000 |
37.0 |
70.0 |
12 |
140.26 |
0.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
110282972 |
rs1332018 |
G |
T |
. |
PASS |
0.8638000 |
0.6556000 |
0.8611000 |
0.5507000 |
0.7096000 |
0.7414000 |
35.4 |
70.0 |
31 |
472.61 |
3.01 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
110292856 |
rs15864 |
G |
C |
. |
PASS |
0.0182000 |
0.3919000 |
0.7440000 |
0.3002000 |
0.4029000 |
0.3478000 |
37.0 |
70.0 |
15 |
127.08 |
26.67 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
110295772 |
rs1887547 |
T |
C |
. |
PASS |
0.9123000 |
0.6816000 |
0.8601000 |
0.5795000 |
0.7444000 |
0.7702000 |
36.66 |
70.0 |
68 |
1000.00 |
11.68 |
51.47 |
0 |
51.47 |
0/1 |
| chr1 |
110295890 |
rs1887548 |
C |
G |
. |
PASS |
0.9062000 |
0.6787000 |
0.8591000 |
0.5746000 |
0.7454000 |
0.7672000 |
36.14 |
70.0 |
18 |
481.98 |
1.59 |
77.78 |
0 |
77.78 |
0/1 |
| chr1 |
110300441 |
rs3818562 |
G |
A |
. |
PASS |
0.1596000 |
0.4366000 |
0.7907000 |
0.4712000 |
0.5982000 |
0.4732000 |
36.6 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110300504 |
rs10776700 |
A |
G |
. |
PASS |
1.0000000 |
0.9885000 |
1.0000000 |
0.9712000 |
0.9990000 |
0.9924000 |
36.5 |
70.0 |
120 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110301766 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.71 |
70.0 |
46 |
1000.00 |
0.12 |
76.09 |
1 |
76.09 |
0/1 |
| chr1 |
110301766 |
. |
AGTGTGT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.91 |
70.0 |
48 |
227.93 |
9.09 |
22.92 |
1 |
75.00 |
0/1 |
| chr1 |
110301766 |
. |
AGTGTGT |
AGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
48 |
227.93 |
5.88 |
35.42 |
1 |
75.00 |
0/1 |
| chr1 |
110301767 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.71 |
70.0 |
46 |
1000.00 |
0.12 |
76.09 |
1 |
76.09 |
0/1 |
| chr1 |
110466338 |
rs333970 |
C |
A |
. |
PASS |
0.1067000 |
0.5749000 |
0.4018000 |
0.6213000 |
0.5971000 |
0.4301000 |
36.78 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110466709 |
rs333971 |
T |
C |
. |
PASS |
0.9887000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9968000 |
36.56 |
70.0 |
108 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110467745 |
rs333972 |
A |
G |
. |
PASS |
0.9887000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9968000 |
36.66 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110581780 |
rs1834 |
T |
G |
. |
PASS |
0.1921000 |
0.3357000 |
0.3403000 |
0.1759000 |
0.4959000 |
0.2979000 |
37.0 |
68.33 |
34 |
362.28 |
17.65 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
110583335 |
rs72687299 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
69.09 |
63 |
696.85 |
0.72 |
34.92 |
0 |
34.92 |
0/1 |
| chr1 |
110612925 |
rs2274568 |
G |
A |
. |
PASS |
0.7413000 |
0.6527000 |
0.7679000 |
0.5527000 |
0.7249000 |
0.6933000 |
36.14 |
70.0 |
51 |
959.58 |
7.00 |
54.90 |
0 |
54.90 |
0/1 |
| chr1 |
110709718 |
rs35600013 |
ATG |
ACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.71 |
70.0 |
54 |
947.60 |
3.70 |
51.85 |
1 |
53.70 |
0/1 |
| chr1 |
110709719 |
rs7527375 |
T |
C |
. |
PASS |
0.4652000 |
0.3530000 |
0.2143000 |
0.5249000 |
0.3722000 |
0.3930000 |
36.14 |
70.0 |
46 |
974.63 |
4.35 |
60.87 |
1 |
60.87 |
0/1 |
| chr1 |
110709720 |
rs12737742 |
G |
A |
. |
PASS |
0.0333000 |
0.2608000 |
0.2143000 |
0.4652000 |
0.3517000 |
0.2502000 |
35.29 |
70.0 |
47 |
947.60 |
3.50 |
59.57 |
1 |
59.57 |
0/1 |
| chr1 |
110738296 |
rs2784140 |
G |
A |
. |
PASS |
0.0439000 |
0.3847000 |
0.3016000 |
0.4543000 |
0.3732000 |
0.2897000 |
36.52 |
70.0 |
101 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110740273 |
rs2603581 |
G |
T |
. |
PASS |
0.1399000 |
0.3934000 |
0.3056000 |
0.4513000 |
0.3732000 |
0.3165000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110740688 |
rs2761445 |
C |
T |
. |
PASS |
0.1399000 |
0.4020000 |
0.3056000 |
0.4583000 |
0.3753000 |
0.3195000 |
37.0 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110882444 |
rs814771 |
A |
G |
. |
PASS |
0.9516000 |
0.8545000 |
0.7738000 |
0.6879000 |
0.8160000 |
0.8229000 |
36.47 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110924235 |
rs12120542 |
T |
C |
. |
PASS |
0.0053000 |
0.1066000 |
0.0000000 |
0.1083000 |
0.0266000 |
0.0431000 |
36.17 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
110930441 |
rs111878697 |
T |
TTTCTAGGGGGAAAATGAGATTCCCCTAAAATAACATA |
. |
PASS |
0.6127000 |
0.6700000 |
0.5139000 |
0.5209000 |
0.5327000 |
0.5667000 |
36.45 |
70.0 |
25 |
962.17 |
8.35 |
92.00 |
0 |
100.00 |
1/1 |
| chr1 |
110950439 |
rs6674775 |
C |
T |
. |
PASS |
0.3056000 |
0.3790000 |
0.2758000 |
0.4453000 |
0.4366000 |
0.3634000 |
35.81 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111059812 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
91.94 |
45.45 |
36.36 |
1 |
36.36 |
0/1 |
| chr1 |
111059812 |
rs368922210 |
CGA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
88.93 |
38.46 |
30.77 |
1 |
30.77 |
0/1 |
| chr1 |
111060669 |
rs1281175 |
T |
C |
. |
PASS |
0.5144000 |
0.7839000 |
0.5853000 |
0.7336000 |
0.5869000 |
0.6242000 |
36.56 |
70.0 |
57 |
911.76 |
2.34 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
111061062 |
rs1281174 |
T |
C |
. |
PASS |
0.5144000 |
0.7839000 |
0.5853000 |
0.7336000 |
0.5869000 |
0.6242000 |
36.52 |
69.2 |
57 |
828.23 |
14.74 |
43.86 |
0 |
43.86 |
0/1 |
| chr1 |
111136611 |
rs17026168 |
G |
A |
. |
PASS |
0.0537000 |
0.2147000 |
0.4792000 |
0.0696000 |
0.2004000 |
0.1935000 |
37.0 |
70.0 |
18 |
414.59 |
16.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
111144526 |
rs4839071 |
T |
G |
. |
PASS |
0.9962000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9988000 |
35.91 |
70.0 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111144661 |
rs12407942 |
A |
G |
. |
PASS |
0.1377000 |
0.3473000 |
0.3879000 |
0.0706000 |
0.1994000 |
0.2157000 |
37.0 |
69.35 |
62 |
1000.00 |
3.23 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
111276576 |
rs343613 |
C |
T |
. |
PASS |
0.4894000 |
0.5476000 |
0.3750000 |
0.5179000 |
0.5266000 |
0.4874000 |
35.15 |
70.0 |
106 |
1000.00 |
13.79 |
49.06 |
0 |
49.06 |
0/1 |
| chr1 |
111276629 |
rs343614 |
G |
A |
. |
PASS |
0.4380000 |
0.5432000 |
0.3720000 |
0.5179000 |
0.5266000 |
0.4726000 |
35.8 |
70.0 |
115 |
1000.00 |
1.01 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
111391381 |
rs6685507 |
A |
G |
. |
PASS |
0.1725000 |
0.2997000 |
0.1161000 |
0.2843000 |
0.3006000 |
0.2262000 |
36.52 |
69.0 |
39 |
882.39 |
14.56 |
64.10 |
0 |
64.10 |
0/1 |
| chr1 |
111391513 |
rs12750061 |
C |
T |
. |
PASS |
0.1059000 |
0.2968000 |
0.1181000 |
0.2843000 |
0.2996000 |
0.2085000 |
36.57 |
69.93 |
48 |
980.61 |
0.60 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
111391579 |
rs12731526 |
A |
G |
. |
PASS |
0.1074000 |
0.2968000 |
0.1161000 |
0.2843000 |
0.3006000 |
0.2087000 |
36.37 |
69.89 |
36 |
640.80 |
14.62 |
52.78 |
0 |
52.78 |
0/1 |
| chr1 |
111436856 |
rs71483878 |
CTC |
CGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
104.51 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
111441829 |
rs1803259 |
C |
T |
. |
PASS |
0.3169000 |
0.7349000 |
0.5010000 |
0.7614000 |
0.6012000 |
0.5567000 |
36.31 |
70.0 |
60 |
1000.00 |
10.48 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
111661413 |
rs325916 |
T |
C |
. |
PASS |
0.6407000 |
0.4193000 |
0.2827000 |
0.3827000 |
0.5910000 |
0.4764000 |
35.15 |
70.0 |
75 |
779.79 |
9.03 |
34.67 |
0 |
34.67 |
0/1 |
| chr1 |
111661528 |
rs325917 |
T |
C |
. |
PASS |
0.4682000 |
0.2536000 |
0.2808000 |
0.1521000 |
0.4233000 |
0.3285000 |
36.25 |
70.0 |
52 |
1000.00 |
1.92 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
111726026 |
rs2243393 |
G |
A |
. |
PASS |
0.6120000 |
0.5980000 |
0.3105000 |
0.3588000 |
0.5593000 |
0.4882000 |
37.0 |
70.0 |
17 |
334.06 |
12.94 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
111726213 |
rs694180 |
A |
G |
. |
PASS |
0.8548000 |
0.7954000 |
0.6458000 |
0.6431000 |
0.8190000 |
0.7550000 |
36.61 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111726288 |
rs2275122 |
T |
G |
. |
PASS |
0.0794000 |
0.3545000 |
0.1349000 |
0.0934000 |
0.3425000 |
0.1829000 |
37.0 |
70.0 |
10 |
100.36 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
111726869 |
rs3795823 |
G |
A |
. |
PASS |
0.0257000 |
0.1787000 |
0.3294000 |
0.2823000 |
0.1779000 |
0.1893000 |
36.5 |
70.0 |
67 |
756.34 |
3.86 |
35.82 |
0 |
35.82 |
0/1 |
| chr1 |
111737183 |
rs660173 |
C |
T |
. |
PASS |
0.8457000 |
0.8026000 |
0.6597000 |
0.6680000 |
0.8528000 |
0.7680000 |
36.73 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111737398 |
rs9970286 |
G |
A |
. |
PASS |
0.3071000 |
0.2248000 |
0.3760000 |
0.3429000 |
0.2413000 |
0.3039000 |
37.0 |
70.0 |
14 |
217.78 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
111739771 |
rs6143371,rs3833538 |
G |
GCAGGACAAA |
. |
PASS |
0.7224000 |
0.6383000 |
0.5853000 |
0.4225000 |
0.6063000 |
0.6002000 |
36.68 |
70.0 |
65 |
1000.00 |
1.73 |
98.46 |
0 |
100.00 |
1/1 |
| chr1 |
111741322 |
rs35184750 |
G |
A |
. |
PASS |
0.0000000 |
0.0130000 |
0.0000000 |
0.0209000 |
0.0031000 |
0.0065895 |
36.66 |
70.0 |
131 |
1000.00 |
0.02 |
53.44 |
0 |
53.44 |
0/1 |
| chr1 |
111770423 |
rs755467 |
T |
G |
. |
PASS |
0.6657000 |
0.6830000 |
0.6716000 |
0.6978000 |
0.7434000 |
0.6909000 |
35.94 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111773568 |
rs2255089 |
G |
C |
. |
PASS |
0.2542000 |
0.3329000 |
0.5575000 |
0.4513000 |
0.4550000 |
0.4050000 |
35.36 |
70.0 |
40 |
725.91 |
6.36 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
111773830 |
rs2147789 |
A |
T |
. |
PASS |
0.2806000 |
0.3343000 |
0.5565000 |
0.4513000 |
0.4519000 |
0.4113000 |
37.0 |
67.78 |
20 |
279.11 |
11.11 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
111778187 |
rs2251715 |
A |
G |
. |
PASS |
0.0772000 |
0.2997000 |
0.5585000 |
0.4225000 |
0.4213000 |
0.3415000 |
37.0 |
70.0 |
11 |
101.50 |
36.36 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
111778241 |
rs2764544 |
C |
T |
. |
PASS |
0.8608000 |
0.9870000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9613000 |
35.45 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111778824 |
rs2251608 |
T |
C |
. |
PASS |
0.5287000 |
0.6628000 |
0.6756000 |
0.6740000 |
0.7382000 |
0.6470000 |
34.75 |
68.75 |
16 |
596.81 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111783982 |
rs13721 |
C |
A |
. |
PASS |
0.0507000 |
0.2493000 |
0.1974000 |
0.3330000 |
0.2372000 |
0.1903000 |
36.59 |
70.0 |
58 |
1000.00 |
0.75 |
63.79 |
0 |
100.00 |
0/1 |
| chr1 |
111783982 |
rs13721 |
C |
T |
. |
PASS |
0.0507000 |
0.2493000 |
0.1974000 |
0.3330000 |
0.2372000 |
0.1903000 |
36.59 |
70.0 |
58 |
1000.00 |
1.31 |
36.21 |
0 |
100.00 |
0/1 |
| chr1 |
111783996 |
rs2494007 |
A |
G |
. |
PASS |
0.9977000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9994000 |
37.0 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111784138 |
rs942694 |
T |
C |
. |
PASS |
0.0507000 |
0.1744000 |
0.1974000 |
0.3330000 |
0.2372000 |
0.1905000 |
37.0 |
70.0 |
12 |
140.27 |
10.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
111784816 |
rs11102221 |
G |
A |
. |
PASS |
0.3699000 |
0.3429000 |
0.1171000 |
0.2425000 |
0.3180000 |
0.2796000 |
36.65 |
70.0 |
87 |
1000.00 |
5.00 |
39.08 |
0 |
39.08 |
0/1 |
| chr1 |
111826055 |
rs12140873 |
A |
G |
. |
PASS |
0.0946000 |
0.1196000 |
0.0179000 |
0.2038000 |
0.1513000 |
0.1156000 |
36.2 |
63.07 |
36 |
473.72 |
1.11 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
111853174 |
rs56387509 |
C |
T |
. |
PASS |
0.0234000 |
0.0677000 |
0.0228000 |
0.1382000 |
0.0900000 |
0.0655000 |
36.14 |
68.57 |
17 |
489.14 |
3.36 |
82.35 |
0 |
82.35 |
0/1 |
| chr1 |
111854207 |
rs4839122 |
T |
C |
. |
PASS |
0.5522000 |
0.8084000 |
0.8442000 |
0.6829000 |
0.6237000 |
0.6867000 |
37.0 |
70.0 |
10 |
271.59 |
10.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
111854223 |
rs6537695 |
C |
T |
. |
PASS |
0.3381000 |
0.7262000 |
0.8442000 |
0.5736000 |
0.5266000 |
0.5779000 |
37.0 |
70.0 |
10 |
271.59 |
15.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
111854755 |
rs4423003 |
A |
C |
. |
PASS |
0.8525000 |
0.9798000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9581000 |
36.14 |
70.0 |
14 |
533.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111857154 |
rs2786152 |
T |
C |
. |
PASS |
0.7867000 |
0.4236000 |
0.4772000 |
0.7097000 |
0.7720000 |
0.6558000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111857276 |
rs41391244 |
T |
C |
. |
PASS |
0.2201000 |
0.1484000 |
0.1161000 |
0.2366000 |
0.2372000 |
0.1959000 |
37.0 |
70.0 |
33 |
536.52 |
2.65 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
111857951 |
rs61756687 |
A |
G |
. |
PASS |
0.0234000 |
0.0677000 |
0.0228000 |
0.1382000 |
0.0930000 |
0.0661000 |
36.77 |
69.42 |
108 |
1000.00 |
1.82 |
49.07 |
0 |
49.07 |
0/1 |
| chr1 |
111861714 |
rs2786161 |
T |
A |
. |
PASS |
0.6929000 |
0.4135000 |
0.4732000 |
0.6948000 |
0.7607000 |
0.6236000 |
35.8 |
70.0 |
20 |
771.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111861841 |
rs2275253 |
A |
G |
. |
PASS |
0.7958000 |
0.4251000 |
0.4802000 |
0.7107000 |
0.7720000 |
0.6591000 |
36.32 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111861974 |
rs2275254 |
T |
C |
. |
PASS |
0.3154000 |
0.3098000 |
0.3800000 |
0.5954000 |
0.6145000 |
0.4423000 |
36.5 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
111862952 |
rs2256721 |
T |
G |
. |
PASS |
0.7897000 |
0.4236000 |
0.4812000 |
0.7097000 |
0.7720000 |
0.6573000 |
36.55 |
69.75 |
82 |
1000.00 |
0.12 |
97.56 |
0 |
97.56 |
1/1 |
| chr1 |
111866640 |
rs6690266 |
C |
A |
. |
PASS |
0.0923000 |
0.1902000 |
0.3780000 |
0.4016000 |
0.4407000 |
0.2935000 |
37.0 |
69.82 |
46 |
743.88 |
8.70 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
111890240 |
rs142260201 |
C |
CT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
30 |
154.08 |
44.76 |
23.33 |
0 |
23.33 |
0/1 |
| chr1 |
111890244 |
rs3738305 |
C |
T |
. |
PASS |
0.7088000 |
0.3329000 |
0.5377000 |
0.4672000 |
0.6002000 |
0.5525000 |
37.0 |
70.0 |
26 |
229.48 |
11.54 |
30.77 |
0 |
38.46 |
0/1 |
| chr1 |
111931251 |
rs7513731 |
C |
A |
. |
PASS |
0.4939000 |
0.6110000 |
0.4177000 |
0.4284000 |
0.3855000 |
0.4605000 |
36.27 |
70.0 |
105 |
1000.00 |
3.54 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
112020222 |
rs3831358 |
GC |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0001997 |
35.42 |
69.35 |
32 |
1000.00 |
1.81 |
96.88 |
1 |
96.88 |
1/1 |
| chr1 |
112020222 |
. |
GCC |
GA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
31 |
1000.00 |
1.72 |
96.77 |
1 |
96.77 |
1/1 |
| chr1 |
112020224 |
rs115634476 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.76 |
69.31 |
30 |
1000.00 |
1.84 |
96.67 |
1 |
96.67 |
1/1 |
| chr1 |
112020238 |
rs2211494 |
A |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.16 |
69.53 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112029193 |
rs2252739 |
A |
G |
. |
PASS |
0.7405000 |
0.8631000 |
0.7887000 |
0.8400000 |
0.7587000 |
0.7907000 |
36.56 |
69.63 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112029325 |
rs2800906 |
A |
G |
. |
PASS |
0.7368000 |
0.8588000 |
0.7887000 |
0.8360000 |
0.7566000 |
0.7879000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112033456 |
rs3831359 |
G |
GA |
. |
PASS |
0.2965000 |
0.7277000 |
0.5139000 |
0.6312000 |
0.5348000 |
0.5138000 |
36.14 |
70.0 |
11 |
396.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112042632 |
rs2229155 |
A |
G |
. |
PASS |
0.7352000 |
0.8602000 |
0.7579000 |
0.8340000 |
0.7178000 |
0.7736000 |
36.82 |
70.0 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112106444 |
rs1591712 |
G |
A |
. |
PASS |
0.8230000 |
0.9222000 |
0.9474000 |
0.9115000 |
0.9008000 |
0.8948000 |
37.0 |
70.0 |
42 |
885.37 |
0.76 |
59.52 |
0 |
59.52 |
0/1 |
| chr1 |
112263216 |
rs6698691 |
G |
A |
. |
PASS |
0.3820000 |
0.4207000 |
0.4325000 |
0.4791000 |
0.5010000 |
0.4403000 |
36.78 |
70.0 |
122 |
1000.00 |
4.49 |
44.26 |
0 |
44.26 |
0/1 |
| chr1 |
112269872 |
rs197434 |
G |
A |
. |
PASS |
0.9607000 |
0.7464000 |
0.8254000 |
0.8191000 |
0.8855000 |
0.8606000 |
36.51 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112298582 |
rs197392 |
A |
G |
. |
PASS |
0.5666000 |
0.1470000 |
0.0367000 |
0.1978000 |
0.1299000 |
0.2424000 |
36.61 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112298829 |
rs197393 |
T |
C |
. |
PASS |
0.7254000 |
0.5014000 |
0.3403000 |
0.4105000 |
0.3088000 |
0.4722000 |
35.63 |
69.24 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112302219 |
rs538779 |
G |
A |
. |
PASS |
0.1135000 |
0.2622000 |
0.2143000 |
0.2227000 |
0.1728000 |
0.1879000 |
37.0 |
70.0 |
43 |
548.19 |
0.82 |
39.53 |
0 |
39.53 |
0/1 |
| chr1 |
112303260 |
rs169093 |
A |
G |
. |
PASS |
0.3064000 |
0.0821000 |
0.0030000 |
0.1173000 |
0.0706000 |
0.1302000 |
37.0 |
70.0 |
54 |
932.79 |
3.70 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
112308953 |
rs197412 |
T |
C |
. |
PASS |
0.7247000 |
0.5072000 |
0.3403000 |
0.4185000 |
0.3088000 |
0.4744000 |
36.05 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112308972 |
rs197413 |
G |
A |
. |
PASS |
0.7428000 |
0.5115000 |
0.3403000 |
0.4185000 |
0.3088000 |
0.4798000 |
36.41 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112309123 |
rs197414 |
C |
A |
. |
PASS |
0.4274000 |
0.0965000 |
0.0030000 |
0.1252000 |
0.0716000 |
0.1659000 |
37.0 |
70.0 |
30 |
207.25 |
13.33 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
112309331 |
rs85276 |
T |
C |
. |
PASS |
0.4274000 |
0.0965000 |
0.0030000 |
0.1252000 |
0.0716000 |
0.1659000 |
36.45 |
70.0 |
48 |
729.99 |
9.09 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
112321032 |
rs640029 |
T |
A |
. |
PASS |
0.3865000 |
0.1340000 |
0.0367000 |
0.1958000 |
0.1299000 |
0.1927000 |
36.49 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
112991698 |
rs2256883 |
T |
C |
. |
PASS |
0.3238000 |
0.5692000 |
0.4464000 |
0.6600000 |
0.7096000 |
0.5254000 |
36.56 |
70.0 |
104 |
1000.00 |
7.26 |
51.92 |
0 |
51.92 |
0/1 |
| chr1 |
112991862 |
rs3818729 |
G |
T |
. |
PASS |
0.0923000 |
0.3184000 |
0.5536000 |
0.2008000 |
0.2290000 |
0.2650000 |
37.0 |
70.0 |
21 |
234.33 |
15.48 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
112999227 |
rs1175641 |
G |
A |
. |
PASS |
0.9561000 |
0.9366000 |
1.0000000 |
0.8608000 |
0.9387000 |
0.9397000 |
35.58 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
113052155 |
rs3790605 |
C |
G |
. |
PASS |
0.0908000 |
0.3314000 |
0.3968000 |
0.3320000 |
0.2270000 |
0.2608000 |
36.2 |
70.0 |
30 |
487.63 |
6.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
113052186 |
rs3790606 |
G |
C |
. |
PASS |
0.0900000 |
0.3300000 |
0.3988000 |
0.3320000 |
0.2270000 |
0.2608000 |
37.0 |
70.0 |
15 |
252.40 |
1.67 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
113063125 |
rs910697 |
A |
G |
. |
PASS |
0.5371000 |
0.4438000 |
0.6151000 |
0.4612000 |
0.3262000 |
0.4834000 |
37.0 |
69.13 |
59 |
750.66 |
7.52 |
38.98 |
0 |
38.98 |
0/1 |
| chr1 |
113068577 |
rs35147679 |
C |
T |
. |
PASS |
0.0628000 |
0.2767000 |
0.4266000 |
0.2266000 |
0.2086000 |
0.2270000 |
37.0 |
70.0 |
16 |
211.76 |
51.79 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
113140583 |
rs12049572 |
T |
C |
. |
PASS |
0.0620000 |
0.2781000 |
0.4266000 |
0.2256000 |
0.2106000 |
0.2272000 |
37.0 |
69.17 |
53 |
810.49 |
11.79 |
45.28 |
0 |
45.28 |
0/1 |
| chr1 |
113196196 |
rs66520135 |
TA |
T |
. |
PASS |
0.0991000 |
0.1484000 |
0.2222000 |
0.1183000 |
0.1442000 |
0.1434000 |
35.0 |
70.0 |
22 |
730.03 |
2.02 |
81.82 |
0 |
100.00 |
0/1 |
| chr1 |
113196197 |
rs2932528 |
A |
T |
. |
PASS |
0.7625000 |
0.7291000 |
0.6756000 |
0.6332000 |
0.7536000 |
0.7127000 |
35.0 |
70.0 |
22 |
730.03 |
9.09 |
18.18 |
0 |
100.00 |
0/1 |
| chr1 |
113202417 |
rs2932536 |
G |
A |
. |
PASS |
0.5204000 |
0.5720000 |
0.3720000 |
0.5129000 |
0.6524000 |
0.5220000 |
37.0 |
70.0 |
42 |
425.89 |
14.29 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
113234179 |
rs3795819 |
C |
T |
. |
PASS |
0.1672000 |
0.2911000 |
0.5387000 |
0.2346000 |
0.2249000 |
0.2839000 |
37.0 |
70.0 |
10 |
104.51 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
113234456 |
rs2932532 |
G |
A |
. |
PASS |
0.5030000 |
0.5720000 |
0.3710000 |
0.5119000 |
0.6656000 |
0.5196000 |
36.0 |
70.0 |
33 |
357.43 |
28.79 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
113236534 |
rs1110042 |
A |
T |
. |
PASS |
0.1672000 |
0.2911000 |
0.5427000 |
0.2346000 |
0.2249000 |
0.2847000 |
35.8 |
70.0 |
20 |
308.88 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
113236681 |
rs3748656 |
C |
T |
. |
PASS |
0.1672000 |
0.2911000 |
0.5427000 |
0.2346000 |
0.2249000 |
0.2847000 |
36.74 |
70.0 |
91 |
1000.00 |
7.34 |
51.65 |
0 |
51.65 |
0/1 |
| chr1 |
113237171 |
rs883593 |
A |
G |
. |
PASS |
0.1672000 |
0.2911000 |
0.5427000 |
0.2346000 |
0.2249000 |
0.2847000 |
37.0 |
69.6 |
89 |
1000.00 |
10.11 |
56.18 |
0 |
56.18 |
0/1 |
| chr1 |
113239382 |
rs17030651 |
G |
A |
. |
PASS |
0.0787000 |
0.2810000 |
0.4425000 |
0.2346000 |
0.1984000 |
0.2346000 |
36.52 |
70.0 |
76 |
1000.00 |
1.26 |
65.79 |
0 |
65.79 |
0/1 |
| chr1 |
113239478 |
rs2999158 |
T |
C |
. |
PASS |
0.8767000 |
0.8458000 |
0.8442000 |
0.6660000 |
0.7883000 |
0.8063000 |
36.73 |
70.0 |
83 |
1000.00 |
1.48 |
53.01 |
0 |
53.01 |
0/1 |
| chr1 |
113240790 |
rs12133583 |
G |
T |
. |
PASS |
0.1679000 |
0.2911000 |
0.5417000 |
0.2346000 |
0.2249000 |
0.2847000 |
34.82 |
70.0 |
26 |
320.58 |
1.40 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
113241052 |
rs2306940 |
T |
C |
. |
PASS |
0.1762000 |
0.2911000 |
0.5417000 |
0.2346000 |
0.2260000 |
0.2871000 |
36.05 |
70.0 |
83 |
1000.00 |
11.54 |
45.78 |
0 |
45.78 |
0/1 |
| chr1 |
113242488 |
rs3013431 |
C |
T |
. |
PASS |
0.5053000 |
0.6196000 |
0.3690000 |
0.5984000 |
0.6759000 |
0.5457000 |
36.14 |
70.0 |
28 |
456.03 |
21.43 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
113242978 |
rs72701120 |
G |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.37 |
70.0 |
104 |
1000.00 |
1.08 |
54.81 |
0 |
54.81 |
0/1 |
| chr1 |
113243048 |
rs6679 |
C |
T |
. |
PASS |
0.1702000 |
0.2911000 |
0.5407000 |
0.2346000 |
0.2188000 |
0.2839000 |
37.0 |
70.0 |
69 |
1000.00 |
13.38 |
49.28 |
0 |
49.28 |
0/1 |
| chr1 |
113244356 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
26 |
56.35 |
23.08 |
15.38 |
0 |
15.38 |
0/1 |
| chr1 |
113246229 |
rs937053 |
T |
A |
. |
PASS |
0.4349000 |
0.4193000 |
0.3026000 |
0.5457000 |
0.6636000 |
0.4730000 |
37.0 |
70.0 |
32 |
451.84 |
0.00 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
113246506 |
rs2306937 |
C |
T |
. |
PASS |
0.0628000 |
0.2781000 |
0.4425000 |
0.2346000 |
0.1922000 |
0.2288000 |
35.5 |
70.0 |
13 |
250.55 |
19.23 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
113249085 |
rs370899656 |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
62.67 |
15 |
276.74 |
13.33 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
113252851 |
rs138165734 |
CTTG |
C |
. |
PASS |
0.0030000 |
0.0115000 |
0.0000000 |
0.0209000 |
0.0041000 |
0.0073882 |
35.91 |
70.0 |
64 |
1000.00 |
5.35 |
70.31 |
0 |
70.31 |
0/1 |
| chr1 |
113255212 |
rs12137976 |
G |
T |
. |
PASS |
0.5045000 |
0.4337000 |
0.6230000 |
0.3986000 |
0.2178000 |
0.4413000 |
37.0 |
70.0 |
13 |
300.19 |
25.64 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
113255389 |
rs10857971 |
C |
T |
. |
PASS |
0.8835000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9679000 |
36.12 |
70.0 |
137 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
113255686 |
rs147819439,rs36095892 |
T |
TTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.36 |
70.0 |
11 |
282.76 |
8.08 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
113290922 |
rs11102529 |
C |
G |
. |
PASS |
0.5832000 |
0.9625000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.8846000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
113460676 |
. |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.68 |
70.0 |
32 |
630.27 |
13.82 |
59.38 |
1 |
59.38 |
0/1 |
| chr1 |
113460676 |
. |
CAATAAATA |
CAATA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
32 |
318.13 |
37.50 |
25.00 |
1 |
59.38 |
0/1 |
| chr1 |
113460676 |
rs199817200 |
CAATAAATA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
32 |
318.13 |
3.41 |
34.38 |
1 |
59.38 |
0/1 |
| chr1 |
113460677 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.68 |
70.0 |
32 |
630.27 |
13.82 |
59.38 |
1 |
59.38 |
0/1 |
| chr1 |
113460678 |
. |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.68 |
70.0 |
32 |
630.27 |
13.82 |
59.38 |
1 |
59.38 |
0/1 |
| chr1 |
113460679 |
. |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.68 |
70.0 |
31 |
633.28 |
10.19 |
61.29 |
1 |
61.29 |
0/1 |
| chr1 |
113616382 |
rs56062000 |
G |
GA |
. |
PASS |
0.1165000 |
0.5432000 |
0.3095000 |
0.6014000 |
0.5225000 |
0.3912000 |
37.0 |
70.0 |
10 |
366.64 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
113636924 |
rs1216802 |
T |
C |
. |
PASS |
0.5045000 |
0.9524000 |
0.9514000 |
0.9891000 |
0.9836000 |
0.8474000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
113657092 |
rs1216793 |
A |
C |
. |
PASS |
0.7027000 |
0.9669000 |
0.9504000 |
0.9891000 |
0.9847000 |
0.9018000 |
36.74 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
113658887 |
rs1216791 |
G |
A |
. |
PASS |
0.5408000 |
0.7939000 |
0.9266000 |
0.8539000 |
0.9172000 |
0.7899000 |
36.52 |
70.0 |
46 |
861.33 |
6.26 |
54.35 |
0 |
54.35 |
0/1 |
| chr1 |
113659065 |
rs10541977 |
ACT |
A |
. |
PASS |
0.5408000 |
0.7939000 |
0.9266000 |
0.8539000 |
0.9172000 |
0.7899000 |
36.83 |
70.0 |
67 |
1000.00 |
0.60 |
52.24 |
0 |
52.24 |
0/1 |
| chr1 |
113711956 |
rs17031158 |
A |
G |
. |
PASS |
0.0983000 |
0.1671000 |
0.0238000 |
0.1322000 |
0.0675000 |
0.0937000 |
37.0 |
70.0 |
17 |
250.53 |
5.88 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
113711973 |
rs17031160 |
G |
C |
. |
PASS |
0.0983000 |
0.1671000 |
0.0238000 |
0.1322000 |
0.0675000 |
0.0937000 |
37.0 |
70.0 |
11 |
139.12 |
10.91 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
113933570 |
rs12568854 |
G |
A |
. |
PASS |
0.0151000 |
0.3026000 |
0.5972000 |
0.1779000 |
0.1319000 |
0.2260000 |
35.0 |
70.0 |
17 |
154.97 |
35.29 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
113992475 |
rs12025806 |
C |
T |
. |
PASS |
0.0182000 |
0.2983000 |
0.6022000 |
0.1750000 |
0.1309000 |
0.2280000 |
37.0 |
62.84 |
101 |
1000.00 |
3.69 |
36.63 |
0 |
36.63 |
0/1 |
| chr1 |
113993175 |
rs7518586 |
C |
T |
. |
PASS |
0.9796000 |
0.9424000 |
0.9881000 |
0.9364000 |
0.9479000 |
0.9613000 |
36.43 |
68.08 |
106 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
114196495 |
rs2359173 |
A |
G |
. |
PASS |
0.0098000 |
0.2032000 |
0.0933000 |
0.3270000 |
0.4049000 |
0.1943000 |
36.14 |
70.0 |
101 |
1000.00 |
0.57 |
55.45 |
0 |
55.45 |
0/1 |
| chr1 |
114240319 |
rs3835263 |
T |
TA |
. |
PASS |
0.8540000 |
0.5778000 |
0.3631000 |
0.7406000 |
0.7720000 |
0.6781000 |
36.66 |
70.0 |
52 |
1000.00 |
6.95 |
59.62 |
0 |
59.62 |
0/1 |
| chr1 |
114242250 |
rs3752953 |
C |
T |
. |
PASS |
0.1067000 |
0.1830000 |
0.0794000 |
0.3002000 |
0.3650000 |
0.2011000 |
37.0 |
70.0 |
16 |
169.99 |
8.33 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
114249382 |
rs6698586 |
C |
T |
. |
PASS |
0.8351000 |
0.5735000 |
0.3958000 |
0.7406000 |
0.7730000 |
0.6793000 |
37.0 |
70.0 |
20 |
325.04 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
114267347 |
rs1230640 |
C |
T |
. |
PASS |
0.9244000 |
0.5778000 |
0.3958000 |
0.7406000 |
0.7730000 |
0.7035000 |
37.0 |
68.1 |
39 |
727.32 |
5.13 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
114280717 |
rs2273758 |
A |
C |
. |
PASS |
0.7708000 |
0.4755000 |
0.1667000 |
0.6014000 |
0.6830000 |
0.5571000 |
35.86 |
70.0 |
40 |
696.14 |
1.19 |
52.50 |
0 |
52.50 |
0/1 |
| chr1 |
114339956 |
rs34169583,rs3838298 |
C |
CTAAA |
. |
PASS |
0.9160000 |
0.5749000 |
0.3968000 |
0.7406000 |
0.7751000 |
0.7015000 |
36.18 |
70.0 |
29 |
349.90 |
21.26 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
114377093 |
rs1599971 |
A |
G |
. |
PASS |
0.9168000 |
0.5735000 |
0.3948000 |
0.7406000 |
0.7761000 |
0.7013000 |
37.0 |
70.0 |
22 |
277.24 |
25.25 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
114377568 |
rs2476601 |
A |
G |
. |
PASS |
0.9970000 |
0.9640000 |
1.0000000 |
0.9056000 |
0.9867000 |
0.9726000 |
35.91 |
70.0 |
67 |
1000.00 |
1.40 |
98.51 |
0 |
98.51 |
1/1 |
| chr1 |
114401231 |
rs1217418 |
A |
G |
. |
PASS |
0.6800000 |
0.4179000 |
0.1706000 |
0.5527000 |
0.6789000 |
0.5154000 |
34.33 |
70.0 |
18 |
265.26 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
114401904 |
rs1217419 |
T |
G |
. |
PASS |
0.6672000 |
0.4179000 |
0.1706000 |
0.5527000 |
0.6789000 |
0.5120000 |
36.29 |
70.0 |
29 |
574.18 |
17.04 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
114424601 |
rs1217381 |
C |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9994000 |
36.85 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
114515717 |
rs2358996 |
G |
A |
. |
PASS |
0.5469000 |
0.4366000 |
0.5238000 |
0.4314000 |
0.4571000 |
0.4862000 |
36.12 |
70.0 |
91 |
1000.00 |
3.54 |
45.05 |
0 |
45.05 |
0/1 |
| chr1 |
114522285 |
rs12728679 |
A |
G |
. |
PASS |
0.0030000 |
0.0331000 |
0.0000000 |
0.0765000 |
0.0102000 |
0.0228000 |
37.0 |
70.0 |
32 |
372.47 |
8.33 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
114596480 |
rs11102724 |
C |
T |
. |
PASS |
0.3835000 |
0.6585000 |
0.5476000 |
0.6958000 |
0.5481000 |
0.5495000 |
36.61 |
70.0 |
118 |
1000.00 |
8.20 |
51.69 |
0 |
51.69 |
0/1 |
| chr1 |
114641685 |
rs2774285 |
A |
G |
. |
PASS |
0.9652000 |
0.7392000 |
0.9325000 |
0.7396000 |
0.8415000 |
0.8578000 |
36.14 |
70.0 |
33 |
440.99 |
13.42 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
114680540 |
rs17032441 |
C |
T |
. |
PASS |
0.2247000 |
0.1628000 |
0.2579000 |
0.2078000 |
0.1646000 |
0.2077000 |
36.38 |
70.0 |
79 |
1000.00 |
6.36 |
49.37 |
0 |
49.37 |
0/1 |
| chr1 |
114680745 |
rs11102739 |
C |
A |
. |
PASS |
0.0635000 |
0.0965000 |
0.0000000 |
0.1342000 |
0.0808000 |
0.0729000 |
37.0 |
70.0 |
11 |
180.89 |
15.15 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
114940632 |
rs5777192 |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
70.0 |
22 |
784.39 |
3.46 |
95.45 |
0 |
95.45 |
1/1 |
| chr1 |
114948281 |
rs6537825 |
A |
G |
. |
PASS |
0.9803000 |
0.8012000 |
0.5823000 |
0.9364000 |
0.9284000 |
0.8564000 |
36.8 |
69.67 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
114976224 |
rs12132214 |
A |
C |
. |
PASS |
0.0061000 |
0.0836000 |
0.0010000 |
0.1491000 |
0.0317000 |
0.0495000 |
36.14 |
70.0 |
33 |
436.83 |
6.93 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
115078547 |
rs2878745 |
T |
C |
. |
PASS |
0.4592000 |
0.5447000 |
0.5139000 |
0.6103000 |
0.4468000 |
0.5100000 |
37.0 |
69.88 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115078549 |
rs12034144 |
G |
A |
. |
PASS |
0.0862000 |
0.2248000 |
0.4772000 |
0.1481000 |
0.1074000 |
0.2007000 |
37.0 |
70.0 |
16 |
128.23 |
17.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
115078685 |
rs2137365 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
43 |
532.04 |
17.51 |
39.53 |
0 |
39.53 |
0/1 |
| chr1 |
115080517 |
rs6674801 |
G |
A |
. |
PASS |
0.4569000 |
0.4914000 |
0.1825000 |
0.5606000 |
0.3528000 |
0.4069000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115110683 |
rs8128 |
A |
C |
. |
PASS |
0.4788000 |
0.4813000 |
0.4990000 |
0.5229000 |
0.3661000 |
0.4700000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115119392 |
rs41274118 |
T |
C |
. |
PASS |
0.0129000 |
0.2176000 |
0.4831000 |
0.1332000 |
0.0716000 |
0.1715000 |
36.25 |
70.0 |
31 |
530.54 |
14.92 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
115144304 |
rs12730318 |
C |
T |
. |
PASS |
0.0182000 |
0.1441000 |
0.0020000 |
0.2873000 |
0.1616000 |
0.1144000 |
37.0 |
70.0 |
11 |
310.35 |
10.10 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
115144703 |
rs28398 |
A |
G |
. |
PASS |
0.9992000 |
0.9971000 |
1.0000000 |
0.9970000 |
0.9980000 |
0.9984000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115161140 |
rs12145066 |
C |
T |
. |
PASS |
0.0182000 |
0.1455000 |
0.0020000 |
0.2883000 |
0.1616000 |
0.1148000 |
35.5 |
70.0 |
15 |
244.53 |
8.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
115168600 |
rs7541738 |
A |
T |
. |
PASS |
0.0182000 |
0.1441000 |
0.0020000 |
0.2863000 |
0.1616000 |
0.1142000 |
35.36 |
70.0 |
46 |
707.84 |
9.88 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
115236057 |
rs17602729 |
G |
A |
. |
PASS |
0.0045000 |
0.0576000 |
0.0010000 |
0.1233000 |
0.0204000 |
0.0381000 |
37.0 |
70.0 |
43 |
339.35 |
2.33 |
27.91 |
0 |
27.91 |
0/1 |
| chr1 |
115262124 |
rs72687876 |
G |
A |
. |
PASS |
0.1172000 |
0.1484000 |
0.0248000 |
0.2485000 |
0.2280000 |
0.1510000 |
37.0 |
70.0 |
11 |
101.50 |
31.82 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
115284056 |
rs7537232 |
G |
T |
. |
PASS |
0.4395000 |
0.1931000 |
0.0238000 |
0.2594000 |
0.2301000 |
0.2446000 |
37.0 |
70.0 |
12 |
136.12 |
16.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
115398044 |
rs60659641 |
GC |
G |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
35.88 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115399884 |
rs17544210 |
C |
G |
. |
PASS |
0.0749000 |
0.0519000 |
0.0159000 |
0.0686000 |
0.0562000 |
0.0383000 |
37.0 |
68.95 |
40 |
636.62 |
10.79 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
115399940 |
rs360614 |
T |
G |
. |
PASS |
0.1611000 |
0.3516000 |
0.5258000 |
0.4076000 |
0.2658000 |
0.3309000 |
37.0 |
68.89 |
33 |
615.92 |
3.03 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
115417093 |
rs7518392 |
A |
C |
. |
PASS |
0.0333000 |
0.0749000 |
0.0159000 |
0.0795000 |
0.0573000 |
0.0495000 |
35.5 |
70.0 |
21 |
222.32 |
16.67 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
115420905 |
rs360636 |
T |
C |
. |
PASS |
0.1823000 |
0.3516000 |
0.5129000 |
0.4066000 |
0.2638000 |
0.3333000 |
37.0 |
70.0 |
16 |
170.00 |
0.00 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
115576023 |
rs10776792 |
A |
G |
. |
PASS |
1.0000000 |
0.9942000 |
1.0000000 |
0.9622000 |
0.9591000 |
0.9836000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115600081 |
rs3820630 |
G |
C |
. |
PASS |
0.1974000 |
0.0821000 |
0.0149000 |
0.0755000 |
0.0542000 |
0.0923000 |
36.25 |
70.0 |
23 |
550.47 |
7.07 |
69.57 |
0 |
69.57 |
0/1 |
| chr1 |
115600137 |
rs3738704 |
A |
G |
. |
PASS |
0.2057000 |
0.0865000 |
0.0169000 |
0.0755000 |
0.0634000 |
0.0972000 |
36.65 |
70.0 |
53 |
1000.00 |
6.10 |
64.15 |
0 |
64.15 |
0/1 |
| chr1 |
115601528 |
rs3738702 |
C |
G |
. |
PASS |
0.1974000 |
0.0865000 |
0.0169000 |
0.0746000 |
0.0624000 |
0.0946000 |
36.57 |
70.0 |
71 |
907.23 |
4.23 |
39.44 |
0 |
39.44 |
0/1 |
| chr1 |
115601615 |
rs7523818 |
A |
G |
. |
PASS |
0.9985000 |
0.9640000 |
1.0000000 |
0.8986000 |
0.9560000 |
0.9657000 |
35.71 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115602498 |
rs6537852 |
C |
G |
. |
PASS |
0.9395000 |
0.9553000 |
1.0000000 |
0.9006000 |
0.9571000 |
0.9495000 |
36.65 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115602606 |
rs12082966 |
C |
G |
. |
PASS |
0.0658000 |
0.0764000 |
0.0169000 |
0.0746000 |
0.0624000 |
0.0585000 |
35.24 |
70.0 |
76 |
1000.00 |
7.70 |
53.95 |
0 |
53.95 |
0/1 |
| chr1 |
115604681 |
rs11102881 |
A |
G |
. |
PASS |
0.3018000 |
0.3343000 |
0.4921000 |
0.3012000 |
0.1769000 |
0.3201000 |
37.0 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115604798 |
rs10776795 |
C |
T |
. |
PASS |
0.3018000 |
0.3343000 |
0.4921000 |
0.3012000 |
0.1769000 |
0.3201000 |
36.52 |
69.52 |
125 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115615358 |
rs753189 |
T |
C |
. |
PASS |
0.4387000 |
0.2608000 |
0.0784000 |
0.3032000 |
0.2157000 |
0.2708000 |
37.0 |
70.0 |
10 |
104.51 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
115631924 |
rs4240540 |
C |
T |
. |
PASS |
0.9622000 |
0.9928000 |
1.0000000 |
0.9622000 |
0.9571000 |
0.9730000 |
36.48 |
69.13 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
115829313 |
rs6330 |
G |
A |
. |
PASS |
0.1551000 |
0.3228000 |
0.1637000 |
0.4563000 |
0.1902000 |
0.2474000 |
36.1 |
70.0 |
79 |
1000.00 |
3.80 |
50.63 |
0 |
50.63 |
0/1 |
| chr1 |
115941974 |
rs990267 |
T |
C |
. |
PASS |
0.5250000 |
0.5850000 |
0.6905000 |
0.6044000 |
0.5746000 |
0.5923000 |
35.83 |
70.0 |
80 |
1000.00 |
10.06 |
51.25 |
0 |
51.25 |
0/1 |
| chr1 |
116108044 |
rs2000710 |
T |
G |
. |
PASS |
0.5295000 |
0.9150000 |
0.9812000 |
0.9523000 |
0.9417000 |
0.8393000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116206423 |
rs4839469 |
G |
A |
. |
PASS |
0.0416000 |
0.2176000 |
0.1220000 |
0.1620000 |
0.0859000 |
0.1150000 |
36.69 |
70.0 |
62 |
1000.00 |
5.79 |
62.90 |
0 |
62.90 |
0/1 |
| chr1 |
116224925 |
rs10923176 |
G |
A |
. |
PASS |
0.5325000 |
0.7507000 |
0.7202000 |
0.6740000 |
0.7832000 |
0.6779000 |
35.91 |
68.18 |
28 |
330.72 |
20.78 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
116224940 |
rs10754330 |
C |
A |
. |
PASS |
0.5325000 |
0.7507000 |
0.7202000 |
0.6759000 |
0.7832000 |
0.6783000 |
37.0 |
68.46 |
34 |
404.05 |
24.43 |
38.24 |
0 |
38.24 |
0/1 |
| chr1 |
116225180 |
rs10923177 |
A |
C |
. |
PASS |
0.5393000 |
0.7522000 |
0.7202000 |
0.6750000 |
0.7853000 |
0.6805000 |
35.67 |
70.0 |
29 |
240.01 |
13.03 |
31.03 |
0 |
31.03 |
0/1 |
| chr1 |
116226459 |
rs12144356 |
C |
T |
. |
PASS |
0.5976000 |
0.7594000 |
0.7202000 |
0.6740000 |
0.7832000 |
0.6963000 |
37.0 |
70.0 |
13 |
387.87 |
5.59 |
84.62 |
0 |
84.62 |
0/1 |
| chr1 |
116226749 |
rs5777243,rs200875190,rs34363411 |
T |
TTTTA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
70.0 |
24 |
130.33 |
50.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
116243877 |
rs7413162 |
G |
A |
. |
PASS |
0.4599000 |
0.4640000 |
0.3224000 |
0.4135000 |
0.4714000 |
0.4257000 |
37.0 |
70.0 |
59 |
1000.00 |
4.55 |
59.32 |
0 |
61.02 |
0/1 |
| chr1 |
116247790 |
rs3811003 |
G |
A |
. |
PASS |
0.6142000 |
0.3487000 |
0.5198000 |
0.3022000 |
0.2710000 |
0.4287000 |
37.0 |
69.67 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116247826 |
rs72703607 |
T |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
74 |
956.13 |
2.24 |
39.19 |
0 |
39.19 |
0/1 |
| chr1 |
116260532 |
rs2997741 |
A |
T |
. |
PASS |
0.7057000 |
0.6383000 |
0.6706000 |
0.5656000 |
0.6115000 |
0.6428000 |
35.8 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116260544 |
rs3811001 |
C |
T |
. |
PASS |
0.2375000 |
0.2824000 |
0.1825000 |
0.2555000 |
0.3119000 |
0.2508000 |
35.29 |
70.0 |
21 |
184.70 |
9.52 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
116260604 |
rs2997742 |
G |
A |
. |
PASS |
0.6626000 |
0.6326000 |
0.6706000 |
0.5656000 |
0.6115000 |
0.6306000 |
34.82 |
70.0 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116268178 |
rs35967913 |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.29 |
70.0 |
41 |
1000.00 |
0.13 |
92.68 |
0 |
92.68 |
0/1 |
| chr1 |
116268699 |
rs6665970 |
A |
G |
. |
PASS |
0.4402000 |
0.6225000 |
0.6706000 |
0.5646000 |
0.6207000 |
0.5721000 |
36.73 |
69.77 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116283343 |
rs9428083 |
A |
G |
. |
PASS |
0.2814000 |
0.7608000 |
0.7431000 |
0.8738000 |
0.7106000 |
0.6436000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116283526 |
rs7538337 |
G |
A |
. |
PASS |
0.2814000 |
0.7608000 |
0.7421000 |
0.8738000 |
0.7117000 |
0.6436000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116287634 |
rs10801969 |
A |
G |
. |
PASS |
0.1657000 |
0.3473000 |
0.4296000 |
0.3052000 |
0.3067000 |
0.2995000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116310967 |
rs4074536 |
T |
C |
. |
PASS |
0.4856000 |
0.3674000 |
0.5159000 |
0.2922000 |
0.3047000 |
0.4012000 |
37.0 |
70.0 |
72 |
1000.00 |
0.21 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
116311198 |
rs4074537 |
T |
C |
. |
PASS |
0.8631000 |
0.9914000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9625000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116399835 |
rs2811577 |
C |
T |
. |
PASS |
0.1914000 |
0.3660000 |
0.4524000 |
0.1441000 |
0.3538000 |
0.2903000 |
36.29 |
69.88 |
41 |
542.22 |
19.23 |
41.46 |
0 |
41.46 |
0/1 |
| chr1 |
116400329 |
rs2811578 |
C |
G |
. |
PASS |
0.1853000 |
0.4107000 |
0.5079000 |
0.2018000 |
0.4039000 |
0.3275000 |
37.0 |
70.0 |
35 |
693.44 |
17.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
116400426 |
rs7512945 |
T |
C |
. |
PASS |
0.3986000 |
0.1196000 |
0.1984000 |
0.1899000 |
0.1196000 |
0.2232000 |
37.0 |
69.92 |
17 |
417.61 |
12.75 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
116534852 |
rs4046190 |
C |
T |
. |
PASS |
0.1362000 |
0.4827000 |
0.4196000 |
0.6441000 |
0.6074000 |
0.4353000 |
36.54 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116569530 |
rs2488429 |
G |
C |
. |
PASS |
0.8495000 |
0.8674000 |
0.8740000 |
0.9543000 |
0.9796000 |
0.9034000 |
36.1 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116577981 |
rs1935828 |
G |
A |
. |
PASS |
0.8585000 |
0.9856000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9603000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
116609126 |
rs3833541 |
TC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117122285 |
. |
G |
GTCC |
. |
PASS |
0.1528000 |
0.3069000 |
0.1022000 |
0.4284000 |
0.2873000 |
0.2456000 |
36.58 |
70.0 |
139 |
878.01 |
8.15 |
23.74 |
0 |
23.74 |
0/1 |
| chr1 |
117122288 |
rs647711 |
G |
C |
. |
PASS |
0.1732000 |
0.3141000 |
0.1101000 |
0.4324000 |
0.3241000 |
0.2616000 |
36.78 |
70.0 |
136 |
1000.00 |
4.63 |
39.71 |
0 |
39.71 |
0/1 |
| chr1 |
117142613 |
rs76151115 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.11 |
64.52 |
146 |
631.86 |
18.52 |
18.49 |
0 |
18.49 |
0/1 |
| chr1 |
117142641 |
rs76417519 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
63.06 |
135 |
289.06 |
16.30 |
13.33 |
0 |
13.33 |
0/1 |
| chr1 |
117142707 |
rs201515387 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.72 |
150 |
267.90 |
0.89 |
12.00 |
0 |
12.00 |
0/1 |
| chr1 |
117142844 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.15 |
158 |
327.37 |
13.67 |
12.66 |
0 |
12.66 |
0/1 |
| chr1 |
117142855 |
rs61786568 |
C |
T |
. |
PASS |
0.0030000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0007987 |
37.0 |
63.15 |
159 |
324.36 |
8.05 |
12.58 |
0 |
12.58 |
0/1 |
| chr1 |
117142867 |
. |
CCA |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.14 |
156 |
410.93 |
1.17 |
14.10 |
0 |
14.10 |
0/1 |
| chr1 |
117146504 |
rs61786577 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
60.26 |
139 |
318.77 |
20.83 |
13.67 |
0 |
13.67 |
0/1 |
| chr1 |
117146563 |
rs61786578 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
53.39 |
126 |
328.15 |
6.35 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
117146571 |
rs61786579 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.44 |
117 |
283.72 |
8.87 |
13.68 |
0 |
13.68 |
0/1 |
| chr1 |
117146585 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.44 |
108 |
310.80 |
11.57 |
14.81 |
0 |
14.81 |
0/1 |
| chr1 |
117146592 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.67 |
91 |
316.03 |
23.00 |
16.48 |
0 |
16.48 |
0/1 |
| chr1 |
117146629 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.88 |
50 |
151.20 |
10.00 |
16.00 |
0 |
16.00 |
0/1 |
| chr1 |
117150488 |
rs111304243 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.0 |
20 |
74.41 |
10.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
117150617 |
rs61786588 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
57.43 |
115 |
766.96 |
2.80 |
24.35 |
0 |
24.35 |
0/1 |
| chr1 |
117150628 |
rs79475403 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
58.79 |
114 |
765.79 |
3.76 |
24.56 |
0 |
24.56 |
0/1 |
| chr1 |
117150736 |
rs140699309 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.15 |
53.69 |
94 |
160.68 |
70.57 |
12.77 |
0 |
13.83 |
0/1 |
| chr1 |
117150928 |
rs150982249 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.68 |
81 |
767.99 |
5.14 |
30.86 |
0 |
30.86 |
0/1 |
| chr1 |
117150933 |
rs115837117 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.05 |
64 |
568.53 |
8.06 |
29.69 |
0 |
29.69 |
0/1 |
| chr1 |
117150966 |
rs79107296 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
62.6 |
39 |
460.54 |
0.00 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
117156340 |
rs200526371 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
64.25 |
17 |
71.43 |
47.06 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
117156459 |
rs61786651 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
62.53 |
96 |
460.20 |
13.49 |
19.79 |
0 |
19.79 |
0/1 |
| chr1 |
117156490 |
rs61786652 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.09 |
91 |
153.10 |
23.38 |
12.09 |
0 |
12.09 |
0/1 |
| chr1 |
117156583 |
. |
CTG |
CCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.5 |
130 |
83.51 |
9.23 |
9.23 |
0 |
9.23 |
0/1 |
| chr1 |
117158934 |
rs200177381 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
49.29 |
129 |
152.02 |
30.90 |
10.85 |
0 |
10.85 |
0/1 |
| chr1 |
117158972 |
rs3965246 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
50.92 |
114 |
602.89 |
3.95 |
21.05 |
0 |
21.05 |
0/1 |
| chr1 |
117159024 |
rs201692914 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.35 |
100 |
376.63 |
3.65 |
17.00 |
0 |
17.00 |
0/1 |
| chr1 |
117236970 |
rs614477 |
G |
C |
. |
PASS |
0.2965000 |
0.5346000 |
0.1726000 |
0.6600000 |
0.3579000 |
0.3896000 |
36.25 |
70.0 |
16 |
616.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117256697 |
rs9887785 |
A |
C |
. |
PASS |
0.4675000 |
0.5793000 |
0.5813000 |
0.6541000 |
0.6472000 |
0.5785000 |
36.92 |
69.96 |
152 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117311147 |
rs699738 |
C |
A |
. |
PASS |
0.6293000 |
0.2450000 |
0.2877000 |
0.1004000 |
0.0838000 |
0.2945000 |
36.17 |
70.0 |
62 |
964.09 |
24.14 |
46.77 |
0 |
46.77 |
0/1 |
| chr1 |
117487270 |
rs56209138 |
G |
A |
. |
PASS |
0.2292000 |
0.1816000 |
0.5149000 |
0.2197000 |
0.2802000 |
0.2881000 |
36.31 |
70.0 |
59 |
1000.00 |
3.49 |
59.32 |
0 |
59.32 |
0/1 |
| chr1 |
117487709 |
rs71483896 |
CAT |
CGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.42 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117509981 |
rs12410651 |
G |
A |
. |
PASS |
0.1339000 |
0.1556000 |
0.0466000 |
0.1819000 |
0.1493000 |
0.1320000 |
37.0 |
70.0 |
21 |
447.34 |
5.13 |
61.90 |
0 |
61.90 |
0/1 |
| chr1 |
117509987 |
rs12403233 |
C |
T |
. |
PASS |
0.1339000 |
0.1556000 |
0.0466000 |
0.1819000 |
0.1616000 |
0.1344000 |
35.0 |
70.0 |
20 |
384.56 |
10.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
117527645 |
rs3841438,rs36119404 |
GTCT |
G |
. |
PASS |
0.5159000 |
0.2637000 |
0.4514000 |
0.2763000 |
0.3149000 |
0.3806000 |
36.67 |
70.0 |
49 |
559.35 |
13.83 |
36.73 |
1 |
36.73 |
0/1 |
| chr1 |
117527647 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
70.0 |
43 |
574.42 |
9.56 |
41.86 |
1 |
41.86 |
0/1 |
| chr1 |
117529458 |
rs10801922 |
G |
A |
. |
PASS |
0.3018000 |
0.5951000 |
0.6597000 |
0.4364000 |
0.5910000 |
0.4980000 |
36.22 |
70.0 |
91 |
1000.00 |
7.55 |
50.55 |
0 |
50.55 |
0/1 |
| chr1 |
117554421 |
rs3754112 |
A |
G |
. |
PASS |
0.0348000 |
0.2017000 |
0.0635000 |
0.3370000 |
0.1677000 |
0.1504000 |
36.73 |
70.0 |
90 |
1000.00 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
117559726 |
rs2249265 |
A |
G |
. |
PASS |
0.9690000 |
0.9625000 |
0.8462000 |
0.9602000 |
0.9366000 |
0.9353000 |
36.1 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117569390 |
rs2764878 |
C |
T |
. |
PASS |
0.5272000 |
0.5908000 |
0.6835000 |
0.4841000 |
0.5276000 |
0.5589000 |
37.0 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117602960 |
rs2244501 |
C |
A |
. |
PASS |
0.3835000 |
0.8631000 |
0.9018000 |
0.8757000 |
0.7904000 |
0.7326000 |
35.23 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117603188 |
rs2244406 |
G |
T |
. |
PASS |
0.5061000 |
0.7723000 |
0.9415000 |
0.6938000 |
0.7515000 |
0.7163000 |
36.67 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117617705 |
rs998532 |
A |
G |
. |
PASS |
0.1157000 |
0.6671000 |
0.7679000 |
0.5934000 |
0.6033000 |
0.5146000 |
35.76 |
69.31 |
60 |
962.24 |
0.11 |
48.33 |
0 |
48.33 |
0/1 |
| chr1 |
117618067 |
rs1289673 |
C |
T |
. |
PASS |
0.1120000 |
0.6686000 |
0.7679000 |
0.5934000 |
0.6033000 |
0.5138000 |
36.41 |
69.51 |
77 |
1000.00 |
6.34 |
53.25 |
0 |
53.25 |
0/1 |
| chr1 |
117618722 |
rs1289672 |
T |
C |
. |
PASS |
0.9735000 |
0.9957000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9922000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117622286 |
rs2801939 |
A |
G |
. |
PASS |
0.1286000 |
0.6945000 |
0.7688000 |
0.6600000 |
0.6247000 |
0.5395000 |
37.0 |
70.0 |
48 |
1000.00 |
6.18 |
60.42 |
0 |
60.42 |
0/1 |
| chr1 |
117631391 |
rs1555792 |
T |
C |
. |
PASS |
0.7496000 |
0.9481000 |
1.0000000 |
0.9294000 |
0.9796000 |
0.9085000 |
36.71 |
69.02 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117633366 |
rs2296447 |
T |
C |
. |
PASS |
0.0537000 |
0.1311000 |
0.0575000 |
0.2187000 |
0.1677000 |
0.1206000 |
35.0 |
70.0 |
20 |
145.95 |
3.33 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
117644058 |
rs41276572 |
A |
G |
. |
PASS |
0.0000000 |
0.0115000 |
0.0000000 |
0.0139000 |
0.0041000 |
0.0051917 |
35.24 |
70.0 |
64 |
1000.00 |
0.74 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
117655093 |
rs41301281 |
G |
A |
. |
PASS |
0.0015000 |
0.0360000 |
0.0000000 |
0.0567000 |
0.0020000 |
0.0171730 |
36.52 |
70.0 |
39 |
882.39 |
0.82 |
64.10 |
0 |
64.10 |
0/1 |
| chr1 |
117656088 |
rs1289658 |
A |
G |
. |
PASS |
0.6793000 |
0.4755000 |
0.1865000 |
0.4364000 |
0.3824000 |
0.4451000 |
37.0 |
70.0 |
82 |
764.97 |
8.20 |
30.49 |
0 |
30.49 |
0/1 |
| chr1 |
117660608 |
rs1289655 |
C |
T |
. |
PASS |
0.7973000 |
0.8804000 |
0.8671000 |
0.9056000 |
0.9172000 |
0.8680000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117660754 |
rs749902 |
C |
T |
. |
PASS |
0.2103000 |
0.3674000 |
0.0327000 |
0.3529000 |
0.2086000 |
0.2246000 |
37.0 |
70.0 |
85 |
1000.00 |
1.40 |
49.41 |
0 |
49.41 |
0/1 |
| chr1 |
117663913 |
rs3795655 |
C |
T |
. |
PASS |
0.7625000 |
0.6282000 |
0.9673000 |
0.6441000 |
0.7894000 |
0.7666000 |
37.0 |
70.0 |
16 |
169.99 |
16.67 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
117690272 |
rs10754339 |
G |
A |
. |
PASS |
0.2897000 |
0.8718000 |
0.9206000 |
0.9225000 |
0.8538000 |
0.7346000 |
36.41 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117696083 |
rs57126217 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
70.0 |
11 |
333.74 |
7.27 |
90.91 |
0 |
90.91 |
1/1 |
| chr1 |
117947897 |
rs3216042 |
CT |
C |
. |
PASS |
0.5961000 |
0.4294000 |
0.5526000 |
0.6332000 |
0.6462000 |
0.5815000 |
36.14 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
117957288 |
rs1289948 |
A |
G |
. |
PASS |
0.8888000 |
0.6744000 |
0.6240000 |
0.7555000 |
0.8160000 |
0.7648000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118165691 |
rs1630312 |
C |
T |
. |
PASS |
0.2617000 |
0.2810000 |
0.1220000 |
0.2873000 |
0.2035000 |
0.2071000 |
36.8 |
70.0 |
112 |
1000.00 |
11.31 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
118183659 |
rs1775826 |
A |
C |
. |
PASS |
0.3207000 |
0.6023000 |
0.4286000 |
0.6441000 |
0.5409000 |
0.4894000 |
34.0 |
70.0 |
16 |
70.29 |
12.50 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
118255058 |
rs2002747 |
A |
G |
. |
PASS |
0.4213000 |
0.6110000 |
0.6052000 |
0.5467000 |
0.5777000 |
0.5403000 |
36.0 |
70.0 |
64 |
1000.00 |
14.24 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
118320644 |
rs1780028 |
A |
G |
. |
PASS |
0.5189000 |
0.8775000 |
0.9147000 |
0.8877000 |
0.9274000 |
0.8021000 |
36.33 |
67.04 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118320859 |
rs1775749 |
T |
A |
. |
PASS |
0.9970000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9992000 |
37.0 |
57.19 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118321119 |
rs114485606 |
T |
C |
. |
PASS |
0.5204000 |
0.8775000 |
0.9147000 |
0.8877000 |
0.9264000 |
0.8023000 |
37.0 |
67.09 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118485989 |
rs72697552 |
T |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
12 |
303.19 |
16.67 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
118537142 |
rs72697565 |
T |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.54 |
70.0 |
69 |
833.88 |
10.93 |
37.68 |
0 |
37.68 |
0/1 |
| chr1 |
118537240 |
rs72697566 |
C |
G |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0040000 |
0.0000000 |
0.0009984 |
37.0 |
70.0 |
10 |
225.67 |
17.14 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
118565953 |
rs10923472 |
G |
A |
. |
PASS |
0.1551000 |
0.4107000 |
0.1567000 |
0.4314000 |
0.3650000 |
0.2873000 |
36.77 |
69.62 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118583408 |
rs10923477 |
G |
A |
. |
PASS |
0.1573000 |
0.4135000 |
0.1567000 |
0.4324000 |
0.3650000 |
0.2885000 |
37.0 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118617274 |
rs1935993 |
C |
T |
. |
PASS |
0.6006000 |
0.4625000 |
0.1696000 |
0.4881000 |
0.3763000 |
0.4283000 |
36.5 |
70.0 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118623681 |
rs56768861,rs5777332,rs34707033,rs66844004,rs72288918 |
TACACAC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118635715 |
rs55884631 |
A |
T |
. |
PASS |
0.0000000 |
0.0086000 |
0.0000000 |
0.0179000 |
0.0031000 |
0.0053914 |
37.0 |
70.0 |
12 |
94.34 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
118644430 |
rs10754367 |
A |
G |
. |
PASS |
0.6906000 |
0.5072000 |
0.4534000 |
0.5477000 |
0.5634000 |
0.5639000 |
36.36 |
70.0 |
168 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
118933899 |
rs10923561 |
T |
C |
. |
PASS |
0.4463000 |
0.5187000 |
0.5923000 |
0.6938000 |
0.6411000 |
0.5735000 |
37.0 |
70.0 |
17 |
208.76 |
13.45 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
119157211 |
rs1742854 |
G |
T |
. |
PASS |
0.3805000 |
0.3977000 |
0.2460000 |
0.5080000 |
0.4356000 |
0.3922000 |
36.2 |
70.0 |
15 |
574.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
119157490 |
rs1742856 |
A |
G |
. |
PASS |
0.8306000 |
0.6643000 |
0.4385000 |
0.6233000 |
0.5133000 |
0.6250000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
119466275 |
rs4659129 |
A |
G |
. |
PASS |
0.5696000 |
0.6196000 |
0.7817000 |
0.6839000 |
0.5665000 |
0.6416000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
119530133 |
rs961470 |
A |
G |
. |
PASS |
0.0968000 |
0.0519000 |
0.2232000 |
0.0577000 |
0.0521000 |
0.0994000 |
37.0 |
70.0 |
22 |
235.47 |
9.09 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
119575818 |
rs3790549 |
C |
G |
. |
PASS |
0.1127000 |
0.0331000 |
0.2143000 |
0.0437000 |
0.0542000 |
0.0968000 |
36.55 |
70.0 |
117 |
1000.00 |
7.87 |
45.30 |
0 |
45.30 |
0/1 |
| chr1 |
119577837 |
rs2247883 |
A |
T |
. |
PASS |
0.4652000 |
0.5994000 |
0.5595000 |
0.4533000 |
0.3671000 |
0.4812000 |
37.0 |
70.0 |
54 |
928.64 |
3.70 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
119627856 |
rs6658479 |
C |
T |
. |
PASS |
0.7148000 |
0.2608000 |
0.3889000 |
0.4006000 |
0.3354000 |
0.4491000 |
37.0 |
69.88 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
119627954 |
rs12738768 |
T |
C |
. |
PASS |
0.1271000 |
0.0173000 |
0.2103000 |
0.0278000 |
0.0532000 |
0.0942000 |
37.0 |
70.0 |
30 |
169.63 |
14.29 |
23.33 |
0 |
23.33 |
0/1 |
| chr1 |
119628096 |
rs113262693 |
C |
CT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
21 |
210.89 |
10.71 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
119669262 |
rs35404519 |
C |
A |
. |
PASS |
0.1551000 |
0.0187000 |
0.2262000 |
0.0278000 |
0.0532000 |
0.1050000 |
35.0 |
70.0 |
17 |
150.82 |
5.88 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
119669266 |
rs7556558 |
G |
C |
. |
PASS |
0.2965000 |
0.6744000 |
0.8244000 |
0.5199000 |
0.3916000 |
0.5186000 |
37.0 |
70.0 |
18 |
159.82 |
11.11 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
119669271 |
rs6428795 |
A |
G |
. |
PASS |
0.2965000 |
0.6744000 |
0.8234000 |
0.5199000 |
0.3916000 |
0.5184000 |
37.0 |
70.0 |
19 |
160.96 |
15.79 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
119762175 |
rs72691108 |
G |
A |
. |
PASS |
0.2110000 |
0.1196000 |
0.0506000 |
0.2455000 |
0.1953000 |
0.1699000 |
35.0 |
70.0 |
16 |
157.98 |
25.00 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
119923724 |
rs2275607 |
T |
C |
. |
PASS |
0.1558000 |
0.5216000 |
0.4504000 |
0.5298000 |
0.3446000 |
0.3582000 |
36.57 |
70.0 |
73 |
905.37 |
8.51 |
38.36 |
0 |
38.36 |
0/1 |
| chr1 |
119925403 |
rs1341007 |
C |
T |
. |
PASS |
0.0817000 |
0.5187000 |
0.4474000 |
0.5239000 |
0.3425000 |
0.3556000 |
37.0 |
70.0 |
10 |
188.05 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
119925464 |
rs2298027 |
G |
A |
. |
PASS |
0.0817000 |
0.5202000 |
0.4474000 |
0.5239000 |
0.3436000 |
0.3560000 |
37.0 |
70.0 |
29 |
465.02 |
8.87 |
48.28 |
0 |
48.28 |
0/1 |
| chr1 |
119927680 |
rs6667679 |
A |
G |
. |
PASS |
0.7042000 |
0.7291000 |
0.6726000 |
0.6203000 |
0.6176000 |
0.6675000 |
37.0 |
69.17 |
43 |
840.59 |
9.69 |
55.81 |
0 |
55.81 |
0/1 |
| chr1 |
119941153 |
rs5777391,rs61250067 |
A |
AT |
. |
PASS |
0.4690000 |
0.5778000 |
0.5694000 |
0.5268000 |
0.4489000 |
0.5120000 |
36.56 |
69.96 |
105 |
1000.00 |
4.35 |
46.67 |
0 |
48.57 |
0/1 |
| chr1 |
119964933 |
rs75429891 |
T |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0003994 |
36.69 |
69.59 |
83 |
1000.00 |
7.35 |
46.99 |
0 |
46.99 |
0/1 |
| chr1 |
119981612 |
rs10489812 |
C |
T |
. |
PASS |
0.3162000 |
0.1513000 |
0.0635000 |
0.0765000 |
0.1411000 |
0.1601000 |
35.8 |
70.0 |
25 |
297.98 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
119988404 |
rs10923823 |
C |
T |
. |
PASS |
0.1021000 |
0.5303000 |
0.4315000 |
0.5398000 |
0.3446000 |
0.3630000 |
37.0 |
70.0 |
31 |
626.08 |
15.41 |
58.06 |
0 |
58.06 |
0/1 |
| chr1 |
119988422 |
rs11805965 |
C |
T |
. |
PASS |
0.3169000 |
0.1513000 |
0.0635000 |
0.0765000 |
0.1411000 |
0.1603000 |
37.0 |
70.0 |
25 |
393.52 |
10.00 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
119988688 |
rs11802681 |
G |
A |
. |
PASS |
0.3162000 |
0.1513000 |
0.0625000 |
0.0765000 |
0.1411000 |
0.1599000 |
36.25 |
70.0 |
22 |
557.63 |
3.41 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
120057158 |
rs6203 |
C |
T |
. |
PASS |
0.0333000 |
0.4813000 |
0.6528000 |
0.4254000 |
0.3814000 |
0.3668000 |
36.75 |
69.56 |
94 |
1000.00 |
2.22 |
51.06 |
0 |
51.06 |
0/1 |
| chr1 |
120057246 |
rs1047303 |
C |
A |
. |
PASS |
0.9145000 |
0.7954000 |
0.9177000 |
0.6600000 |
0.8425000 |
0.8335000 |
35.99 |
67.28 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120071740 |
rs68156005 |
AT |
A |
. |
PASS |
0.4213000 |
0.7176000 |
0.8581000 |
0.6531000 |
0.7751000 |
0.6659000 |
36.37 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120088317 |
rs2885613 |
T |
C |
. |
PASS |
0.4486000 |
0.7176000 |
0.8423000 |
0.6541000 |
0.7751000 |
0.6701000 |
35.4 |
70.0 |
15 |
567.05 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120114293 |
rs373593839 |
AGC |
AAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.1 |
69.85 |
48 |
598.70 |
10.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
120144023 |
rs7519907 |
C |
T |
. |
PASS |
0.2648000 |
0.4352000 |
0.7302000 |
0.4145000 |
0.5736000 |
0.4724000 |
36.33 |
69.89 |
41 |
583.98 |
8.67 |
43.90 |
0 |
43.90 |
0/1 |
| chr1 |
120147862 |
rs72695123 |
G |
A |
. |
PASS |
0.0726000 |
0.0648000 |
0.0020000 |
0.0934000 |
0.0276000 |
0.0527000 |
36.43 |
69.05 |
28 |
748.42 |
7.14 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
120165826 |
rs12076924 |
C |
T |
. |
PASS |
0.8434000 |
0.6484000 |
0.7738000 |
0.5845000 |
0.6667000 |
0.7159000 |
36.77 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120166453 |
rs76236163 |
G |
C |
. |
PASS |
0.0030000 |
0.0677000 |
0.0020000 |
0.0974000 |
0.0399000 |
0.0379000 |
37.0 |
70.0 |
110 |
1000.00 |
4.73 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
120166681 |
rs12067843 |
G |
A |
. |
PASS |
0.7927000 |
0.5893000 |
0.7758000 |
0.5030000 |
0.6360000 |
0.6723000 |
36.47 |
70.0 |
147 |
1000.00 |
2.74 |
46.26 |
0 |
46.26 |
0/1 |
| chr1 |
120242537 |
rs10802132 |
C |
T |
. |
PASS |
0.6778000 |
0.3098000 |
0.3333000 |
0.3300000 |
0.3272000 |
0.4191000 |
37.0 |
70.0 |
43 |
255.81 |
3.72 |
23.26 |
0 |
23.26 |
0/1 |
| chr1 |
120242571 |
rs611365 |
C |
T |
. |
PASS |
0.8495000 |
0.6916000 |
0.9236000 |
0.5626000 |
0.6656000 |
0.7490000 |
37.0 |
70.0 |
40 |
348.37 |
21.67 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
120254545 |
rs562038 |
G |
C |
. |
PASS |
0.9077000 |
0.7550000 |
0.9266000 |
0.6859000 |
0.7628000 |
0.8175000 |
37.0 |
70.0 |
17 |
288.15 |
13.07 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
120277194 |
rs59445927 |
TTAA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
70.0 |
12 |
169.48 |
2.38 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
120285546 |
rs543703 |
G |
A |
. |
PASS |
0.7716000 |
0.7478000 |
0.6220000 |
0.6680000 |
0.7965000 |
0.7222000 |
36.86 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120293367 |
rs667246 |
T |
C |
. |
PASS |
0.6369000 |
0.7378000 |
0.6429000 |
0.6710000 |
0.7894000 |
0.6887000 |
36.62 |
69.38 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120296033 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.41 |
70.0 |
120 |
1000.00 |
2.43 |
92.50 |
1 |
92.50 |
1/1 |
| chr1 |
120296033 |
rs71745821,rs71723242 |
AACAC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.79 |
70.0 |
119 |
1000.00 |
2.24 |
35.29 |
1 |
95.80 |
0/1 |
| chr1 |
120296033 |
. |
AACAC |
AAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
119 |
1000.00 |
3.97 |
57.98 |
1 |
95.80 |
0/1 |
| chr1 |
120296034 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.42 |
70.0 |
119 |
1000.00 |
0.74 |
94.12 |
1 |
94.12 |
1/1 |
| chr1 |
120302419 |
rs12121219 |
A |
G |
. |
PASS |
0.1626000 |
0.0591000 |
0.0268000 |
0.0944000 |
0.1575000 |
0.1062000 |
37.0 |
69.29 |
48 |
992.63 |
16.67 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
120337384 |
rs947270 |
T |
C |
. |
PASS |
0.2133000 |
0.5821000 |
0.7589000 |
0.4394000 |
0.4131000 |
0.4587000 |
37.0 |
70.0 |
14 |
259.55 |
3.57 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
120337403 |
rs947271 |
A |
G |
. |
PASS |
0.2141000 |
0.5821000 |
0.7589000 |
0.4404000 |
0.4131000 |
0.4591000 |
37.0 |
70.0 |
11 |
226.81 |
0.00 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
120378678 |
rs3009182 |
C |
T |
. |
PASS |
0.4107000 |
0.7118000 |
0.4673000 |
0.8121000 |
0.8405000 |
0.6284000 |
37.0 |
70.0 |
61 |
911.72 |
2.91 |
44.26 |
0 |
44.26 |
0/1 |
| chr1 |
120380008 |
rs3009184 |
T |
A |
. |
PASS |
0.3979000 |
0.7118000 |
0.4673000 |
0.8121000 |
0.8405000 |
0.6250000 |
36.0 |
70.0 |
54 |
779.32 |
11.11 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
120384205 |
rs2994820 |
A |
G |
. |
PASS |
0.3979000 |
0.7118000 |
0.4673000 |
0.8121000 |
0.8405000 |
0.6250000 |
37.0 |
69.88 |
49 |
864.30 |
13.71 |
51.02 |
0 |
51.02 |
0/1 |
| chr1 |
120404614 |
rs3850866 |
T |
C |
. |
PASS |
0.3585000 |
0.5749000 |
0.3710000 |
0.7396000 |
0.7413000 |
0.5423000 |
37.0 |
69.59 |
44 |
754.04 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
120436751 |
rs35273427 |
T |
C |
. |
PASS |
0.3306000 |
0.0865000 |
0.0407000 |
0.0606000 |
0.2178000 |
0.1621000 |
35.69 |
69.98 |
136 |
1000.00 |
9.71 |
40.44 |
0 |
40.44 |
0/1 |
| chr1 |
120437718 |
rs2793823 |
G |
A |
. |
PASS |
0.7171000 |
0.2133000 |
0.1052000 |
0.1322000 |
0.3282000 |
0.3307000 |
36.33 |
70.0 |
71 |
1000.00 |
6.96 |
50.70 |
0 |
50.70 |
0/1 |
| chr1 |
120437884 |
rs2641348 |
A |
G |
. |
PASS |
0.3805000 |
0.1196000 |
0.0466000 |
0.1143000 |
0.2382000 |
0.1959000 |
37.0 |
70.0 |
84 |
1000.00 |
10.38 |
59.52 |
0 |
59.52 |
0/1 |
| chr1 |
120458004 |
rs6685892 |
A |
T |
. |
PASS |
0.3775000 |
0.1182000 |
0.0476000 |
0.1103000 |
0.2290000 |
0.1925000 |
36.62 |
70.0 |
66 |
1000.00 |
12.69 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
120461253 |
rs2793829 |
C |
T |
. |
PASS |
0.3775000 |
0.1196000 |
0.0476000 |
0.1103000 |
0.2270000 |
0.1923000 |
37.0 |
70.0 |
14 |
301.32 |
23.81 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
120471857 |
rs2493392 |
C |
T |
. |
PASS |
0.3767000 |
0.1196000 |
0.0476000 |
0.1103000 |
0.2290000 |
0.1925000 |
37.0 |
70.0 |
25 |
435.29 |
4.92 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
120477998 |
rs2453056 |
C |
A |
. |
PASS |
0.6021000 |
0.1945000 |
0.1101000 |
0.1312000 |
0.3425000 |
0.3013000 |
35.4 |
70.0 |
31 |
472.61 |
9.46 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
120478285 |
rs5025718 |
T |
C |
. |
PASS |
0.0688000 |
0.7795000 |
0.8879000 |
0.8658000 |
0.6431000 |
0.6044000 |
37.0 |
70.0 |
11 |
226.81 |
2.60 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
120480394 |
rs2453057 |
T |
C |
. |
PASS |
0.9236000 |
0.9942000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9786000 |
36.37 |
70.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120480709 |
rs2453058 |
C |
T |
. |
PASS |
0.3767000 |
0.1196000 |
0.0476000 |
0.1103000 |
0.2280000 |
0.1923000 |
35.67 |
70.0 |
11 |
298.34 |
8.08 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
120484421 |
rs2493420 |
G |
A |
. |
PASS |
0.4902000 |
0.1916000 |
0.1101000 |
0.1302000 |
0.3436000 |
0.2714000 |
37.0 |
70.0 |
23 |
274.23 |
2.90 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
120496119 |
rs7534585 |
A |
T |
. |
PASS |
0.3775000 |
0.1196000 |
0.0476000 |
0.1103000 |
0.2270000 |
0.1923000 |
36.56 |
70.0 |
54 |
916.63 |
11.11 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
120496127 |
rs7534586 |
A |
C |
. |
PASS |
0.3775000 |
0.1196000 |
0.0476000 |
0.1103000 |
0.2270000 |
0.1923000 |
36.17 |
70.0 |
59 |
973.12 |
4.68 |
49.15 |
0 |
49.15 |
0/1 |
| chr1 |
120506108 |
rs2934381 |
G |
A |
. |
PASS |
0.3767000 |
0.1196000 |
0.0476000 |
0.1103000 |
0.2270000 |
0.1921000 |
37.0 |
70.0 |
12 |
223.80 |
0.00 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
120512104 |
rs2493409 |
T |
C |
. |
PASS |
0.9244000 |
0.9942000 |
1.0000000 |
0.9980000 |
0.9990000 |
0.9786000 |
36.59 |
70.0 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120529750 |
rs2453040 |
A |
C |
. |
PASS |
0.3722000 |
0.1182000 |
0.0476000 |
0.1093000 |
0.2280000 |
0.1907000 |
37.0 |
70.0 |
23 |
228.32 |
5.43 |
34.78 |
0 |
34.78 |
0/1 |
| chr1 |
120539213 |
rs2691745 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.25 |
20 |
70.26 |
30.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
120539331 |
rs2124109 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.06 |
67.24 |
88 |
1000.00 |
6.91 |
57.95 |
0 |
57.95 |
0/1 |
| chr1 |
120570921 |
rs138481753 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
52.18 |
58 |
486.89 |
3.45 |
29.31 |
0 |
29.31 |
0/1 |
| chr1 |
120570922 |
rs11364041 |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.18 |
52.18 |
59 |
459.46 |
6.78 |
28.81 |
1 |
28.81 |
0/1 |
| chr1 |
120570922 |
. |
GCA |
GT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
62 |
459.46 |
9.68 |
27.42 |
1 |
27.42 |
0/1 |
| chr1 |
120570924 |
rs146749684 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.59 |
52.18 |
61 |
465.85 |
6.56 |
27.87 |
1 |
27.87 |
0/1 |
| chr1 |
120571063 |
rs10657904 |
C |
CAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.36 |
49.11 |
148 |
1000.00 |
20.36 |
31.76 |
0 |
37.16 |
0/1 |
| chr1 |
120571076 |
rs2691711 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
50.7 |
110 |
585.16 |
12.25 |
20.91 |
0 |
20.91 |
0/1 |
| chr1 |
120572547 |
rs141882865 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.0 |
35 |
112.81 |
7.62 |
17.14 |
0 |
17.14 |
0/1 |
| chr1 |
120572572 |
rs146242578 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
48.36 |
41 |
291.59 |
5.32 |
26.83 |
0 |
26.83 |
0/1 |
| chr1 |
120572612 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.33 |
47 |
76.69 |
27.66 |
12.77 |
0 |
12.77 |
0/1 |
| chr1 |
120607321 |
rs76170244 |
T |
C |
. |
PASS |
0.5900000 |
0.4352000 |
0.4583000 |
0.4632000 |
0.5082000 |
0.5006000 |
37.0 |
52.0 |
58 |
586.60 |
12.52 |
32.76 |
0 |
32.76 |
0/1 |
| chr1 |
120607458 |
. |
C |
CA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.0 |
11 |
85.91 |
18.18 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
120611830 |
rs61790277 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.27 |
24 |
521.84 |
8.33 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
120611876 |
rs11801062 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.42 |
63.89 |
60 |
1000.00 |
10.70 |
63.33 |
0 |
63.33 |
0/1 |
| chr1 |
120611964 |
rs11810554 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.22 |
66.89 |
170 |
1000.00 |
6.80 |
52.94 |
0 |
54.12 |
0/1 |
| chr1 |
120612006 |
rs4021006 |
G |
A |
. |
PASS |
0.2632000 |
0.4049000 |
0.4315000 |
0.4423000 |
0.4744000 |
0.3940000 |
35.98 |
66.6 |
191 |
1000.00 |
11.30 |
49.21 |
0 |
49.21 |
0/1 |
| chr1 |
120612034 |
rs201668322 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.83 |
153 |
755.98 |
9.80 |
19.61 |
0 |
19.61 |
0/1 |
| chr1 |
120612040 |
. |
T |
TCCTCCGCCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
61.94 |
141 |
1000.00 |
0.64 |
28.37 |
0 |
65.25 |
0/1 |
| chr1 |
120612168 |
rs11801102 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
49.86 |
17 |
196.74 |
11.76 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
120854528 |
rs78105048 |
T |
C |
. |
PASS |
0.0000000 |
0.0058000 |
0.0000000 |
0.0199000 |
0.0031000 |
0.0053914 |
37.0 |
64.86 |
45 |
751.03 |
2.22 |
48.89 |
0 |
48.89 |
0/1 |
| chr1 |
120904791 |
rs2791063 |
A |
G |
. |
PASS |
0.9682000 |
0.7954000 |
0.9692000 |
0.7604000 |
0.8241000 |
0.8746000 |
37.0 |
47.42 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
120906120 |
rs139709905 |
C |
G |
. |
PASS |
0.0000000 |
0.0058000 |
0.0000000 |
0.0209000 |
0.0031000 |
0.0055910 |
36.76 |
65.52 |
102 |
1000.00 |
6.27 |
49.02 |
0 |
49.02 |
0/1 |
| chr1 |
120927081 |
rs76856338 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
64.67 |
35 |
476.73 |
1.90 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
120934573 |
rs201922049 |
C |
T |
. |
PASS |
0.0068000 |
0.1441000 |
0.1567000 |
0.1302000 |
0.3211000 |
0.1422000 |
37.0 |
53.0 |
41 |
94.75 |
30.89 |
14.63 |
0 |
14.63 |
0/1 |
| chr1 |
121115761 |
rs150166046 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
60.44 |
43 |
490.28 |
3.20 |
37.21 |
0 |
37.21 |
0/1 |
| chr1 |
121115786 |
rs199825051 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
61.0 |
80 |
420.68 |
30.00 |
21.25 |
0 |
21.25 |
0/1 |
| chr1 |
121115958 |
rs200236715 |
T |
C |
. |
PASS |
0.2126000 |
0.1052000 |
0.2748000 |
0.1382000 |
0.0593000 |
0.1653000 |
37.0 |
64.71 |
160 |
906.15 |
6.40 |
21.25 |
0 |
21.25 |
0/1 |
| chr1 |
121115981 |
rs201138873 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
69.36 |
158 |
398.91 |
12.66 |
13.92 |
0 |
13.92 |
0/1 |
| chr1 |
121116121 |
rs201302047 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.5 |
42 |
91.75 |
9.52 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
121116647 |
rs2772072 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
27.21 |
160 |
1000.00 |
21.19 |
24.38 |
0 |
24.38 |
0/1 |
| chr1 |
121116678 |
rs61806689 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.12 |
69.49 |
224 |
1000.00 |
5.23 |
36.61 |
0 |
36.61 |
0/1 |
| chr1 |
121116688 |
rs61806690 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
57.27 |
258 |
1000.00 |
2.97 |
50.39 |
0 |
50.39 |
0/1 |
| chr1 |
121116933 |
rs79097880 |
T |
C |
. |
PASS |
0.5575000 |
0.6081000 |
0.7738000 |
0.6123000 |
0.4611000 |
0.6002000 |
37.0 |
69.83 |
20 |
408.57 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
121116953 |
rs78187610 |
A |
G |
. |
PASS |
0.7458000 |
0.6239000 |
0.7827000 |
0.6133000 |
0.4632000 |
0.6546000 |
37.0 |
69.78 |
13 |
304.33 |
0.00 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
121129557 |
rs200881439 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.33 |
64.22 |
16 |
271.28 |
15.28 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
121286901 |
rs7528274 |
A |
T |
. |
PASS |
0.5348000 |
0.5720000 |
0.6052000 |
0.6193000 |
0.3753000 |
0.5399000 |
37.0 |
70.0 |
18 |
243.36 |
0.00 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
121290234 |
rs12146056 |
G |
A |
. |
PASS |
0.5212000 |
0.5720000 |
0.5942000 |
0.6143000 |
0.3824000 |
0.5345000 |
34.47 |
69.0 |
54 |
550.60 |
7.80 |
35.19 |
0 |
35.19 |
0/1 |
| chr1 |
121484142 |
rs9662444 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.2 |
22 |
110.17 |
16.36 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
121484153 |
rs9701684 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.2 |
22 |
106.02 |
16.36 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
121484159 |
rs6605014 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
60.69 |
21 |
365.66 |
12.12 |
52.38 |
0 |
61.90 |
0/1 |
| chr1 |
121484193 |
rs4897988 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.18 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
121484423 |
rs7368003 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
67.18 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
121484503 |
rs4898086 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
68.1 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
121484533 |
rs4897894 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
69.14 |
62 |
353.70 |
23.50 |
22.58 |
0 |
22.58 |
0/1 |
| chr1 |
121484564 |
rs56210065 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
69.43 |
107 |
512.50 |
13.17 |
19.63 |
0 |
21.50 |
0/1 |
| chr1 |
121484566 |
rs4115066 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
69.38 |
105 |
512.51 |
15.24 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
121484591 |
rs4898109 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.53 |
68.43 |
129 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
121484598 |
. |
TCT |
TGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
68.2 |
126 |
1000.00 |
1.59 |
33.33 |
0 |
35.71 |
0/1 |
| chr1 |
121484602 |
rs71239173 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
68.9 |
131 |
1000.00 |
6.52 |
45.04 |
0 |
45.80 |
0/1 |
| chr1 |
121484650 |
rs4092774 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
67.32 |
136 |
1000.00 |
7.11 |
27.21 |
0 |
27.94 |
0/1 |
| chr1 |
121484685 |
rs9701937 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.58 |
68.28 |
115 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
121484688 |
rs2128558 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
68.13 |
117 |
187.01 |
23.08 |
11.97 |
0 |
12.82 |
0/1 |
| chr1 |
121484690 |
rs71230276 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.29 |
113 |
208.04 |
4.30 |
12.39 |
0 |
12.39 |
0/1 |
| chr1 |
121484712 |
rs4788230 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
68.51 |
109 |
1000.00 |
1.51 |
98.17 |
0 |
100.00 |
1/1 |
| chr1 |
121484723 |
rs4092775 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.99 |
68.76 |
101 |
1000.00 |
2.32 |
93.07 |
0 |
94.06 |
1/1 |
| chr1 |
121484729 |
rs4092776 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.88 |
68.83 |
100 |
1000.00 |
0.13 |
93.00 |
0 |
99.00 |
1/1 |
| chr1 |
121484732 |
rs4103110 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
68.95 |
99 |
1000.00 |
2.83 |
40.40 |
0 |
42.42 |
0/1 |
| chr1 |
121484779 |
rs4788235 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
69.51 |
105 |
1000.00 |
7.62 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
121484835 |
rs3916394 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
69.25 |
103 |
1000.00 |
2.09 |
38.83 |
0 |
38.83 |
0/1 |
| chr1 |
121484847 |
rs2022553 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
69.31 |
114 |
1000.00 |
3.51 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
121484852 |
rs28838403 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.4 |
69.73 |
115 |
185.17 |
2.61 |
12.17 |
0 |
13.04 |
0/1 |
| chr1 |
121484855 |
rs4123965 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
69.33 |
117 |
1000.00 |
0.49 |
35.90 |
0 |
36.75 |
0/1 |
| chr1 |
121484858 |
rs28861668 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.15 |
68.38 |
123 |
112.16 |
27.14 |
10.57 |
0 |
10.57 |
0/1 |
| chr1 |
121484867 |
rs3916395 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.83 |
124 |
148.22 |
27.92 |
10.48 |
0 |
14.52 |
0/1 |
| chr1 |
121484880 |
rs2128557 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
68.71 |
121 |
972.75 |
18.18 |
27.27 |
0 |
28.10 |
0/1 |
| chr1 |
121484951 |
rs7368048 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.55 |
68.76 |
108 |
1000.00 |
0.76 |
99.07 |
0 |
99.07 |
1/1 |
| chr1 |
121484979 |
rs9793658 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.66 |
68.09 |
94 |
1000.00 |
0.06 |
37.23 |
0 |
37.23 |
0/1 |
| chr1 |
121485000 |
. |
CGC |
CAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
67.95 |
87 |
1000.00 |
4.45 |
36.78 |
0 |
100.00 |
0/1 |
| chr1 |
121485000 |
. |
CGC |
CAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
67.95 |
87 |
1000.00 |
2.39 |
60.92 |
0 |
100.00 |
0/1 |
| chr1 |
121485015 |
rs28819139 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.27 |
69.24 |
89 |
1000.00 |
2.59 |
37.08 |
0 |
37.08 |
0/1 |
| chr1 |
121485058 |
rs4788256 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.1 |
101 |
81.24 |
23.17 |
9.90 |
0 |
9.90 |
0/1 |
| chr1 |
121485071 |
rs77401738 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.58 |
69.04 |
115 |
1000.00 |
1.48 |
97.39 |
0 |
100.00 |
1/1 |
| chr1 |
121485088 |
rs7366682 |
T |
A |
. |
PASS |
0.5552000 |
0.4841000 |
0.5228000 |
0.5070000 |
0.5133000 |
0.5210000 |
36.76 |
68.62 |
150 |
1000.00 |
0.44 |
97.33 |
0 |
99.33 |
1/1 |
| chr1 |
121485099 |
rs1842865 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
68.41 |
184 |
1000.00 |
14.83 |
21.20 |
0 |
21.20 |
0/1 |
| chr1 |
121485101 |
rs4787515 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.94 |
207 |
844.06 |
12.32 |
17.39 |
0 |
17.39 |
0/1 |
| chr1 |
121485213 |
rs4897989 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.86 |
554 |
525.95 |
17.18 |
9.57 |
0 |
10.29 |
0/1 |
| chr1 |
121485219 |
rs4103100 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.35 |
68.08 |
528 |
110.36 |
19.79 |
8.14 |
0 |
9.66 |
0/1 |
| chr1 |
121485227 |
rs74210638 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.34 |
68.73 |
528 |
1000.00 |
1.97 |
47.73 |
0 |
47.92 |
0/1 |
| chr1 |
121485241 |
rs77015350 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.49 |
68.71 |
535 |
1000.00 |
2.69 |
56.07 |
0 |
62.06 |
0/1 |
| chr1 |
121485246 |
rs4115084 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
67.31 |
541 |
1000.00 |
6.83 |
50.09 |
0 |
50.09 |
0/1 |
| chr1 |
121485248 |
rs4115049 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.75 |
68.08 |
550 |
1000.00 |
0.73 |
13.82 |
0 |
14.00 |
0/1 |
| chr1 |
121485251 |
rs4787556 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.63 |
68.04 |
560 |
1000.00 |
0.76 |
97.50 |
0 |
97.86 |
1/1 |
| chr1 |
121485275 |
rs55861919 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.74 |
578 |
57.09 |
9.01 |
7.44 |
0 |
9.34 |
0/1 |
| chr1 |
121485308 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.82 |
532 |
756.19 |
3.76 |
10.71 |
0 |
11.28 |
0/1 |
| chr1 |
121485333 |
rs4115044 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.38 |
472 |
901.03 |
0.12 |
11.86 |
0 |
12.92 |
0/1 |
| chr1 |
121485376 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.83 |
68.07 |
273 |
1000.00 |
0.94 |
15.75 |
0 |
26.01 |
0/1 |
| chr1 |
121485379 |
rs200807730 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.3 |
67.29 |
258 |
1000.00 |
3.81 |
53.88 |
0 |
54.65 |
0/1 |
| chr1 |
121485387 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.05 |
208 |
538.12 |
0.27 |
13.46 |
0 |
17.79 |
0/1 |
| chr1 |
121485398 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.93 |
149 |
103.84 |
14.09 |
9.40 |
0 |
9.40 |
0/1 |
| chr1 |
121485416 |
rs6605018 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
66.21 |
59 |
752.25 |
19.92 |
40.68 |
0 |
40.68 |
0/1 |
| chr1 |
121485424 |
rs59029159 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.17 |
44 |
81.56 |
9.09 |
13.64 |
0 |
13.64 |
0/1 |
| chr1 |
142584601 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
37.17 |
30 |
123.70 |
73.33 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
142584739 |
rs76254947 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
64.57 |
35 |
418.80 |
8.57 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
142584749 |
rs61803488 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.06 |
18 |
712.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
142618709 |
rs3120207 |
C |
T |
. |
PASS |
0.4531000 |
0.5058000 |
0.4841000 |
0.5199000 |
0.4785000 |
0.4850000 |
33.57 |
69.14 |
11 |
202.79 |
10.39 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
142618740 |
rs1970223 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.36 |
18 |
368.68 |
7.07 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
142618814 |
. |
T |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0003994 |
37.0 |
63.17 |
42 |
91.75 |
4.76 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
142618821 |
rs200049379 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.0 |
58 |
206.52 |
17.24 |
17.24 |
0 |
17.24 |
0/1 |
| chr1 |
142618888 |
rs76769845 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.49 |
63.15 |
291 |
1000.00 |
1.83 |
40.21 |
0 |
40.21 |
0/1 |
| chr1 |
142618920 |
rs78490175 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.19 |
63.12 |
472 |
1000.00 |
2.46 |
25.21 |
0 |
25.21 |
0/1 |
| chr1 |
142618940 |
rs72995752 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
63.12 |
551 |
1000.00 |
4.89 |
21.78 |
0 |
21.78 |
0/1 |
| chr1 |
142618988 |
rs75162317 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.88 |
441 |
1000.00 |
3.55 |
14.97 |
0 |
14.97 |
0/1 |
| chr1 |
142618990 |
rs373022888 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
58.39 |
429 |
1000.00 |
7.06 |
13.75 |
0 |
13.75 |
0/1 |
| chr1 |
142619020 |
rs61806575 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.22 |
68.8 |
257 |
1000.00 |
1.63 |
47.86 |
0 |
47.86 |
0/1 |
| chr1 |
142619144 |
rs4295900 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.14 |
30 |
169.63 |
21.90 |
23.33 |
0 |
23.33 |
0/1 |
| chr1 |
142619169 |
rs4300240 |
C |
G |
. |
PASS |
0.9592000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9886000 |
37.0 |
66.19 |
21 |
837.55 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
142619185 |
rs12408793 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.8 |
14 |
130.10 |
14.29 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
142620969 |
rs3120210 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.33 |
53.33 |
21 |
252.09 |
19.05 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
142620975 |
rs61806579 |
T |
G |
. |
PASS |
0.4251000 |
0.4914000 |
0.4673000 |
0.4851000 |
0.4622000 |
0.4621000 |
37.0 |
62.22 |
26 |
222.29 |
36.54 |
30.77 |
0 |
34.62 |
0/1 |
| chr1 |
142620997 |
rs6600650 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
29 |
256.17 |
35.25 |
31.03 |
0 |
31.03 |
0/1 |
| chr1 |
142621095 |
rs4241034 |
T |
C |
. |
PASS |
0.4486000 |
0.4971000 |
0.4762000 |
0.4950000 |
0.4744000 |
0.4752000 |
36.57 |
51.54 |
33 |
1000.00 |
9.09 |
84.85 |
0 |
84.85 |
0/1 |
| chr1 |
142689910 |
rs201076097 |
T |
TC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.47 |
51 |
592.07 |
11.35 |
37.25 |
0 |
37.25 |
0/1 |
| chr1 |
142689916 |
. |
G |
T |
. |
PASS |
0.0023000 |
0.0043000 |
0.0010000 |
0.0020000 |
0.0020000 |
0.0021965 |
35.29 |
52.29 |
58 |
69.19 |
2.96 |
12.07 |
0 |
12.07 |
0/1 |
| chr1 |
142713152 |
rs142135372 |
T |
G |
. |
PASS |
0.1785000 |
0.7550000 |
0.4097000 |
0.7475000 |
0.4959000 |
0.4812000 |
37.0 |
55.31 |
15 |
461.24 |
10.26 |
86.67 |
0 |
86.67 |
0/1 |
| chr1 |
142713524 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
39.69 |
27 |
417.27 |
7.41 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
142713691 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.95 |
161 |
318.35 |
9.25 |
12.42 |
0 |
12.42 |
0/1 |
| chr1 |
142713742 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
47.14 |
63 |
350.70 |
53.97 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
142727018 |
rs72995781 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
42.43 |
123 |
158.09 |
21.60 |
11.38 |
0 |
11.38 |
0/1 |
| chr1 |
142727090 |
rs112164832 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
44.0 |
102 |
191.52 |
7.39 |
12.75 |
0 |
12.75 |
0/1 |
| chr1 |
142727161 |
rs10453897 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.2 |
33 |
77.05 |
41.21 |
15.15 |
0 |
15.15 |
0/1 |
| chr1 |
142729818 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.57 |
12 |
223.80 |
7.14 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
142729820 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.57 |
13 |
216.64 |
4.40 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
142729889 |
rs10430210 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
55.95 |
38 |
760.09 |
15.79 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
142729959 |
rs375819488 |
G |
A |
. |
PASS |
0.1936000 |
0.5202000 |
0.2817000 |
0.5239000 |
0.2965000 |
0.3015000 |
35.29 |
26.07 |
32 |
431.98 |
23.21 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
142792094 |
rs200607742 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.75 |
15 |
89.46 |
23.33 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
142792110 |
rs77134205 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.5 |
18 |
170.00 |
11.11 |
33.33 |
0 |
44.44 |
0/1 |
| chr1 |
142792235 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.21 |
108 |
227.25 |
28.84 |
12.96 |
0 |
12.96 |
0/1 |
| chr1 |
142792406 |
rs61816010 |
A |
G |
. |
PASS |
0.5847000 |
0.4539000 |
0.3958000 |
0.4801000 |
0.4693000 |
0.4850000 |
36.83 |
57.31 |
143 |
1000.00 |
8.74 |
50.35 |
0 |
50.35 |
0/1 |
| chr1 |
142792418 |
rs76648109 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.8 |
115 |
247.95 |
13.91 |
13.04 |
0 |
13.04 |
0/1 |
| chr1 |
142806254 |
rs114813183 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.2 |
12 |
140.26 |
83.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
142810409 |
rs71213748 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
36.71 |
38 |
133.54 |
15.79 |
18.42 |
0 |
18.42 |
0/1 |
| chr1 |
142812955 |
rs199982663 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.83 |
48 |
69.53 |
4.17 |
12.50 |
0 |
12.50 |
0/1 |
| chr1 |
142813072 |
rs375636286 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.32 |
53.43 |
285 |
1000.00 |
0.85 |
18.60 |
0 |
18.60 |
0/1 |
| chr1 |
142813098 |
rs200968877 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.43 |
453 |
1000.00 |
3.96 |
21.63 |
0 |
21.63 |
0/1 |
| chr1 |
142813130 |
rs201958737 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.9 |
42.41 |
492 |
1000.00 |
0.14 |
23.78 |
0 |
23.78 |
0/1 |
| chr1 |
142813404 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
68.0 |
74 |
396.98 |
9.80 |
21.62 |
0 |
21.62 |
0/1 |
| chr1 |
142813414 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.88 |
54 |
469.17 |
3.70 |
29.63 |
0 |
29.63 |
0/1 |
| chr1 |
142819308 |
. |
GCA |
GTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.33 |
10 |
188.05 |
20.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
142823571 |
. |
G |
GGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.75 |
67.0 |
76 |
1000.00 |
18.42 |
23.68 |
0 |
48.68 |
0/1 |
| chr1 |
142823591 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.44 |
56 |
136.15 |
10.71 |
14.29 |
0 |
16.07 |
0/1 |
| chr1 |
142824953 |
rs139940416 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.57 |
68.14 |
52 |
79.40 |
3.30 |
13.46 |
0 |
13.46 |
0/1 |
| chr1 |
142825121 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.83 |
22 |
147.79 |
0.00 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
142826248 |
rs374074638 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.29 |
35 |
154.57 |
11.43 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
142826369 |
rs149192684 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.58 |
62.62 |
104 |
1000.00 |
0.52 |
81.73 |
0 |
81.73 |
0/1 |
| chr1 |
142826454 |
rs371347440 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.4 |
57.53 |
108 |
245.02 |
7.41 |
13.89 |
0 |
13.89 |
0/1 |
| chr1 |
142826519 |
rs138533879 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
59.35 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
142826663 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.0 |
12 |
52.57 |
83.33 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
142826670 |
. |
T |
A |
. |
PASS |
0.0000000 |
0.0202000 |
0.0000000 |
0.0239000 |
0.0072000 |
0.0089856 |
37.0 |
53.0 |
10 |
58.59 |
80.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
142826675 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.0 |
12 |
52.57 |
66.67 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
142826688 |
rs151060359 |
T |
G |
. |
PASS |
0.0809000 |
0.1571000 |
0.3194000 |
0.1700000 |
0.0726000 |
0.1558000 |
34.82 |
52.45 |
15 |
353.69 |
35.15 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
142826763 |
. |
AAG |
ACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.5 |
20 |
67.26 |
60.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
142826804 |
. |
GTA |
GAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
58.87 |
26 |
55.22 |
7.69 |
15.38 |
1 |
57.69 |
0/1 |
| chr1 |
142826805 |
rs201451744 |
T |
A |
. |
PASS |
0.2534000 |
0.3804000 |
0.4702000 |
0.3708000 |
0.2546000 |
0.3385000 |
36.14 |
58.07 |
23 |
466.93 |
1.24 |
60.87 |
1 |
60.87 |
0/1 |
| chr1 |
142826847 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.2 |
23 |
103.00 |
46.96 |
21.74 |
0 |
21.74 |
0/1 |
| chr1 |
142826849 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
41.5 |
23 |
61.23 |
86.96 |
17.39 |
0 |
17.39 |
0/1 |
| chr1 |
142826855 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
41.5 |
22 |
68.39 |
81.82 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
142827042 |
rs200601854 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.67 |
68 |
510.57 |
3.59 |
26.47 |
0 |
26.47 |
0/1 |
| chr1 |
142827044 |
rs199751716 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
54.64 |
68 |
657.78 |
2.67 |
32.35 |
0 |
32.35 |
0/1 |
| chr1 |
142827075 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
49.5 |
92 |
179.86 |
10.14 |
13.04 |
0 |
13.04 |
0/1 |
| chr1 |
142827207 |
rs200556647 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
35.33 |
12 |
170.02 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
142849807 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
43.4 |
24 |
92.13 |
11.67 |
20.83 |
0 |
20.83 |
0/1 |
| chr1 |
142871812 |
rs145026561 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
54.0 |
26 |
545.59 |
7.69 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
142888752 |
rs139722647 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.9 |
42 |
1000.00 |
0.48 |
95.24 |
0 |
95.24 |
1/1 |
| chr1 |
142888871 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
48.88 |
43 |
160.25 |
39.53 |
18.60 |
0 |
18.60 |
0/1 |
| chr1 |
142888930 |
rs145951289 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.33 |
10 |
58.59 |
20.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
142890754 |
rs374955974 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.0 |
21 |
113.17 |
20.95 |
23.81 |
0 |
23.81 |
0/1 |
| chr1 |
142890773 |
rs372911533 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.0 |
38 |
57.86 |
2.11 |
13.16 |
0 |
13.16 |
0/1 |
| chr1 |
142890805 |
rs192362005 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.09 |
86 |
164.00 |
26.00 |
12.79 |
0 |
12.79 |
0/1 |
| chr1 |
142890830 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.33 |
138 |
53.40 |
3.62 |
8.70 |
0 |
8.70 |
0/1 |
| chr1 |
142890833 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.76 |
45.8 |
140 |
1000.00 |
2.24 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
142890842 |
. |
TGT |
TGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.87 |
47.57 |
166 |
363.13 |
4.19 |
15.06 |
0 |
27.71 |
0/1 |
| chr1 |
142890842 |
. |
TGT |
TAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.87 |
47.57 |
166 |
363.13 |
14.86 |
12.65 |
0 |
27.71 |
0/1 |
| chr1 |
142890881 |
rs148481898 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.58 |
234 |
56.84 |
0.40 |
8.12 |
0 |
8.12 |
0/1 |
| chr1 |
142890910 |
rs142613568 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
45.26 |
213 |
91.89 |
10.43 |
8.92 |
0 |
8.92 |
0/1 |
| chr1 |
142890935 |
. |
A |
AC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
46.98 |
217 |
1000.00 |
7.03 |
22.12 |
0 |
22.12 |
0/1 |
| chr1 |
142890972 |
rs141531557 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
50.83 |
174 |
1000.00 |
8.57 |
30.46 |
0 |
30.46 |
0/1 |
| chr1 |
142890983 |
. |
CGC |
CCT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
53.68 |
159 |
281.47 |
15.43 |
11.95 |
0 |
12.58 |
0/1 |
| chr1 |
142891025 |
. |
GCC |
GTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
51.6 |
86 |
54.88 |
8.72 |
9.30 |
0 |
23.26 |
0/1 |
| chr1 |
142891025 |
. |
GCC |
GCT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
51.6 |
86 |
54.88 |
0.39 |
13.95 |
0 |
23.26 |
0/1 |
| chr1 |
142891032 |
rs201970606 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
54.5 |
76 |
323.56 |
18.42 |
18.42 |
0 |
18.42 |
0/1 |
| chr1 |
142891038 |
rs144758356 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.73 |
68 |
385.28 |
25.29 |
22.06 |
0 |
22.06 |
0/1 |
| chr1 |
142891057 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.5 |
47 |
72.54 |
12.77 |
12.77 |
0 |
12.77 |
0/1 |
| chr1 |
142891076 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.5 |
22 |
64.24 |
18.18 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
142914749 |
rs77612636 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.33 |
11 |
55.58 |
18.18 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
142914758 |
rs71527320 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.75 |
11 |
101.50 |
18.18 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
142914837 |
rs372414602 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.5 |
42 |
91.74 |
14.29 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
142914847 |
rs61814404 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.56 |
54 |
932.79 |
3.70 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
142914872 |
rs78182557 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.53 |
87 |
411.63 |
16.23 |
19.54 |
0 |
19.54 |
0/1 |
| chr1 |
142914874 |
rs75433903 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
69.5 |
93 |
423.32 |
11.83 |
19.35 |
0 |
19.35 |
0/1 |
| chr1 |
142914884 |
rs61814405 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
69.21 |
108 |
1000.00 |
19.87 |
30.56 |
0 |
30.56 |
0/1 |
| chr1 |
142914904 |
rs34276747 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.06 |
122 |
264.51 |
6.56 |
13.11 |
0 |
13.11 |
0/1 |
| chr1 |
142914952 |
rs71660176 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
69.07 |
117 |
183.99 |
6.59 |
11.97 |
0 |
11.97 |
0/1 |
| chr1 |
142914974 |
rs375111986 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
69.73 |
78 |
343.16 |
7.18 |
19.23 |
0 |
19.23 |
0/1 |
| chr1 |
142914976 |
rs76074568 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.67 |
77 |
362.32 |
8.31 |
19.48 |
0 |
19.48 |
0/1 |
| chr1 |
142914994 |
rs76995737 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
69.29 |
42 |
682.26 |
9.52 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
142915004 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.33 |
69.22 |
37 |
208.07 |
4.20 |
24.32 |
0 |
24.32 |
0/1 |
| chr1 |
142915013 |
. |
TGG |
TTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
69.32 |
35 |
639.69 |
1.20 |
54.29 |
1 |
54.29 |
0/1 |
| chr1 |
142915014 |
rs77307550 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
69.32 |
31 |
639.69 |
1.02 |
61.29 |
1 |
61.29 |
0/1 |
| chr1 |
142915015 |
rs76762492 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.32 |
31 |
663.71 |
1.02 |
61.29 |
1 |
61.29 |
0/1 |
| chr1 |
142915019 |
rs75436540 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
69.24 |
31 |
572.31 |
4.55 |
54.84 |
0 |
54.84 |
0/1 |
| chr1 |
142915056 |
rs74226778 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
12 |
307.35 |
5.56 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
142925244 |
rs148247278 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
48.2 |
12 |
124.10 |
13.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
142925256 |
rs139435746 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
44.38 |
11 |
244.56 |
27.27 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
143119012 |
rs202117766 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
38.18 |
47 |
967.46 |
25.53 |
59.57 |
0 |
59.57 |
0/1 |
| chr1 |
143119035 |
rs200126281 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
35.69 |
71 |
284.84 |
22.75 |
18.31 |
0 |
18.31 |
0/1 |
| chr1 |
143119061 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
58.42 |
121 |
88.43 |
5.65 |
9.92 |
0 |
9.92 |
0/1 |
| chr1 |
143119101 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.12 |
163 |
580.99 |
1.84 |
15.95 |
0 |
19.63 |
0/1 |
| chr1 |
143119174 |
rs201824276 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
40.3 |
93 |
506.86 |
5.91 |
21.51 |
0 |
21.51 |
0/1 |
| chr1 |
143119228 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.0 |
14 |
50.70 |
52.38 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
143136010 |
rs202083782 |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
57.3 |
15 |
324.52 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
143136150 |
rs200353162 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
55.87 |
100 |
281.11 |
28.00 |
15.00 |
0 |
15.00 |
0/1 |
| chr1 |
143136203 |
rs200230717 |
A |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0031000 |
0.0005990 |
35.0 |
48.17 |
37 |
329.25 |
43.24 |
32.43 |
0 |
32.43 |
0/1 |
| chr1 |
143188412 |
rs200944354 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.0 |
13 |
174.87 |
12.82 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
143188470 |
rs200631320 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
62.79 |
26 |
462.05 |
6.59 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
143188556 |
rs145795485 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.09 |
18 |
372.82 |
1.01 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
143188558 |
rs61784870 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.5 |
18 |
76.28 |
5.56 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
143209415 |
rs139708986 |
T |
G |
. |
PASS |
0.2526000 |
0.1196000 |
0.0208000 |
0.1014000 |
0.0716000 |
0.1218000 |
37.0 |
48.17 |
12 |
177.89 |
16.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
143209522 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.75 |
23 |
65.38 |
63.04 |
17.39 |
0 |
17.39 |
0/1 |
| chr1 |
143209526 |
rs201519616 |
GTCTT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.6 |
22 |
100.60 |
78.18 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
143209585 |
rs201388665 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.43 |
21 |
192.56 |
66.67 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
143209642 |
rs202056042 |
G |
A |
. |
PASS |
0.0000000 |
0.0014000 |
0.0317000 |
0.0000000 |
0.0010000 |
0.0067891 |
37.0 |
41.83 |
21 |
154.94 |
19.05 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
143209652 |
rs200157937 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.8 |
22 |
110.17 |
81.82 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
143209688 |
. |
ATT |
ACC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
41.56 |
43 |
139.56 |
44.52 |
16.28 |
1 |
20.93 |
0/1 |
| chr1 |
143209689 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
41.56 |
34 |
229.11 |
46.41 |
26.47 |
1 |
26.47 |
0/1 |
| chr1 |
143209692 |
rs200938158 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
53.29 |
42 |
702.14 |
23.81 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
143209711 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
40.57 |
54 |
93.24 |
36.51 |
12.96 |
0 |
12.96 |
0/1 |
| chr1 |
143209759 |
rs199989791 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.16 |
55.65 |
85 |
1000.00 |
1.20 |
50.59 |
0 |
50.59 |
0/1 |
| chr1 |
143209762 |
. |
T |
TA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
55.66 |
81 |
1000.00 |
1.20 |
50.62 |
0 |
50.62 |
0/1 |
| chr1 |
143209765 |
rs200955831 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.31 |
83 |
1000.00 |
6.59 |
59.04 |
0 |
59.04 |
0/1 |
| chr1 |
143209767 |
rs201941431 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.78 |
55.75 |
84 |
1000.00 |
6.71 |
65.48 |
0 |
65.48 |
0/1 |
| chr1 |
143209808 |
rs79604104 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.04 |
56.7 |
77 |
1000.00 |
4.31 |
64.94 |
0 |
64.94 |
0/1 |
| chr1 |
143209844 |
rs79704978 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
58.0 |
36 |
51.88 |
21.11 |
13.89 |
0 |
13.89 |
0/1 |
| chr1 |
143209849 |
rs76618926 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
62.25 |
32 |
682.61 |
12.50 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
143209851 |
rs75424011 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.45 |
29 |
180.53 |
4.93 |
24.14 |
0 |
37.93 |
0/1 |
| chr1 |
143209883 |
rs80096566 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.6 |
11 |
139.12 |
14.55 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
143209912 |
rs75258140 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.0 |
11 |
55.58 |
72.73 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
143209993 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.0 |
56.5 |
15 |
65.44 |
40.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
143210112 |
rs144111332 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.22 |
47 |
201.99 |
85.11 |
19.15 |
0 |
19.15 |
0/1 |
| chr1 |
143210174 |
rs78780536 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
58.25 |
47 |
478.24 |
64.89 |
34.04 |
0 |
34.04 |
0/1 |
| chr1 |
143210184 |
rs150660353 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.22 |
47 |
202.00 |
88.42 |
19.15 |
0 |
19.15 |
0/1 |
| chr1 |
143210193 |
. |
G |
GT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.31 |
50 |
428.02 |
58.67 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
143210293 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.37 |
37 |
983.96 |
9.21 |
72.97 |
0 |
72.97 |
0/1 |
| chr1 |
143210303 |
rs200470171 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
57.0 |
35 |
1000.00 |
7.29 |
82.86 |
0 |
82.86 |
0/1 |
| chr1 |
143210327 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.4 |
25 |
727.69 |
6.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
143210343 |
rs142396925 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.55 |
14 |
384.87 |
7.79 |
78.57 |
0 |
78.57 |
0/1 |
| chr1 |
143213156 |
rs146236530 |
T |
G |
. |
PASS |
0.0045000 |
0.0447000 |
0.0000000 |
0.0696000 |
0.0031000 |
0.0220000 |
35.67 |
67.11 |
23 |
258.08 |
2.90 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
143217375 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.5 |
28 |
50.33 |
0.00 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
143217425 |
rs371757210 |
TTAGA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
57.12 |
15 |
237.98 |
1.67 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
143223230 |
rs202198984 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.12 |
30 |
211.39 |
0.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
143223322 |
rs200234152 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
49.14 |
70 |
622.01 |
0.95 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
143223423 |
rs200205288 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.2 |
23 |
311.85 |
49.57 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
143226345 |
rs139354267 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.8 |
11 |
139.13 |
10.91 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
143230302 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.86 |
21 |
196.71 |
38.10 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
143230315 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
60.0 |
26 |
211.42 |
34.62 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
143230361 |
rs199651539 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.73 |
54.73 |
53 |
227.31 |
18.52 |
20.75 |
0 |
20.75 |
0/1 |
| chr1 |
143230377 |
rs200465879 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
54.73 |
58 |
252.44 |
19.44 |
18.97 |
0 |
18.97 |
0/1 |
| chr1 |
143230471 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.81 |
24 |
563.62 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
143243916 |
rs4061254 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.73 |
31 |
329.55 |
38.71 |
35.48 |
0 |
35.48 |
0/1 |
| chr1 |
143243998 |
rs189254144 |
A |
G |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0119000 |
0.0010000 |
0.0027955 |
36.45 |
69.0 |
88 |
1000.00 |
4.55 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
143244014 |
rs35885859 |
A |
T |
. |
PASS |
0.3041000 |
0.3991000 |
0.6290000 |
0.3141000 |
0.5337000 |
0.4295000 |
37.0 |
69.75 |
104 |
318.69 |
21.15 |
15.38 |
0 |
15.38 |
0/1 |
| chr1 |
143244067 |
rs202176415 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.85 |
87 |
244.55 |
67.37 |
14.94 |
0 |
14.94 |
0/1 |
| chr1 |
143344320 |
rs77936640 |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.56 |
10 |
265.11 |
20.00 |
80.00 |
0 |
90.00 |
0/1 |
| chr1 |
143344375 |
rs9970967 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.09 |
36 |
318.64 |
38.89 |
30.56 |
0 |
30.56 |
0/1 |
| chr1 |
143344377 |
rs75302130 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
50.64 |
38 |
748.08 |
21.53 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
143344382 |
. |
CGA |
CAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
55.33 |
43 |
172.30 |
3.49 |
18.60 |
0 |
100.00 |
0/1 |
| chr1 |
143344382 |
. |
CGA |
CGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
55.33 |
43 |
172.30 |
0.80 |
81.40 |
0 |
100.00 |
0/1 |
| chr1 |
143344413 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.42 |
96 |
472.21 |
13.49 |
19.79 |
0 |
19.79 |
0/1 |
| chr1 |
143344513 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
51.88 |
72 |
68.82 |
8.33 |
11.11 |
0 |
11.11 |
0/1 |
| chr1 |
143344521 |
rs199835576 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
54.89 |
65 |
135.81 |
33.16 |
13.85 |
0 |
13.85 |
0/1 |
| chr1 |
143344569 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
15 |
89.46 |
0.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
143378355 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
33.4 |
30 |
74.08 |
26.67 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
143378397 |
rs199683859 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
36.2 |
23 |
103.00 |
0.00 |
21.74 |
0 |
21.74 |
0/1 |
| chr1 |
143378404 |
rs140846070 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
36.2 |
23 |
91.00 |
0.00 |
21.74 |
0 |
21.74 |
0/1 |
| chr1 |
143378409 |
rs147226760 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
36.2 |
21 |
97.02 |
0.00 |
23.81 |
0 |
23.81 |
0/1 |
| chr1 |
143378853 |
rs200183428 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.5 |
13 |
95.48 |
7.69 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
143392653 |
. |
CTAAG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
36.8 |
14 |
106.64 |
5.71 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
143392661 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
36.8 |
18 |
110.20 |
2.22 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
143401926 |
rs1818231 |
C |
G |
. |
PASS |
0.9826000 |
0.6470000 |
0.7004000 |
0.6809000 |
0.7515000 |
0.7736000 |
36.2 |
59.6 |
15 |
574.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
143501829 |
rs115798048 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
29.42 |
70 |
1000.00 |
1.59 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
143501950 |
rs61800235 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.59 |
44 |
541.04 |
16.84 |
38.64 |
0 |
38.64 |
0/1 |
| chr1 |
143501961 |
rs61800236 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
51.64 |
35 |
422.96 |
31.43 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
143744160 |
rs61823125 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
62.42 |
88 |
1000.00 |
15.91 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
143744411 |
rs140521978 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
64.67 |
16 |
153.84 |
20.83 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
143744418 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.25 |
14 |
92.48 |
14.29 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
143767513 |
rs6604511 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.41 |
60.29 |
181 |
1000.00 |
14.31 |
22.65 |
0 |
22.65 |
0/1 |
| chr1 |
143767522 |
rs6604512 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
60.74 |
187 |
979.97 |
5.80 |
20.32 |
0 |
20.32 |
0/1 |
| chr1 |
143767547 |
rs2490183 |
G |
A |
. |
PASS |
0.4092000 |
0.3790000 |
0.3284000 |
0.3260000 |
0.4233000 |
0.3748000 |
37.0 |
57.26 |
180 |
386.45 |
5.46 |
12.78 |
0 |
12.78 |
0/1 |
| chr1 |
143914163 |
rs148754361 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.44 |
146 |
655.90 |
33.89 |
18.49 |
0 |
18.49 |
0/1 |
| chr1 |
143939008 |
rs376240827 |
CA |
C |
. |
PASS |
0.5189000 |
0.4741000 |
0.4484000 |
0.4573000 |
0.4550000 |
0.4736000 |
36.79 |
61.17 |
61 |
979.70 |
10.63 |
47.54 |
0 |
47.54 |
0/1 |
| chr1 |
144013853 |
rs6600697 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
70.0 |
161 |
1000.00 |
0.32 |
31.06 |
0 |
31.06 |
0/1 |
| chr1 |
144013865 |
rs6600696 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
70.0 |
181 |
1000.00 |
1.63 |
30.39 |
0 |
30.39 |
0/1 |
| chr1 |
144014051 |
rs1884147 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
69.9 |
619 |
1000.00 |
1.25 |
32.63 |
0 |
32.63 |
0/1 |
| chr1 |
144014068 |
rs1884146 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
69.95 |
547 |
1000.00 |
2.12 |
67.28 |
0 |
67.28 |
0/1 |
| chr1 |
144014234 |
rs6600695 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
27 |
387.51 |
0.00 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
144014253 |
rs6600694 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
19 |
490.98 |
0.00 |
73.68 |
0 |
73.68 |
0/1 |
| chr1 |
144044056 |
rs6600677 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
60.23 |
146 |
1000.00 |
0.13 |
29.45 |
0 |
29.45 |
0/1 |
| chr1 |
144044114 |
rs6600676 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.38 |
128 |
1000.00 |
0.00 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
144051161 |
rs77196483 |
AT |
A |
. |
PASS |
0.4947000 |
0.4928000 |
0.4613000 |
0.4771000 |
0.4959000 |
0.4844000 |
36.74 |
66.82 |
128 |
1000.00 |
7.81 |
39.06 |
0 |
39.06 |
0/1 |
| chr1 |
144148910 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
59.89 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144148918 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.89 |
35 |
238.12 |
0.00 |
25.71 |
0 |
25.71 |
0/1 |
| chr1 |
144148923 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.0 |
31 |
208.39 |
6.45 |
25.81 |
0 |
25.81 |
0/1 |
| chr1 |
144148928 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.0 |
27 |
216.27 |
7.41 |
29.63 |
0 |
29.63 |
0/1 |
| chr1 |
144148945 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144364195 |
rs200241118 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
47.5 |
12 |
253.56 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
144510033 |
rs200517264 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
36.88 |
28 |
593.35 |
1.26 |
60.71 |
0 |
60.71 |
0/1 |
| chr1 |
144519860 |
rs200486718 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.6 |
10 |
146.28 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
144520905 |
rs3124577 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
47.72 |
18 |
700.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144585447 |
rs201160182 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.0 |
15 |
85.31 |
0.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
144585462 |
rs150469221 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
56.2 |
17 |
322.06 |
0.00 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
144585597 |
rs142356090 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.72 |
68.84 |
224 |
1000.00 |
1.31 |
33.48 |
0 |
33.48 |
0/1 |
| chr1 |
144585620 |
rs76658098 |
G |
A |
. |
PASS |
0.5008000 |
0.4942000 |
0.4881000 |
0.5000000 |
0.5000000 |
0.4970000 |
36.31 |
57.04 |
260 |
1000.00 |
0.44 |
26.92 |
0 |
26.92 |
0/1 |
| chr1 |
144585692 |
rs201956196 |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
68.67 |
144 |
1000.00 |
11.81 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
144585723 |
. |
TTA |
TGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
61.08 |
109 |
766.52 |
17.87 |
24.77 |
0 |
66.97 |
0/1 |
| chr1 |
144585723 |
. |
TTA |
TTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
61.08 |
109 |
766.52 |
4.19 |
42.20 |
0 |
66.97 |
0/1 |
| chr1 |
144598589 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
28 |
50.33 |
28.57 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
144598641 |
rs1698687 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.33 |
92 |
818.42 |
21.18 |
29.35 |
0 |
29.35 |
0/1 |
| chr1 |
144598659 |
rs139801602 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
64.82 |
123 |
1000.00 |
6.85 |
30.89 |
0 |
30.89 |
0/1 |
| chr1 |
144598691 |
rs149760427 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.88 |
65.24 |
149 |
193.14 |
7.90 |
11.41 |
0 |
11.41 |
0/1 |
| chr1 |
144598755 |
rs2660554 |
G |
A |
. |
PASS |
0.5000000 |
0.4986000 |
0.4940000 |
0.4930000 |
0.5000000 |
0.4972000 |
35.0 |
66.21 |
95 |
636.04 |
17.46 |
25.26 |
0 |
25.26 |
0/1 |
| chr1 |
144606628 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
44.75 |
17 |
71.43 |
23.53 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
144615138 |
rs9441132 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.0 |
21 |
276.11 |
34.92 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
144615246 |
rs200815869 |
A |
AAG |
. |
PASS |
0.0703000 |
0.2709000 |
0.4583000 |
0.2247000 |
0.3231000 |
0.2566000 |
34.55 |
56.73 |
40 |
527.39 |
16.11 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
144615250 |
rs202042060 |
G |
GAA |
. |
PASS |
0.0076000 |
0.1009000 |
0.2589000 |
0.0606000 |
0.0971000 |
0.0992000 |
35.91 |
59.64 |
38 |
690.74 |
9.02 |
55.26 |
0 |
55.26 |
0/1 |
| chr1 |
144617119 |
rs12057892 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.17 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144617251 |
rs12057989 |
A |
G |
. |
PASS |
0.1263000 |
0.3429000 |
0.6766000 |
0.1948000 |
0.2515000 |
0.3053000 |
37.0 |
63.52 |
56 |
1000.00 |
27.46 |
51.79 |
0 |
51.79 |
0/1 |
| chr1 |
144617262 |
rs4067689 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
36.67 |
50 |
63.52 |
41.33 |
12.00 |
0 |
12.00 |
0/1 |
| chr1 |
144617268 |
rs79609511 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.33 |
37.33 |
52 |
120.02 |
15.38 |
15.38 |
0 |
17.31 |
0/1 |
| chr1 |
144617352 |
. |
A |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
68.8 |
17 |
121.07 |
23.53 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
144618070 |
rs55646423 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
57.2 |
81 |
535.12 |
19.01 |
24.69 |
0 |
24.69 |
0/1 |
| chr1 |
144618144 |
rs61809736 |
A |
G |
. |
PASS |
0.7496000 |
0.8790000 |
0.8512000 |
0.9076000 |
0.7699000 |
0.8237000 |
36.77 |
51.68 |
104 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144618165 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.22 |
74 |
120.73 |
0.30 |
12.16 |
0 |
12.16 |
0/1 |
| chr1 |
144618201 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.67 |
34 |
366.44 |
20.59 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
144619272 |
rs112591404 |
T |
C |
. |
PASS |
0.0098000 |
0.2334000 |
0.4633000 |
0.1809000 |
0.1902000 |
0.2017000 |
37.0 |
58.2 |
12 |
140.26 |
16.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
144619318 |
. |
G |
A |
. |
PASS |
0.5174000 |
0.7435000 |
0.9603000 |
0.5726000 |
0.8129000 |
0.7067000 |
35.67 |
65.17 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144619346 |
rs4649563 |
G |
A |
. |
PASS |
0.2436000 |
0.6196000 |
0.7986000 |
0.5288000 |
0.7362000 |
0.5609000 |
37.0 |
66.78 |
65 |
1000.00 |
0.97 |
83.08 |
0 |
83.08 |
0/1 |
| chr1 |
144619354 |
rs4067644 |
C |
T |
. |
PASS |
0.1634000 |
0.3156000 |
0.5903000 |
0.1909000 |
0.2393000 |
0.2907000 |
36.52 |
64.92 |
83 |
749.95 |
9.93 |
30.12 |
0 |
30.12 |
0/1 |
| chr1 |
144619389 |
rs200114680 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.54 |
107 |
184.34 |
0.72 |
12.15 |
0 |
12.15 |
0/1 |
| chr1 |
144619401 |
rs61676308 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.61 |
118 |
170.42 |
4.30 |
11.02 |
0 |
15.25 |
0/1 |
| chr1 |
144619466 |
rs182009663 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
51.33 |
85 |
200.93 |
43.92 |
14.12 |
0 |
14.12 |
0/1 |
| chr1 |
144619483 |
rs4067648 |
A |
C |
. |
PASS |
0.4675000 |
0.6744000 |
0.8343000 |
0.5875000 |
0.7853000 |
0.6561000 |
36.49 |
64.24 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144619505 |
rs4067649 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.53 |
54 |
431.54 |
11.11 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
144620091 |
rs151155946 |
C |
T |
. |
PASS |
0.0666000 |
0.3256000 |
0.2411000 |
0.3469000 |
0.4990000 |
0.2784000 |
36.37 |
38.32 |
42 |
622.75 |
4.26 |
45.24 |
0 |
45.24 |
0/1 |
| chr1 |
144621526 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
43.82 |
122 |
59.80 |
12.22 |
9.02 |
0 |
9.02 |
0/1 |
| chr1 |
144621555 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
54.77 |
149 |
801.92 |
6.58 |
20.81 |
0 |
20.81 |
0/1 |
| chr1 |
144621667 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.07 |
60 |
371.71 |
13.81 |
23.33 |
0 |
23.33 |
0/1 |
| chr1 |
144621681 |
rs199953515 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.0 |
48 |
115.45 |
35.71 |
14.58 |
0 |
14.58 |
0/1 |
| chr1 |
144621694 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.67 |
35 |
112.80 |
32.38 |
17.14 |
0 |
17.14 |
0/1 |
| chr1 |
144621696 |
. |
ATA |
AGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.67 |
35 |
72.91 |
45.71 |
14.29 |
0 |
17.14 |
0/1 |
| chr1 |
144811776 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
49.4 |
21 |
101.16 |
1.90 |
23.81 |
0 |
23.81 |
0/1 |
| chr1 |
144811836 |
rs320820 |
G |
A |
. |
PASS |
0.9402000 |
0.9150000 |
0.9940000 |
0.8449000 |
0.8487000 |
0.9105000 |
36.29 |
56.76 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144811842 |
rs7411539 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
53.42 |
24 |
380.39 |
25.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
144811912 |
rs3979893 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.71 |
80 |
599.76 |
32.86 |
26.25 |
0 |
26.25 |
0/1 |
| chr1 |
144811924 |
rs320821 |
T |
G |
. |
PASS |
1.0000000 |
0.9856000 |
1.0000000 |
0.9722000 |
0.9857000 |
0.9896000 |
36.72 |
61.15 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144811969 |
rs9725786 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
57.12 |
83 |
775.57 |
9.92 |
31.33 |
0 |
31.33 |
0/1 |
| chr1 |
144811998 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.72 |
43 |
547.05 |
5.47 |
39.53 |
0 |
41.86 |
0/1 |
| chr1 |
144812017 |
. |
GGA |
GAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.38 |
21 |
241.50 |
13.10 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
144812025 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
58.75 |
17 |
226.50 |
1.47 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
144813815 |
rs371436644 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
34.67 |
128 |
208.81 |
3.54 |
11.72 |
0 |
11.72 |
0/1 |
| chr1 |
144813909 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
31.17 |
31 |
112.84 |
18.28 |
19.35 |
0 |
19.35 |
0/1 |
| chr1 |
144816621 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.7 |
93 |
105.31 |
1.72 |
10.75 |
0 |
10.75 |
0/1 |
| chr1 |
144823303 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
40.33 |
29 |
114.71 |
39.08 |
20.69 |
0 |
20.69 |
0/1 |
| chr1 |
144823317 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
40.33 |
27 |
132.73 |
44.44 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
144828748 |
rs144947204 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0040000 |
0.0000000 |
0.0000000 |
0.0007987 |
36.67 |
48.75 |
239 |
739.87 |
16.25 |
15.06 |
0 |
15.06 |
0/1 |
| chr1 |
144828763 |
. |
GGA |
GTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.72 |
49.26 |
233 |
882.50 |
9.86 |
16.74 |
0 |
18.45 |
0/1 |
| chr1 |
144828784 |
rs78667364 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
48.57 |
180 |
1000.00 |
3.02 |
23.33 |
0 |
23.33 |
0/1 |
| chr1 |
144828910 |
rs12124435 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.2 |
17 |
121.07 |
11.76 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
144828923 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.0 |
12 |
56.72 |
50.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
144852203 |
rs74872612 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
54.4 |
16 |
112.06 |
12.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
144852234 |
. |
ATC |
ACG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.56 |
28 |
216.27 |
7.14 |
32.14 |
0 |
32.14 |
0/1 |
| chr1 |
144852249 |
rs1055317 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
56.09 |
32 |
318.68 |
6.82 |
34.38 |
0 |
34.38 |
0/1 |
| chr1 |
144852254 |
rs77608804 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.17 |
33 |
365.30 |
13.64 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
144852321 |
rs1055315 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.38 |
61.33 |
108 |
1000.00 |
2.99 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
144852390 |
rs61804988 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
64.89 |
233 |
1000.00 |
2.51 |
43.78 |
0 |
43.78 |
0/1 |
| chr1 |
144852476 |
rs1616066 |
T |
C |
. |
PASS |
0.5008000 |
0.5000000 |
0.5000000 |
0.5000000 |
0.5000000 |
0.5002000 |
36.42 |
65.06 |
139 |
1000.00 |
10.10 |
44.60 |
0 |
44.60 |
0/1 |
| chr1 |
144852545 |
rs1699760 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.16 |
42 |
634.75 |
2.26 |
45.24 |
0 |
45.24 |
0/1 |
| chr1 |
144853063 |
rs112258980 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
13 |
53.71 |
0.00 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
144853214 |
rs1698587 |
A |
G |
. |
PASS |
0.5113000 |
0.5101000 |
0.5030000 |
0.5080000 |
0.5072000 |
0.5080000 |
36.51 |
67.69 |
115 |
1000.00 |
0.57 |
42.61 |
0 |
42.61 |
0/1 |
| chr1 |
144854046 |
. |
CCCC |
CTGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
28 |
180.52 |
0.00 |
25.00 |
1 |
25.00 |
0/1 |
| chr1 |
144854047 |
. |
C |
T |
. |
PASS |
0.0053000 |
0.0072000 |
0.0040000 |
0.0040000 |
0.0051000 |
0.0049920 |
37.0 |
63.62 |
26 |
223.44 |
11.54 |
30.77 |
1 |
30.77 |
0/1 |
| chr1 |
144854049 |
. |
C |
G |
. |
PASS |
0.0053000 |
0.0072000 |
0.0040000 |
0.0040000 |
0.0051000 |
0.0049920 |
37.0 |
63.62 |
26 |
219.28 |
11.54 |
30.77 |
1 |
30.77 |
0/1 |
| chr1 |
144854052 |
rs1698584 |
G |
A |
. |
PASS |
0.5038000 |
0.5029000 |
0.5010000 |
0.5040000 |
0.5041000 |
0.5032000 |
37.0 |
67.05 |
30 |
712.64 |
3.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
144854083 |
rs1699758 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
69.12 |
75 |
1000.00 |
9.41 |
45.33 |
0 |
45.33 |
0/1 |
| chr1 |
144854087 |
rs4997150 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.9 |
77 |
571.17 |
6.88 |
25.97 |
0 |
25.97 |
0/1 |
| chr1 |
144854095 |
rs4997149 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
67.0 |
78 |
593.79 |
0.37 |
26.92 |
0 |
26.92 |
0/1 |
| chr1 |
144854180 |
rs4997148 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
68.31 |
172 |
1000.00 |
2.39 |
29.65 |
0 |
29.65 |
0/1 |
| chr1 |
144854245 |
rs4997147 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.63 |
68.2 |
107 |
1000.00 |
2.03 |
32.71 |
0 |
32.71 |
0/1 |
| chr1 |
144854277 |
rs1699757 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
68.67 |
67 |
1000.00 |
0.69 |
77.61 |
0 |
77.61 |
0/1 |
| chr1 |
144854351 |
rs599643 |
A |
C |
. |
PASS |
0.9531000 |
0.9222000 |
0.9514000 |
0.8549000 |
0.8988000 |
0.9181000 |
37.0 |
69.9 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144854380 |
rs2798857 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
16 |
128.22 |
47.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
144854397 |
rs833193 |
T |
C |
. |
PASS |
0.9009000 |
0.9308000 |
0.9504000 |
0.8628000 |
0.9018000 |
0.9075000 |
37.0 |
69.67 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144854412 |
rs77812232 |
A |
C |
. |
PASS |
0.5008000 |
0.5014000 |
0.5188000 |
0.5080000 |
0.5051000 |
0.5068000 |
37.0 |
69.62 |
25 |
222.30 |
7.00 |
32.00 |
0 |
32.00 |
0/1 |
| chr1 |
144854491 |
rs2798856 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.89 |
100 |
1000.00 |
4.22 |
36.00 |
0 |
36.00 |
0/1 |
| chr1 |
144854497 |
rs2653676 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.41 |
69.8 |
105 |
1000.00 |
2.93 |
39.05 |
0 |
39.05 |
0/1 |
| chr1 |
144854528 |
rs78461771 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
62.79 |
139 |
1000.00 |
13.36 |
28.06 |
0 |
28.06 |
0/1 |
| chr1 |
144854537 |
rs3851872 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
62.98 |
153 |
1000.00 |
9.80 |
27.45 |
0 |
27.45 |
0/1 |
| chr1 |
144854581 |
rs78371650 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
65.95 |
175 |
1000.00 |
8.79 |
22.29 |
0 |
22.29 |
0/1 |
| chr1 |
144854594 |
rs79028512 |
G |
T |
. |
PASS |
0.5408000 |
0.3804000 |
0.4464000 |
0.3191000 |
0.4693000 |
0.4411000 |
36.38 |
66.28 |
174 |
1000.00 |
7.60 |
22.41 |
0 |
22.41 |
0/1 |
| chr1 |
144854596 |
. |
GTC |
GCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
68.4 |
177 |
1000.00 |
2.59 |
23.16 |
0 |
55.37 |
0/1 |
| chr1 |
144854596 |
. |
GTC |
GCT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
68.4 |
177 |
1000.00 |
6.18 |
32.20 |
0 |
55.37 |
0/1 |
| chr1 |
144854608 |
rs2798855 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.86 |
161 |
63.59 |
21.74 |
8.70 |
0 |
8.70 |
0/1 |
| chr1 |
144854730 |
rs75855616 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
67.52 |
55 |
750.70 |
9.17 |
41.82 |
0 |
41.82 |
0/1 |
| chr1 |
144854750 |
rs75538208 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.11 |
67.21 |
46 |
586.68 |
6.64 |
41.30 |
0 |
41.30 |
0/1 |
| chr1 |
144854761 |
rs79445592 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
66.17 |
33 |
357.43 |
3.03 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
144854765 |
rs78741893 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
66.17 |
31 |
363.46 |
5.38 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
144854793 |
rs5004098 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
137.25 |
0.00 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
144854795 |
rs2861512 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.5 |
14 |
92.47 |
0.00 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
144854799 |
rs5004097 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
12 |
86.48 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
144855812 |
rs1699754 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.23 |
61.39 |
127 |
856.13 |
1.02 |
24.41 |
0 |
24.41 |
0/1 |
| chr1 |
144855866 |
rs1698582 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.27 |
84 |
633.65 |
14.50 |
26.19 |
0 |
26.19 |
0/1 |
| chr1 |
144855935 |
rs1698581 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.07 |
29 |
506.80 |
4.14 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
144856900 |
rs144438268 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.6 |
143 |
581.37 |
2.29 |
17.48 |
0 |
17.48 |
0/1 |
| chr1 |
144857068 |
rs905324 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
68.65 |
38 |
797.71 |
9.38 |
60.53 |
0 |
60.53 |
0/1 |
| chr1 |
144857876 |
rs1698578 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
12 |
177.88 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
144859720 |
rs678786 |
G |
C |
. |
PASS |
0.9939000 |
0.9078000 |
0.9960000 |
0.8290000 |
0.8640000 |
0.9239000 |
36.76 |
69.73 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144860026 |
rs1699819 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.5 |
33 |
615.92 |
11.11 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
144863208 |
rs1699813 |
A |
G |
. |
PASS |
0.5507000 |
0.5115000 |
0.5050000 |
0.5209000 |
0.5225000 |
0.5246000 |
37.0 |
63.53 |
41 |
554.21 |
1.15 |
41.46 |
0 |
41.46 |
0/1 |
| chr1 |
144863320 |
rs139822181 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
65.64 |
178 |
798.19 |
3.92 |
18.54 |
0 |
18.54 |
0/1 |
| chr1 |
144863505 |
rs642016 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
64.89 |
51 |
553.88 |
7.84 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
144864126 |
rs113961309 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
67.17 |
102 |
639.00 |
2.45 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
144864143 |
rs112629810 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.11 |
66.48 |
109 |
743.23 |
12.03 |
24.77 |
0 |
24.77 |
0/1 |
| chr1 |
144865850 |
rs1613780 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.02 |
201 |
1000.00 |
4.31 |
46.77 |
0 |
46.77 |
0/1 |
| chr1 |
144866509 |
rs924667 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
70.0 |
21 |
310.01 |
0.00 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
144866643 |
rs1620560 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
233 |
1000.00 |
1.08 |
47.21 |
0 |
47.21 |
0/1 |
| chr1 |
144866662 |
rs1064044 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.89 |
70.0 |
228 |
1000.00 |
2.63 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
144867841 |
rs143223294 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.83 |
20 |
157.95 |
10.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
144868170 |
rs1628310 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.46 |
77 |
1000.00 |
9.12 |
50.65 |
0 |
50.65 |
0/1 |
| chr1 |
144868204 |
rs1747951 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
48 |
779.63 |
5.80 |
47.92 |
0 |
47.92 |
0/1 |
| chr1 |
144871738 |
rs1698605 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.28 |
68.94 |
122 |
1000.00 |
0.61 |
54.92 |
0 |
54.92 |
0/1 |
| chr1 |
144871755 |
rs1778159 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.34 |
69.26 |
131 |
1000.00 |
6.40 |
55.73 |
0 |
55.73 |
0/1 |
| chr1 |
144871782 |
rs1778158 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.81 |
69.27 |
139 |
1000.00 |
2.41 |
46.04 |
0 |
46.04 |
0/1 |
| chr1 |
144871829 |
rs111761861 |
C |
T |
. |
PASS |
0.0605000 |
0.0144000 |
0.0734000 |
0.0179000 |
0.0327000 |
0.0427000 |
37.0 |
69.57 |
143 |
706.71 |
6.29 |
19.58 |
0 |
19.58 |
0/1 |
| chr1 |
144871889 |
rs1698606 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
69.92 |
59 |
818.04 |
11.25 |
42.37 |
0 |
42.37 |
0/1 |
| chr1 |
144873794 |
rs1610833 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
70.0 |
56 |
622.37 |
4.29 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
144873811 |
rs147417095 |
A |
G |
. |
PASS |
0.0514000 |
0.0144000 |
0.0734000 |
0.0179000 |
0.0327000 |
0.0403000 |
36.45 |
70.0 |
82 |
627.67 |
2.88 |
26.83 |
0 |
26.83 |
0/1 |
| chr1 |
144873818 |
rs1610566 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
70.0 |
95 |
1000.00 |
11.23 |
37.89 |
0 |
37.89 |
0/1 |
| chr1 |
144873840 |
rs1627335 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.88 |
69.93 |
117 |
1000.00 |
3.94 |
36.75 |
0 |
36.75 |
0/1 |
| chr1 |
144873887 |
rs1699787 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.97 |
69.74 |
149 |
1000.00 |
3.36 |
38.93 |
0 |
38.93 |
0/1 |
| chr1 |
144874038 |
rs1419160 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.44 |
47 |
494.39 |
9.84 |
34.04 |
0 |
34.04 |
0/1 |
| chr1 |
144874070 |
rs1610565 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.25 |
18 |
80.43 |
55.56 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
144874088 |
rs1419158 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
69.2 |
15 |
115.07 |
40.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
144874641 |
rs1610771 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
69.5 |
42 |
397.73 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
144874760 |
rs1610774 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.46 |
69.18 |
129 |
1000.00 |
11.22 |
51.94 |
0 |
51.94 |
0/1 |
| chr1 |
144874815 |
rs1778155 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.15 |
69.07 |
126 |
1000.00 |
7.76 |
56.35 |
0 |
56.35 |
0/1 |
| chr1 |
144874950 |
rs1747957 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.25 |
24 |
730.70 |
10.00 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
144875979 |
rs71664005 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.8 |
53 |
430.41 |
6.54 |
28.30 |
0 |
28.30 |
0/1 |
| chr1 |
144877176 |
rs2762875 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
64.0 |
133 |
1000.00 |
0.33 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
144878928 |
rs2762876 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
91.33 |
0.00 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
144879090 |
rs1778120 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
69.68 |
151 |
909.23 |
1.40 |
22.52 |
0 |
22.52 |
0/1 |
| chr1 |
144879264 |
rs2798901 |
A |
G |
. |
PASS |
0.5378000 |
0.7248000 |
0.9296000 |
0.6451000 |
0.7730000 |
0.7101000 |
36.75 |
69.93 |
142 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144879375 |
rs1747958 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.84 |
73 |
1000.00 |
6.81 |
50.68 |
0 |
50.68 |
0/1 |
| chr1 |
144879485 |
rs113467089 |
G |
C |
. |
PASS |
0.0613000 |
0.0144000 |
0.0734000 |
0.0179000 |
0.0327000 |
0.0429000 |
37.0 |
69.97 |
132 |
777.40 |
2.61 |
21.97 |
0 |
21.97 |
0/1 |
| chr1 |
144880832 |
rs12568796 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
70.0 |
99 |
618.25 |
5.18 |
23.23 |
0 |
23.23 |
0/1 |
| chr1 |
144881389 |
rs1614163 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.23 |
70.0 |
52 |
1000.00 |
11.17 |
59.62 |
0 |
59.62 |
0/1 |
| chr1 |
144882581 |
rs1699836 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
69.37 |
104 |
1000.00 |
5.77 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
144882823 |
rs1698647 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
70.0 |
195 |
1000.00 |
5.85 |
39.49 |
0 |
39.49 |
0/1 |
| chr1 |
144886063 |
rs1625285 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
70.0 |
61 |
607.33 |
1.31 |
32.79 |
0 |
32.79 |
0/1 |
| chr1 |
144886092 |
rs1343472 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
98 |
1000.00 |
8.00 |
37.76 |
0 |
37.76 |
0/1 |
| chr1 |
144886197 |
rs1698624 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.63 |
70.0 |
141 |
1000.00 |
5.08 |
46.10 |
0 |
46.10 |
0/1 |
| chr1 |
144892089 |
rs1614098 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
68.64 |
56 |
689.75 |
20.13 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
144892149 |
rs1698709 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.78 |
103 |
994.15 |
13.05 |
31.07 |
0 |
31.07 |
0/1 |
| chr1 |
144906508 |
rs34169189 |
C |
T |
. |
PASS |
0.0227000 |
0.1974000 |
0.0268000 |
0.1342000 |
0.1411000 |
0.0933000 |
36.37 |
69.63 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144910082 |
rs638780 |
A |
G |
. |
PASS |
0.9221000 |
0.8963000 |
0.9435000 |
0.7903000 |
0.8548000 |
0.8832000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144912153 |
rs1628172 |
A |
G |
. |
PASS |
0.9236000 |
0.8934000 |
0.9395000 |
0.8022000 |
0.8497000 |
0.8838000 |
36.92 |
69.99 |
142 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144912233 |
rs1629011 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.44 |
111 |
1000.00 |
2.91 |
35.14 |
0 |
35.14 |
0/1 |
| chr1 |
144915412 |
rs1698684 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
70.0 |
56 |
1000.00 |
4.52 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
144915561 |
rs1778111 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.0 |
88 |
955.77 |
11.21 |
34.09 |
0 |
34.09 |
0/1 |
| chr1 |
144915623 |
rs66512216 |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.79 |
86 |
612.40 |
4.32 |
24.42 |
0 |
38.37 |
0/1 |
| chr1 |
144916486 |
rs1699798 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
70.0 |
19 |
311.88 |
9.47 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
144916493 |
rs1699799 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
24 |
438.31 |
4.49 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
144916748 |
rs1747930 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.71 |
70.0 |
52 |
636.01 |
2.56 |
40.38 |
0 |
40.38 |
0/1 |
| chr1 |
144917199 |
rs1699800 |
C |
T |
. |
PASS |
0.5008000 |
0.5014000 |
0.5010000 |
0.5030000 |
0.4990000 |
0.5010000 |
35.94 |
70.0 |
84 |
1000.00 |
13.03 |
40.48 |
0 |
40.48 |
0/1 |
| chr1 |
144917546 |
rs1698682 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.82 |
70.0 |
138 |
1000.00 |
1.00 |
47.10 |
0 |
47.10 |
0/1 |
| chr1 |
144917841 |
rs1698681 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
64.14 |
114 |
1000.00 |
2.79 |
44.74 |
0 |
44.74 |
0/1 |
| chr1 |
144918726 |
rs112929970 |
T |
C |
. |
PASS |
0.0620000 |
0.0144000 |
0.0734000 |
0.0179000 |
0.0368000 |
0.0439000 |
37.0 |
69.0 |
24 |
187.69 |
11.90 |
29.17 |
0 |
29.17 |
0/1 |
| chr1 |
144918957 |
rs1061308 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
68.87 |
110 |
1000.00 |
1.52 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
144921924 |
rs71664015 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
70.0 |
158 |
1000.00 |
6.17 |
24.68 |
0 |
24.68 |
0/1 |
| chr1 |
144922109 |
rs1343469 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
70.0 |
62 |
1000.00 |
2.58 |
64.52 |
0 |
64.52 |
0/1 |
| chr1 |
144922171 |
rs1343470 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
70.0 |
176 |
1000.00 |
2.46 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
144922583 |
rs1359300 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
69.52 |
104 |
1000.00 |
4.95 |
40.38 |
0 |
40.38 |
0/1 |
| chr1 |
144923728 |
rs369106087 |
GT |
G |
. |
PASS |
0.0113000 |
0.2205000 |
0.3988000 |
0.1799000 |
0.1810000 |
0.1853000 |
36.4 |
69.62 |
154 |
1000.00 |
5.86 |
33.12 |
0 |
33.77 |
0/1 |
| chr1 |
144923823 |
rs11268079,rs142552837,rs377615175 |
TAGGAAGAAACGGCA |
T |
. |
PASS |
0.9675000 |
0.8934000 |
0.9911000 |
0.8012000 |
0.8405000 |
0.9038000 |
36.39 |
70.0 |
62 |
1000.00 |
2.12 |
98.39 |
0 |
98.39 |
0/1 |
| chr1 |
144923916 |
rs112658326 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
70.0 |
16 |
116.21 |
12.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
144930571 |
rs2762866 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
70.0 |
66 |
922.29 |
0.00 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
144930596 |
rs2762867 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
70.0 |
77 |
1000.00 |
2.67 |
44.16 |
0 |
44.16 |
0/1 |
| chr1 |
144930940 |
rs2147326 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
69.29 |
58 |
938.50 |
18.47 |
48.28 |
0 |
48.28 |
0/1 |
| chr1 |
144931330 |
rs2762745 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
123 |
1000.00 |
2.64 |
43.09 |
0 |
43.09 |
0/1 |
| chr1 |
144931392 |
rs2798893 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
70.0 |
96 |
1000.00 |
8.57 |
36.46 |
0 |
36.46 |
0/1 |
| chr1 |
144931461 |
rs41315685 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
121 |
1000.00 |
9.83 |
29.75 |
0 |
29.75 |
0/1 |
| chr1 |
144946510 |
rs2488977 |
C |
T |
. |
PASS |
0.7360000 |
0.8660000 |
0.7440000 |
0.9602000 |
0.8609000 |
0.8251000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
144946768 |
rs2762733 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
70.0 |
26 |
336.73 |
8.39 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
144952078 |
rs71220421 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.88 |
14 |
255.40 |
0.00 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
144952207 |
rs3121544 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
58.42 |
185 |
1000.00 |
2.96 |
28.65 |
0 |
28.65 |
0/1 |
| chr1 |
144952220 |
rs139438772 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.22 |
58.13 |
175 |
1000.00 |
0.42 |
44.00 |
0 |
44.00 |
0/1 |
| chr1 |
144952255 |
rs148545794 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.6 |
145 |
153.50 |
30.34 |
10.34 |
0 |
10.34 |
0/1 |
| chr1 |
144994658 |
rs1664022 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
69.91 |
466 |
1000.00 |
0.84 |
47.85 |
0 |
48.28 |
0/1 |
| chr1 |
144994861 |
rs2442640 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
38 |
760.09 |
15.79 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
145016020 |
rs657162 |
T |
G |
. |
PASS |
0.8079000 |
0.9870000 |
0.9593000 |
0.9990000 |
0.9796000 |
0.9351000 |
35.85 |
70.0 |
157 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145016032 |
rs5777511,rs112952246 |
C |
CA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.96 |
70.0 |
141 |
1000.00 |
1.87 |
46.81 |
0 |
48.94 |
0/1 |
| chr1 |
145020936 |
rs1778693 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
104.51 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
145021024 |
rs1778692 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
54 |
51.47 |
14.81 |
11.11 |
0 |
11.11 |
0/1 |
| chr1 |
145021034 |
rs674066 |
C |
A |
. |
PASS |
0.2708000 |
0.3300000 |
0.1250000 |
0.3588000 |
0.2822000 |
0.2696000 |
37.0 |
70.0 |
68 |
51.09 |
30.25 |
10.29 |
0 |
10.29 |
0/1 |
| chr1 |
145021089 |
rs1613515 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
70.0 |
146 |
476.87 |
16.74 |
15.75 |
0 |
15.75 |
0/1 |
| chr1 |
145021150 |
rs11538401 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
70.0 |
169 |
699.96 |
18.66 |
17.75 |
0 |
17.75 |
0/1 |
| chr1 |
145021183 |
rs56185836 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
116 |
491.40 |
12.48 |
18.10 |
0 |
18.10 |
0/1 |
| chr1 |
145021265 |
rs673110 |
A |
G |
. |
PASS |
0.3026000 |
0.3401000 |
0.1270000 |
0.3608000 |
0.2894000 |
0.2815000 |
37.0 |
70.0 |
22 |
68.39 |
22.73 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
145024590 |
. |
T |
TAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
70.0 |
26 |
693.08 |
33.33 |
23.08 |
0 |
76.92 |
0/1 |
| chr1 |
145024590 |
. |
T |
TACAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.75 |
70.0 |
26 |
693.08 |
0.00 |
53.85 |
0 |
76.92 |
0/1 |
| chr1 |
145039562 |
rs1663878 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.51 |
70.0 |
218 |
1000.00 |
0.10 |
56.42 |
0 |
56.42 |
0/1 |
| chr1 |
145075519 |
rs2596337 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
28 |
171.49 |
0.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
145075683 |
rs2762779 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
70.0 |
311 |
1000.00 |
6.93 |
24.44 |
0 |
24.44 |
0/1 |
| chr1 |
145075854 |
rs1663853 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.75 |
70.0 |
359 |
1000.00 |
1.61 |
39.83 |
0 |
39.83 |
0/1 |
| chr1 |
145075923 |
rs6656135 |
C |
T |
. |
PASS |
0.3797000 |
0.4467000 |
0.3899000 |
0.4483000 |
0.4172000 |
0.4121000 |
36.13 |
70.0 |
120 |
1000.00 |
8.48 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
145103844 |
rs2590144 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
36 |
569.27 |
3.59 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
145103947 |
rs2794062 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.55 |
70.0 |
174 |
1000.00 |
0.00 |
45.98 |
0 |
45.98 |
0/1 |
| chr1 |
145109456 |
rs7553975 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
49 |
112.44 |
24.49 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
145109468 |
rs2442652 |
A |
G |
. |
PASS |
0.8888000 |
0.9712000 |
0.9871000 |
0.9533000 |
0.9601000 |
0.9469000 |
36.59 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145109549 |
rs2596331 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.18 |
70.0 |
174 |
1000.00 |
1.04 |
25.29 |
0 |
25.29 |
0/1 |
| chr1 |
145109583 |
rs2794053 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.46 |
70.0 |
243 |
1000.00 |
0.13 |
46.09 |
0 |
46.09 |
0/1 |
| chr1 |
145109661 |
rs2655551 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
70.0 |
263 |
1000.00 |
2.10 |
20.53 |
0 |
20.53 |
0/1 |
| chr1 |
145109809 |
rs2596327 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
23 |
61.26 |
0.00 |
17.39 |
0 |
17.39 |
0/1 |
| chr1 |
145112287 |
rs2794042 |
T |
C |
. |
PASS |
0.5053000 |
0.5029000 |
0.5020000 |
0.5070000 |
0.5102000 |
0.5056000 |
37.0 |
70.0 |
12 |
223.80 |
0.00 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
145112313 |
rs2596302 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
26 |
348.75 |
5.59 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
145112414 |
rs2590131 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.63 |
69.69 |
205 |
1000.00 |
3.53 |
31.71 |
0 |
31.71 |
0/1 |
| chr1 |
145112420 |
rs2794041 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
70.0 |
215 |
895.68 |
9.16 |
17.67 |
0 |
17.67 |
0/1 |
| chr1 |
145112428 |
rs2794040 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
69.73 |
232 |
1000.00 |
5.40 |
32.33 |
0 |
32.33 |
0/1 |
| chr1 |
145112468 |
rs200742331 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
70.0 |
286 |
665.85 |
2.10 |
13.29 |
0 |
13.29 |
0/1 |
| chr1 |
145112485 |
rs2794039 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
69.71 |
269 |
1000.00 |
6.13 |
25.65 |
0 |
25.65 |
0/1 |
| chr1 |
145115602 |
rs7540746 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
53.71 |
0.00 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
145115810 |
rs2655557 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
69.91 |
369 |
1000.00 |
0.65 |
62.06 |
0 |
62.06 |
0/1 |
| chr1 |
145115815 |
rs202212505 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.73 |
70.0 |
360 |
747.46 |
1.67 |
12.50 |
0 |
12.50 |
0/1 |
| chr1 |
145115820 |
rs2655558 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
70.0 |
365 |
1000.00 |
3.14 |
24.66 |
0 |
24.66 |
0/1 |
| chr1 |
145116027 |
rs7550440 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
98.49 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
145139088 |
rs150935736 |
C |
CG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.04 |
68.82 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145139601 |
rs3831335 |
T |
TCCGGCCGCCGCCGTGGGGGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
66.04 |
28 |
1000.00 |
0.00 |
92.86 |
0 |
96.43 |
1/1 |
| chr1 |
145209350 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.64 |
64 |
230.23 |
3.98 |
17.19 |
0 |
17.19 |
0/1 |
| chr1 |
145209366 |
rs856450 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
49.06 |
91 |
1000.00 |
15.81 |
39.56 |
0 |
39.56 |
0/1 |
| chr1 |
145209612 |
. |
GCCCCGCCAACCGCCGGGGTT |
G |
. |
PASS |
0.4100000 |
0.3674000 |
0.4256000 |
0.4225000 |
0.4724000 |
0.4219000 |
37.0 |
69.0 |
10 |
175.48 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
145214099 |
rs141567600 |
G |
A |
. |
PASS |
0.7769000 |
0.6945000 |
0.5933000 |
0.6133000 |
0.5961000 |
0.6603000 |
36.03 |
52.65 |
142 |
1000.00 |
0.41 |
78.17 |
0 |
78.17 |
0/1 |
| chr1 |
145214122 |
rs201409377 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
51.31 |
108 |
173.49 |
43.30 |
12.04 |
0 |
12.04 |
0/1 |
| chr1 |
145214205 |
rs139054716 |
TCTC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.73 |
56.73 |
28 |
314.16 |
4.55 |
39.29 |
1 |
39.29 |
0/1 |
| chr1 |
145214207 |
. |
TC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.73 |
56.73 |
24 |
320.18 |
12.88 |
45.83 |
1 |
45.83 |
0/1 |
| chr1 |
145248811 |
rs199902817 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.0 |
51 |
357.05 |
27.75 |
25.49 |
0 |
25.49 |
0/1 |
| chr1 |
145248851 |
rs201970415 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.33 |
46 |
79.69 |
39.13 |
13.04 |
0 |
13.04 |
0/1 |
| chr1 |
145250268 |
rs146483373 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
62.74 |
27 |
655.88 |
2.34 |
70.37 |
0 |
70.37 |
0/1 |
| chr1 |
145250312 |
rs200325064 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.73 |
116 |
244.94 |
3.68 |
12.93 |
0 |
12.93 |
0/1 |
| chr1 |
145250349 |
rs142553870 |
A |
AC |
. |
PASS |
0.4705000 |
0.5648000 |
0.5288000 |
0.5636000 |
0.5102000 |
0.5218000 |
36.45 |
59.21 |
175 |
1000.00 |
2.65 |
53.14 |
0 |
73.71 |
0/1 |
| chr1 |
145250466 |
rs140508814 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.55 |
23 |
353.62 |
26.09 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
145250471 |
rs148919613 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
64.08 |
21 |
389.41 |
14.29 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
145273302 |
rs201646101 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
66.08 |
459 |
1000.00 |
8.09 |
26.14 |
0 |
26.14 |
0/1 |
| chr1 |
145273345 |
rs75987820 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.46 |
67.78 |
602 |
1000.00 |
8.89 |
29.73 |
0 |
29.73 |
0/1 |
| chr1 |
145273473 |
rs202082259 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.88 |
65.25 |
376 |
1000.00 |
5.08 |
27.13 |
0 |
27.13 |
0/1 |
| chr1 |
145273520 |
rs2793994 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
65.4 |
134 |
805.29 |
5.67 |
22.39 |
0 |
22.39 |
0/1 |
| chr1 |
145281247 |
rs74721027 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.33 |
17 |
162.83 |
0.00 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
145281408 |
rs201164506 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
64.96 |
486 |
1000.00 |
1.83 |
24.49 |
0 |
24.49 |
0/1 |
| chr1 |
145281543 |
rs8002 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
67.11 |
424 |
1000.00 |
3.38 |
23.58 |
0 |
23.58 |
0/1 |
| chr1 |
145281613 |
rs12120756 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.96 |
67.24 |
518 |
1000.00 |
2.89 |
17.76 |
0 |
17.76 |
0/1 |
| chr1 |
145281633 |
rs28576333 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
67.05 |
554 |
1000.00 |
6.13 |
16.61 |
0 |
16.61 |
0/1 |
| chr1 |
145282093 |
rs199946317 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
65.35 |
68 |
586.25 |
12.35 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
145293425 |
rs7366490 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
66.67 |
299 |
1000.00 |
8.11 |
21.07 |
0 |
21.07 |
0/1 |
| chr1 |
145293490 |
rs6671335 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
68.12 |
374 |
1000.00 |
0.00 |
17.65 |
0 |
17.65 |
0/1 |
| chr1 |
145293498 |
rs4409714 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
68.48 |
358 |
1000.00 |
3.31 |
30.45 |
0 |
30.45 |
0/1 |
| chr1 |
145293510 |
rs4356110 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
67.23 |
351 |
1000.00 |
1.56 |
16.24 |
0 |
16.24 |
0/1 |
| chr1 |
145293515 |
rs12565078 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
69.33 |
341 |
534.19 |
12.38 |
11.44 |
0 |
11.44 |
0/1 |
| chr1 |
145293566 |
rs7526045 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
65.86 |
247 |
1000.00 |
9.86 |
17.81 |
0 |
17.81 |
0/1 |
| chr1 |
145293667 |
rs6689039 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.57 |
45 |
120.33 |
15.24 |
15.56 |
0 |
15.56 |
0/1 |
| chr1 |
145293692 |
rs7526143 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
64.22 |
39 |
214.08 |
5.13 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
145293744 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.25 |
22 |
68.39 |
9.09 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
145295539 |
rs3872115 |
A |
G |
. |
PASS |
0.0144000 |
0.0764000 |
0.2292000 |
0.1074000 |
0.1043000 |
0.1024000 |
37.0 |
45.56 |
49 |
571.93 |
3.17 |
36.73 |
0 |
36.73 |
0/1 |
| chr1 |
145295541 |
rs145797639 |
A |
G |
. |
PASS |
0.0023000 |
0.0259000 |
0.0377000 |
0.0249000 |
0.0532000 |
0.0272000 |
35.5 |
45.0 |
49 |
64.68 |
14.29 |
12.24 |
0 |
16.33 |
0/1 |
| chr1 |
145296268 |
rs4996271 |
C |
T |
. |
PASS |
0.0673000 |
0.4323000 |
0.4107000 |
0.4702000 |
0.3998000 |
0.3329000 |
37.0 |
67.78 |
11 |
310.35 |
12.12 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
145296372 |
rs4068113 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.49 |
51.74 |
68 |
1000.00 |
4.07 |
69.12 |
0 |
69.12 |
0/1 |
| chr1 |
145296478 |
rs6663523 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
48.42 |
77 |
1000.00 |
17.24 |
46.75 |
0 |
46.75 |
0/1 |
| chr1 |
145296486 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
50.0 |
68 |
126.78 |
91.18 |
13.24 |
0 |
13.24 |
0/1 |
| chr1 |
145296668 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
61.7 |
31 |
275.78 |
0.00 |
32.26 |
0 |
32.26 |
0/1 |
| chr1 |
145296675 |
rs199792864 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.88 |
33 |
536.54 |
0.00 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
145296682 |
rs4068118 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.0 |
32 |
493.63 |
0.00 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
145296698 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.0 |
31 |
83.07 |
0.00 |
16.13 |
0 |
16.13 |
0/1 |
| chr1 |
145296701 |
rs199739656 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.22 |
26 |
265.20 |
0.00 |
34.62 |
0 |
34.62 |
0/1 |
| chr1 |
145297615 |
rs4068081 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
61.06 |
120 |
258.52 |
25.00 |
13.33 |
0 |
13.33 |
0/1 |
| chr1 |
145297731 |
rs4068084 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.32 |
149 |
563.30 |
38.01 |
16.78 |
0 |
16.78 |
0/1 |
| chr1 |
145297735 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.73 |
143 |
163.66 |
24.90 |
10.49 |
0 |
10.49 |
0/1 |
| chr1 |
145297752 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
62.69 |
123 |
124.17 |
9.38 |
10.57 |
0 |
10.57 |
0/1 |
| chr1 |
145297783 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
63.65 |
95 |
488.85 |
14.21 |
21.05 |
0 |
21.05 |
0/1 |
| chr1 |
145297788 |
rs55732260 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.22 |
94 |
645.31 |
0.93 |
24.47 |
0 |
24.47 |
0/1 |
| chr1 |
145297794 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
61.85 |
86 |
527.94 |
24.88 |
23.26 |
0 |
23.26 |
0/1 |
| chr1 |
145297817 |
rs4068088 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.54 |
63 |
1000.00 |
2.50 |
82.54 |
0 |
82.54 |
0/1 |
| chr1 |
145297890 |
rs4068089 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.47 |
23 |
691.94 |
8.70 |
82.61 |
0 |
82.61 |
0/1 |
| chr1 |
145298070 |
rs12068486 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.33 |
16 |
170.00 |
12.50 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
145298089 |
rs28605822 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.67 |
24 |
141.77 |
8.33 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
145298095 |
rs12127411 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
54.8 |
27 |
90.97 |
32.59 |
18.52 |
0 |
18.52 |
0/1 |
| chr1 |
145298186 |
rs28507779 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
45.29 |
125 |
452.31 |
6.93 |
16.80 |
0 |
16.80 |
0/1 |
| chr1 |
145298351 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
23.0 |
40 |
51.84 |
85.00 |
12.50 |
0 |
12.50 |
0/1 |
| chr1 |
145299636 |
rs200598598 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
37.5 |
24 |
229.45 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
145299758 |
. |
C |
T |
. |
PASS |
0.0068000 |
0.0591000 |
0.0020000 |
0.0527000 |
0.0920000 |
0.0389000 |
36.4 |
38.05 |
168 |
285.26 |
39.76 |
11.90 |
0 |
11.90 |
0/1 |
| chr1 |
145299792 |
rs61814628 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.12 |
258 |
277.00 |
3.88 |
10.08 |
0 |
10.08 |
0/1 |
| chr1 |
145299805 |
rs61814629 |
A |
C |
. |
PASS |
0.0015000 |
0.0231000 |
0.0635000 |
0.0487000 |
0.0491000 |
0.0357000 |
36.14 |
60.82 |
270 |
296.27 |
0.74 |
10.37 |
0 |
10.37 |
0/1 |
| chr1 |
145299809 |
rs61814630 |
G |
A |
. |
PASS |
0.0015000 |
0.0231000 |
0.0635000 |
0.0487000 |
0.0491000 |
0.0357000 |
36.57 |
60.82 |
270 |
312.41 |
8.62 |
10.37 |
0 |
10.37 |
0/1 |
| chr1 |
145299824 |
rs9424711 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
47.64 |
286 |
719.61 |
11.66 |
13.64 |
0 |
13.64 |
0/1 |
| chr1 |
145299906 |
rs199863138 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
61.48 |
176 |
1000.00 |
3.23 |
29.55 |
0 |
29.55 |
0/1 |
| chr1 |
145301604 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
57.5 |
11 |
89.49 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
145301651 |
rs202030598 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.69 |
34 |
408.20 |
5.88 |
38.24 |
0 |
38.24 |
0/1 |
| chr1 |
145301697 |
rs75611366 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
65.16 |
108 |
1000.00 |
10.44 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
145301793 |
rs75332562 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
60.87 |
124 |
877.19 |
11.29 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
145301802 |
rs6690575 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.71 |
112 |
795.85 |
14.29 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
145301831 |
rs201470840 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
64.15 |
64 |
848.92 |
5.77 |
40.62 |
0 |
40.62 |
0/1 |
| chr1 |
145301853 |
rs61814641 |
C |
G |
. |
PASS |
0.8714000 |
0.9265000 |
0.8145000 |
0.8857000 |
0.8712000 |
0.8704000 |
36.6 |
62.4 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145301887 |
rs6683593 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
54.4 |
12 |
128.26 |
10.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
145301907 |
rs6697832 |
A |
C |
. |
PASS |
0.4932000 |
0.4841000 |
0.4692000 |
0.4583000 |
0.4918000 |
0.4798000 |
37.0 |
61.33 |
13 |
97.35 |
19.23 |
30.77 |
0 |
46.15 |
0/1 |
| chr1 |
145302745 |
rs376449217 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
40.33 |
11 |
55.58 |
36.36 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
145303971 |
rs146037073 |
A |
G |
. |
PASS |
0.7156000 |
0.5994000 |
0.3800000 |
0.4821000 |
0.4233000 |
0.5280000 |
36.08 |
48.85 |
108 |
704.47 |
5.84 |
24.07 |
0 |
24.07 |
0/1 |
| chr1 |
145310197 |
rs7554921 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
36.88 |
16 |
241.53 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
145310932 |
rs142756325 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
53.44 |
11 |
294.19 |
0.00 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
145310983 |
rs116247129 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.18 |
13 |
383.72 |
0.00 |
84.62 |
0 |
84.62 |
0/1 |
| chr1 |
145311083 |
rs201091947 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
40.79 |
154 |
1000.00 |
0.97 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
145311110 |
rs141899955 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.88 |
38.22 |
194 |
680.09 |
21.71 |
16.49 |
0 |
16.49 |
0/1 |
| chr1 |
145367863 |
rs78014802 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
65.6 |
15 |
115.07 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
145368461 |
rs12128680 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.43 |
39 |
138.39 |
23.44 |
17.95 |
0 |
17.95 |
0/1 |
| chr1 |
145368473 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
57.4 |
53 |
418.40 |
19.12 |
28.30 |
0 |
28.30 |
0/1 |
| chr1 |
145368518 |
rs61813437 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
59.28 |
154 |
1000.00 |
6.56 |
25.97 |
0 |
25.97 |
0/1 |
| chr1 |
145368837 |
rs7414890 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.67 |
19 |
282.12 |
0.00 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
145474626 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
28.43 |
70.0 |
31 |
102.42 |
154.84 |
22.58 |
0 |
22.58 |
0/1 |
| chr1 |
145531980 |
rs4384171 |
T |
C |
. |
PASS |
0.9554000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9880000 |
34.82 |
70.0 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145532010 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.5 |
70.0 |
13 |
67.91 |
11.54 |
30.77 |
1 |
30.77 |
0/1 |
| chr1 |
145532010 |
. |
CTGTG |
CTGTGAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
16 |
58.88 |
87.50 |
6.25 |
1 |
31.25 |
0/1 |
| chr1 |
145532010 |
. |
CTGTG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.5 |
70.0 |
16 |
58.88 |
37.50 |
25.00 |
1 |
31.25 |
0/1 |
| chr1 |
145532011 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.5 |
70.0 |
16 |
58.88 |
37.50 |
25.00 |
1 |
25.00 |
0/1 |
| chr1 |
145532012 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.5 |
70.0 |
16 |
58.88 |
37.50 |
25.00 |
1 |
25.00 |
0/1 |
| chr1 |
145532013 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.5 |
70.0 |
16 |
58.88 |
37.50 |
25.00 |
1 |
25.00 |
0/1 |
| chr1 |
145532549 |
rs1328584 |
T |
C |
. |
PASS |
0.9554000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9880000 |
36.52 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145555653 |
rs6424379 |
C |
T |
. |
PASS |
0.3903000 |
0.4553000 |
0.3085000 |
0.5775000 |
0.3190000 |
0.4065000 |
35.82 |
70.0 |
142 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145558565 |
rs11801520 |
C |
G |
. |
PASS |
0.8094000 |
0.9798000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9469000 |
36.38 |
69.66 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145561116 |
rs11578772 |
G |
A |
. |
PASS |
0.0023000 |
0.0692000 |
0.0000000 |
0.1133000 |
0.0184000 |
0.0365000 |
36.43 |
70.0 |
58 |
658.12 |
7.39 |
36.21 |
0 |
36.21 |
0/1 |
| chr1 |
145562087 |
rs41315701 |
G |
A |
. |
PASS |
0.0129000 |
0.1110000 |
0.1319000 |
0.2117000 |
0.1830000 |
0.1236000 |
35.15 |
70.0 |
33 |
387.20 |
22.84 |
39.39 |
0 |
39.39 |
0/1 |
| chr1 |
145562293 |
rs11579366 |
G |
C |
. |
PASS |
0.0900000 |
0.4755000 |
0.2738000 |
0.6143000 |
0.3630000 |
0.3391000 |
36.48 |
70.0 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145585317 |
rs4128488 |
A |
G |
. |
PASS |
0.7065000 |
0.9813000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9199000 |
36.43 |
70.0 |
21 |
829.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145588536 |
rs9286836 |
C |
T |
. |
PASS |
0.6059000 |
0.6441000 |
0.8353000 |
0.6362000 |
0.7863000 |
0.6987000 |
37.0 |
70.0 |
64 |
819.16 |
0.87 |
39.06 |
0 |
39.06 |
0/1 |
| chr1 |
145589491 |
rs1887804 |
A |
T |
. |
PASS |
0.8169000 |
0.9827000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9493000 |
34.71 |
70.0 |
21 |
789.49 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145597116 |
rs9728311 |
C |
T |
. |
PASS |
0.8548000 |
0.9885000 |
1.0000000 |
0.9990000 |
0.9990000 |
0.9597000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145597417 |
rs9728345 |
C |
A |
. |
PASS |
0.0635000 |
0.3343000 |
0.1548000 |
0.3579000 |
0.1789000 |
0.2011000 |
37.0 |
70.0 |
14 |
213.64 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
145598459 |
rs9729715 |
T |
C |
. |
PASS |
0.8548000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9601000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
145601861 |
rs9286837 |
G |
A |
. |
PASS |
0.8880000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9689000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146013577 |
rs145151412 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.02 |
64.82 |
89 |
1000.00 |
6.24 |
55.06 |
0 |
55.06 |
0/1 |
| chr1 |
146021102 |
rs55712445 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.14 |
12 |
223.80 |
4.76 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
146055315 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.2 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146055320 |
. |
G |
GC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.4 |
17 |
67.86 |
11.76 |
23.53 |
1 |
23.53 |
0/1 |
| chr1 |
146055320 |
. |
GT |
GCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
19 |
67.86 |
21.05 |
21.05 |
1 |
100.00 |
0/1 |
| chr1 |
146055321 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.82 |
17 |
632.84 |
0.74 |
94.12 |
1 |
100.00 |
1/1 |
| chr1 |
146055329 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.54 |
31 |
960.25 |
1.49 |
83.87 |
0 |
83.87 |
0/1 |
| chr1 |
146055527 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
48.0 |
21 |
55.24 |
0.00 |
19.05 |
0 |
19.05 |
0/1 |
| chr1 |
146057328 |
rs201313444 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.43 |
42 |
133.50 |
14.29 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
146215022 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
37.11 |
10 |
313.51 |
0.00 |
90.00 |
0 |
90.00 |
0/1 |
| chr1 |
146215111 |
rs373124782 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
54.57 |
80 |
1000.00 |
3.33 |
93.75 |
0 |
93.75 |
1/1 |
| chr1 |
146215113 |
rs377681920 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
54.64 |
82 |
1000.00 |
3.42 |
93.90 |
0 |
93.90 |
1/1 |
| chr1 |
146215138 |
rs370516541 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.28 |
55.17 |
87 |
1000.00 |
3.73 |
94.25 |
0 |
95.40 |
1/1 |
| chr1 |
146215223 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.23 |
32 |
953.09 |
10.10 |
81.25 |
0 |
81.25 |
0/1 |
| chr1 |
146215232 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.62 |
17 |
587.82 |
2.94 |
94.12 |
0 |
94.12 |
1/1 |
| chr1 |
146250779 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.75 |
16 |
86.45 |
12.50 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
146250806 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.44 |
30 |
249.01 |
37.78 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
146250855 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.29 |
58 |
670.14 |
18.56 |
36.21 |
0 |
36.21 |
0/1 |
| chr1 |
146250905 |
. |
G |
C |
. |
PASS |
0.0855000 |
0.0245000 |
0.0208000 |
0.0457000 |
0.0256000 |
0.0443000 |
35.29 |
44.07 |
68 |
319.48 |
5.88 |
20.59 |
0 |
20.59 |
0/1 |
| chr1 |
146250971 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
28.25 |
28 |
50.33 |
42.86 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
146317771 |
rs376457100 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
57.82 |
44 |
1000.00 |
0.00 |
81.82 |
0 |
86.36 |
0/1 |
| chr1 |
146334172 |
rs377555855 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
66.51 |
86 |
1000.00 |
4.65 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
146378783 |
rs371746531 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.18 |
22 |
360.79 |
9.09 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
146395247 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.0 |
11 |
55.58 |
78.79 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
146395313 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
48.22 |
34 |
605.05 |
24.84 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
146395315 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.15 |
35 |
405.20 |
10.11 |
37.14 |
0 |
37.14 |
0/1 |
| chr1 |
146395336 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.4 |
44.1 |
41 |
225.81 |
13.66 |
24.39 |
0 |
24.39 |
0/1 |
| chr1 |
146395423 |
rs369976705 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
42.29 |
63 |
350.68 |
31.75 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
146395447 |
. |
A |
G |
. |
PASS |
0.2874000 |
0.2089000 |
0.1419000 |
0.1590000 |
0.3436000 |
0.2324000 |
35.8 |
44.85 |
92 |
1000.00 |
2.83 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
146395465 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
47.65 |
100 |
1000.00 |
15.73 |
37.00 |
0 |
37.00 |
0/1 |
| chr1 |
146395537 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
44.58 |
80 |
705.20 |
31.67 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
146398203 |
rs376385375 |
A |
G |
. |
PASS |
0.4985000 |
0.4957000 |
0.4921000 |
0.4970000 |
0.5000000 |
0.4968000 |
37.0 |
44.5 |
23 |
399.54 |
0.00 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
146398208 |
rs371150699 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
43.79 |
28 |
456.03 |
7.14 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
146398387 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
38.5 |
49 |
388.67 |
48.98 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
146398399 |
rs377655940 |
G |
A |
. |
PASS |
0.0582000 |
0.1297000 |
0.1925000 |
0.0795000 |
0.0327000 |
0.0944000 |
37.0 |
45.62 |
45 |
500.41 |
28.89 |
35.56 |
0 |
35.56 |
0/1 |
| chr1 |
146398422 |
rs371127857 |
G |
A |
. |
PASS |
0.0053000 |
0.0014000 |
0.0000000 |
0.0000000 |
0.0112000 |
0.0037939 |
37.0 |
49.88 |
49 |
154.21 |
85.71 |
16.33 |
0 |
16.33 |
0/1 |
| chr1 |
146398425 |
. |
C |
A |
. |
PASS |
0.0045000 |
0.0014000 |
0.0000000 |
0.0000000 |
0.0082000 |
0.0029952 |
37.0 |
53.29 |
49 |
108.28 |
81.63 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
146399525 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
52.69 |
37 |
383.02 |
44.07 |
35.14 |
0 |
35.14 |
0/1 |
| chr1 |
146399562 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.81 |
93 |
815.41 |
45.40 |
29.03 |
0 |
29.03 |
0/1 |
| chr1 |
146399674 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.32 |
97 |
469.21 |
44.28 |
19.59 |
0 |
19.59 |
0/1 |
| chr1 |
146399683 |
rs372007274 |
A |
G |
. |
PASS |
0.3578000 |
0.3934000 |
0.3095000 |
0.2296000 |
0.1380000 |
0.2843000 |
36.75 |
55.35 |
76 |
1000.00 |
2.19 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
146399724 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
57.35 |
53 |
506.10 |
9.77 |
32.08 |
0 |
32.08 |
0/1 |
| chr1 |
146399728 |
. |
T |
C |
. |
PASS |
0.2224000 |
0.2968000 |
0.1558000 |
0.1849000 |
0.2474000 |
0.2167000 |
36.5 |
57.92 |
49 |
810.52 |
3.23 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
146399730 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.33 |
45 |
78.56 |
51.11 |
13.33 |
0 |
13.33 |
0/1 |
| chr1 |
146399778 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
57.64 |
27 |
459.04 |
0.00 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
146399787 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.64 |
27 |
471.05 |
0.00 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
146404683 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
46.22 |
19 |
658.69 |
5.26 |
94.74 |
0 |
94.74 |
1/1 |
| chr1 |
146404718 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.5 |
12 |
349.11 |
33.33 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
146409969 |
. |
A |
C |
. |
PASS |
0.1369000 |
0.1974000 |
0.0000000 |
0.3539000 |
0.0900000 |
0.1522000 |
35.8 |
54.2 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146414187 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
26.4 |
15 |
340.08 |
6.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
146466030 |
rs201303733 |
C |
G |
. |
PASS |
0.0946000 |
0.1484000 |
0.0962000 |
0.0427000 |
0.0194000 |
0.0773000 |
37.0 |
43.71 |
58 |
81.21 |
47.29 |
12.07 |
0 |
12.07 |
0/1 |
| chr1 |
146466129 |
rs202035412 |
T |
G |
. |
PASS |
0.1452000 |
0.2248000 |
0.2460000 |
0.1252000 |
0.0644000 |
0.1567000 |
37.0 |
38.11 |
75 |
489.49 |
15.11 |
24.00 |
0 |
24.00 |
0/1 |
| chr1 |
146466146 |
. |
G |
T |
. |
PASS |
0.1407000 |
0.1816000 |
0.0000000 |
0.3429000 |
0.0849000 |
0.1478000 |
35.36 |
63.5 |
71 |
1000.00 |
10.05 |
61.97 |
0 |
61.97 |
0/1 |
| chr1 |
146466176 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.56 |
40 |
218.92 |
46.11 |
22.50 |
0 |
22.50 |
0/1 |
| chr1 |
146491095 |
rs11240073 |
A |
G |
. |
PASS |
0.7209000 |
0.8343000 |
0.9663000 |
0.8280000 |
0.6442000 |
0.7925000 |
37.0 |
58.91 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146491156 |
rs74481866 |
A |
C |
. |
PASS |
0.1407000 |
0.1110000 |
0.0417000 |
0.2416000 |
0.0583000 |
0.1208000 |
37.0 |
42.0 |
25 |
96.98 |
24.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
146491920 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.15 |
37 |
395.02 |
7.48 |
35.14 |
0 |
35.14 |
0/1 |
| chr1 |
146491925 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.15 |
37 |
399.18 |
2.08 |
35.14 |
0 |
35.14 |
0/1 |
| chr1 |
146491928 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.15 |
68.15 |
44 |
349.94 |
6.64 |
29.55 |
0 |
29.55 |
0/1 |
| chr1 |
146491943 |
rs202087241 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
68.21 |
51 |
386.80 |
13.45 |
27.45 |
0 |
27.45 |
0/1 |
| chr1 |
146491946 |
rs200592894 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
68.31 |
55 |
454.15 |
5.00 |
29.09 |
0 |
29.09 |
0/1 |
| chr1 |
146491965 |
rs112324403 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.59 |
68.35 |
61 |
465.85 |
2.89 |
27.87 |
0 |
27.87 |
0/1 |
| chr1 |
146492064 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.6 |
38 |
62.00 |
28.42 |
13.16 |
0 |
13.16 |
0/1 |
| chr1 |
146492069 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.6 |
32 |
75.92 |
28.75 |
15.62 |
0 |
15.62 |
0/1 |
| chr1 |
146494509 |
rs34958799 |
GTG |
GCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.82 |
58.44 |
61 |
1000.00 |
11.38 |
55.74 |
0 |
57.38 |
0/1 |
| chr1 |
146495752 |
rs6663770 |
C |
T |
. |
PASS |
0.3548000 |
0.1427000 |
0.0476000 |
0.2863000 |
0.0757000 |
0.1953000 |
36.14 |
65.43 |
42 |
413.89 |
19.05 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
146502615 |
rs4950332 |
T |
G |
. |
PASS |
0.4130000 |
0.2709000 |
0.1667000 |
0.4404000 |
0.2515000 |
0.3177000 |
37.0 |
70.0 |
15 |
85.31 |
6.67 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
146514576 |
rs34026136 |
T |
C |
. |
PASS |
0.0628000 |
0.1412000 |
0.0268000 |
0.2763000 |
0.0798000 |
0.1126000 |
37.0 |
68.41 |
55 |
929.79 |
5.52 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
146523303 |
rs12723253 |
C |
T |
. |
PASS |
0.1218000 |
0.1369000 |
0.0268000 |
0.2604000 |
0.0808000 |
0.1246000 |
37.0 |
70.0 |
47 |
1000.00 |
3.96 |
61.70 |
0 |
61.70 |
0/1 |
| chr1 |
146523897 |
rs12124149 |
G |
T |
. |
PASS |
0.0832000 |
0.1354000 |
0.0268000 |
0.2604000 |
0.0828000 |
0.1146000 |
36.16 |
69.98 |
85 |
1000.00 |
3.12 |
50.59 |
0 |
50.59 |
0/1 |
| chr1 |
146549865 |
rs12753485 |
G |
C |
. |
PASS |
0.5590000 |
0.4971000 |
0.4891000 |
0.4592000 |
0.5266000 |
0.5100000 |
36.86 |
70.0 |
156 |
1000.00 |
0.81 |
55.13 |
0 |
55.13 |
0/1 |
| chr1 |
146554147 |
rs12129691 |
C |
T |
. |
PASS |
0.1180000 |
0.1354000 |
0.0268000 |
0.2694000 |
0.0808000 |
0.1252000 |
35.8 |
63.8 |
16 |
325.06 |
17.50 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
146573352 |
rs367704260 |
TG |
T |
. |
PASS |
0.1815000 |
0.0447000 |
0.0010000 |
0.0417000 |
0.1145000 |
0.0851000 |
37.0 |
70.0 |
21 |
187.15 |
28.57 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
146633933 |
rs1036852 |
G |
A |
. |
PASS |
0.9047000 |
0.5879000 |
0.8532000 |
0.4433000 |
0.6830000 |
0.7145000 |
37.0 |
70.0 |
36 |
443.96 |
9.52 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
146639588 |
rs55797044 |
A |
G |
. |
PASS |
0.1097000 |
0.0389000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0647000 |
37.0 |
70.0 |
11 |
226.81 |
2.60 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
146643495 |
rs72708505 |
C |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
36.0 |
70.0 |
54 |
779.31 |
0.93 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
146643555 |
rs1348316 |
A |
G |
. |
PASS |
0.7489000 |
0.5793000 |
0.8542000 |
0.4384000 |
0.6738000 |
0.6695000 |
36.65 |
70.0 |
87 |
1000.00 |
7.57 |
39.08 |
0 |
39.08 |
0/1 |
| chr1 |
146643580 |
rs34838459 |
G |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
36.29 |
70.0 |
89 |
1000.00 |
1.65 |
38.20 |
0 |
38.20 |
0/1 |
| chr1 |
146649777 |
rs112196423 |
G |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0417000 |
0.0982000 |
0.0487000 |
36.65 |
69.94 |
71 |
1000.00 |
9.86 |
47.89 |
0 |
47.89 |
0/1 |
| chr1 |
146650007 |
rs72708526 |
G |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0060000 |
0.0427000 |
0.1104000 |
0.0523000 |
36.52 |
69.88 |
43 |
870.35 |
1.67 |
58.14 |
0 |
58.14 |
0/1 |
| chr1 |
146650312 |
rs72708527 |
G |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
36.0 |
70.0 |
44 |
813.56 |
9.09 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
146650363 |
rs17159909 |
T |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0060000 |
0.0427000 |
0.1104000 |
0.0523000 |
37.0 |
70.0 |
41 |
758.92 |
3.10 |
53.66 |
0 |
53.66 |
0/1 |
| chr1 |
146650542 |
rs62623395 |
A |
G |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
36.61 |
69.55 |
55 |
1000.00 |
14.31 |
56.36 |
0 |
56.36 |
0/1 |
| chr1 |
146650723 |
rs62623392 |
G |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
36.4 |
70.0 |
40 |
670.53 |
5.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
146656097 |
rs72708554 |
C |
T |
. |
PASS |
0.0620000 |
0.0331000 |
0.0069000 |
0.0427000 |
0.1104000 |
0.0525000 |
36.25 |
70.0 |
27 |
542.58 |
3.70 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
146672906 |
rs894469 |
C |
T |
. |
PASS |
0.8253000 |
0.9467000 |
0.9871000 |
0.9085000 |
0.8476000 |
0.8958000 |
35.97 |
70.0 |
69 |
1000.00 |
12.75 |
50.72 |
0 |
50.72 |
0/1 |
| chr1 |
146674937 |
rs56400874 |
C |
T |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
37.0 |
70.0 |
42 |
927.14 |
15.38 |
61.90 |
0 |
61.90 |
0/1 |
| chr1 |
146675019 |
rs56047816 |
C |
T |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
37.0 |
70.0 |
19 |
286.27 |
39.77 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
146675090 |
rs55943908 |
G |
T |
. |
PASS |
0.0620000 |
0.1023000 |
0.1300000 |
0.0626000 |
0.1104000 |
0.0651000 |
37.0 |
70.0 |
36 |
690.43 |
3.33 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
146675284 |
rs10900324 |
C |
T |
. |
PASS |
0.8253000 |
0.9467000 |
0.9871000 |
0.9085000 |
0.8476000 |
0.8958000 |
37.0 |
70.0 |
68 |
1000.00 |
6.67 |
44.12 |
0 |
44.12 |
0/1 |
| chr1 |
146675382 |
rs10751403 |
T |
C |
. |
PASS |
0.9501000 |
0.9899000 |
0.9881000 |
0.9592000 |
0.9785000 |
0.9706000 |
36.36 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146675551 |
rs4950386 |
A |
G |
. |
PASS |
0.9107000 |
0.9856000 |
0.9881000 |
0.9592000 |
0.9785000 |
0.9597000 |
36.41 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146675882 |
rs72708592 |
C |
A |
. |
PASS |
0.0182000 |
0.0303000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0393000 |
37.0 |
68.67 |
24 |
517.69 |
0.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
146676006 |
rs17360003 |
A |
T |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
37.0 |
69.86 |
73 |
1000.00 |
9.48 |
50.68 |
0 |
50.68 |
0/1 |
| chr1 |
146676150 |
rs72708595 |
C |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
36.74 |
69.93 |
63 |
1000.00 |
7.11 |
73.02 |
0 |
73.02 |
0/1 |
| chr1 |
146676190 |
rs6593745 |
A |
G |
. |
PASS |
0.3351000 |
0.6988000 |
0.6637000 |
0.6630000 |
0.5787000 |
0.5651000 |
37.0 |
68.6 |
57 |
631.37 |
2.28 |
35.09 |
0 |
35.09 |
0/1 |
| chr1 |
146676207 |
rs111347700 |
T |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
36.62 |
69.94 |
57 |
1000.00 |
0.99 |
56.14 |
0 |
56.14 |
0/1 |
| chr1 |
146676241 |
rs112129766 |
A |
G |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
37.0 |
70.0 |
44 |
712.27 |
9.74 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
146676289 |
rs72708598 |
T |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
35.59 |
70.0 |
37 |
538.09 |
13.99 |
45.95 |
0 |
45.95 |
0/1 |
| chr1 |
146676339 |
rs7546434 |
A |
G |
. |
PASS |
0.8873000 |
0.9798000 |
0.9881000 |
0.9513000 |
0.9581000 |
0.9471000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146676383 |
rs55983770 |
C |
T |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1125000 |
0.0517000 |
36.56 |
69.89 |
45 |
947.87 |
1.48 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
146680334 |
rs6674643 |
G |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
37.0 |
70.0 |
13 |
262.57 |
0.00 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
146680394 |
rs6684454 |
C |
T |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1115000 |
0.0515000 |
37.0 |
70.0 |
31 |
542.54 |
2.02 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
146683873 |
rs17360059 |
C |
T |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1094000 |
0.0511000 |
37.0 |
70.0 |
19 |
244.50 |
13.16 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
146683888 |
rs28381188 |
G |
A |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
37.0 |
70.0 |
28 |
468.03 |
7.14 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
146684173 |
rs17360066 |
T |
G |
. |
PASS |
0.0620000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0513000 |
37.0 |
70.0 |
13 |
133.12 |
15.38 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
146696435 |
rs17356031 |
A |
G |
. |
PASS |
0.0613000 |
0.0331000 |
0.0010000 |
0.0427000 |
0.1104000 |
0.0511000 |
35.15 |
70.0 |
22 |
420.31 |
0.70 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
146714255 |
rs1890040 |
A |
G |
. |
PASS |
0.5802000 |
0.7608000 |
0.6736000 |
0.7306000 |
0.7638000 |
0.6901000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146714281 |
rs1890041 |
C |
G |
. |
PASS |
0.1505000 |
0.4049000 |
0.1200000 |
0.5109000 |
0.3119000 |
0.2835000 |
37.0 |
70.0 |
29 |
627.96 |
3.07 |
62.07 |
0 |
62.07 |
0/1 |
| chr1 |
146714392 |
rs1890042 |
G |
C |
. |
PASS |
0.4440000 |
0.6037000 |
0.5417000 |
0.5974000 |
0.5399000 |
0.5353000 |
37.0 |
70.0 |
91 |
1000.00 |
3.30 |
59.34 |
0 |
59.34 |
0/1 |
| chr1 |
146714427 |
rs11588753 |
G |
C |
. |
PASS |
0.0620000 |
0.1383000 |
0.1310000 |
0.1133000 |
0.1687000 |
0.1176000 |
36.16 |
70.0 |
110 |
1000.00 |
3.93 |
39.09 |
0 |
39.09 |
0/1 |
| chr1 |
146724408 |
rs3737845 |
G |
A |
. |
PASS |
0.0628000 |
0.1398000 |
0.1310000 |
0.1133000 |
0.1687000 |
0.1180000 |
36.54 |
70.0 |
44 |
909.11 |
2.80 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
146728162 |
rs61409326 |
T |
TA |
. |
PASS |
0.9372000 |
0.9885000 |
0.9881000 |
0.9592000 |
0.9775000 |
0.9669000 |
36.73 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146739277 |
rs4143738 |
T |
C |
. |
PASS |
0.5628000 |
0.6081000 |
0.5556000 |
0.6014000 |
0.5368000 |
0.5703000 |
35.0 |
70.0 |
14 |
164.00 |
19.05 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
146740576 |
rs11576360 |
G |
A |
. |
PASS |
0.6339000 |
0.8112000 |
0.6667000 |
0.8380000 |
0.7935000 |
0.7372000 |
37.0 |
70.0 |
40 |
640.77 |
1.84 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
146747153 |
rs6680778 |
T |
C |
. |
PASS |
0.5703000 |
0.8012000 |
0.6667000 |
0.8300000 |
0.7914000 |
0.7171000 |
37.0 |
70.0 |
63 |
1000.00 |
4.56 |
50.79 |
0 |
50.79 |
0/1 |
| chr1 |
146747232 |
rs6672850 |
C |
T |
. |
PASS |
0.3041000 |
0.3372000 |
0.4216000 |
0.3350000 |
0.2924000 |
0.3363000 |
37.0 |
70.0 |
14 |
259.56 |
10.71 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
146748008 |
rs3831929 |
CAGCCA |
C |
. |
PASS |
0.3041000 |
0.3372000 |
0.4216000 |
0.3350000 |
0.2924000 |
0.3363000 |
35.5 |
70.0 |
18 |
225.94 |
5.56 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
146751782 |
rs7547279 |
A |
C |
. |
PASS |
0.9433000 |
0.9885000 |
0.9881000 |
0.9592000 |
0.9744000 |
0.9679000 |
36.56 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146756222 |
rs368960193,rs146052781 |
AAAAC |
A |
. |
PASS |
0.2882000 |
0.3372000 |
0.3919000 |
0.3320000 |
0.2914000 |
0.3253000 |
35.08 |
70.0 |
24 |
394.70 |
10.26 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
146757923 |
rs9661159 |
G |
A |
. |
PASS |
0.0204000 |
0.1354000 |
0.1300000 |
0.1143000 |
0.1687000 |
0.1062000 |
35.91 |
70.0 |
23 |
345.76 |
3.16 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
146759320 |
rs2275249 |
C |
G |
. |
PASS |
0.0174000 |
0.1383000 |
0.1270000 |
0.1143000 |
0.1687000 |
0.1052000 |
37.0 |
70.0 |
46 |
660.33 |
0.00 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
146763089 |
rs10900333 |
G |
A |
. |
PASS |
0.9342000 |
0.7954000 |
0.8958000 |
0.7276000 |
0.7198000 |
0.8239000 |
37.0 |
70.0 |
16 |
550.94 |
8.33 |
93.75 |
0 |
93.75 |
1/1 |
| chr1 |
146765454 |
rs2297752 |
C |
G |
. |
PASS |
0.4160000 |
0.1873000 |
0.3155000 |
0.1223000 |
0.1800000 |
0.2590000 |
37.0 |
70.0 |
41 |
633.61 |
14.89 |
46.34 |
0 |
46.34 |
0/1 |
| chr1 |
146766069 |
rs71083827,rs75717265 |
C |
CAT |
. |
PASS |
0.9440000 |
0.9885000 |
0.9881000 |
0.9592000 |
0.9744000 |
0.9681000 |
36.55 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
146767062 |
rs7516430 |
A |
G |
. |
PASS |
0.4160000 |
0.1873000 |
0.3155000 |
0.1223000 |
0.1810000 |
0.2592000 |
37.0 |
70.0 |
10 |
104.51 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
146767149 |
rs4950394 |
G |
T |
. |
PASS |
0.9440000 |
0.9885000 |
0.9881000 |
0.9592000 |
0.9744000 |
0.9681000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147087721 |
rs3737843 |
T |
A |
. |
PASS |
0.0174000 |
0.3343000 |
0.4028000 |
0.5278000 |
0.4029000 |
0.3167000 |
36.54 |
69.23 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147091972 |
rs3820129 |
C |
T |
. |
PASS |
0.0227000 |
0.2061000 |
0.0982000 |
0.4125000 |
0.2290000 |
0.1819000 |
35.86 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147092881 |
rs41295835 |
C |
T |
. |
PASS |
0.0015000 |
0.0173000 |
0.0000000 |
0.0557000 |
0.0082000 |
0.0155750 |
36.4 |
70.0 |
45 |
655.48 |
6.67 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
147096794 |
rs867270 |
A |
G |
. |
PASS |
0.8585000 |
0.8862000 |
0.7093000 |
0.8847000 |
0.8620000 |
0.8383000 |
35.97 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147096828 |
rs946902 |
C |
G |
. |
PASS |
0.8638000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9635000 |
37.0 |
70.0 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147119273 |
rs1344 |
G |
A |
. |
PASS |
0.4281000 |
0.6254000 |
0.4226000 |
0.5765000 |
0.4029000 |
0.4792000 |
36.09 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147121977 |
rs6593795 |
C |
T |
. |
PASS |
0.9418000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9844000 |
36.66 |
70.0 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147124310 |
rs2153463 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.84 |
70.0 |
154 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147131465 |
rs6674938 |
T |
C |
. |
PASS |
0.7383000 |
0.7622000 |
0.7163000 |
0.7187000 |
0.5746000 |
0.7013000 |
37.0 |
68.46 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147131501 |
rs34675044 |
A |
T |
. |
PASS |
0.1672000 |
0.4006000 |
0.1151000 |
0.4334000 |
0.2413000 |
0.2570000 |
36.17 |
69.31 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147313422 |
rs56163465 |
G |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.73 |
69.86 |
130 |
1000.00 |
1.61 |
33.85 |
0 |
33.85 |
0/1 |
| chr1 |
147314153 |
rs10900400 |
A |
G |
. |
PASS |
0.1150000 |
0.2089000 |
0.2480000 |
0.1710000 |
0.0593000 |
0.1552000 |
35.8 |
70.0 |
16 |
325.06 |
10.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
147381444 |
rs1532399 |
A |
C |
. |
PASS |
0.3404000 |
0.6902000 |
0.7034000 |
0.7704000 |
0.7975000 |
0.6376000 |
35.11 |
70.0 |
19 |
717.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147561737 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.71 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
147597152 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.79 |
70 |
550.48 |
65.71 |
27.14 |
0 |
27.14 |
0/1 |
| chr1 |
147597158 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
54.26 |
77 |
696.50 |
67.53 |
29.87 |
0 |
29.87 |
0/1 |
| chr1 |
147597166 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.38 |
93 |
1000.00 |
58.27 |
34.41 |
0 |
34.41 |
0/1 |
| chr1 |
147597303 |
rs201826633 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.12 |
89 |
367.96 |
1.69 |
17.98 |
0 |
17.98 |
0/1 |
| chr1 |
147597316 |
rs200147526 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.44 |
69 |
131.62 |
23.19 |
13.04 |
0 |
13.04 |
0/1 |
| chr1 |
147597385 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.5 |
13 |
174.87 |
0.00 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
147597400 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.5 |
11 |
97.35 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
147706326 |
rs113982312 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.6 |
11 |
143.27 |
0.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
147706526 |
rs142484702 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.04 |
69.6 |
116 |
638.62 |
8.07 |
21.55 |
0 |
21.55 |
0/1 |
| chr1 |
147706592 |
rs139101841 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.6 |
23 |
103.01 |
52.17 |
21.74 |
0 |
21.74 |
0/1 |
| chr1 |
147737081 |
rs141494088 |
C |
CG |
. |
PASS |
0.4039000 |
0.5375000 |
0.3482000 |
0.6720000 |
0.5317000 |
0.4900000 |
36.15 |
69.97 |
119 |
1000.00 |
0.26 |
96.64 |
0 |
98.32 |
1/1 |
| chr1 |
147801279 |
rs41286753 |
C |
T |
. |
PASS |
0.0008000 |
0.0072000 |
0.0000000 |
0.0149000 |
0.0031000 |
0.0047923 |
36.45 |
70.0 |
60 |
693.87 |
6.67 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
147920976 |
rs147643443 |
G |
A |
. |
PASS |
0.3684000 |
0.4914000 |
0.5536000 |
0.4573000 |
0.4744000 |
0.4613000 |
35.71 |
54.82 |
84 |
821.51 |
6.61 |
32.14 |
0 |
33.33 |
0/1 |
| chr1 |
147931153 |
. |
A |
AC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.8 |
16 |
112.63 |
0.00 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
147931297 |
rs201285075 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.82 |
51.73 |
167 |
1000.00 |
7.93 |
39.52 |
0 |
39.52 |
0/1 |
| chr1 |
147931379 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
60.18 |
82 |
623.50 |
8.65 |
26.83 |
0 |
26.83 |
0/1 |
| chr1 |
148004396 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
53.0 |
17 |
109.06 |
0.00 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
148004402 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.0 |
18 |
122.20 |
0.00 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
148004407 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.0 |
18 |
118.05 |
0.00 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
148004409 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.0 |
18 |
122.21 |
0.00 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
148004440 |
rs61810197 |
C |
A |
. |
PASS |
0.0061000 |
0.1427000 |
0.1220000 |
0.1312000 |
0.2566000 |
0.1224000 |
37.0 |
68.58 |
30 |
374.32 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
148004472 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
65.7 |
45 |
655.48 |
8.89 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
148004475 |
rs367648584 |
C |
G |
. |
PASS |
0.3283000 |
0.0865000 |
0.0784000 |
0.0209000 |
0.0706000 |
0.1324000 |
37.0 |
65.61 |
52 |
767.58 |
14.38 |
44.23 |
0 |
44.23 |
0/1 |
| chr1 |
148004568 |
rs78765201 |
C |
A |
. |
PASS |
0.1755000 |
0.0533000 |
0.0228000 |
0.0606000 |
0.0491000 |
0.0801000 |
36.52 |
40.28 |
298 |
98.66 |
26.04 |
8.39 |
0 |
8.39 |
0/1 |
| chr1 |
148004584 |
rs78822109 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
39.92 |
327 |
475.02 |
19.98 |
11.01 |
0 |
11.01 |
0/1 |
| chr1 |
148004625 |
rs144324257 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
38.97 |
270 |
809.51 |
19.81 |
14.81 |
0 |
14.81 |
0/1 |
| chr1 |
148016252 |
rs377696733 |
C |
G |
. |
PASS |
0.0121000 |
0.1830000 |
0.1597000 |
0.1750000 |
0.3640000 |
0.1669000 |
37.0 |
31.33 |
14 |
422.48 |
0.00 |
85.71 |
0 |
85.71 |
0/1 |
| chr1 |
148016393 |
rs141716445 |
A |
C |
. |
PASS |
0.1165000 |
0.0259000 |
0.0784000 |
0.0249000 |
0.0429000 |
0.0635000 |
36.19 |
47.92 |
146 |
1000.00 |
9.84 |
40.41 |
0 |
40.41 |
0/1 |
| chr1 |
148017420 |
rs202063086 |
C |
G |
. |
PASS |
0.0061000 |
0.1369000 |
0.1290000 |
0.1282000 |
0.2372000 |
0.1186000 |
37.0 |
33.4 |
15 |
127.08 |
13.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
148017424 |
rs200095021 |
G |
C |
. |
PASS |
0.2216000 |
0.4395000 |
0.4980000 |
0.3887000 |
0.4724000 |
0.3900000 |
37.0 |
39.14 |
14 |
213.63 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
148017578 |
rs146750541 |
C |
T |
. |
PASS |
0.0061000 |
0.1369000 |
0.1290000 |
0.1282000 |
0.2362000 |
0.1184000 |
37.0 |
48.89 |
171 |
622.41 |
8.90 |
16.37 |
0 |
16.37 |
0/1 |
| chr1 |
148022984 |
rs9441420 |
T |
C |
. |
PASS |
0.0446000 |
0.0130000 |
0.0050000 |
0.0099000 |
0.0143000 |
0.0193690 |
35.15 |
34.77 |
96 |
197.58 |
17.31 |
13.54 |
0 |
13.54 |
0/1 |
| chr1 |
148023040 |
rs200232291 |
G |
C |
. |
PASS |
0.0182000 |
0.1671000 |
0.1429000 |
0.1590000 |
0.3190000 |
0.1510000 |
36.68 |
53.35 |
141 |
1000.00 |
17.33 |
26.24 |
0 |
26.24 |
0/1 |
| chr1 |
148023067 |
rs200903994 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.08 |
124 |
137.33 |
18.24 |
10.48 |
0 |
10.48 |
0/1 |
| chr1 |
148023146 |
rs201001638 |
TG |
T |
. |
PASS |
0.0545000 |
0.0130000 |
0.0605000 |
0.0199000 |
0.0256000 |
0.0373000 |
36.45 |
47.18 |
50 |
260.95 |
0.36 |
22.00 |
0 |
22.00 |
0/1 |
| chr1 |
148023207 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
43.4 |
16 |
128.22 |
12.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
148023399 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
65.67 |
15 |
156.85 |
13.33 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
148023403 |
rs201620940 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
54.25 |
15 |
77.45 |
13.33 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
148023418 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
67.4 |
29 |
285.93 |
20.69 |
34.48 |
0 |
34.48 |
0/1 |
| chr1 |
148023426 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
35 |
71.04 |
17.14 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
148023467 |
rs371979685 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.7 |
47 |
661.47 |
8.51 |
42.55 |
0 |
42.55 |
0/1 |
| chr1 |
148023489 |
rs150361541 |
C |
T |
. |
PASS |
0.1944000 |
0.3473000 |
0.4851000 |
0.2445000 |
0.3722000 |
0.3189000 |
37.0 |
48.09 |
50 |
777.75 |
3.30 |
46.00 |
0 |
46.00 |
0/1 |
| chr1 |
148023509 |
rs140737308 |
G |
A |
. |
PASS |
0.6483000 |
0.4957000 |
0.4683000 |
0.4911000 |
0.4898000 |
0.5284000 |
35.67 |
52.33 |
54 |
532.84 |
14.81 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
148024903 |
rs75510304 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
38.45 |
92 |
150.09 |
7.71 |
11.96 |
0 |
11.96 |
0/1 |
| chr1 |
148024958 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
62.86 |
44 |
407.86 |
26.62 |
31.82 |
0 |
31.82 |
0/1 |
| chr1 |
148024964 |
rs61810799 |
A |
G |
. |
PASS |
0.5348000 |
0.2795000 |
0.2173000 |
0.1779000 |
0.3609000 |
0.3299000 |
36.73 |
59.13 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
148025606 |
rs78327296 |
C |
T |
. |
PASS |
0.8313000 |
0.6614000 |
0.6230000 |
0.6133000 |
0.7147000 |
0.6993000 |
36.25 |
60.62 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
148251874 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
47.19 |
180 |
541.58 |
19.26 |
15.00 |
0 |
15.00 |
0/1 |
| chr1 |
148252049 |
rs201353547 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
48.12 |
60 |
104.94 |
43.33 |
13.33 |
0 |
13.33 |
0/1 |
| chr1 |
148335696 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.5 |
19 |
323.89 |
42.11 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
148341745 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.67 |
12 |
56.72 |
50.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
148341812 |
rs202096824 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.0 |
56 |
133.14 |
35.71 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
148341920 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
49.57 |
130 |
437.25 |
7.84 |
16.15 |
0 |
16.15 |
0/1 |
| chr1 |
148342066 |
rs61809875 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.2 |
29 |
293.80 |
27.59 |
34.48 |
0 |
34.48 |
0/1 |
| chr1 |
148342089 |
. |
GAC |
GGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.75 |
13 |
59.73 |
30.77 |
23.08 |
1 |
30.77 |
0/1 |
| chr1 |
148342090 |
rs61809876 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.75 |
11 |
101.50 |
36.36 |
36.36 |
1 |
36.36 |
0/1 |
| chr1 |
148342345 |
. |
A |
T |
. |
PASS |
0.0522000 |
0.1037000 |
0.1488000 |
0.1133000 |
0.1022000 |
0.1008000 |
34.0 |
48.0 |
21 |
55.25 |
0.00 |
19.05 |
0 |
19.05 |
0/1 |
| chr1 |
148342369 |
rs61809880 |
A |
G |
. |
PASS |
0.1967000 |
0.3256000 |
0.3859000 |
0.3757000 |
0.3241000 |
0.3135000 |
37.0 |
55.86 |
30 |
169.63 |
13.33 |
23.33 |
0 |
23.33 |
0/1 |
| chr1 |
148342373 |
rs61809881 |
C |
T |
. |
PASS |
0.1967000 |
0.3256000 |
0.3859000 |
0.3757000 |
0.3241000 |
0.3135000 |
37.0 |
54.5 |
34 |
115.82 |
11.76 |
17.65 |
0 |
17.65 |
0/1 |
| chr1 |
148342446 |
rs498452 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.11 |
57.15 |
147 |
624.70 |
18.29 |
18.37 |
0 |
18.37 |
0/1 |
| chr1 |
148342488 |
rs3863697 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.77 |
193 |
1000.00 |
0.08 |
20.21 |
0 |
22.28 |
0/1 |
| chr1 |
148342562 |
rs200973419 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
54.94 |
129 |
874.14 |
0.10 |
24.03 |
0 |
24.03 |
0/1 |
| chr1 |
148344469 |
rs61809888 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.6 |
10 |
142.13 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
148344557 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.62 |
68 |
97.02 |
26.47 |
11.76 |
0 |
11.76 |
0/1 |
| chr1 |
148344564 |
rs3895198 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
52.74 |
75 |
1000.00 |
11.14 |
45.33 |
0 |
45.33 |
0/1 |
| chr1 |
148344624 |
rs75650621 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
56.37 |
240 |
1000.00 |
5.83 |
50.00 |
0 |
63.75 |
0/1 |
| chr1 |
148344627 |
rs61809889 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.41 |
68.0 |
246 |
915.68 |
16.26 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
148344660 |
rs61809890 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.26 |
270 |
445.59 |
24.37 |
11.48 |
0 |
11.48 |
0/1 |
| chr1 |
148344741 |
rs61809891 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.56 |
52.68 |
95 |
685.67 |
45.89 |
26.32 |
0 |
26.32 |
0/1 |
| chr1 |
148344843 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.0 |
39.25 |
15 |
61.29 |
0.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
148344858 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
39.25 |
15 |
73.30 |
0.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
148346783 |
. |
A |
G |
. |
PASS |
0.0174000 |
0.0058000 |
0.0060000 |
0.0089000 |
0.0153000 |
0.0113820 |
37.0 |
42.1 |
45 |
249.79 |
17.78 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
148346785 |
. |
T |
C |
. |
PASS |
0.0174000 |
0.0058000 |
0.0060000 |
0.0089000 |
0.0153000 |
0.0113820 |
37.0 |
40.44 |
42 |
217.06 |
17.46 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
148544980 |
. |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0082000 |
0.0019968 |
35.5 |
68.88 |
67 |
88.04 |
4.48 |
11.94 |
0 |
11.94 |
0/1 |
| chr1 |
148579625 |
rs201422830 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.5 |
31 |
208.39 |
13.71 |
25.81 |
0 |
25.81 |
0/1 |
| chr1 |
148579636 |
rs200012164 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.67 |
44 |
85.72 |
59.09 |
13.64 |
0 |
13.64 |
0/1 |
| chr1 |
148588954 |
. |
ACTG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
31.16 |
86 |
468.73 |
16.03 |
22.09 |
0 |
22.09 |
0/1 |
| chr1 |
148588978 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
24.36 |
90 |
151.96 |
34.75 |
12.22 |
0 |
12.22 |
0/1 |
| chr1 |
148756499 |
rs201435207 |
A |
G |
. |
PASS |
0.3608000 |
0.4568000 |
0.3978000 |
0.4632000 |
0.3926000 |
0.4083000 |
35.67 |
45.0 |
11 |
298.35 |
10.10 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
148756515 |
rs74698828 |
A |
C |
. |
PASS |
0.8275000 |
0.8660000 |
0.9087000 |
0.8837000 |
0.7975000 |
0.8546000 |
35.91 |
41.55 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
148756607 |
rs373485062 |
G |
T |
. |
PASS |
0.5734000 |
0.7565000 |
0.6974000 |
0.7535000 |
0.6728000 |
0.6793000 |
36.0 |
44.92 |
15 |
407.46 |
3.33 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
148806435 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.6 |
24 |
312.99 |
58.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
148806473 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.2 |
17 |
121.06 |
70.59 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
148873322 |
rs3881802 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.0 |
14 |
50.70 |
52.38 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
148873483 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.62 |
227 |
495.64 |
3.16 |
12.78 |
0 |
12.78 |
0/1 |
| chr1 |
148873574 |
rs74545317 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
66.39 |
72 |
695.38 |
6.88 |
31.94 |
0 |
31.94 |
0/1 |
| chr1 |
148873584 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.75 |
67 |
100.03 |
38.81 |
11.94 |
0 |
11.94 |
0/1 |
| chr1 |
148873588 |
rs201184728 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.43 |
62 |
361.56 |
21.20 |
22.58 |
0 |
22.58 |
0/1 |
| chr1 |
148876254 |
rs199583343 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
38.0 |
33 |
156.44 |
11.26 |
21.21 |
0 |
21.21 |
0/1 |
| chr1 |
148876274 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.0 |
47 |
76.70 |
2.13 |
12.77 |
0 |
12.77 |
0/1 |
| chr1 |
148876294 |
rs200827760 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
40.27 |
67 |
392.42 |
12.54 |
22.39 |
0 |
22.39 |
0/1 |
| chr1 |
148876343 |
rs201760311 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.11 |
93 |
63.56 |
1.43 |
9.68 |
0 |
9.68 |
0/1 |
| chr1 |
148876400 |
rs421825 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.84 |
101 |
457.17 |
5.52 |
18.81 |
0 |
18.81 |
0/1 |
| chr1 |
148876411 |
rs446702 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
59.63 |
92 |
468.11 |
5.95 |
20.65 |
0 |
20.65 |
0/1 |
| chr1 |
148876432 |
rs79353130 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.78 |
66 |
140.67 |
12.12 |
13.64 |
0 |
13.64 |
0/1 |
| chr1 |
148876490 |
rs75373855 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
53.78 |
48 |
187.00 |
4.17 |
18.75 |
0 |
18.75 |
0/1 |
| chr1 |
148876492 |
rs76087296 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.0 |
39 |
120.25 |
33.33 |
15.38 |
0 |
30.77 |
0/1 |
| chr1 |
148876534 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.0 |
25 |
101.14 |
0.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
148876559 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.0 |
23 |
61.23 |
0.00 |
17.39 |
0 |
17.39 |
0/1 |
| chr1 |
148876568 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
53.0 |
20 |
62.40 |
0.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
148876595 |
rs4089281 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.5 |
15 |
85.32 |
0.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
148881996 |
rs377397732 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
62.86 |
69 |
344.63 |
21.33 |
20.29 |
0 |
20.29 |
0/1 |
| chr1 |
148882326 |
rs372814763 |
C |
A |
. |
PASS |
0.3048000 |
0.3199000 |
0.2659000 |
0.4622000 |
0.4039000 |
0.3500000 |
37.0 |
53.11 |
101 |
453.03 |
14.17 |
18.81 |
0 |
18.81 |
0/1 |
| chr1 |
148882389 |
rs200751874 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.0 |
59 |
203.50 |
62.03 |
16.95 |
0 |
16.95 |
0/1 |
| chr1 |
148882472 |
rs199851052 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.25 |
18 |
80.43 |
0.00 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
148887541 |
rs149126785 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
54.6 |
12 |
140.26 |
6.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
148888070 |
rs377229012 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
47.25 |
33 |
190.36 |
21.21 |
24.24 |
0 |
24.24 |
0/1 |
| chr1 |
148888276 |
rs71257934 |
C |
CAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
42.62 |
20 |
345.22 |
5.00 |
40.00 |
0 |
55.00 |
0/1 |
| chr1 |
148889543 |
rs56278457 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.07 |
58.52 |
203 |
1000.00 |
6.37 |
45.32 |
0 |
45.32 |
0/1 |
| chr1 |
148889550 |
. |
TTAA |
TT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
223 |
682.72 |
8.28 |
40.36 |
1 |
55.61 |
0/1 |
| chr1 |
148889551 |
rs76691563 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.27 |
66.55 |
211 |
682.72 |
2.38 |
15.64 |
1 |
15.64 |
0/1 |
| chr1 |
148889551 |
. |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
68.74 |
212 |
1000.00 |
6.71 |
40.57 |
1 |
40.57 |
0/1 |
| chr1 |
148889552 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
68.74 |
213 |
1000.00 |
8.21 |
40.38 |
1 |
40.38 |
0/1 |
| chr1 |
148889699 |
rs10157381 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.28 |
64.13 |
259 |
1000.00 |
3.58 |
38.61 |
0 |
38.61 |
0/1 |
| chr1 |
148889778 |
rs61788508 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
58.34 |
77 |
1000.00 |
2.19 |
41.56 |
0 |
41.56 |
0/1 |
| chr1 |
148889889 |
rs71264326 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.0 |
18 |
163.98 |
22.22 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
148890173 |
rs170528 |
A |
C |
. |
PASS |
0.9440000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9848000 |
35.36 |
55.58 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
148890273 |
rs200628157 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.76 |
98 |
549.73 |
12.24 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
148891643 |
rs200975583 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.53 |
126 |
214.85 |
33.97 |
11.90 |
0 |
11.90 |
0/1 |
| chr1 |
148891675 |
rs148986249 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.37 |
160 |
1000.00 |
1.62 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
148891790 |
rs151025 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
68.21 |
61 |
352.56 |
7.96 |
22.95 |
0 |
22.95 |
0/1 |
| chr1 |
148902223 |
rs151007 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
61.5 |
28 |
205.41 |
14.29 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
148902298 |
rs6708279 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
46.11 |
90 |
60.57 |
22.22 |
10.00 |
0 |
10.00 |
0/1 |
| chr1 |
148902392 |
rs2531506 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.94 |
43.85 |
277 |
517.94 |
7.07 |
12.27 |
0 |
12.27 |
0/1 |
| chr1 |
148902416 |
rs28510245 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
47.52 |
300 |
1000.00 |
17.19 |
18.00 |
0 |
18.00 |
0/1 |
| chr1 |
148902483 |
rs55993601 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
58.9 |
179 |
1000.00 |
7.72 |
77.09 |
0 |
77.09 |
0/1 |
| chr1 |
148902522 |
rs77238322 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.06 |
55.38 |
203 |
1000.00 |
16.24 |
43.84 |
0 |
43.84 |
0/1 |
| chr1 |
148902589 |
. |
TAC |
TGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
54.91 |
205 |
1000.00 |
4.70 |
39.02 |
0 |
39.02 |
0/1 |
| chr1 |
148902627 |
rs71258377 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
50.62 |
166 |
1000.00 |
7.89 |
34.94 |
0 |
34.94 |
0/1 |
| chr1 |
148902659 |
rs143619209 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.77 |
49.33 |
108 |
1000.00 |
11.68 |
36.11 |
0 |
36.11 |
0/1 |
| chr1 |
148902759 |
rs200898882 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.33 |
40 |
720.16 |
13.81 |
52.50 |
0 |
52.50 |
0/1 |
| chr1 |
148902833 |
rs201726721 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
46.75 |
26 |
541.44 |
30.77 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
148902979 |
rs151092652 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
56.15 |
151 |
1000.00 |
2.95 |
31.79 |
0 |
31.79 |
0/1 |
| chr1 |
148903047 |
rs145813307 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
59.09 |
206 |
1000.00 |
4.97 |
33.01 |
0 |
33.01 |
0/1 |
| chr1 |
148903089 |
rs199822054 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
61.68 |
215 |
90.03 |
4.80 |
8.84 |
0 |
8.84 |
0/1 |
| chr1 |
148903118 |
rs200471450 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
59.5 |
216 |
892.65 |
33.14 |
17.59 |
0 |
17.59 |
0/1 |
| chr1 |
148903133 |
rs201570727 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.56 |
61.0 |
199 |
376.81 |
26.49 |
12.56 |
0 |
12.56 |
0/1 |
| chr1 |
148903226 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
54.25 |
147 |
360.49 |
18.84 |
13.61 |
0 |
13.61 |
0/1 |
| chr1 |
148903238 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.78 |
160 |
818.45 |
17.50 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
148903246 |
rs79611996 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.27 |
52.52 |
166 |
822.28 |
24.79 |
19.88 |
0 |
19.88 |
0/1 |
| chr1 |
148903313 |
rs76621361 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
51.02 |
219 |
1000.00 |
6.16 |
22.83 |
0 |
22.83 |
0/1 |
| chr1 |
148903375 |
rs143965084 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.17 |
111 |
594.15 |
30.40 |
20.72 |
0 |
20.72 |
0/1 |
| chr1 |
148903507 |
rs142037290 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
52.52 |
81 |
1000.00 |
28.91 |
38.27 |
0 |
38.27 |
0/1 |
| chr1 |
148903547 |
rs76622879 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.18 |
93 |
147.09 |
79.57 |
11.83 |
0 |
11.83 |
0/1 |
| chr1 |
148903577 |
rs79177226 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.19 |
96 |
346.93 |
33.33 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
148903615 |
. |
CGG |
CAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.71 |
46.71 |
77 |
305.59 |
33.77 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
148903639 |
rs74758496 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.38 |
61 |
661.10 |
22.17 |
34.43 |
0 |
34.43 |
0/1 |
| chr1 |
148903758 |
rs61786300 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
57.65 |
134 |
1000.00 |
4.38 |
44.78 |
0 |
44.78 |
0/1 |
| chr1 |
148932713 |
rs372189157 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.88 |
35 |
196.35 |
5.71 |
22.86 |
0 |
22.86 |
0/1 |
| chr1 |
148932843 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
54.64 |
292 |
1000.00 |
5.81 |
26.37 |
0 |
26.37 |
0/1 |
| chr1 |
148932848 |
rs13653 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.89 |
54.49 |
292 |
1000.00 |
1.20 |
36.30 |
0 |
36.30 |
0/1 |
| chr1 |
148932885 |
rs1048214 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.47 |
68.94 |
295 |
970.77 |
1.30 |
15.93 |
0 |
15.93 |
0/1 |
| chr1 |
148932965 |
rs200950551 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.38 |
72 |
753.30 |
13.89 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
149065368 |
rs5006227 |
C |
A |
. |
PASS |
0.0182000 |
0.0346000 |
0.0585000 |
0.0457000 |
0.0961000 |
0.0493000 |
37.0 |
30.0 |
25 |
55.21 |
36.00 |
16.00 |
0 |
16.00 |
0/1 |
| chr1 |
149261236 |
rs138043743 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
57.59 |
42 |
743.90 |
4.33 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
149261248 |
rs149782666 |
C |
T |
. |
PASS |
0.3850000 |
0.4020000 |
0.3254000 |
0.4414000 |
0.4448000 |
0.3984000 |
36.4 |
57.05 |
41 |
667.52 |
7.80 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
149262467 |
rs71620886 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.1 |
59 |
203.50 |
11.53 |
16.95 |
0 |
16.95 |
0/1 |
| chr1 |
149262528 |
rs75608424 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
66.69 |
101 |
984.03 |
20.36 |
31.68 |
0 |
31.68 |
0/1 |
| chr1 |
149262554 |
rs656978 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
67.0 |
109 |
1000.00 |
19.86 |
41.28 |
0 |
41.28 |
0/1 |
| chr1 |
149262915 |
rs2787771 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
82 |
96.66 |
90.24 |
10.98 |
0 |
10.98 |
0/1 |
| chr1 |
149263435 |
rs145340638 |
T |
A |
. |
PASS |
0.4970000 |
0.4769000 |
0.4405000 |
0.4791000 |
0.5164000 |
0.4830000 |
36.63 |
58.65 |
119 |
1000.00 |
3.78 |
54.62 |
0 |
54.62 |
0/1 |
| chr1 |
149263441 |
rs145816098 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.8 |
58.21 |
115 |
1000.00 |
7.13 |
53.04 |
0 |
53.04 |
0/1 |
| chr1 |
149263481 |
rs199582966,rs150102858 |
C |
CA |
. |
PASS |
0.4826000 |
0.4452000 |
0.3462000 |
0.3907000 |
0.4939000 |
0.4337000 |
35.86 |
54.95 |
80 |
1000.00 |
8.33 |
52.50 |
0 |
52.50 |
0/1 |
| chr1 |
149263614 |
rs200625415 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.5 |
11 |
97.35 |
36.36 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
149291003 |
rs201487380 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
63.5 |
61 |
261.15 |
41.80 |
19.67 |
0 |
19.67 |
0/1 |
| chr1 |
149370665 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.5 |
22 |
68.39 |
18.18 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
149552999 |
rs138613319 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
43.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
149553054 |
rs200683730 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.11 |
44.44 |
31 |
978.00 |
0.48 |
87.10 |
0 |
87.10 |
0/1 |
| chr1 |
149553166 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
45.67 |
27 |
500.81 |
14.81 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
149553176 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.86 |
19 |
202.74 |
27.07 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
149576430 |
. |
ACCTCCT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.2 |
66.0 |
11 |
282.78 |
0.00 |
90.91 |
0 |
90.91 |
0/1 |
| chr1 |
149576441 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
66.0 |
12 |
337.10 |
0.00 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
149576823 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.09 |
17 |
375.83 |
6.42 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
149646759 |
. |
C |
T |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0119000 |
0.0031000 |
0.0033946 |
37.0 |
54.36 |
17 |
375.84 |
8.56 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
149646993 |
rs150617669 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.29 |
31 |
162.47 |
51.61 |
22.58 |
0 |
22.58 |
0/1 |
| chr1 |
149647154 |
rs1756043 |
A |
C |
. |
PASS |
0.9077000 |
0.9121000 |
0.8056000 |
0.9920000 |
0.9540000 |
0.9137000 |
36.25 |
56.6 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
149647183 |
rs74996416 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
56.67 |
74 |
981.75 |
9.55 |
40.54 |
0 |
40.54 |
0/1 |
| chr1 |
149647518 |
rs139909939 |
A |
T |
. |
PASS |
0.2443000 |
0.4827000 |
0.5942000 |
0.5994000 |
0.4264000 |
0.4547000 |
35.0 |
63.5 |
17 |
150.82 |
11.76 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
149648130 |
rs479085 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.17 |
63.9 |
66 |
952.05 |
9.82 |
43.94 |
0 |
43.94 |
0/1 |
| chr1 |
149648156 |
. |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.8 |
57 |
422.53 |
70.18 |
26.32 |
0 |
26.32 |
0/1 |
| chr1 |
149648168 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.0 |
60 |
329.95 |
73.33 |
21.67 |
0 |
21.67 |
0/1 |
| chr1 |
149648285 |
rs147167068 |
GAGTTCTAAACA |
G |
. |
PASS |
0.4561000 |
0.3804000 |
0.1687000 |
0.3280000 |
0.4785000 |
0.3664000 |
35.53 |
63.88 |
41 |
465.83 |
8.32 |
41.46 |
0 |
41.46 |
0/1 |
| chr1 |
149648547 |
rs482887 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.18 |
59.55 |
177 |
1000.00 |
4.19 |
41.24 |
0 |
41.24 |
0/1 |
| chr1 |
149648627 |
rs2481101 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.03 |
69.12 |
236 |
1000.00 |
3.79 |
67.80 |
0 |
68.22 |
0/1 |
| chr1 |
149648696 |
rs654715 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
68.98 |
225 |
1000.00 |
6.06 |
37.33 |
0 |
37.33 |
0/1 |
| chr1 |
149676401 |
rs146138154 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.89 |
58.8 |
249 |
1000.00 |
3.34 |
45.78 |
0 |
45.78 |
0/1 |
| chr1 |
149726032 |
rs2664744 |
T |
C |
. |
PASS |
0.4970000 |
0.4986000 |
0.5000000 |
0.4970000 |
0.5000000 |
0.4984000 |
36.08 |
50.23 |
23 |
429.30 |
18.73 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
149726118 |
rs2664745 |
A |
G |
. |
PASS |
0.5008000 |
0.5014000 |
0.5000000 |
0.5000000 |
0.5000000 |
0.5004000 |
35.0 |
44.67 |
12 |
170.03 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
149783886 |
rs139776319 |
C |
T |
. |
PASS |
0.0068000 |
0.0331000 |
0.0010000 |
0.0915000 |
0.0082000 |
0.0266000 |
36.14 |
67.64 |
68 |
908.42 |
7.56 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
149784689 |
rs370907162 |
CCCA |
C |
. |
PASS |
0.0734000 |
0.0317000 |
0.0000000 |
0.0924000 |
0.0082000 |
0.0266000 |
37.0 |
69.0 |
16 |
199.19 |
0.00 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
149784752 |
. |
C |
T |
. |
PASS |
0.0008000 |
0.0101000 |
0.0069000 |
0.0417000 |
0.0358000 |
0.0183710 |
35.11 |
69.05 |
44 |
592.70 |
18.18 |
43.18 |
0 |
43.18 |
0/1 |
| chr1 |
149813866 |
rs200138530 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.6 |
21 |
113.17 |
15.24 |
23.81 |
0 |
23.81 |
0/1 |
| chr1 |
149813886 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.89 |
27 |
262.19 |
7.41 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
149815013 |
rs3029050 |
GCTCC |
G |
. |
PASS |
0.3086000 |
0.0375000 |
0.0079000 |
0.0457000 |
0.0389000 |
0.1050000 |
37.0 |
65.43 |
22 |
187.15 |
72.73 |
31.82 |
1 |
31.82 |
0/1 |
| chr1 |
149815015 |
. |
TC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.43 |
19 |
193.17 |
63.16 |
36.84 |
1 |
36.84 |
0/1 |
| chr1 |
149815016 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.43 |
19 |
193.17 |
63.16 |
36.84 |
1 |
36.84 |
0/1 |
| chr1 |
149821912 |
rs138035086 |
CGGAG |
C |
. |
PASS |
0.3086000 |
0.0418000 |
0.0129000 |
0.0457000 |
0.0389000 |
0.1066000 |
34.43 |
56.71 |
13 |
193.22 |
26.37 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
149823060 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.67 |
28 |
133.87 |
0.00 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
149871905 |
rs1044808 |
G |
C |
. |
PASS |
0.0008000 |
0.0288000 |
0.0000000 |
0.0865000 |
0.0082000 |
0.0232000 |
36.83 |
70.0 |
114 |
1000.00 |
0.44 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
149880863 |
rs68002561 |
A |
G |
. |
PASS |
0.4652000 |
0.0821000 |
0.0010000 |
0.0944000 |
0.0112000 |
0.1556000 |
37.0 |
70.0 |
33 |
536.52 |
8.33 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
149881173 |
rs55909843 |
A |
C |
. |
PASS |
0.4856000 |
0.0908000 |
0.0079000 |
0.1282000 |
0.0256000 |
0.1731000 |
36.21 |
70.0 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
149881183 |
rs56351279 |
C |
T |
. |
PASS |
0.4357000 |
0.0893000 |
0.0089000 |
0.1262000 |
0.0245000 |
0.1593000 |
36.21 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
149897966 |
rs72692812 |
T |
G |
. |
PASS |
0.0008000 |
0.0331000 |
0.0010000 |
0.0875000 |
0.0082000 |
0.0242000 |
37.0 |
70.0 |
19 |
198.59 |
30.08 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
149898951 |
rs16836630 |
G |
C |
. |
PASS |
0.1853000 |
0.0476000 |
0.0010000 |
0.0895000 |
0.0082000 |
0.0753000 |
37.0 |
70.0 |
17 |
162.84 |
43.14 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
149900610 |
rs1804775 |
T |
C |
. |
PASS |
0.0091000 |
0.0346000 |
0.0010000 |
0.0905000 |
0.0082000 |
0.0272000 |
37.0 |
70.0 |
13 |
179.03 |
0.00 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
149902588 |
rs72692816 |
A |
G |
. |
PASS |
0.0091000 |
0.0346000 |
0.0010000 |
0.0905000 |
0.0082000 |
0.0272000 |
37.0 |
70.0 |
14 |
50.70 |
42.86 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
149903122 |
rs72692819 |
G |
C |
. |
PASS |
0.0703000 |
0.0375000 |
0.0010000 |
0.0895000 |
0.0082000 |
0.0435000 |
36.14 |
70.0 |
67 |
907.27 |
3.30 |
41.79 |
0 |
41.79 |
0/1 |
| chr1 |
149905279 |
rs72692821 |
G |
A |
. |
PASS |
0.0242000 |
0.2911000 |
0.3403000 |
0.1332000 |
0.1943000 |
0.1799000 |
37.0 |
70.0 |
67 |
726.58 |
0.13 |
34.33 |
0 |
34.33 |
0/1 |
| chr1 |
149908108 |
rs1868992 |
A |
G |
. |
PASS |
0.6914000 |
0.3991000 |
0.3571000 |
0.2594000 |
0.2812000 |
0.4167000 |
36.14 |
70.0 |
61 |
929.48 |
0.47 |
45.90 |
0 |
45.90 |
0/1 |
| chr1 |
149931541 |
rs4926400 |
G |
A |
. |
PASS |
0.0250000 |
0.2939000 |
0.3433000 |
0.1292000 |
0.2495000 |
0.1911000 |
37.0 |
70.0 |
11 |
226.81 |
2.60 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
150027004 |
rs7550323 |
T |
C |
. |
PASS |
0.1989000 |
0.0850000 |
0.0010000 |
0.1700000 |
0.0266000 |
0.1038000 |
37.0 |
69.89 |
13 |
304.34 |
11.97 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
150049934 |
rs72692897 |
A |
G |
. |
PASS |
0.2095000 |
0.0893000 |
0.0010000 |
0.1740000 |
0.0256000 |
0.1078000 |
35.43 |
70.0 |
45 |
756.78 |
10.43 |
51.11 |
0 |
51.11 |
0/1 |
| chr1 |
150049982 |
rs72692898 |
C |
T |
. |
PASS |
0.0023000 |
0.0620000 |
0.0010000 |
0.1690000 |
0.0256000 |
0.0483000 |
37.0 |
70.0 |
17 |
166.99 |
0.00 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
150122493 |
rs4553237 |
T |
C |
. |
PASS |
0.9750000 |
0.9971000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9928000 |
35.7 |
69.46 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150128425 |
rs1545762 |
C |
T |
. |
PASS |
0.3336000 |
0.8790000 |
0.9990000 |
0.8250000 |
0.9744000 |
0.7670000 |
36.38 |
70.0 |
94 |
1000.00 |
5.06 |
61.70 |
0 |
61.70 |
0/1 |
| chr1 |
150129267 |
rs10749675 |
G |
A |
. |
PASS |
0.9266000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9798000 |
36.62 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150129335 |
rs3208509 |
G |
A |
. |
PASS |
0.3676000 |
0.8804000 |
0.9990000 |
0.8241000 |
0.9744000 |
0.7760000 |
37.0 |
70.0 |
10 |
188.06 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
150130982 |
rs143570918 |
G |
GC |
. |
PASS |
0.1324000 |
0.0836000 |
0.0010000 |
0.1650000 |
0.0194000 |
0.0837000 |
36.5 |
70.0 |
60 |
761.82 |
1.67 |
40.00 |
1 |
40.00 |
0/1 |
| chr1 |
150130982 |
rs374923164 |
GG |
GCT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
62 |
728.48 |
0.84 |
37.10 |
1 |
37.10 |
0/1 |
| chr1 |
150130983 |
rs34773647 |
G |
T |
. |
PASS |
0.1324000 |
0.0836000 |
0.0010000 |
0.1650000 |
0.0194000 |
0.0837000 |
36.48 |
70.0 |
61 |
728.48 |
2.85 |
37.70 |
1 |
37.70 |
0/1 |
| chr1 |
150187336 |
rs6680040 |
T |
C |
. |
PASS |
0.5817000 |
0.4380000 |
0.6240000 |
0.4274000 |
0.5061000 |
0.5246000 |
37.0 |
70.0 |
91 |
946.75 |
12.23 |
32.97 |
0 |
32.97 |
0/1 |
| chr1 |
150199123 |
rs7522034 |
G |
T |
. |
PASS |
0.9228000 |
0.4683000 |
0.5456000 |
0.4304000 |
0.4980000 |
0.6020000 |
35.67 |
70.0 |
20 |
267.10 |
16.67 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
150249101 |
rs11205354 |
C |
A |
. |
PASS |
0.8994000 |
0.6859000 |
0.6915000 |
0.4751000 |
0.6176000 |
0.6877000 |
35.4 |
70.0 |
28 |
481.64 |
8.57 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
150258838 |
rs1122967 |
C |
G |
. |
PASS |
0.9667000 |
0.7190000 |
0.7738000 |
0.5497000 |
0.6493000 |
0.7478000 |
36.2 |
70.0 |
28 |
493.65 |
8.57 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
150298192 |
rs11205362 |
G |
A |
. |
PASS |
0.0008000 |
0.0548000 |
0.0010000 |
0.1382000 |
0.0256000 |
0.0407000 |
36.25 |
70.0 |
37 |
512.48 |
11.82 |
43.24 |
0 |
43.24 |
0/1 |
| chr1 |
150300727 |
rs834225 |
T |
C |
. |
PASS |
0.7027000 |
0.4942000 |
0.2817000 |
0.5944000 |
0.3722000 |
0.5028000 |
37.0 |
70.0 |
23 |
925.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150315759 |
. |
G |
GGTATACTAATATCTCTGCCTGACAGTTGACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.75 |
70.0 |
15 |
72.88 |
6.67 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
150337289 |
rs72696841 |
G |
T |
. |
PASS |
0.0008000 |
0.0548000 |
0.0010000 |
0.1382000 |
0.0256000 |
0.0407000 |
36.5 |
70.0 |
104 |
1000.00 |
1.92 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
150415631 |
rs3862206 |
T |
G |
. |
PASS |
0.3616000 |
0.1182000 |
0.0020000 |
0.2078000 |
0.0491000 |
0.1635000 |
37.0 |
70.0 |
16 |
207.61 |
37.50 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
150416913 |
rs16836940 |
A |
G |
. |
PASS |
0.6664000 |
0.2450000 |
0.0585000 |
0.2087000 |
0.0521000 |
0.2738000 |
37.0 |
70.0 |
16 |
462.39 |
8.65 |
81.25 |
0 |
81.25 |
0/1 |
| chr1 |
150429944 |
rs41273537 |
A |
G |
. |
PASS |
0.0008000 |
0.0562000 |
0.0020000 |
0.1372000 |
0.0256000 |
0.0409000 |
36.25 |
70.0 |
77 |
1000.00 |
6.49 |
41.56 |
0 |
41.56 |
0/1 |
| chr1 |
150432802 |
rs12029359 |
G |
A |
. |
PASS |
0.0257000 |
0.1614000 |
0.1796000 |
0.2068000 |
0.1800000 |
0.1420000 |
35.2 |
70.0 |
37 |
655.54 |
3.51 |
54.05 |
0 |
54.05 |
0/1 |
| chr1 |
150437215 |
rs66513313 |
A |
G |
. |
PASS |
0.3623000 |
0.1182000 |
0.0020000 |
0.2068000 |
0.0491000 |
0.1635000 |
36.41 |
70.0 |
70 |
1000.00 |
2.58 |
58.57 |
0 |
58.57 |
0/1 |
| chr1 |
150445819 |
rs7002 |
A |
G |
. |
PASS |
0.0340000 |
0.2536000 |
0.2242000 |
0.3857000 |
0.3221000 |
0.2296000 |
36.56 |
70.0 |
45 |
947.88 |
2.96 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
150463772 |
rs7542068 |
C |
G |
. |
PASS |
0.3623000 |
0.1167000 |
0.0020000 |
0.2068000 |
0.0481000 |
0.1631000 |
37.0 |
70.0 |
10 |
100.36 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
150468842 |
rs1343965 |
A |
G |
. |
PASS |
0.3623000 |
0.1153000 |
0.0020000 |
0.2068000 |
0.0481000 |
0.1629000 |
37.0 |
70.0 |
11 |
268.58 |
13.64 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
150470296 |
rs11588874 |
G |
A |
. |
PASS |
0.3623000 |
0.1153000 |
0.0020000 |
0.2068000 |
0.0481000 |
0.1629000 |
35.5 |
70.0 |
17 |
238.51 |
23.53 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
150470322 |
rs11590324 |
C |
A |
. |
PASS |
0.0915000 |
0.2622000 |
0.2212000 |
0.3837000 |
0.3200000 |
0.2446000 |
37.0 |
70.0 |
11 |
97.35 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
150477061 |
rs3738487 |
C |
T |
. |
PASS |
0.0318000 |
0.2550000 |
0.2212000 |
0.3847000 |
0.2986000 |
0.2238000 |
35.96 |
70.0 |
61 |
1000.00 |
2.64 |
75.41 |
0 |
75.41 |
0/1 |
| chr1 |
150482255 |
rs41264469 |
A |
G |
. |
PASS |
0.0008000 |
0.0648000 |
0.0010000 |
0.1630000 |
0.0327000 |
0.0485000 |
36.64 |
69.39 |
79 |
1000.00 |
10.82 |
41.77 |
0 |
41.77 |
0/1 |
| chr1 |
150482738 |
rs11205387 |
G |
A |
. |
PASS |
0.1831000 |
0.3098000 |
0.2907000 |
0.2594000 |
0.2464000 |
0.2500000 |
37.0 |
70.0 |
29 |
548.56 |
10.78 |
55.17 |
0 |
55.17 |
0/1 |
| chr1 |
150483355 |
rs3737240 |
C |
T |
. |
PASS |
0.0325000 |
0.2493000 |
0.2371000 |
0.3757000 |
0.2945000 |
0.2238000 |
35.91 |
69.55 |
69 |
1000.00 |
0.99 |
63.77 |
0 |
63.77 |
0/1 |
| chr1 |
150483840 |
rs4970979 |
C |
T |
. |
PASS |
0.5741000 |
0.4856000 |
0.2976000 |
0.5934000 |
0.3497000 |
0.4663000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150484395 |
rs149815479 |
ACC |
A |
. |
PASS |
0.6165000 |
0.4928000 |
0.2966000 |
0.5934000 |
0.3497000 |
0.4782000 |
36.41 |
70.0 |
22 |
623.28 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150484987 |
rs13294 |
G |
A |
. |
PASS |
0.1747000 |
0.2709000 |
0.2371000 |
0.3827000 |
0.2986000 |
0.2666000 |
37.0 |
70.0 |
115 |
1000.00 |
8.70 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
150526044 |
rs41317515 |
G |
C |
. |
PASS |
0.6074000 |
0.4337000 |
0.5675000 |
0.5338000 |
0.4427000 |
0.5284000 |
36.71 |
70.0 |
64 |
1000.00 |
0.30 |
64.06 |
0 |
64.06 |
0/1 |
| chr1 |
150526406 |
rs6681639 |
C |
T |
. |
PASS |
0.5832000 |
0.2666000 |
0.3056000 |
0.2853000 |
0.1922000 |
0.3472000 |
36.2 |
70.0 |
89 |
1000.00 |
3.35 |
50.56 |
0 |
50.56 |
0/1 |
| chr1 |
150528090 |
rs146160043 |
G |
GACAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
70.0 |
57 |
929.95 |
4.89 |
49.12 |
0 |
49.12 |
0/1 |
| chr1 |
150528118 |
rs149100901 |
T |
TACAC |
. |
PASS |
0.5242000 |
0.7378000 |
0.8363000 |
0.6292000 |
0.7873000 |
0.6891000 |
36.75 |
70.0 |
29 |
397.67 |
9.02 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
150529322 |
rs34379037 |
T |
TAA |
. |
PASS |
0.8759000 |
0.9697000 |
0.9990000 |
0.9523000 |
0.9622000 |
0.9459000 |
36.38 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150531008 |
rs10888382 |
T |
C |
. |
PASS |
0.6475000 |
0.9049000 |
0.8373000 |
0.9314000 |
0.8323000 |
0.8145000 |
36.5 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150531050 |
rs10749657 |
G |
A |
. |
PASS |
0.8290000 |
0.8444000 |
0.9831000 |
0.8390000 |
0.9018000 |
0.8784000 |
36.3 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150531170 |
rs10749658 |
C |
T |
. |
PASS |
0.7133000 |
0.9841000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9215000 |
36.86 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150531380 |
rs11204664 |
T |
C |
. |
PASS |
0.4304000 |
0.4481000 |
0.6915000 |
0.5855000 |
0.4693000 |
0.5242000 |
35.76 |
69.31 |
51 |
989.33 |
1.35 |
56.86 |
0 |
56.86 |
0/1 |
| chr1 |
150532376 |
rs56411234 |
G |
A |
. |
PASS |
0.0015000 |
0.0101000 |
0.0000000 |
0.0278000 |
0.0010000 |
0.0075879 |
36.76 |
69.6 |
85 |
1000.00 |
0.94 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
150536180 |
rs111358816 |
C |
CAAG |
. |
PASS |
0.4637000 |
0.5029000 |
0.5248000 |
0.5736000 |
0.3763000 |
0.4864000 |
36.4 |
69.57 |
72 |
1000.00 |
3.00 |
68.06 |
0 |
68.06 |
0/1 |
| chr1 |
150552042 |
rs16837903 |
G |
A |
. |
PASS |
0.0068000 |
0.1052000 |
0.0248000 |
0.1461000 |
0.0491000 |
0.0603000 |
37.0 |
70.0 |
19 |
286.27 |
7.02 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
150671243 |
rs139837908 |
AC |
A |
. |
PASS |
0.2852000 |
0.4597000 |
0.3581000 |
0.4314000 |
0.5695000 |
0.4089000 |
35.38 |
70.0 |
20 |
218.92 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
150679033 |
rs1336900 |
G |
A |
. |
PASS |
0.2269000 |
0.4467000 |
0.3571000 |
0.4095000 |
0.5613000 |
0.3856000 |
36.4 |
70.0 |
40 |
670.53 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
150679358 |
rs11586422 |
C |
T |
. |
PASS |
0.2859000 |
0.4597000 |
0.3581000 |
0.4314000 |
0.5695000 |
0.4091000 |
35.5 |
70.0 |
17 |
238.52 |
22.06 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
150686633 |
rs34593358 |
A |
T |
. |
PASS |
0.0809000 |
0.2003000 |
0.1885000 |
0.2416000 |
0.1350000 |
0.1619000 |
37.0 |
68.82 |
27 |
592.21 |
0.44 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
150727539 |
rs2230061 |
G |
A |
. |
PASS |
0.2610000 |
0.4366000 |
0.3532000 |
0.3698000 |
0.5511000 |
0.3824000 |
37.0 |
70.0 |
69 |
1000.00 |
5.25 |
46.38 |
0 |
46.38 |
0/1 |
| chr1 |
150730279 |
rs2275235 |
A |
G |
. |
PASS |
0.2587000 |
0.4380000 |
0.4058000 |
0.3718000 |
0.5532000 |
0.3934000 |
37.0 |
70.0 |
35 |
446.96 |
14.29 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
150771703 |
rs10788796 |
T |
C |
. |
PASS |
0.8986000 |
0.9870000 |
0.9931000 |
0.9980000 |
0.9673000 |
0.9633000 |
36.03 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150789961 |
rs3894771 |
A |
T |
. |
PASS |
0.6082000 |
0.4597000 |
0.5050000 |
0.4264000 |
0.5245000 |
0.5140000 |
37.0 |
70.0 |
16 |
207.62 |
1.79 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
150808889 |
rs2228099 |
C |
G |
. |
PASS |
0.5174000 |
0.4625000 |
0.4018000 |
0.3926000 |
0.5665000 |
0.4710000 |
36.22 |
70.0 |
103 |
1000.00 |
7.18 |
44.66 |
0 |
44.66 |
0/1 |
| chr1 |
150849071 |
rs34415707 |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.94 |
70.0 |
140 |
1000.00 |
1.87 |
92.14 |
0 |
92.14 |
0/1 |
| chr1 |
150916657 |
rs2271076 |
C |
T |
. |
PASS |
0.5825000 |
0.5476000 |
0.4355000 |
0.3897000 |
0.5235000 |
0.4978000 |
36.45 |
70.0 |
78 |
1000.00 |
7.93 |
56.41 |
0 |
56.41 |
0/1 |
| chr1 |
150938571 |
rs8444 |
G |
A |
. |
PASS |
0.2693000 |
0.5144000 |
0.4345000 |
0.3668000 |
0.5153000 |
0.4042000 |
34.33 |
70.0 |
40 |
550.96 |
15.00 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
150938616 |
rs267739 |
G |
A |
. |
PASS |
0.9251000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9792000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150939744 |
rs11204750 |
C |
A |
. |
PASS |
0.2194000 |
0.5130000 |
0.4345000 |
0.3688000 |
0.5153000 |
0.3912000 |
37.0 |
70.0 |
27 |
299.82 |
21.48 |
37.04 |
0 |
37.04 |
0/1 |
| chr1 |
150940356 |
. |
GGC |
GTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.71 |
70.0 |
76 |
839.58 |
0.75 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
150941381 |
rs752376 |
C |
T |
. |
PASS |
0.5817000 |
0.5476000 |
0.4355000 |
0.3897000 |
0.5225000 |
0.4974000 |
36.44 |
70.0 |
91 |
1000.00 |
3.17 |
47.25 |
0 |
47.25 |
0/1 |
| chr1 |
150958977 |
rs2305814 |
T |
C |
. |
PASS |
0.5182000 |
0.6095000 |
0.5883000 |
0.4453000 |
0.6237000 |
0.5509000 |
37.0 |
70.0 |
35 |
655.82 |
5.41 |
54.29 |
0 |
54.29 |
0/1 |
| chr1 |
150960350 |
rs7532008 |
A |
C |
. |
PASS |
0.5106000 |
0.4092000 |
0.5813000 |
0.3429000 |
0.5859000 |
0.4918000 |
37.0 |
70.0 |
41 |
424.75 |
16.03 |
34.15 |
0 |
34.15 |
0/1 |
| chr1 |
150969992 |
rs2925740 |
T |
C |
. |
PASS |
0.6641000 |
0.9524000 |
1.0000000 |
0.9344000 |
0.9939000 |
0.8904000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150970577 |
rs2925741 |
G |
T |
. |
PASS |
0.7943000 |
0.9856000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9433000 |
36.02 |
69.67 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150972538 |
rs708909 |
G |
A |
. |
PASS |
0.8457000 |
0.9870000 |
1.0000000 |
0.9980000 |
0.9980000 |
0.9567000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150974162 |
rs771204 |
G |
A |
. |
PASS |
0.7254000 |
0.8833000 |
0.8413000 |
0.8300000 |
0.8834000 |
0.8225000 |
37.0 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150975108 |
rs771205 |
T |
C |
. |
PASS |
0.3192000 |
0.9424000 |
0.8492000 |
0.9692000 |
0.9141000 |
0.7590000 |
36.56 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150990466 |
rs71090118 |
C |
CAT |
. |
PASS |
0.1316000 |
0.4236000 |
0.4236000 |
0.5517000 |
0.5900000 |
0.4048000 |
36.28 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
150999863 |
rs55717234 |
A |
G |
. |
PASS |
0.4592000 |
0.3963000 |
0.2629000 |
0.5686000 |
0.7055000 |
0.4810000 |
36.27 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151006539 |
rs3738476 |
C |
A |
. |
PASS |
0.4387000 |
0.5187000 |
0.5952000 |
0.5030000 |
0.5164000 |
0.5094000 |
36.59 |
69.97 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151010934 |
rs12119096 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0003994 |
37.0 |
70.0 |
15 |
465.39 |
8.21 |
86.67 |
0 |
86.67 |
0/1 |
| chr1 |
151019180 |
rs6587553 |
A |
G |
. |
PASS |
0.7118000 |
0.8228000 |
0.9077000 |
0.8111000 |
0.8395000 |
0.8115000 |
37.0 |
70.0 |
66 |
1000.00 |
12.12 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
151026815 |
rs2902810 |
C |
T |
. |
PASS |
0.6884000 |
0.8098000 |
0.9058000 |
0.8062000 |
0.8384000 |
0.8019000 |
36.25 |
70.0 |
34 |
521.51 |
13.97 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
151028234 |
rs11204767 |
G |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.41 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151104950 |
rs10788800 |
G |
A |
. |
PASS |
0.2103000 |
0.7334000 |
0.8770000 |
0.7237000 |
0.7321000 |
0.6220000 |
36.57 |
70.0 |
58 |
950.51 |
3.45 |
48.28 |
0 |
48.28 |
0/1 |
| chr1 |
151105076 |
rs75585997 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
35.8 |
70.0 |
73 |
964.88 |
11.96 |
41.10 |
0 |
41.10 |
0/1 |
| chr1 |
151105824 |
rs4971006 |
C |
G |
. |
PASS |
0.5371000 |
0.7939000 |
0.9028000 |
0.8121000 |
0.8272000 |
0.7582000 |
37.0 |
70.0 |
80 |
1000.00 |
3.61 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
151108137 |
rs4971007 |
T |
G |
. |
PASS |
0.7632000 |
0.8084000 |
0.9048000 |
0.8201000 |
0.8354000 |
0.8235000 |
36.66 |
70.0 |
65 |
1000.00 |
5.27 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
151110832 |
rs72708441 |
G |
A |
. |
PASS |
0.0038000 |
0.0490000 |
0.0000000 |
0.0805000 |
0.0123000 |
0.0264000 |
37.0 |
69.35 |
82 |
1000.00 |
8.65 |
37.80 |
0 |
37.80 |
0/1 |
| chr1 |
151146186 |
rs7552226 |
C |
G |
. |
PASS |
0.8480000 |
0.9841000 |
0.9286000 |
0.9861000 |
0.9192000 |
0.9247000 |
37.0 |
70.0 |
22 |
879.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151149601 |
rs6656261 |
A |
G |
. |
PASS |
0.9168000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9774000 |
36.67 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151209063 |
rs12407426 |
C |
T |
. |
PASS |
0.6657000 |
0.6138000 |
0.6121000 |
0.7008000 |
0.5971000 |
0.6414000 |
36.74 |
67.48 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151210789 |
rs7532935 |
C |
T |
. |
PASS |
0.5053000 |
0.6023000 |
0.6121000 |
0.6958000 |
0.5879000 |
0.5946000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151212399 |
rs141190258,rs59256423 |
C |
CCTT |
. |
PASS |
0.8359000 |
0.7968000 |
0.6736000 |
0.8817000 |
0.6963000 |
0.7798000 |
36.33 |
70.0 |
31 |
1000.00 |
2.15 |
96.77 |
0 |
100.00 |
1/1 |
| chr1 |
151227371 |
rs3811405 |
A |
G |
. |
PASS |
0.8374000 |
0.7680000 |
0.6766000 |
0.8280000 |
0.6718000 |
0.7612000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151237589 |
rs3216063 |
TC |
T |
. |
PASS |
0.6649000 |
0.6182000 |
0.6121000 |
0.7048000 |
0.5982000 |
0.6428000 |
36.38 |
70.0 |
21 |
819.12 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151239051 |
rs7489 |
T |
C |
. |
PASS |
0.6384000 |
0.6167000 |
0.6121000 |
0.7048000 |
0.5971000 |
0.6354000 |
36.48 |
69.96 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151263677 |
rs145032688 |
G |
GACA |
. |
PASS |
0.0023000 |
0.0144000 |
0.0000000 |
0.0547000 |
0.0143000 |
0.0163740 |
36.68 |
70.0 |
138 |
1000.00 |
6.45 |
44.93 |
0 |
44.93 |
0/1 |
| chr1 |
151263782 |
rs10788803 |
A |
G |
. |
PASS |
0.4546000 |
0.5937000 |
0.6200000 |
0.6352000 |
0.5930000 |
0.5705000 |
36.66 |
69.81 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151288172 |
rs1056847 |
G |
A |
. |
PASS |
0.2693000 |
0.5735000 |
0.5764000 |
0.6342000 |
0.5920000 |
0.5096000 |
36.1 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151288391 |
rs1752379 |
A |
G |
. |
PASS |
0.9198000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9782000 |
36.5 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151316161 |
rs1752386 |
G |
A |
. |
PASS |
0.9191000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9780000 |
36.87 |
70.0 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151337703 |
rs72710112 |
C |
T |
. |
PASS |
0.0166000 |
0.0086000 |
0.0000000 |
0.0169000 |
0.0061000 |
0.0101840 |
36.41 |
69.51 |
98 |
1000.00 |
1.19 |
41.84 |
0 |
41.84 |
0/1 |
| chr1 |
151337788 |
rs10788804 |
A |
G |
. |
PASS |
0.2352000 |
0.5576000 |
0.5863000 |
0.6173000 |
0.6503000 |
0.5084000 |
36.38 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151340830 |
rs72710113 |
A |
G |
. |
PASS |
0.0091000 |
0.0115000 |
0.0010000 |
0.0249000 |
0.0041000 |
0.0099840 |
37.0 |
70.0 |
32 |
497.77 |
15.42 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
151341728 |
rs35093538 |
G |
GC |
. |
PASS |
0.6846000 |
0.6412000 |
0.2956000 |
0.5278000 |
0.3037000 |
0.4944000 |
37.0 |
70.0 |
17 |
402.01 |
13.73 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
151372138 |
rs7172 |
G |
A |
. |
PASS |
0.3321000 |
0.4669000 |
0.2123000 |
0.8350000 |
0.6667000 |
0.4930000 |
36.52 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151372770 |
rs2495390 |
A |
G |
. |
PASS |
0.9183000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9780000 |
35.91 |
70.0 |
22 |
859.44 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151373200 |
rs2495391 |
T |
C |
. |
PASS |
0.9100000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9758000 |
35.62 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151377248 |
rs6667714 |
T |
C |
. |
PASS |
0.9100000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9758000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151379250 |
rs2274535 |
G |
A |
. |
PASS |
0.3328000 |
0.4654000 |
0.2093000 |
0.8350000 |
0.6646000 |
0.4920000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151380505 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.06 |
70.0 |
17 |
551.39 |
2.21 |
94.12 |
1 |
94.12 |
1/1 |
| chr1 |
151380505 |
. |
AAAG |
AAAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
19 |
551.39 |
52.63 |
5.26 |
1 |
100.00 |
0/1 |
| chr1 |
151380505 |
. |
AAAG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.94 |
70.0 |
19 |
551.39 |
2.92 |
94.74 |
1 |
100.00 |
0/1 |
| chr1 |
151380506 |
rs57279505 |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.06 |
70.0 |
17 |
551.39 |
2.21 |
94.12 |
1 |
94.12 |
1/1 |
| chr1 |
151380507 |
rs148187584 |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.18 |
70.0 |
17 |
592.26 |
2.21 |
94.12 |
1 |
100.00 |
1/1 |
| chr1 |
151381320 |
rs3831142 |
GA |
G |
. |
PASS |
0.3313000 |
0.4654000 |
0.2113000 |
0.8350000 |
0.6646000 |
0.4920000 |
36.44 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151384733 |
rs3748550 |
G |
A |
. |
PASS |
0.8449000 |
0.6960000 |
0.6825000 |
0.8539000 |
0.7975000 |
0.7841000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151395782 |
rs2274533 |
T |
C |
. |
PASS |
0.5560000 |
0.4769000 |
0.2113000 |
0.8320000 |
0.6656000 |
0.5525000 |
35.0 |
70.0 |
12 |
441.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151396037 |
rs2274534 |
A |
C |
. |
PASS |
0.3268000 |
0.4640000 |
0.2113000 |
0.8350000 |
0.6656000 |
0.4908000 |
36.12 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151400942 |
rs11204811 |
A |
C |
. |
PASS |
0.3729000 |
0.4683000 |
0.2113000 |
0.8350000 |
0.6636000 |
0.5032000 |
36.82 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151402045 |
rs6587577 |
A |
G |
. |
PASS |
0.7534000 |
0.6902000 |
0.6825000 |
0.8539000 |
0.7965000 |
0.7590000 |
36.32 |
69.62 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151403380 |
rs145138089,rs71795199,rs74263412,rs71903837 |
CTTTAT |
C |
. |
PASS |
0.5877000 |
0.7666000 |
0.5764000 |
0.9284000 |
0.8579000 |
0.7314000 |
35.73 |
70.0 |
16 |
481.78 |
3.33 |
93.75 |
0 |
93.75 |
1/1 |
| chr1 |
151497140 |
rs1573130 |
T |
C |
. |
PASS |
0.5424000 |
0.4150000 |
0.8115000 |
0.1750000 |
0.3384000 |
0.4653000 |
37.0 |
70.0 |
32 |
957.24 |
9.62 |
81.25 |
0 |
81.25 |
0/1 |
| chr1 |
151497376 |
rs1573129 |
G |
A |
. |
PASS |
0.1672000 |
0.4035000 |
0.7927000 |
0.1720000 |
0.3364000 |
0.3598000 |
35.71 |
70.0 |
61 |
917.48 |
6.67 |
45.90 |
0 |
45.90 |
0/1 |
| chr1 |
151499635 |
rs2298168 |
C |
T |
. |
PASS |
0.3457000 |
0.5720000 |
0.1885000 |
0.8250000 |
0.6472000 |
0.5006000 |
37.0 |
70.0 |
32 |
706.62 |
16.25 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
151512802 |
rs16833376 |
G |
T |
. |
PASS |
0.0340000 |
0.1110000 |
0.0466000 |
0.2555000 |
0.1534000 |
0.1150000 |
36.05 |
70.0 |
52 |
1000.00 |
8.84 |
71.15 |
0 |
73.08 |
0/1 |
| chr1 |
151529918 |
rs11204848 |
C |
T |
. |
PASS |
0.1657000 |
0.5101000 |
0.6290000 |
0.3469000 |
0.2986000 |
0.3690000 |
35.91 |
69.91 |
21 |
351.79 |
24.24 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
151534142 |
rs4132646 |
A |
C |
. |
PASS |
0.1664000 |
0.5115000 |
0.6300000 |
0.3499000 |
0.2986000 |
0.3702000 |
36.56 |
70.0 |
54 |
916.64 |
3.70 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
151538784 |
rs57179871,rs140188723 |
T |
TTC |
. |
PASS |
0.0408000 |
0.3674000 |
0.3690000 |
0.0845000 |
0.2526000 |
0.2023000 |
36.14 |
70.0 |
31 |
179.78 |
45.97 |
25.81 |
0 |
25.81 |
0/1 |
| chr1 |
151546931 |
rs6660238 |
A |
G |
. |
PASS |
0.8548000 |
0.8184000 |
0.9296000 |
0.9076000 |
0.9836000 |
0.9006000 |
37.0 |
70.0 |
16 |
211.76 |
7.14 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
151551320 |
rs3748608 |
G |
A |
. |
PASS |
0.2791000 |
0.5461000 |
0.4187000 |
0.6720000 |
0.4663000 |
0.4597000 |
37.0 |
69.29 |
76 |
908.34 |
0.75 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
151552301 |
rs3833527 |
TG |
T |
. |
PASS |
0.2799000 |
0.5461000 |
0.4187000 |
0.6720000 |
0.4673000 |
0.4601000 |
37.0 |
70.0 |
26 |
380.95 |
12.82 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
151588735 |
rs12122920 |
G |
A |
. |
PASS |
0.0219000 |
0.4092000 |
0.1974000 |
0.5616000 |
0.3292000 |
0.2794000 |
34.6 |
70.0 |
20 |
751.87 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151588815 |
rs1196357 |
A |
G |
. |
PASS |
0.3177000 |
0.4870000 |
0.3681000 |
0.6650000 |
0.4601000 |
0.4489000 |
35.41 |
69.71 |
68 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151634803 |
rs11808761 |
G |
A |
. |
PASS |
0.0212000 |
0.3977000 |
0.1974000 |
0.5268000 |
0.3262000 |
0.2700000 |
37.0 |
70.0 |
20 |
758.16 |
8.95 |
95.00 |
0 |
100.00 |
1/1 |
| chr1 |
151700189 |
rs72506285 |
C |
CCTG |
. |
PASS |
0.8979000 |
0.8833000 |
0.8601000 |
0.8628000 |
0.8742000 |
0.8766000 |
36.69 |
70.0 |
12 |
437.17 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151740479 |
rs1196457 |
C |
A |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
36.25 |
70.0 |
16 |
616.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151740666 |
rs2495397 |
T |
C |
. |
PASS |
0.9985000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9996000 |
36.88 |
70.0 |
101 |
1000.00 |
1.13 |
99.01 |
0 |
100.00 |
1/1 |
| chr1 |
151747043 |
rs1123855 |
C |
T |
. |
PASS |
0.2201000 |
0.2695000 |
0.1984000 |
0.5139000 |
0.4121000 |
0.3191000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151747733 |
rs1781421 |
C |
T |
. |
PASS |
0.2201000 |
0.2709000 |
0.1786000 |
0.5139000 |
0.4100000 |
0.3149000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151747799 |
rs1781419 |
G |
A |
. |
PASS |
0.7284000 |
0.6513000 |
0.6954000 |
0.6581000 |
0.7812000 |
0.7073000 |
36.74 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151748425 |
rs3923394 |
C |
A |
. |
PASS |
0.6074000 |
0.4251000 |
0.3194000 |
0.6531000 |
0.5235000 |
0.5170000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151750963 |
rs1996730 |
C |
T |
. |
PASS |
0.9985000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9996000 |
36.29 |
69.9 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151751081 |
rs1996729 |
G |
A |
. |
PASS |
0.2247000 |
0.2709000 |
0.1984000 |
0.5139000 |
0.4131000 |
0.3207000 |
36.08 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151754112 |
rs35077383 |
T |
C |
. |
PASS |
0.2216000 |
0.2752000 |
0.1994000 |
0.5149000 |
0.4121000 |
0.3207000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151780177 |
rs3828057 |
C |
T |
. |
PASS |
0.2110000 |
0.2334000 |
0.1716000 |
0.4364000 |
0.3834000 |
0.2851000 |
35.4 |
70.0 |
22 |
503.85 |
3.03 |
68.18 |
0 |
68.18 |
0/1 |
| chr1 |
151789588 |
rs151171878 |
C |
CTGTGTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
70.0 |
19 |
718.55 |
3.01 |
36.84 |
0 |
100.00 |
0/1 |
| chr1 |
151789588 |
rs151171878 |
C |
CTGTGTGTG |
. |
PASS |
0.2163000 |
0.4524000 |
0.4504000 |
0.4602000 |
0.4479000 |
0.3904000 |
36.38 |
70.0 |
19 |
718.55 |
12.87 |
47.37 |
0 |
100.00 |
0/1 |
| chr1 |
151789609 |
rs56273334 |
C |
T |
. |
PASS |
0.8578000 |
0.9885000 |
0.9990000 |
0.9970000 |
0.9990000 |
0.9599000 |
35.75 |
70.0 |
24 |
859.44 |
4.55 |
91.67 |
0 |
100.00 |
1/1 |
| chr1 |
151789611 |
rs55841824 |
C |
T |
. |
PASS |
0.7020000 |
0.6340000 |
0.8472000 |
0.8767000 |
0.8476000 |
0.7853000 |
35.62 |
70.0 |
27 |
339.74 |
4.71 |
40.74 |
0 |
48.15 |
0/1 |
| chr1 |
151789647 |
rs12144914 |
T |
G |
. |
PASS |
0.2670000 |
0.2781000 |
0.4702000 |
0.5507000 |
0.4294000 |
0.3982000 |
36.11 |
70.0 |
49 |
919.67 |
9.07 |
55.10 |
0 |
55.10 |
0/1 |
| chr1 |
151801951 |
rs4845606 |
G |
A |
. |
PASS |
0.1354000 |
0.2320000 |
0.1488000 |
0.1183000 |
0.1350000 |
0.1480000 |
34.18 |
70.0 |
53 |
470.06 |
8.66 |
32.08 |
0 |
32.08 |
0/1 |
| chr1 |
151809254 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
10 |
172.49 |
26.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
151810304 |
rs12122596 |
G |
C |
. |
PASS |
0.4818000 |
0.5331000 |
0.3750000 |
0.4980000 |
0.6943000 |
0.5122000 |
37.0 |
70.0 |
14 |
213.64 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
151811226 |
rs6673556 |
G |
A |
. |
PASS |
0.7496000 |
0.9841000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9317000 |
36.67 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151819738 |
. |
G |
GGGAGGCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.87 |
70.0 |
15 |
369.01 |
7.27 |
73.33 |
0 |
80.00 |
0/1 |
| chr1 |
151820298 |
rs6587624 |
G |
C |
. |
PASS |
0.9879000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9966000 |
36.09 |
69.78 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151820324 |
rs6587625 |
T |
C |
. |
PASS |
0.8752000 |
0.8674000 |
0.6815000 |
0.8330000 |
0.6258000 |
0.7780000 |
36.85 |
69.75 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151825991 |
rs7556386 |
G |
T |
. |
PASS |
0.7421000 |
0.5620000 |
0.6567000 |
0.6859000 |
0.4243000 |
0.6266000 |
37.0 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151867560 |
rs3762427 |
G |
A |
. |
PASS |
0.9047000 |
0.9092000 |
0.9504000 |
0.9175000 |
0.9356000 |
0.9231000 |
36.24 |
68.3 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151881885 |
rs3748805 |
A |
C |
. |
PASS |
0.8986000 |
0.9092000 |
0.9494000 |
0.9155000 |
0.9458000 |
0.9229000 |
36.39 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
151952885 |
rs2999528 |
C |
T |
. |
PASS |
0.3669000 |
0.6844000 |
0.6458000 |
0.5994000 |
0.3671000 |
0.5138000 |
36.74 |
70.0 |
78 |
1000.00 |
1.56 |
58.97 |
0 |
58.97 |
0/1 |
| chr1 |
152005327 |
rs35135981 |
TA |
T |
. |
PASS |
0.3654000 |
0.1470000 |
0.0010000 |
0.2634000 |
0.1268000 |
0.1947000 |
36.2 |
70.0 |
32 |
476.21 |
9.17 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
152009530 |
rs3811422 |
T |
C |
. |
PASS |
0.7179000 |
0.9380000 |
0.8938000 |
0.9672000 |
0.9325000 |
0.8758000 |
36.0 |
70.0 |
24 |
942.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152079823 |
rs1131473 |
C |
G |
. |
PASS |
0.2806000 |
0.5850000 |
0.4960000 |
0.3688000 |
0.7229000 |
0.4702000 |
37.0 |
70.0 |
45 |
788.65 |
6.96 |
51.11 |
0 |
51.11 |
0/1 |
| chr1 |
152079989 |
rs1131471 |
T |
G |
. |
PASS |
0.5136000 |
0.6484000 |
0.5992000 |
0.4016000 |
0.7751000 |
0.5781000 |
37.0 |
70.0 |
80 |
1000.00 |
12.44 |
48.75 |
0 |
48.75 |
0/1 |
| chr1 |
152081921 |
rs2496253 |
G |
C |
. |
PASS |
0.4781000 |
0.6470000 |
0.5992000 |
0.4016000 |
0.7751000 |
0.5685000 |
35.67 |
70.0 |
53 |
895.63 |
13.14 |
50.94 |
0 |
50.94 |
0/1 |
| chr1 |
152083325 |
rs11803731 |
A |
T |
. |
PASS |
0.0045000 |
0.0937000 |
0.0010000 |
0.2286000 |
0.0634000 |
0.0727000 |
36.12 |
69.51 |
92 |
1000.00 |
14.32 |
44.57 |
0 |
44.57 |
0/1 |
| chr1 |
152084039 |
rs6680692 |
G |
T |
. |
PASS |
0.0015000 |
0.0072000 |
0.0020000 |
0.0209000 |
0.0000000 |
0.0055910 |
35.31 |
70.0 |
151 |
1000.00 |
4.57 |
47.02 |
0 |
47.02 |
0/1 |
| chr1 |
152085505 |
rs2515663 |
A |
C |
. |
PASS |
0.9614000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9892000 |
36.45 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152128121 |
rs72696940 |
G |
A |
. |
PASS |
0.0023000 |
0.0735000 |
0.0040000 |
0.1233000 |
0.0777000 |
0.0515000 |
36.52 |
69.67 |
263 |
1000.00 |
14.80 |
47.15 |
0 |
47.15 |
0/1 |
| chr1 |
152185500 |
rs12726613 |
C |
G |
. |
PASS |
0.2428000 |
0.4265000 |
0.6190000 |
0.1700000 |
0.4888000 |
0.3774000 |
34.82 |
70.0 |
17 |
347.67 |
17.11 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
152185750 |
rs12729662 |
G |
A |
. |
PASS |
0.1172000 |
0.4150000 |
0.6181000 |
0.1700000 |
0.4898000 |
0.3427000 |
36.67 |
69.98 |
137 |
1000.00 |
5.44 |
80.29 |
0 |
80.29 |
0/1 |
| chr1 |
152185762 |
rs41266112 |
C |
G |
. |
PASS |
0.5287000 |
0.5576000 |
0.3859000 |
0.8300000 |
0.5112000 |
0.5611000 |
35.59 |
69.76 |
136 |
240.11 |
45.59 |
12.50 |
0 |
12.50 |
0/1 |
| chr1 |
152185768 |
rs41266114 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.73 |
137 |
177.59 |
44.28 |
10.95 |
0 |
10.95 |
0/1 |
| chr1 |
152186099 |
rs144801487 |
C |
T |
. |
PASS |
0.0038000 |
0.0159000 |
0.0020000 |
0.0537000 |
0.0072000 |
0.0157750 |
36.0 |
57.77 |
67 |
1000.00 |
21.77 |
71.64 |
0 |
71.64 |
0/1 |
| chr1 |
152186141 |
rs41266128 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
54.69 |
83 |
917.03 |
41.21 |
34.94 |
0 |
34.94 |
0/1 |
| chr1 |
152186178 |
rs4845748 |
C |
T |
. |
PASS |
0.3306000 |
0.3429000 |
0.3125000 |
0.6342000 |
0.4008000 |
0.4034000 |
36.4 |
52.75 |
91 |
517.03 |
54.51 |
21.98 |
0 |
21.98 |
0/1 |
| chr1 |
152186222 |
rs4845424 |
T |
C |
. |
PASS |
0.2685000 |
0.3285000 |
0.2569000 |
0.6561000 |
0.3057000 |
0.3596000 |
35.5 |
50.62 |
68 |
85.02 |
57.35 |
11.76 |
0 |
11.76 |
0/1 |
| chr1 |
152186490 |
rs201463788 |
C |
T |
. |
PASS |
0.1203000 |
0.2147000 |
0.2679000 |
0.0934000 |
0.2209000 |
0.1773000 |
35.5 |
58.0 |
30 |
199.39 |
13.33 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
152186699 |
. |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.66 |
48.3 |
664 |
864.79 |
22.55 |
10.54 |
0 |
10.54 |
0/1 |
| chr1 |
152186766 |
rs4845747 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
48.35 |
732 |
1000.00 |
14.99 |
21.86 |
0 |
21.99 |
0/1 |
| chr1 |
152187183 |
rs138393387 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
61.38 |
374 |
1000.00 |
3.89 |
26.74 |
0 |
26.74 |
0/1 |
| chr1 |
152187276 |
rs199952550 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.64 |
82 |
180.20 |
1.33 |
13.41 |
0 |
13.41 |
0/1 |
| chr1 |
152187554 |
rs61814935 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
50.86 |
465 |
1000.00 |
16.70 |
18.71 |
0 |
18.71 |
0/1 |
| chr1 |
152187562 |
rs61814936 |
A |
C |
. |
PASS |
0.8570000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9607000 |
36.68 |
49.07 |
456 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152187589 |
rs143684430 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.18 |
43.71 |
702 |
1000.00 |
11.30 |
18.66 |
0 |
18.66 |
0/1 |
| chr1 |
152187628 |
rs75639578 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
46.13 |
1036 |
1000.00 |
10.36 |
15.93 |
0 |
15.93 |
0/1 |
| chr1 |
152187810 |
rs145371085 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.84 |
65.97 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152187935 |
rs61814938 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
53.89 |
145 |
1000.00 |
28.75 |
26.21 |
0 |
26.21 |
0/1 |
| chr1 |
152187945 |
rs61814939 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.79 |
54.7 |
163 |
1000.00 |
19.26 |
34.36 |
0 |
34.36 |
0/1 |
| chr1 |
152188062 |
rs79940627 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
56.46 |
332 |
1000.00 |
8.11 |
20.78 |
0 |
20.78 |
0/1 |
| chr1 |
152188109 |
rs61814940 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
57.06 |
378 |
1000.00 |
29.63 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
152188176 |
rs147618491 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.85 |
60.84 |
514 |
1000.00 |
12.92 |
15.76 |
0 |
15.76 |
0/1 |
| chr1 |
152188413 |
rs200760332 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.82 |
66.6 |
645 |
812.75 |
6.15 |
10.39 |
0 |
10.39 |
0/1 |
| chr1 |
152188463 |
rs61814941 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.44 |
63.23 |
579 |
862.07 |
15.80 |
11.05 |
0 |
11.05 |
0/1 |
| chr1 |
152188847 |
rs145667921 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.59 |
42.55 |
166 |
667.22 |
22.85 |
17.47 |
0 |
17.47 |
0/1 |
| chr1 |
152188920 |
rs61814942 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.75 |
45.7 |
339 |
1000.00 |
0.57 |
28.32 |
0 |
28.32 |
0/1 |
| chr1 |
152188998 |
rs80018286 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
51.74 |
270 |
718.11 |
23.74 |
14.07 |
0 |
14.07 |
0/1 |
| chr1 |
152189055 |
rs4845749 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.76 |
53.84 |
99 |
1000.00 |
0.41 |
98.99 |
0 |
100.00 |
1/1 |
| chr1 |
152190682 |
rs71625163 |
G |
A |
. |
PASS |
0.1778000 |
0.4222000 |
0.6558000 |
0.1700000 |
0.4928000 |
0.3678000 |
37.0 |
23.0 |
13 |
95.48 |
0.00 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
152190720 |
rs7514457 |
C |
T |
. |
PASS |
0.5166000 |
0.5432000 |
0.3423000 |
0.8062000 |
0.5061000 |
0.5413000 |
37.0 |
69.93 |
21 |
489.10 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
152190835 |
rs144383071 |
G |
A |
. |
PASS |
0.0242000 |
0.3919000 |
0.6319000 |
0.1412000 |
0.4305000 |
0.3003000 |
36.76 |
54.54 |
115 |
1000.00 |
8.70 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
152190945 |
rs77376932 |
C |
T |
. |
PASS |
0.0242000 |
0.3905000 |
0.6190000 |
0.1402000 |
0.4243000 |
0.2961000 |
36.88 |
64.96 |
213 |
1000.00 |
0.79 |
45.07 |
0 |
45.07 |
0/1 |
| chr1 |
152191709 |
rs6662450 |
C |
G |
. |
PASS |
0.4682000 |
0.5519000 |
0.3274000 |
0.8290000 |
0.5082000 |
0.5317000 |
36.29 |
70.0 |
153 |
1000.00 |
8.82 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
152191879 |
rs10788828 |
G |
A |
. |
PASS |
0.5280000 |
0.5576000 |
0.3800000 |
0.8300000 |
0.5133000 |
0.5601000 |
35.88 |
69.95 |
108 |
1000.00 |
7.88 |
39.81 |
0 |
39.81 |
0/1 |
| chr1 |
152192114 |
rs7520249 |
C |
T |
. |
PASS |
0.5280000 |
0.5576000 |
0.3800000 |
0.8300000 |
0.5102000 |
0.5595000 |
36.58 |
69.71 |
224 |
1000.00 |
3.86 |
37.95 |
0 |
37.95 |
0/1 |
| chr1 |
152192219 |
rs79513582 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
68.36 |
125 |
159.93 |
27.77 |
11.20 |
0 |
11.20 |
0/1 |
| chr1 |
152192293 |
rs7520375 |
C |
T |
. |
PASS |
0.5272000 |
0.5576000 |
0.3313000 |
0.8300000 |
0.5082000 |
0.5491000 |
36.14 |
65.5 |
145 |
1000.00 |
1.26 |
38.62 |
0 |
38.62 |
0/1 |
| chr1 |
152192555 |
rs41266134 |
T |
C |
. |
PASS |
0.0242000 |
0.3905000 |
0.5962000 |
0.1412000 |
0.4274000 |
0.2923000 |
36.81 |
69.98 |
129 |
1000.00 |
3.63 |
48.06 |
0 |
48.06 |
0/1 |
| chr1 |
152192631 |
rs6587647 |
C |
T |
. |
PASS |
0.5287000 |
0.5576000 |
0.3800000 |
0.8300000 |
0.5112000 |
0.5599000 |
36.72 |
69.51 |
117 |
1000.00 |
6.12 |
36.75 |
0 |
36.75 |
0/1 |
| chr1 |
152192687 |
rs6587648 |
T |
C |
. |
PASS |
0.7905000 |
0.9841000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9425000 |
36.38 |
69.77 |
116 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152192825 |
rs6666097 |
C |
T |
. |
PASS |
0.2073000 |
0.2795000 |
0.2917000 |
0.5855000 |
0.3875000 |
0.3454000 |
36.33 |
70.0 |
134 |
1000.00 |
5.14 |
53.73 |
0 |
53.73 |
0/1 |
| chr1 |
152192978 |
rs6587649 |
T |
C |
. |
PASS |
0.7905000 |
0.9841000 |
0.9990000 |
1.0000000 |
1.0000000 |
0.9423000 |
36.88 |
70.0 |
99 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152193052 |
rs6587650 |
A |
G |
. |
PASS |
0.6891000 |
0.9784000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9147000 |
36.9 |
69.98 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152193121 |
rs6587651 |
G |
T |
. |
PASS |
0.5287000 |
0.5576000 |
0.3304000 |
0.8300000 |
0.5082000 |
0.5493000 |
36.83 |
70.0 |
157 |
1000.00 |
2.31 |
43.95 |
0 |
43.95 |
0/1 |
| chr1 |
152193286 |
rs7545406 |
G |
T |
. |
PASS |
0.2088000 |
0.2795000 |
0.2917000 |
0.5855000 |
0.3875000 |
0.3458000 |
36.19 |
69.8 |
220 |
1000.00 |
0.75 |
40.45 |
0 |
40.45 |
0/1 |
| chr1 |
152193291 |
rs6587652 |
G |
T |
. |
PASS |
0.5295000 |
0.5576000 |
0.3800000 |
0.8300000 |
0.5112000 |
0.5601000 |
36.74 |
69.79 |
224 |
1000.00 |
1.24 |
40.62 |
0 |
40.62 |
0/1 |
| chr1 |
152193544 |
rs7535536 |
A |
G |
. |
PASS |
0.4690000 |
0.5519000 |
0.3274000 |
0.8290000 |
0.5082000 |
0.5319000 |
36.68 |
70.0 |
90 |
1000.00 |
6.08 |
42.22 |
0 |
42.22 |
0/1 |
| chr1 |
152193547 |
rs6587653 |
G |
A |
. |
PASS |
0.7905000 |
0.9841000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9423000 |
36.45 |
69.77 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152193851 |
rs11204937 |
C |
T |
. |
PASS |
0.4705000 |
0.5519000 |
0.3284000 |
0.8290000 |
0.5082000 |
0.5325000 |
36.73 |
70.0 |
87 |
1000.00 |
3.37 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
152193990 |
rs11204938 |
A |
G |
. |
PASS |
0.4690000 |
0.5519000 |
0.3274000 |
0.8290000 |
0.5082000 |
0.5319000 |
36.11 |
70.0 |
47 |
929.85 |
5.67 |
57.45 |
0 |
57.45 |
0/1 |
| chr1 |
152195579 |
rs74127901 |
G |
A |
. |
PASS |
0.0817000 |
0.4150000 |
0.6091000 |
0.1680000 |
0.4877000 |
0.3307000 |
36.35 |
70.0 |
75 |
1000.00 |
17.87 |
49.33 |
0 |
49.33 |
0/1 |
| chr1 |
152195728 |
rs34061715 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.82 |
70.0 |
69 |
1000.00 |
1.36 |
98.55 |
0 |
98.55 |
1/1 |
| chr1 |
152195851 |
rs370014740,rs71582220 |
TAGTC |
T |
. |
PASS |
0.4410000 |
0.5533000 |
0.3423000 |
0.8310000 |
0.5092000 |
0.5284000 |
37.0 |
67.14 |
18 |
196.18 |
22.22 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
152276149 |
rs77422831 |
C |
T |
. |
PASS |
0.0113000 |
0.3919000 |
0.5804000 |
0.1421000 |
0.4315000 |
0.2869000 |
36.45 |
69.39 |
218 |
1000.00 |
1.83 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
152276377 |
rs139284720 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
49.28 |
105 |
679.58 |
28.19 |
23.81 |
0 |
23.81 |
0/1 |
| chr1 |
152276459 |
rs75448155 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
54.22 |
217 |
1000.00 |
4.59 |
26.73 |
0 |
26.73 |
0/1 |
| chr1 |
152276583 |
rs12083389 |
C |
G |
. |
PASS |
0.4796000 |
0.3213000 |
0.4732000 |
0.1233000 |
0.3599000 |
0.3614000 |
37.0 |
65.31 |
108 |
724.33 |
9.26 |
24.07 |
0 |
24.07 |
0/1 |
| chr1 |
152276598 |
rs12742178 |
G |
A |
. |
PASS |
0.0227000 |
0.0965000 |
0.1984000 |
0.0199000 |
0.1299000 |
0.0887000 |
36.5 |
61.33 |
92 |
681.10 |
3.99 |
26.09 |
0 |
26.09 |
0/1 |
| chr1 |
152276626 |
rs3126075 |
G |
C |
. |
PASS |
0.6074000 |
0.4395000 |
0.6498000 |
0.1561000 |
0.4836000 |
0.4778000 |
37.0 |
60.17 |
88 |
951.62 |
2.42 |
34.09 |
0 |
34.09 |
0/1 |
| chr1 |
152276699 |
rs12728605 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
61.1 |
160 |
1000.00 |
30.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
152276772 |
rs72697000 |
C |
A |
. |
PASS |
0.0113000 |
0.3919000 |
0.5853000 |
0.1421000 |
0.4448000 |
0.2905000 |
36.36 |
68.38 |
132 |
1000.00 |
5.63 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
152276871 |
rs3126066 |
A |
G |
. |
PASS |
0.5204000 |
0.4395000 |
0.6448000 |
0.1471000 |
0.4581000 |
0.4471000 |
36.79 |
69.3 |
114 |
1000.00 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
152276889 |
rs3126067 |
A |
G |
. |
PASS |
0.7912000 |
0.4553000 |
0.6498000 |
0.1511000 |
0.4581000 |
0.5226000 |
36.28 |
69.36 |
142 |
1000.00 |
4.31 |
47.18 |
0 |
47.18 |
0/1 |
| chr1 |
152277055 |
rs2065955 |
C |
G |
. |
PASS |
0.7882000 |
0.4481000 |
0.6349000 |
0.1481000 |
0.4427000 |
0.5142000 |
36.59 |
68.78 |
216 |
1000.00 |
1.56 |
40.28 |
0 |
40.28 |
0/1 |
| chr1 |
152277168 |
rs3091276 |
A |
G |
. |
PASS |
0.5567000 |
0.4539000 |
0.6587000 |
0.1730000 |
0.4939000 |
0.4736000 |
36.84 |
68.37 |
182 |
1000.00 |
0.43 |
41.76 |
0 |
41.76 |
0/1 |
| chr1 |
152277345 |
rs2065956 |
C |
T |
. |
PASS |
0.0113000 |
0.3905000 |
0.5823000 |
0.1421000 |
0.4335000 |
0.2875000 |
37.0 |
69.37 |
158 |
1000.00 |
1.71 |
43.04 |
0 |
43.04 |
0/1 |
| chr1 |
152277396 |
rs6681433 |
T |
C |
. |
PASS |
0.1150000 |
0.4193000 |
0.6062000 |
0.1710000 |
0.4928000 |
0.3411000 |
36.05 |
69.47 |
155 |
1000.00 |
1.99 |
49.03 |
0 |
49.03 |
0/1 |
| chr1 |
152277717 |
rs9436066 |
C |
A |
. |
PASS |
0.5212000 |
0.4524000 |
0.6835000 |
0.1730000 |
0.4969000 |
0.4696000 |
36.55 |
66.89 |
96 |
1000.00 |
12.03 |
55.21 |
0 |
55.21 |
0/1 |
| chr1 |
152277822 |
rs3126069 |
T |
C |
. |
PASS |
0.0378000 |
0.2709000 |
0.4831000 |
0.0944000 |
0.3078000 |
0.2238000 |
36.08 |
69.46 |
91 |
224.64 |
48.35 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
152277826 |
rs2065957 |
A |
C |
. |
PASS |
0.4894000 |
0.3674000 |
0.5883000 |
0.1123000 |
0.3712000 |
0.3936000 |
35.15 |
69.62 |
95 |
196.43 |
48.58 |
13.68 |
0 |
13.68 |
0/1 |
| chr1 |
152278555 |
rs80221306 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.67 |
90 |
949.74 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
152278689 |
rs57672167 |
C |
A |
. |
PASS |
0.3147000 |
0.4337000 |
0.6101000 |
0.1710000 |
0.4918000 |
0.3964000 |
36.62 |
64.76 |
174 |
1000.00 |
0.36 |
72.99 |
0 |
72.99 |
0/1 |
| chr1 |
152278814 |
rs2184952 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.27 |
289 |
1000.00 |
4.15 |
17.65 |
0 |
17.65 |
0/1 |
| chr1 |
152278856 |
rs11582087 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.82 |
68.26 |
237 |
1000.00 |
1.27 |
28.69 |
0 |
28.69 |
0/1 |
| chr1 |
152279019 |
rs57670307 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
59.01 |
341 |
1000.00 |
3.56 |
23.46 |
0 |
23.75 |
0/1 |
| chr1 |
152279406 |
rs192116923 |
T |
G |
. |
PASS |
0.0507000 |
0.1700000 |
0.2123000 |
0.3628000 |
0.2055000 |
0.1927000 |
35.0 |
69.67 |
15 |
156.84 |
26.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
152279729 |
rs3126072 |
C |
T |
. |
PASS |
0.5658000 |
0.4510000 |
0.6548000 |
0.1730000 |
0.4939000 |
0.4748000 |
36.53 |
69.32 |
164 |
1000.00 |
1.41 |
46.34 |
0 |
46.34 |
0/1 |
| chr1 |
152279841 |
rs3126074 |
G |
C |
. |
PASS |
0.5189000 |
0.4510000 |
0.6548000 |
0.1720000 |
0.4939000 |
0.4623000 |
36.81 |
68.9 |
128 |
1000.00 |
1.44 |
49.22 |
0 |
49.22 |
0/1 |
| chr1 |
152279920 |
rs55650366 |
A |
G |
. |
PASS |
0.1203000 |
0.4207000 |
0.6071000 |
0.1710000 |
0.4908000 |
0.3425000 |
36.42 |
68.4 |
149 |
1000.00 |
0.53 |
55.70 |
0 |
55.70 |
0/1 |
| chr1 |
152280032 |
rs71625200 |
T |
C |
. |
PASS |
0.1218000 |
0.4222000 |
0.6071000 |
0.1710000 |
0.4908000 |
0.3431000 |
36.37 |
68.93 |
236 |
1000.00 |
4.24 |
56.78 |
0 |
56.78 |
0/1 |
| chr1 |
152280170 |
rs71625201 |
C |
G |
. |
PASS |
0.1135000 |
0.4092000 |
0.5665000 |
0.1690000 |
0.4908000 |
0.3305000 |
36.81 |
65.97 |
105 |
1000.00 |
12.26 |
59.05 |
0 |
59.05 |
0/1 |
| chr1 |
152280265 |
rs71625202 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.56 |
66 |
516.58 |
72.73 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
152280471 |
rs78179835 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
58.87 |
182 |
1000.00 |
11.72 |
21.43 |
0 |
21.43 |
0/1 |
| chr1 |
152280559 |
rs150122015 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.39 |
154 |
255.87 |
21.65 |
11.69 |
0 |
11.69 |
0/1 |
| chr1 |
152280573 |
rs76471961 |
C |
A |
. |
PASS |
0.0136000 |
0.0533000 |
0.1200000 |
0.0258000 |
0.0593000 |
0.0491000 |
37.0 |
51.82 |
153 |
212.96 |
27.45 |
11.11 |
0 |
11.11 |
0/1 |
| chr1 |
152280736 |
rs78974621 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.11 |
96 |
54.51 |
45.14 |
9.38 |
0 |
9.38 |
0/1 |
| chr1 |
152280759 |
rs2338554 |
A |
G |
. |
PASS |
0.4720000 |
0.3501000 |
0.4454000 |
0.1531000 |
0.3773000 |
0.3672000 |
37.0 |
69.07 |
88 |
287.46 |
31.49 |
15.91 |
0 |
15.91 |
0/1 |
| chr1 |
152280782 |
rs2184953 |
A |
G |
. |
PASS |
0.7897000 |
0.4683000 |
0.6607000 |
0.1759000 |
0.5020000 |
0.5397000 |
36.79 |
69.55 |
93 |
1000.00 |
2.82 |
62.37 |
0 |
62.37 |
0/1 |
| chr1 |
152280788 |
rs66954353 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.71 |
99 |
375.51 |
24.36 |
17.17 |
0 |
17.17 |
0/1 |
| chr1 |
152280864 |
rs2184954 |
A |
G |
. |
PASS |
0.5204000 |
0.4524000 |
0.6577000 |
0.1720000 |
0.4949000 |
0.4637000 |
36.58 |
67.89 |
169 |
1000.00 |
2.09 |
68.05 |
0 |
68.05 |
0/1 |
| chr1 |
152280900 |
rs74129452 |
T |
G |
. |
PASS |
0.3843000 |
0.3487000 |
0.4444000 |
0.1541000 |
0.3773000 |
0.3438000 |
36.59 |
67.67 |
193 |
1000.00 |
1.20 |
30.05 |
0 |
30.05 |
0/1 |
| chr1 |
152281006 |
. |
TAA |
TGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.76 |
69.92 |
182 |
1000.00 |
0.09 |
28.02 |
0 |
29.67 |
0/1 |
| chr1 |
152281039 |
rs7522925 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.23 |
70.0 |
171 |
1000.00 |
5.05 |
27.49 |
0 |
27.49 |
0/1 |
| chr1 |
152281228 |
rs7546186 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.81 |
68.03 |
224 |
1000.00 |
2.68 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
152281290 |
rs80353812 |
A |
G |
. |
PASS |
0.3850000 |
0.3343000 |
0.4355000 |
0.1292000 |
0.3405000 |
0.3281000 |
36.81 |
65.98 |
212 |
1000.00 |
2.42 |
30.19 |
0 |
30.19 |
0/1 |
| chr1 |
152281304 |
rs7512857 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.83 |
65.94 |
230 |
1000.00 |
6.46 |
30.43 |
0 |
30.43 |
0/1 |
| chr1 |
152281479 |
rs3126079 |
G |
T |
. |
PASS |
0.7897000 |
0.4683000 |
0.6607000 |
0.1759000 |
0.4939000 |
0.5381000 |
36.45 |
69.61 |
231 |
1000.00 |
1.73 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
152281523 |
rs80059102 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.8 |
68.19 |
205 |
1000.00 |
22.98 |
28.78 |
0 |
28.78 |
0/1 |
| chr1 |
152281534 |
rs113544881 |
A |
T |
. |
PASS |
0.3336000 |
0.3285000 |
0.4335000 |
0.1302000 |
0.3405000 |
0.3135000 |
36.77 |
67.92 |
219 |
1000.00 |
19.88 |
23.74 |
0 |
23.74 |
0/1 |
| chr1 |
152281690 |
rs12407748 |
C |
T |
. |
PASS |
0.0113000 |
0.3905000 |
0.5843000 |
0.1421000 |
0.4315000 |
0.2875000 |
36.36 |
69.89 |
236 |
1000.00 |
5.50 |
47.88 |
0 |
47.88 |
0/1 |
| chr1 |
152281948 |
rs12405241 |
G |
A |
. |
PASS |
0.0113000 |
0.3905000 |
0.5843000 |
0.1421000 |
0.4315000 |
0.2875000 |
36.02 |
69.73 |
218 |
1000.00 |
1.05 |
39.45 |
0 |
39.45 |
0/1 |
| chr1 |
152282267 |
rs12405278 |
G |
A |
. |
PASS |
0.0121000 |
0.3905000 |
0.5843000 |
0.1421000 |
0.4315000 |
0.2877000 |
37.0 |
69.98 |
124 |
1000.00 |
3.67 |
46.77 |
0 |
46.77 |
0/1 |
| chr1 |
152282311 |
rs12407807 |
C |
T |
. |
PASS |
0.0461000 |
0.3905000 |
0.5843000 |
0.1421000 |
0.4315000 |
0.2967000 |
36.65 |
69.96 |
135 |
1000.00 |
0.70 |
50.37 |
0 |
50.37 |
0/1 |
| chr1 |
152282917 |
rs11204978 |
G |
T |
. |
PASS |
0.0113000 |
0.3905000 |
0.5823000 |
0.1421000 |
0.4315000 |
0.2871000 |
36.58 |
69.96 |
136 |
1000.00 |
3.12 |
41.91 |
0 |
41.91 |
0/1 |
| chr1 |
152283236 |
rs11581433 |
T |
C |
. |
PASS |
0.1218000 |
0.4236000 |
0.6062000 |
0.1710000 |
0.4908000 |
0.3431000 |
36.66 |
66.86 |
169 |
1000.00 |
7.78 |
41.42 |
0 |
41.42 |
0/1 |
| chr1 |
152283283 |
rs11586631 |
C |
T |
. |
PASS |
0.0144000 |
0.3890000 |
0.5823000 |
0.1421000 |
0.4315000 |
0.2877000 |
36.52 |
67.63 |
171 |
1000.00 |
2.57 |
43.86 |
0 |
43.86 |
0/1 |
| chr1 |
152283862 |
rs58001094 |
G |
C |
. |
PASS |
0.7806000 |
0.4611000 |
0.6577000 |
0.1759000 |
0.4939000 |
0.5341000 |
36.63 |
68.76 |
216 |
1000.00 |
5.56 |
44.44 |
0 |
44.91 |
0/1 |
| chr1 |
152283975 |
rs66831674 |
A |
G |
. |
PASS |
0.5204000 |
0.4524000 |
0.6558000 |
0.1720000 |
0.4939000 |
0.4631000 |
36.39 |
68.09 |
148 |
1000.00 |
3.80 |
53.38 |
0 |
53.38 |
0/1 |
| chr1 |
152284854 |
rs3120653 |
A |
G |
. |
PASS |
0.5567000 |
0.4553000 |
0.6558000 |
0.1730000 |
0.4939000 |
0.4732000 |
36.67 |
69.56 |
153 |
1000.00 |
8.06 |
47.71 |
0 |
47.71 |
0/1 |
| chr1 |
152285099 |
rs74129461 |
C |
T |
. |
PASS |
0.0681000 |
0.4150000 |
0.6062000 |
0.1710000 |
0.4908000 |
0.3277000 |
36.34 |
69.96 |
182 |
1000.00 |
1.10 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
152285930 |
rs11584340 |
G |
A |
. |
PASS |
0.1286000 |
0.4222000 |
0.6062000 |
0.1710000 |
0.4908000 |
0.3446000 |
36.44 |
69.9 |
173 |
1000.00 |
6.04 |
61.85 |
0 |
61.85 |
0/1 |
| chr1 |
152286002 |
rs2011331 |
T |
C |
. |
PASS |
0.5204000 |
0.4539000 |
0.6587000 |
0.1730000 |
0.4939000 |
0.4641000 |
36.81 |
69.98 |
111 |
1000.00 |
7.12 |
56.76 |
0 |
56.76 |
0/1 |
| chr1 |
152286032 |
rs11588170 |
C |
T |
. |
PASS |
0.0113000 |
0.3905000 |
0.5823000 |
0.1421000 |
0.4315000 |
0.2871000 |
36.33 |
70.0 |
96 |
1000.00 |
10.19 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
152286367 |
rs41267154 |
C |
A |
. |
PASS |
0.1150000 |
0.4193000 |
0.6062000 |
0.1710000 |
0.4908000 |
0.3407000 |
36.78 |
70.0 |
109 |
1000.00 |
0.88 |
49.54 |
0 |
49.54 |
0/1 |
| chr1 |
152323132 |
rs12568784 |
G |
T |
. |
PASS |
0.2905000 |
0.4049000 |
0.4554000 |
0.1421000 |
0.3272000 |
0.3169000 |
36.57 |
70.0 |
104 |
1000.00 |
9.34 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
152325732 |
rs12022217 |
G |
A |
. |
PASS |
0.2905000 |
0.4049000 |
0.4534000 |
0.1421000 |
0.3272000 |
0.3165000 |
35.74 |
69.88 |
144 |
1000.00 |
2.34 |
39.58 |
0 |
39.58 |
0/1 |
| chr1 |
152327469 |
rs76514540 |
C |
T |
. |
PASS |
0.0159000 |
0.3804000 |
0.4534000 |
0.1372000 |
0.3272000 |
0.2396000 |
35.86 |
69.13 |
239 |
1000.00 |
28.39 |
26.36 |
0 |
26.36 |
0/1 |
| chr1 |
152327502 |
rs138997916 |
A |
G |
. |
PASS |
0.0129000 |
0.2939000 |
0.4018000 |
0.1044000 |
0.2495000 |
0.1947000 |
35.56 |
68.76 |
175 |
449.06 |
43.43 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
152328411 |
rs6679449 |
A |
G |
. |
PASS |
0.7988000 |
0.4553000 |
0.5079000 |
0.1690000 |
0.3742000 |
0.4832000 |
36.84 |
68.47 |
232 |
1000.00 |
13.25 |
32.76 |
0 |
32.76 |
0/1 |
| chr1 |
152329435 |
rs2282303 |
C |
T |
. |
PASS |
0.3631000 |
0.4164000 |
0.5020000 |
0.1441000 |
0.3313000 |
0.3482000 |
35.8 |
70.0 |
64 |
991.98 |
12.92 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
152331240 |
rs3818831 |
G |
A |
. |
PASS |
0.4493000 |
0.4222000 |
0.5010000 |
0.1461000 |
0.3303000 |
0.3718000 |
37.0 |
70.0 |
70 |
1000.00 |
10.00 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
152372035 |
rs7515448 |
A |
G |
. |
PASS |
0.6437000 |
0.4510000 |
0.4960000 |
0.1700000 |
0.3384000 |
0.4325000 |
37.0 |
70.0 |
10 |
62.74 |
13.33 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
152382062 |
rs10888486 |
C |
T |
. |
PASS |
0.0189000 |
0.3689000 |
0.4296000 |
0.1431000 |
0.3231000 |
0.2344000 |
36.29 |
70.0 |
45 |
530.17 |
8.10 |
37.78 |
0 |
37.78 |
0/1 |
| chr1 |
152382120 |
rs3829868 |
C |
T |
. |
PASS |
0.0635000 |
0.3689000 |
0.4315000 |
0.1441000 |
0.3231000 |
0.2468000 |
36.48 |
70.0 |
62 |
729.62 |
4.35 |
37.10 |
0 |
37.10 |
0/1 |
| chr1 |
152384498 |
rs3215709 |
G |
GT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
408.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152384759 |
rs7521839 |
A |
G |
. |
PASS |
0.2791000 |
0.3890000 |
0.4325000 |
0.1491000 |
0.3241000 |
0.3079000 |
37.0 |
69.29 |
43 |
1000.00 |
0.50 |
65.12 |
0 |
65.12 |
0/1 |
| chr1 |
152384833 |
rs1923492 |
T |
C |
. |
PASS |
0.7829000 |
0.8862000 |
0.9802000 |
0.8181000 |
0.9509000 |
0.8768000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152484129 |
rs2105117 |
G |
A |
. |
PASS |
0.3132000 |
0.5346000 |
0.6111000 |
0.6223000 |
0.6002000 |
0.5220000 |
36.4 |
70.0 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152487979 |
rs2282296 |
C |
T |
. |
PASS |
0.1611000 |
0.5245000 |
0.6081000 |
0.6213000 |
0.6002000 |
0.4796000 |
36.61 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152488063 |
rs1053588 |
C |
T |
. |
PASS |
0.5151000 |
0.5476000 |
0.6478000 |
0.6213000 |
0.6043000 |
0.5851000 |
35.94 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152552285 |
rs512208 |
C |
A |
. |
PASS |
0.1384000 |
0.2853000 |
0.3264000 |
0.3827000 |
0.2975000 |
0.2768000 |
36.02 |
68.72 |
169 |
1000.00 |
2.96 |
50.89 |
0 |
50.89 |
0/1 |
| chr1 |
152590187 |
rs6677595 |
C |
T |
. |
PASS |
0.3714000 |
0.6225000 |
0.6379000 |
0.6412000 |
0.6217000 |
0.5629000 |
36.8 |
70.0 |
102 |
1000.00 |
0.59 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
152636843 |
rs9793541 |
A |
T |
. |
PASS |
0.0159000 |
0.1585000 |
0.0298000 |
0.3032000 |
0.1616000 |
0.1246000 |
35.45 |
69.68 |
317 |
1000.00 |
4.87 |
39.12 |
0 |
39.12 |
0/1 |
| chr1 |
152681543 |
rs1332496 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9998000 |
35.74 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152681680 |
rs6143428,rs11269814 |
C |
CAGCTCTGGGGGCTGCTGT |
. |
PASS |
0.9758000 |
0.8530000 |
0.6855000 |
0.7177000 |
0.7301000 |
0.8005000 |
36.67 |
70.0 |
103 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152691943 |
rs1332499 |
G |
A |
. |
PASS |
0.5461000 |
0.3804000 |
0.1716000 |
0.3608000 |
0.2321000 |
0.3492000 |
37.0 |
70.0 |
31 |
417.23 |
21.34 |
41.94 |
0 |
41.94 |
0/1 |
| chr1 |
152692074 |
rs1332500 |
G |
C |
. |
PASS |
0.5461000 |
0.3804000 |
0.1716000 |
0.3608000 |
0.2321000 |
0.3492000 |
37.0 |
70.0 |
109 |
1000.00 |
0.62 |
43.12 |
0 |
43.12 |
0/1 |
| chr1 |
152692472 |
rs873775 |
A |
C |
. |
PASS |
0.5461000 |
0.3804000 |
0.1716000 |
0.3608000 |
0.2321000 |
0.3492000 |
36.77 |
70.0 |
119 |
1000.00 |
13.80 |
43.70 |
0 |
43.70 |
0/1 |
| chr1 |
152692588 |
rs944682 |
A |
G |
. |
PASS |
0.5461000 |
0.3804000 |
0.1716000 |
0.3608000 |
0.2321000 |
0.3492000 |
37.0 |
70.0 |
58 |
1000.00 |
3.45 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
152692781 |
rs3814350 |
G |
T |
. |
PASS |
0.5461000 |
0.3804000 |
0.1716000 |
0.3608000 |
0.2321000 |
0.3492000 |
37.0 |
70.0 |
41 |
591.84 |
10.84 |
43.90 |
0 |
43.90 |
0/1 |
| chr1 |
152692803 |
rs41268476 |
A |
C |
. |
PASS |
0.0166000 |
0.0447000 |
0.0169000 |
0.0517000 |
0.0440000 |
0.0329000 |
37.0 |
70.0 |
26 |
511.68 |
15.90 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
152710165 |
rs11588950 |
G |
T |
. |
PASS |
0.3275000 |
0.2565000 |
0.1042000 |
0.3917000 |
0.2403000 |
0.2686000 |
37.0 |
68.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152732436 |
rs4845480 |
G |
C |
. |
PASS |
0.5787000 |
0.4914000 |
0.4187000 |
0.5159000 |
0.4182000 |
0.4904000 |
36.49 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152733301 |
rs4329520 |
T |
A |
. |
PASS |
0.5787000 |
0.4914000 |
0.4177000 |
0.5159000 |
0.4182000 |
0.4902000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152759678 |
rs1034109 |
C |
T |
. |
PASS |
0.7648000 |
0.5058000 |
0.4087000 |
0.5000000 |
0.4192000 |
0.5365000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152759950 |
rs11205106 |
A |
G |
. |
PASS |
0.7625000 |
0.5058000 |
0.4097000 |
0.5000000 |
0.4172000 |
0.5357000 |
36.58 |
68.81 |
258 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152777465 |
rs1048535 |
A |
G |
. |
PASS |
0.1657000 |
0.2262000 |
0.0347000 |
0.3608000 |
0.1646000 |
0.1867000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152777868 |
rs36107483 |
A |
G |
. |
PASS |
0.1672000 |
0.2262000 |
0.0347000 |
0.3608000 |
0.1636000 |
0.1869000 |
35.79 |
68.18 |
169 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152777964 |
rs17624493 |
G |
A |
. |
PASS |
0.0703000 |
0.2176000 |
0.0347000 |
0.3588000 |
0.1636000 |
0.1597000 |
36.68 |
69.86 |
151 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152778118 |
rs35436039 |
G |
A |
. |
PASS |
0.2973000 |
0.2565000 |
0.0774000 |
0.3917000 |
0.2577000 |
0.2586000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
152785170 |
rs56056379 |
G |
A |
. |
PASS |
0.0000000 |
0.0303000 |
0.0000000 |
0.0408000 |
0.0092000 |
0.0141770 |
36.59 |
68.64 |
189 |
1000.00 |
2.10 |
61.38 |
0 |
61.38 |
0/1 |
| chr1 |
152882952 |
rs11807064 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.48 |
69.93 |
309 |
1000.00 |
3.71 |
22.98 |
0 |
22.98 |
0/1 |
| chr1 |
152882979 |
rs17855670 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.57 |
69.82 |
367 |
1000.00 |
7.00 |
40.87 |
0 |
41.14 |
0/1 |
| chr1 |
152882980 |
. |
CAC |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.47 |
69.75 |
345 |
1000.00 |
9.04 |
42.03 |
0 |
42.61 |
0/1 |
| chr1 |
152883056 |
rs45609438 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
69.88 |
255 |
232.28 |
8.31 |
9.80 |
0 |
9.80 |
0/1 |
| chr1 |
152908814 |
rs58298199 |
A |
C |
. |
PASS |
0.4735000 |
0.4452000 |
0.6438000 |
0.4821000 |
0.4724000 |
0.5054000 |
37.0 |
70.0 |
88 |
1000.00 |
2.27 |
52.27 |
0 |
52.27 |
0/1 |
| chr1 |
152944594 |
rs3170863 |
C |
T |
. |
PASS |
0.8306000 |
0.4986000 |
0.6319000 |
0.5656000 |
0.4918000 |
0.6252000 |
36.0 |
70.0 |
72 |
729.28 |
5.56 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
152957832 |
rs1611762 |
C |
A |
. |
PASS |
0.4523000 |
0.4395000 |
0.5972000 |
0.5348000 |
0.4990000 |
0.5054000 |
36.14 |
69.04 |
153 |
1000.00 |
2.92 |
36.60 |
0 |
36.60 |
0/1 |
| chr1 |
152957887 |
rs1611764 |
G |
A |
. |
PASS |
0.6278000 |
0.4524000 |
0.6319000 |
0.5348000 |
0.5020000 |
0.5611000 |
36.82 |
68.97 |
185 |
1000.00 |
1.47 |
36.22 |
0 |
36.22 |
0/1 |
| chr1 |
152975495 |
rs2075739 |
G |
A |
. |
PASS |
0.5000000 |
0.4337000 |
0.6319000 |
0.5328000 |
0.5051000 |
0.5250000 |
36.08 |
70.0 |
26 |
420.27 |
7.69 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
152975715 |
rs28989168 |
C |
T |
. |
PASS |
0.0015000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0000000 |
0.0003994 |
36.23 |
69.15 |
258 |
1000.00 |
2.45 |
24.03 |
0 |
24.03 |
0/1 |
| chr1 |
152975739 |
rs17851565 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.57 |
68.74 |
274 |
779.59 |
23.76 |
14.60 |
0 |
15.33 |
0/1 |
| chr1 |
152975763 |
rs1977734 |
C |
A |
. |
PASS |
0.5000000 |
0.4323000 |
0.6319000 |
0.5318000 |
0.5051000 |
0.5246000 |
35.89 |
69.44 |
298 |
1000.00 |
3.09 |
32.55 |
0 |
36.24 |
0/1 |
| chr1 |
152975829 |
rs1970328 |
A |
G |
. |
PASS |
0.5000000 |
0.4337000 |
0.6319000 |
0.5328000 |
0.5051000 |
0.5250000 |
36.65 |
69.83 |
268 |
1000.00 |
0.88 |
51.87 |
0 |
51.87 |
0/1 |
| chr1 |
152975941 |
rs1055935 |
C |
G |
. |
PASS |
0.7133000 |
0.4496000 |
0.6319000 |
0.5328000 |
0.5051000 |
0.5835000 |
36.68 |
70.0 |
85 |
1000.00 |
14.18 |
43.53 |
0 |
43.53 |
0/1 |
| chr1 |
153004778 |
rs3820141 |
C |
T |
. |
PASS |
0.4402000 |
0.4251000 |
0.5913000 |
0.5099000 |
0.4990000 |
0.4940000 |
37.0 |
70.0 |
20 |
74.41 |
40.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
153004809 |
rs3181787 |
T |
C |
. |
PASS |
0.4402000 |
0.4251000 |
0.5913000 |
0.5099000 |
0.4990000 |
0.4940000 |
37.0 |
70.0 |
53 |
392.79 |
32.61 |
26.42 |
0 |
26.42 |
0/1 |
| chr1 |
153004848 |
rs3795381 |
T |
C |
. |
PASS |
0.4402000 |
0.4251000 |
0.5913000 |
0.5099000 |
0.4990000 |
0.4940000 |
37.0 |
69.95 |
103 |
1000.00 |
17.67 |
38.83 |
0 |
38.83 |
0/1 |
| chr1 |
153004853 |
rs3795382 |
C |
T |
. |
PASS |
0.4402000 |
0.4251000 |
0.5913000 |
0.5099000 |
0.4990000 |
0.4940000 |
37.0 |
69.93 |
120 |
1000.00 |
11.67 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
153004983 |
rs12195 |
C |
T |
. |
PASS |
0.4410000 |
0.4265000 |
0.5923000 |
0.5179000 |
0.5061000 |
0.4976000 |
36.29 |
68.76 |
133 |
1000.00 |
3.56 |
51.13 |
0 |
51.13 |
0/1 |
| chr1 |
153005156 |
rs2711 |
C |
T |
. |
PASS |
0.4402000 |
0.4251000 |
0.5913000 |
0.5099000 |
0.4990000 |
0.4940000 |
37.0 |
70.0 |
24 |
438.30 |
9.62 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
153029137 |
rs3737864 |
C |
T |
. |
PASS |
0.0983000 |
0.2233000 |
0.1151000 |
0.4384000 |
0.2352000 |
0.2141000 |
37.0 |
64.6 |
32 |
288.91 |
12.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
153066262 |
rs1933388 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
27 |
95.11 |
42.96 |
18.52 |
0 |
18.52 |
0/1 |
| chr1 |
153122310 |
rs510277 |
G |
A |
. |
PASS |
0.2080000 |
0.4294000 |
0.5149000 |
0.5517000 |
0.5000000 |
0.4265000 |
35.0 |
70.0 |
27 |
363.49 |
16.67 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
153122620 |
rs513555 |
T |
C |
. |
PASS |
0.4682000 |
0.4957000 |
0.6091000 |
0.5537000 |
0.5000000 |
0.5238000 |
37.0 |
70.0 |
30 |
336.71 |
14.55 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
153198457 |
rs1410862 |
A |
C |
. |
PASS |
0.0507000 |
0.1571000 |
0.0685000 |
0.2793000 |
0.1564000 |
0.1356000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153233510 |
rs6661601 |
A |
G |
. |
PASS |
0.0908000 |
0.2810000 |
0.0655000 |
0.3419000 |
0.1912000 |
0.1821000 |
36.82 |
70.0 |
233 |
1000.00 |
8.38 |
51.93 |
0 |
56.22 |
0/1 |
| chr1 |
153233991 |
rs11272549,rs11275959 |
A |
ACTCTGGCGGCGG |
. |
PASS |
0.6664000 |
0.7954000 |
0.4563000 |
0.7147000 |
0.6493000 |
0.6484000 |
36.64 |
70.0 |
197 |
1000.00 |
2.25 |
39.09 |
0 |
40.10 |
0/1 |
| chr1 |
153270362 |
rs2771110 |
C |
G |
. |
PASS |
0.5658000 |
0.4841000 |
0.7282000 |
0.3598000 |
0.5429000 |
0.5413000 |
37.0 |
70.0 |
26 |
177.52 |
6.59 |
26.92 |
0 |
26.92 |
0/1 |
| chr1 |
153271524 |
rs821431 |
C |
T |
. |
PASS |
0.5719000 |
0.5216000 |
0.7083000 |
0.4016000 |
0.5685000 |
0.5575000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153277423 |
rs843971 |
C |
T |
. |
PASS |
0.3850000 |
0.4553000 |
0.5833000 |
0.3996000 |
0.5501000 |
0.4698000 |
36.29 |
70.0 |
54 |
1000.00 |
10.24 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
153279462 |
rs66966700,rs377019962 |
TAAG |
T |
. |
PASS |
0.6997000 |
0.8213000 |
0.7857000 |
0.8628000 |
0.8221000 |
0.7905000 |
36.4 |
70.0 |
29 |
688.07 |
5.86 |
68.97 |
0 |
68.97 |
0/1 |
| chr1 |
153279696 |
rs55991125 |
C |
T |
. |
PASS |
0.0045000 |
0.0303000 |
0.0000000 |
0.0398000 |
0.0266000 |
0.0185700 |
36.55 |
70.0 |
141 |
1000.00 |
11.99 |
37.59 |
0 |
37.59 |
0/1 |
| chr1 |
153283004 |
rs821423 |
C |
T |
. |
PASS |
0.8404000 |
0.8732000 |
0.8036000 |
0.8658000 |
0.8476000 |
0.8440000 |
37.0 |
70.0 |
18 |
331.05 |
17.78 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
153313044 |
rs12063091 |
C |
T |
. |
PASS |
0.1536000 |
0.0389000 |
0.0000000 |
0.0398000 |
0.0256000 |
0.0589000 |
36.66 |
70.0 |
58 |
1000.00 |
10.74 |
60.34 |
0 |
60.34 |
0/1 |
| chr1 |
153314153 |
rs3006448 |
C |
A |
. |
PASS |
0.7466000 |
0.8660000 |
0.9058000 |
0.8767000 |
0.8650000 |
0.8444000 |
36.71 |
70.0 |
101 |
1000.00 |
0.39 |
40.59 |
0 |
40.59 |
0/1 |
| chr1 |
153314347 |
rs3006449 |
C |
T |
. |
PASS |
0.7027000 |
0.8588000 |
0.7411000 |
0.8728000 |
0.8476000 |
0.7945000 |
37.0 |
70.0 |
11 |
143.27 |
14.55 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
153315467 |
rs5777858 |
T |
TAAG |
. |
PASS |
0.9879000 |
0.9135000 |
0.9058000 |
0.9165000 |
0.8906000 |
0.9277000 |
36.64 |
70.0 |
11 |
404.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153315579 |
rs3014863 |
A |
G |
. |
PASS |
0.9864000 |
0.9135000 |
0.9058000 |
0.9165000 |
0.8896000 |
0.9271000 |
36.4 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153320334 |
rs3006457 |
T |
C |
. |
PASS |
0.7451000 |
0.8660000 |
0.9058000 |
0.8767000 |
0.8630000 |
0.8436000 |
36.33 |
70.0 |
30 |
617.09 |
2.22 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
153320372 |
rs3006458 |
T |
G |
. |
PASS |
0.7027000 |
0.8588000 |
0.7411000 |
0.8728000 |
0.8456000 |
0.7941000 |
36.65 |
70.0 |
57 |
1000.00 |
1.75 |
59.65 |
0 |
59.65 |
0/1 |
| chr1 |
153320401 |
rs12096209 |
G |
A |
. |
PASS |
0.2247000 |
0.0476000 |
0.0000000 |
0.0398000 |
0.0266000 |
0.0791000 |
37.0 |
70.0 |
61 |
1000.00 |
4.92 |
49.18 |
0 |
49.18 |
0/1 |
| chr1 |
153362788 |
rs41264638 |
T |
C |
. |
PASS |
0.0038000 |
0.1571000 |
0.0069000 |
0.2704000 |
0.0654000 |
0.0913000 |
35.8 |
70.0 |
18 |
319.04 |
15.56 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
153390626 |
rs55985140 |
G |
A |
. |
PASS |
0.0015000 |
0.0144000 |
0.0000000 |
0.0348000 |
0.0061000 |
0.0105830 |
36.08 |
69.5 |
169 |
1000.00 |
1.78 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
153410822 |
rs10888561 |
C |
A |
. |
PASS |
0.5000000 |
0.7061000 |
0.6042000 |
0.7376000 |
0.5869000 |
0.6142000 |
35.74 |
70.0 |
51 |
579.50 |
25.80 |
37.25 |
0 |
37.25 |
0/1 |
| chr1 |
153412392 |
rs3006428 |
T |
G |
. |
PASS |
0.9599000 |
0.8703000 |
0.7649000 |
0.8310000 |
0.6718000 |
0.8261000 |
36.58 |
69.74 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153430249 |
rs35971850 |
TG |
T |
. |
PASS |
0.0106000 |
0.3617000 |
0.3988000 |
0.2594000 |
0.3507000 |
0.2538000 |
36.79 |
69.93 |
39 |
1000.00 |
2.30 |
74.36 |
0 |
74.36 |
0/1 |
| chr1 |
153431406 |
rs3014837 |
C |
G |
. |
PASS |
0.9879000 |
0.9856000 |
1.0000000 |
0.9573000 |
0.9857000 |
0.9834000 |
36.65 |
69.29 |
138 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153431435 |
rs72708760 |
T |
G |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0070000 |
0.0000000 |
0.0015974 |
36.09 |
69.49 |
117 |
1000.00 |
0.74 |
45.30 |
0 |
45.30 |
0/1 |
| chr1 |
153433068 |
rs12217109 |
G |
A |
. |
PASS |
0.1566000 |
0.1369000 |
0.1587000 |
0.0895000 |
0.0849000 |
0.1268000 |
36.52 |
69.08 |
36 |
891.42 |
4.00 |
69.44 |
0 |
69.44 |
0/1 |
| chr1 |
153509890 |
rs3795393 |
T |
C |
. |
PASS |
0.0045000 |
0.1254000 |
0.2440000 |
0.0805000 |
0.1186000 |
0.1070000 |
36.11 |
70.0 |
55 |
905.76 |
16.16 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
153587308 |
rs11548104 |
C |
T |
. |
PASS |
0.7700000 |
0.7032000 |
0.6776000 |
0.5149000 |
0.6227000 |
0.6621000 |
35.5 |
70.0 |
27 |
530.57 |
1.85 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
153588208 |
rs9792963 |
G |
A |
. |
PASS |
0.0772000 |
0.5980000 |
0.6726000 |
0.4612000 |
0.4663000 |
0.4223000 |
37.0 |
70.0 |
16 |
211.76 |
7.14 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
153588279 |
rs9792967 |
G |
A |
. |
PASS |
0.0772000 |
0.5980000 |
0.6726000 |
0.4612000 |
0.4663000 |
0.4223000 |
36.67 |
70.0 |
65 |
1000.00 |
4.62 |
55.38 |
0 |
55.38 |
0/1 |
| chr1 |
153588340 |
rs11548103 |
C |
T |
. |
PASS |
0.2300000 |
0.2983000 |
0.3224000 |
0.4851000 |
0.3753000 |
0.3377000 |
36.25 |
70.0 |
78 |
1000.00 |
8.49 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
153602861 |
rs3790411 |
G |
C |
. |
PASS |
0.5053000 |
0.7003000 |
0.6964000 |
0.5268000 |
0.6728000 |
0.6078000 |
37.0 |
70.0 |
19 |
282.13 |
9.36 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
153636432 |
rs10598064,rs111228460,rs78824938 |
TTAC |
T |
. |
PASS |
0.4697000 |
0.1268000 |
0.0764000 |
0.1392000 |
0.1513000 |
0.2145000 |
37.0 |
70.0 |
16 |
369.28 |
22.73 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
153658480 |
rs11264236 |
G |
A |
. |
PASS |
0.0091000 |
0.1009000 |
0.1647000 |
0.2972000 |
0.1677000 |
0.1420000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153662544 |
. |
ATCTC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.75 |
70.0 |
21 |
196.88 |
1.19 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
153742610 |
rs12120312 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
16 |
127.09 |
25.00 |
31.25 |
0 |
37.50 |
0/1 |
| chr1 |
153743234 |
rs6675978 |
T |
C |
. |
PASS |
0.2995000 |
0.3573000 |
0.7004000 |
0.4264000 |
0.4458000 |
0.4423000 |
36.68 |
69.47 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153743289 |
rs12068256 |
C |
G |
. |
PASS |
0.4629000 |
0.1844000 |
0.4127000 |
0.2942000 |
0.2321000 |
0.3353000 |
35.8 |
70.0 |
20 |
771.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
153750207 |
rs139720425 |
C |
CCTT |
. |
PASS |
0.3759000 |
0.3055000 |
0.5198000 |
0.3678000 |
0.2403000 |
0.3670000 |
36.0 |
70.0 |
36 |
662.98 |
13.33 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
153750214 |
rs374974027,rs3841381 |
TC |
T |
. |
PASS |
0.4115000 |
0.3213000 |
0.5417000 |
0.3787000 |
0.2699000 |
0.3910000 |
35.52 |
70.0 |
40 |
844.81 |
13.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
153790495 |
rs72694221 |
A |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
25 |
598.22 |
7.06 |
68.00 |
0 |
68.00 |
0/1 |
| chr1 |
153790501 |
rs4363451 |
C |
T |
. |
PASS |
0.0847000 |
0.4049000 |
0.2847000 |
0.2893000 |
0.3323000 |
0.2588000 |
35.11 |
70.0 |
30 |
634.85 |
3.51 |
63.33 |
0 |
63.33 |
0/1 |
| chr1 |
153824852 |
rs16835630 |
T |
C |
. |
PASS |
0.0015000 |
0.0058000 |
0.0337000 |
0.0109000 |
0.0072000 |
0.0115820 |
37.0 |
70.0 |
15 |
214.77 |
20.95 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
153825208 |
rs4540690 |
A |
G |
. |
PASS |
0.3457000 |
0.3285000 |
0.0685000 |
0.5239000 |
0.3323000 |
0.3207000 |
37.0 |
70.0 |
39 |
518.47 |
22.44 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
153825404 |
rs4845576 |
C |
T |
. |
PASS |
0.0174000 |
0.3991000 |
0.2837000 |
0.2883000 |
0.3272000 |
0.2388000 |
37.0 |
70.0 |
10 |
146.28 |
60.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
153900067 |
. |
TTG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.0 |
14 |
208.22 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
153900073 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.67 |
11 |
50.17 |
60.61 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
153906397 |
rs11264621 |
A |
G |
. |
PASS |
0.6225000 |
0.6700000 |
0.9315000 |
0.4861000 |
0.6677000 |
0.6727000 |
37.0 |
70.0 |
18 |
289.28 |
22.22 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
153907278 |
rs3835302,rs71794006 |
CCTGCTGCTG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.17 |
70.0 |
185 |
1000.00 |
2.33 |
37.30 |
0 |
44.32 |
0/1 |
| chr1 |
153909069 |
rs1043608 |
G |
C |
. |
PASS |
0.0991000 |
0.4063000 |
0.2847000 |
0.2913000 |
0.3303000 |
0.2628000 |
37.0 |
69.64 |
111 |
1000.00 |
6.40 |
50.45 |
0 |
50.45 |
0/1 |
| chr1 |
153913699 |
rs1110165 |
T |
G |
. |
PASS |
0.1150000 |
0.4092000 |
0.2837000 |
0.2922000 |
0.3303000 |
0.2674000 |
35.86 |
69.05 |
73 |
596.81 |
19.70 |
28.77 |
0 |
28.77 |
0/1 |
| chr1 |
153913770 |
rs2252508 |
A |
G |
. |
PASS |
0.7443000 |
0.6816000 |
0.9315000 |
0.4791000 |
0.6677000 |
0.7051000 |
36.6 |
70.0 |
69 |
1000.00 |
8.12 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
153920564 |
rs10559 |
A |
G |
. |
PASS |
0.0991000 |
0.4063000 |
0.2847000 |
0.2903000 |
0.3303000 |
0.2626000 |
35.34 |
70.0 |
118 |
1000.00 |
9.83 |
55.08 |
0 |
55.08 |
0/1 |
| chr1 |
153926078 |
rs11264680 |
T |
C |
. |
PASS |
0.0991000 |
0.4078000 |
0.2847000 |
0.2913000 |
0.3303000 |
0.2630000 |
36.6 |
70.0 |
57 |
1000.00 |
2.81 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
153927270 |
rs10908558 |
T |
C |
. |
PASS |
0.0893000 |
0.4049000 |
0.2847000 |
0.2903000 |
0.3292000 |
0.2596000 |
37.0 |
70.0 |
14 |
176.01 |
9.52 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
153941514 |
rs11264743 |
C |
T |
. |
PASS |
0.0832000 |
0.4107000 |
0.2837000 |
0.2853000 |
0.3262000 |
0.2570000 |
36.73 |
70.0 |
79 |
1000.00 |
5.81 |
55.70 |
0 |
55.70 |
0/1 |
| chr1 |
153954674 |
rs10908578 |
T |
C |
. |
PASS |
0.6558000 |
0.6801000 |
0.9296000 |
0.4891000 |
0.6759000 |
0.6847000 |
37.0 |
70.0 |
39 |
727.33 |
2.20 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
153954778 |
rs371625659 |
AAC |
A |
. |
PASS |
0.2466000 |
0.3156000 |
0.2103000 |
0.2356000 |
0.3200000 |
0.2610000 |
33.9 |
70.0 |
40 |
165.77 |
20.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
153958732 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
28 |
50.34 |
28.57 |
14.29 |
0 |
14.29 |
0/1 |
| chr1 |
153963995 |
rs140257179 |
A |
AAG |
. |
PASS |
0.1513000 |
0.4236000 |
0.2817000 |
0.2972000 |
0.3436000 |
0.2821000 |
37.0 |
70.0 |
36 |
626.95 |
4.44 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
153994647 |
rs11264875 |
C |
T |
. |
PASS |
0.1407000 |
0.4035000 |
0.2817000 |
0.2793000 |
0.3292000 |
0.2702000 |
37.0 |
70.0 |
71 |
1000.00 |
2.75 |
60.56 |
0 |
60.56 |
0/1 |
| chr1 |
154029450 |
rs11264964 |
G |
C |
. |
PASS |
0.1180000 |
0.4020000 |
0.2867000 |
0.2813000 |
0.3303000 |
0.2656000 |
37.0 |
70.0 |
18 |
201.59 |
26.98 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
154061855 |
rs2066135 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.03 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154108387 |
rs3001361 |
G |
A |
. |
PASS |
0.8858000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9690000 |
36.67 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154108501 |
rs16835819 |
T |
C |
. |
PASS |
0.0015000 |
0.0058000 |
0.0327000 |
0.0109000 |
0.0072000 |
0.0113820 |
37.0 |
70.0 |
18 |
289.28 |
11.11 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
154186918 |
rs12408458 |
G |
C |
. |
PASS |
0.0348000 |
0.4986000 |
0.4335000 |
0.3648000 |
0.4816000 |
0.3329000 |
37.0 |
70.0 |
62 |
821.02 |
18.32 |
40.32 |
0 |
40.32 |
0/1 |
| chr1 |
154218639 |
rs4040743,rs3838414 |
TTCAG |
T |
. |
PASS |
0.3200000 |
0.6210000 |
0.5248000 |
0.4115000 |
0.6769000 |
0.4910000 |
35.65 |
70.0 |
28 |
800.37 |
5.90 |
82.14 |
0 |
82.14 |
0/1 |
| chr1 |
154227239 |
rs1194604 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
255.41 |
3.57 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
154228287 |
rs1194603 |
T |
C |
. |
PASS |
0.8321000 |
0.7349000 |
0.9534000 |
0.5656000 |
0.7515000 |
0.7738000 |
33.57 |
70.0 |
14 |
193.76 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
154245142 |
rs11265425 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.67 |
34 |
487.60 |
16.86 |
44.12 |
0 |
44.12 |
0/1 |
| chr1 |
154245512 |
rs1194593 |
A |
G |
. |
PASS |
0.6619000 |
0.3545000 |
0.4742000 |
0.5527000 |
0.3037000 |
0.4896000 |
36.67 |
70.0 |
78 |
1000.00 |
18.80 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
154310048 |
rs1760795 |
C |
G |
. |
PASS |
0.1551000 |
0.4957000 |
0.6240000 |
0.4523000 |
0.5317000 |
0.4299000 |
36.7 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154317153 |
rs1194587 |
C |
T |
. |
PASS |
0.1203000 |
0.4899000 |
0.6240000 |
0.4523000 |
0.5317000 |
0.4199000 |
35.7 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154317418 |
rs1194586 |
T |
C |
. |
PASS |
0.1203000 |
0.4928000 |
0.6240000 |
0.4523000 |
0.5327000 |
0.4205000 |
36.14 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154321072 |
rs1194591 |
A |
G |
. |
PASS |
0.7882000 |
0.9726000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9401000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154387025 |
rs72698123 |
T |
C |
. |
PASS |
0.0371000 |
0.0130000 |
0.0476000 |
0.0070000 |
0.0072000 |
0.0240000 |
37.0 |
70.0 |
10 |
229.82 |
17.14 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
154401679 |
rs2228144 |
G |
A |
. |
PASS |
0.0484000 |
0.1023000 |
0.1042000 |
0.1789000 |
0.1738000 |
0.1178000 |
35.4 |
70.0 |
38 |
455.69 |
9.47 |
39.47 |
0 |
39.47 |
0/1 |
| chr1 |
154401972 |
rs6694817 |
T |
C |
. |
PASS |
0.6891000 |
0.6816000 |
0.4345000 |
0.5567000 |
0.4826000 |
0.5699000 |
36.56 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154407419 |
rs7518199 |
A |
C |
. |
PASS |
0.1944000 |
0.5490000 |
0.3323000 |
0.3678000 |
0.3037000 |
0.3275000 |
35.8 |
70.0 |
21 |
305.86 |
6.67 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
154407713 |
rs7521458 |
T |
C |
. |
PASS |
0.0893000 |
0.5331000 |
0.3442000 |
0.3688000 |
0.3037000 |
0.3001000 |
37.0 |
70.0 |
23 |
190.69 |
3.73 |
30.43 |
0 |
30.43 |
0/1 |
| chr1 |
154408340 |
rs4845371 |
T |
C |
. |
PASS |
0.6657000 |
0.6816000 |
0.4296000 |
0.5596000 |
0.5041000 |
0.5675000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154420778 |
rs7529229 |
T |
C |
. |
PASS |
0.6604000 |
0.5850000 |
0.3204000 |
0.3738000 |
0.3016000 |
0.4539000 |
37.0 |
70.0 |
13 |
220.79 |
0.00 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
154426947 |
rs4845374 |
T |
A |
. |
PASS |
0.2617000 |
0.1066000 |
0.1042000 |
0.1759000 |
0.1922000 |
0.1777000 |
35.8 |
70.0 |
33 |
401.09 |
7.46 |
39.39 |
0 |
45.45 |
0/1 |
| chr1 |
154426970 |
rs2228145 |
A |
C |
. |
PASS |
0.0870000 |
0.5360000 |
0.3234000 |
0.3598000 |
0.2996000 |
0.2931000 |
37.0 |
70.0 |
40 |
761.93 |
8.18 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
154437896 |
rs2229238 |
T |
C |
. |
PASS |
0.7731000 |
0.8631000 |
0.8065000 |
0.7803000 |
0.7894000 |
0.7969000 |
36.34 |
69.73 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154458932 |
rs4845632 |
A |
G |
. |
PASS |
0.6392000 |
0.9784000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9012000 |
36.74 |
69.57 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154459197 |
rs4845633 |
C |
G |
. |
PASS |
0.8563000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9611000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154474131 |
rs4845635 |
C |
G |
. |
PASS |
0.5635000 |
0.8790000 |
0.9117000 |
0.8241000 |
0.8057000 |
0.7770000 |
36.38 |
70.0 |
68 |
1000.00 |
6.94 |
57.35 |
0 |
57.35 |
0/1 |
| chr1 |
154474557 |
rs6703672 |
T |
C |
. |
PASS |
0.5711000 |
0.8790000 |
0.9117000 |
0.8241000 |
0.8057000 |
0.7790000 |
37.0 |
70.0 |
50 |
610.67 |
0.84 |
38.00 |
0 |
38.00 |
0/1 |
| chr1 |
154479657 |
rs10654618 |
C |
CAT |
. |
PASS |
0.6422000 |
0.9798000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9022000 |
36.57 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154479670 |
rs6664608 |
C |
T |
. |
PASS |
0.1180000 |
0.7089000 |
0.7401000 |
0.5934000 |
0.5777000 |
0.5104000 |
35.86 |
70.0 |
47 |
679.22 |
8.92 |
44.68 |
0 |
44.68 |
0/1 |
| chr1 |
154492702 |
rs10908842 |
G |
A |
. |
PASS |
0.1180000 |
0.7089000 |
0.7381000 |
0.5944000 |
0.5746000 |
0.5096000 |
37.0 |
70.0 |
14 |
217.79 |
28.57 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
154493721 |
rs6684225 |
T |
C |
. |
PASS |
0.6377000 |
0.9784000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9008000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154494082 |
rs4269769 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
142.13 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
154516477 |
rs12750774 |
G |
A |
. |
PASS |
0.0144000 |
0.2522000 |
0.0308000 |
0.3082000 |
0.1258000 |
0.1314000 |
37.0 |
70.0 |
130 |
1000.00 |
1.98 |
53.08 |
0 |
53.08 |
0/1 |
| chr1 |
154516571 |
rs6678164 |
T |
C |
. |
PASS |
0.6362000 |
0.9784000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9004000 |
36.83 |
70.0 |
141 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154523562 |
rs9427082 |
G |
T |
. |
PASS |
0.0212000 |
0.1499000 |
0.0982000 |
0.1730000 |
0.1973000 |
0.1194000 |
37.0 |
70.0 |
19 |
240.35 |
11.84 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
154523588 |
rs10908849 |
T |
G |
. |
PASS |
0.4766000 |
0.9539000 |
0.9990000 |
0.9871000 |
0.9969000 |
0.8520000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154524973 |
rs12144146 |
A |
G |
. |
PASS |
0.0144000 |
0.2522000 |
0.0169000 |
0.3052000 |
0.1319000 |
0.1292000 |
37.0 |
69.35 |
70 |
1000.00 |
1.84 |
44.29 |
0 |
44.29 |
0/1 |
| chr1 |
154528053 |
rs56047170 |
G |
A |
. |
PASS |
0.2587000 |
0.1643000 |
0.0982000 |
0.1640000 |
0.1820000 |
0.1793000 |
35.93 |
70.0 |
69 |
1000.00 |
1.93 |
65.22 |
0 |
65.22 |
0/1 |
| chr1 |
154528086 |
rs4078519 |
T |
C |
. |
PASS |
0.4554000 |
0.9625000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.8504000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154531090 |
rs368389808,rs377524998 |
TCCG |
T |
. |
PASS |
0.7216000 |
0.8429000 |
0.9008000 |
0.8360000 |
0.8149000 |
0.8157000 |
34.62 |
62.0 |
35 |
167.77 |
80.00 |
22.86 |
0 |
22.86 |
0/1 |
| chr1 |
154540468 |
rs2280781 |
C |
T |
. |
PASS |
0.0832000 |
0.1196000 |
0.1161000 |
0.0974000 |
0.1708000 |
0.1148000 |
37.0 |
70.0 |
30 |
670.87 |
2.46 |
63.33 |
0 |
63.33 |
0/1 |
| chr1 |
154544651 |
rs4845378 |
G |
T |
. |
PASS |
0.0507000 |
0.1138000 |
0.1280000 |
0.0984000 |
0.1810000 |
0.1100000 |
36.54 |
70.0 |
48 |
892.92 |
8.65 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
154557685 |
rs9427094 |
C |
T |
. |
PASS |
0.1997000 |
0.4769000 |
0.4990000 |
0.4712000 |
0.3834000 |
0.3888000 |
36.04 |
70.0 |
57 |
816.20 |
11.23 |
43.86 |
0 |
43.86 |
0/1 |
| chr1 |
154562624 |
rs201932953 |
CG |
C |
. |
PASS |
0.4826000 |
0.5447000 |
0.5823000 |
0.5427000 |
0.5419000 |
0.5349000 |
36.01 |
69.75 |
80 |
1000.00 |
16.54 |
32.50 |
0 |
100.00 |
0/1 |
| chr1 |
154562625 |
rs7532276 |
G |
C |
. |
PASS |
0.5023000 |
0.4553000 |
0.4177000 |
0.4573000 |
0.4581000 |
0.4611000 |
36.01 |
69.75 |
80 |
1000.00 |
7.96 |
67.50 |
0 |
100.00 |
0/1 |
| chr1 |
154573967 |
rs2229857 |
T |
C |
. |
PASS |
0.3691000 |
0.7579000 |
0.6687000 |
0.6730000 |
0.7699000 |
0.6226000 |
36.64 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154574820 |
rs1466731 |
T |
C |
. |
PASS |
0.9856000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9962000 |
36.45 |
70.0 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154575040 |
rs1802645 |
C |
T |
. |
PASS |
0.9887000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9970000 |
36.45 |
70.0 |
110 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154580458 |
rs58655370 |
C |
A |
. |
PASS |
0.4834000 |
0.2968000 |
0.1369000 |
0.1909000 |
0.3589000 |
0.3047000 |
35.98 |
70.0 |
113 |
1000.00 |
9.21 |
52.21 |
0 |
52.21 |
0/1 |
| chr1 |
154744807 |
rs1051614 |
C |
G |
. |
PASS |
0.4493000 |
0.4625000 |
0.5198000 |
0.6252000 |
0.6268000 |
0.5353000 |
36.76 |
70.0 |
102 |
1000.00 |
3.92 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
154744852 |
rs1131820 |
A |
G |
. |
PASS |
0.5930000 |
0.8401000 |
0.9831000 |
0.7445000 |
0.8129000 |
0.7792000 |
37.0 |
70.0 |
66 |
1000.00 |
1.13 |
53.03 |
0 |
53.03 |
0/1 |
| chr1 |
154810030 |
rs1218578 |
A |
G |
. |
PASS |
0.3949000 |
0.5259000 |
0.6260000 |
0.5169000 |
0.5389000 |
0.5122000 |
36.89 |
70.0 |
113 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154832290 |
rs1061122 |
C |
T |
. |
PASS |
0.4592000 |
0.1571000 |
0.0159000 |
0.2306000 |
0.1135000 |
0.2147000 |
37.0 |
70.0 |
29 |
506.80 |
11.03 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
154832304 |
rs4845397 |
T |
C |
. |
PASS |
0.4070000 |
0.7939000 |
0.9841000 |
0.7028000 |
0.8221000 |
0.7173000 |
37.0 |
70.0 |
22 |
402.55 |
13.64 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
154832322 |
rs1218586 |
A |
C |
. |
PASS |
0.9251000 |
0.9683000 |
1.0000000 |
0.9602000 |
0.9489000 |
0.9579000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154842199 |
. |
G |
GGCTGCTGCTGCTGCT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
69.96 |
136 |
1000.00 |
0.26 |
78.68 |
0 |
96.32 |
0/1 |
| chr1 |
154919080 |
rs2061690 |
C |
T |
. |
PASS |
0.1498000 |
0.6297000 |
0.8958000 |
0.4334000 |
0.6237000 |
0.5160000 |
36.54 |
70.0 |
45 |
906.10 |
6.67 |
57.78 |
0 |
57.78 |
0/1 |
| chr1 |
154934665 |
rs7528548 |
C |
T |
. |
PASS |
0.0885000 |
0.0173000 |
0.0020000 |
0.0199000 |
0.0521000 |
0.0403000 |
35.96 |
69.13 |
60 |
723.63 |
1.74 |
38.33 |
0 |
38.33 |
0/1 |
| chr1 |
154938235 |
rs1131397 |
G |
C |
. |
PASS |
0.5061000 |
0.0576000 |
0.0020000 |
0.0278000 |
0.0552000 |
0.1583000 |
37.0 |
70.0 |
76 |
1000.00 |
8.36 |
44.74 |
0 |
44.74 |
0/1 |
| chr1 |
154938662 |
rs8191979 |
T |
C |
. |
PASS |
0.1505000 |
0.0288000 |
0.0020000 |
0.0278000 |
0.0552000 |
0.0605000 |
36.62 |
70.0 |
121 |
1000.00 |
4.46 |
52.07 |
0 |
52.07 |
0/1 |
| chr1 |
154983539 |
rs6686021 |
C |
T |
. |
PASS |
0.2345000 |
0.3646000 |
0.7421000 |
0.4245000 |
0.5695000 |
0.4583000 |
37.0 |
70.0 |
27 |
679.90 |
5.85 |
70.37 |
0 |
70.37 |
0/1 |
| chr1 |
154987526 |
rs11264295 |
C |
T |
. |
PASS |
0.4592000 |
0.6671000 |
0.9058000 |
0.4513000 |
0.6718000 |
0.6178000 |
36.37 |
70.0 |
38 |
634.78 |
15.79 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
154988957 |
rs2242195 |
A |
G |
. |
PASS |
0.4811000 |
0.7478000 |
0.9127000 |
0.5785000 |
0.7321000 |
0.6735000 |
36.88 |
70.0 |
104 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
154995503 |
rs2242193 |
G |
A |
. |
PASS |
0.4569000 |
0.6686000 |
0.9058000 |
0.4503000 |
0.6810000 |
0.6190000 |
37.0 |
70.0 |
24 |
438.31 |
2.56 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
154995920 |
rs72702247 |
G |
A |
. |
PASS |
0.0000000 |
0.0187000 |
0.0000000 |
0.0139000 |
0.0235000 |
0.0099840 |
37.0 |
70.0 |
66 |
896.67 |
2.02 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
155001929 |
rs10908452 |
T |
C |
. |
PASS |
0.4342000 |
0.5908000 |
0.8790000 |
0.3618000 |
0.6196000 |
0.5671000 |
37.0 |
70.0 |
20 |
325.03 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
155006091 |
rs10908453 |
A |
G |
. |
PASS |
0.5416000 |
0.6052000 |
0.8810000 |
0.3608000 |
0.6258000 |
0.5988000 |
37.0 |
70.0 |
88 |
1000.00 |
1.11 |
55.68 |
0 |
55.68 |
0/1 |
| chr1 |
155006999 |
rs6680600 |
C |
T |
. |
PASS |
0.4266000 |
0.5922000 |
0.8819000 |
0.3579000 |
0.6227000 |
0.5657000 |
36.44 |
70.0 |
157 |
1000.00 |
7.01 |
40.76 |
0 |
40.76 |
0/1 |
| chr1 |
155007293 |
rs4845404 |
C |
T |
. |
PASS |
0.4266000 |
0.5922000 |
0.8819000 |
0.3588000 |
0.6227000 |
0.5659000 |
36.33 |
70.0 |
32 |
611.07 |
5.56 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
155007302 |
rs4845405 |
C |
A |
. |
PASS |
0.4312000 |
0.5922000 |
0.8819000 |
0.3579000 |
0.6227000 |
0.5669000 |
35.67 |
70.0 |
32 |
594.91 |
10.42 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
155019710 |
rs11264300 |
A |
C |
. |
PASS |
0.3858000 |
0.5865000 |
0.8849000 |
0.3569000 |
0.6227000 |
0.5545000 |
37.0 |
70.0 |
84 |
1000.00 |
0.48 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
155026942 |
rs6427128 |
A |
C |
. |
PASS |
0.8676000 |
0.9308000 |
0.9901000 |
0.8439000 |
0.8967000 |
0.9020000 |
37.0 |
70.0 |
101 |
1000.00 |
2.39 |
38.61 |
0 |
38.61 |
0/1 |
| chr1 |
155031376 |
rs12023499 |
C |
T |
. |
PASS |
0.2988000 |
0.4870000 |
0.8661000 |
0.1918000 |
0.4714000 |
0.4513000 |
37.0 |
70.0 |
16 |
378.84 |
0.00 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
155033308 |
rs11589479 |
G |
A |
. |
PASS |
0.0045000 |
0.0951000 |
0.0089000 |
0.1819000 |
0.1145000 |
0.0751000 |
35.71 |
70.0 |
47 |
959.60 |
3.65 |
59.57 |
0 |
59.57 |
0/1 |
| chr1 |
155033317 |
rs11264304 |
T |
C |
. |
PASS |
0.4652000 |
0.7666000 |
0.9276000 |
0.6799000 |
0.7393000 |
0.6967000 |
37.0 |
70.0 |
48 |
616.69 |
3.07 |
39.58 |
0 |
39.58 |
0/1 |
| chr1 |
155057499 |
rs3766918 |
A |
G |
. |
PASS |
0.7073000 |
0.7089000 |
0.9177000 |
0.5815000 |
0.5706000 |
0.6979000 |
37.0 |
70.0 |
38 |
521.47 |
4.61 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
155106054 |
rs4390169 |
A |
G |
. |
PASS |
0.1513000 |
0.3141000 |
0.1954000 |
0.5219000 |
0.4714000 |
0.3197000 |
36.31 |
70.0 |
52 |
1000.00 |
0.77 |
67.31 |
0 |
67.31 |
0/1 |
| chr1 |
155106227 |
rs4745 |
A |
T |
. |
PASS |
0.1520000 |
0.3141000 |
0.1964000 |
0.5209000 |
0.4714000 |
0.3199000 |
36.5 |
70.0 |
53 |
794.33 |
6.45 |
45.28 |
0 |
45.28 |
0/1 |
| chr1 |
155106550 |
rs9297 |
A |
G |
. |
PASS |
0.2352000 |
0.5937000 |
0.8046000 |
0.4105000 |
0.4888000 |
0.4842000 |
36.56 |
70.0 |
97 |
1000.00 |
3.34 |
56.70 |
0 |
56.70 |
0/1 |
| chr1 |
155108287 |
rs11264333 |
G |
A |
. |
PASS |
0.3094000 |
0.5951000 |
0.8046000 |
0.4095000 |
0.4877000 |
0.5036000 |
37.0 |
70.0 |
14 |
259.56 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
155142210 |
rs4421576 |
A |
G |
. |
PASS |
0.6498000 |
0.6657000 |
0.7897000 |
0.4950000 |
0.5297000 |
0.6256000 |
37.0 |
70.0 |
35 |
655.82 |
2.41 |
54.29 |
0 |
54.29 |
0/1 |
| chr1 |
155142229 |
rs4276914 |
G |
A |
. |
PASS |
0.6498000 |
0.6657000 |
0.7897000 |
0.4940000 |
0.5297000 |
0.6254000 |
36.14 |
70.0 |
49 |
965.60 |
13.27 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
155149718 |
rs3814316 |
G |
A |
. |
PASS |
0.2194000 |
0.5706000 |
0.7629000 |
0.3579000 |
0.4274000 |
0.4459000 |
35.11 |
70.0 |
57 |
553.58 |
3.51 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
155161168 |
rs12743084 |
C |
G |
. |
PASS |
0.6104000 |
0.7147000 |
0.7619000 |
0.5477000 |
0.5481000 |
0.6306000 |
34.82 |
69.23 |
45 |
490.30 |
11.94 |
35.56 |
0 |
48.89 |
0/1 |
| chr1 |
155161205 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.57 |
65.64 |
55 |
334.59 |
2.34 |
25.45 |
0 |
25.45 |
0/1 |
| chr1 |
155161209 |
rs12728535 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.47 |
66.05 |
48 |
386.89 |
0.60 |
29.17 |
0 |
39.58 |
0/1 |
| chr1 |
155161234 |
rs61811943 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
64.93 |
146 |
114.47 |
16.62 |
10.27 |
0 |
10.27 |
0/1 |
| chr1 |
155161236 |
rs61811944 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
65.0 |
146 |
96.73 |
10.37 |
9.59 |
0 |
9.59 |
0/1 |
| chr1 |
155161265 |
rs201443032 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.36 |
65.86 |
165 |
102.37 |
37.58 |
9.09 |
0 |
13.33 |
0/1 |
| chr1 |
155161294 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.8 |
60.73 |
158 |
66.35 |
19.41 |
9.49 |
0 |
9.49 |
0/1 |
| chr1 |
155161323 |
. |
TGG |
TTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.57 |
62.86 |
99 |
71.84 |
8.08 |
9.09 |
0 |
21.21 |
0/1 |
| chr1 |
155161323 |
. |
TGG |
TGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.57 |
62.86 |
99 |
71.84 |
28.03 |
8.08 |
0 |
21.21 |
0/1 |
| chr1 |
155161329 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.4 |
46.8 |
77 |
113.32 |
13.51 |
12.99 |
0 |
12.99 |
0/1 |
| chr1 |
155162067 |
rs4072037 |
C |
T |
. |
PASS |
0.6044000 |
0.7133000 |
0.7619000 |
0.5477000 |
0.5481000 |
0.6288000 |
36.54 |
70.0 |
60 |
860.95 |
1.28 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
155175892 |
rs914615 |
A |
G |
. |
PASS |
0.6180000 |
0.7104000 |
0.7758000 |
0.5447000 |
0.5511000 |
0.6348000 |
36.14 |
70.0 |
23 |
471.08 |
2.48 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
155178782 |
rs760077 |
A |
T |
. |
PASS |
0.6331000 |
0.7608000 |
0.7738000 |
0.6054000 |
0.5982000 |
0.6667000 |
37.0 |
70.0 |
49 |
818.39 |
2.04 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
155181843 |
rs2974935 |
G |
T |
. |
PASS |
0.6112000 |
0.6859000 |
0.7609000 |
0.5239000 |
0.5460000 |
0.6214000 |
37.0 |
69.45 |
44 |
749.90 |
4.55 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
155182164 |
rs2075570 |
C |
T |
. |
PASS |
0.6135000 |
0.6859000 |
0.7609000 |
0.5249000 |
0.5481000 |
0.6226000 |
37.0 |
61.93 |
33 |
452.99 |
9.52 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
155184975 |
rs140081212 |
A |
G |
. |
PASS |
0.6309000 |
0.7608000 |
0.7669000 |
0.6044000 |
0.5982000 |
0.6645000 |
37.0 |
69.52 |
49 |
780.78 |
3.90 |
46.94 |
0 |
46.94 |
0/1 |
| chr1 |
155186729 |
rs28445596 |
T |
C |
. |
PASS |
0.6180000 |
0.6873000 |
0.7629000 |
0.5229000 |
0.5470000 |
0.6238000 |
36.53 |
69.2 |
85 |
1000.00 |
0.78 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
155186742 |
rs1057941 |
G |
A |
. |
PASS |
0.1725000 |
0.5994000 |
0.7411000 |
0.3917000 |
0.4499000 |
0.4443000 |
36.25 |
69.12 |
78 |
1000.00 |
1.28 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
155202689 |
rs10796940 |
A |
C |
. |
PASS |
0.5461000 |
0.3242000 |
0.6944000 |
0.3350000 |
0.3763000 |
0.4696000 |
37.0 |
70.0 |
39 |
597.86 |
5.98 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
155203060 |
rs56310840 |
G |
A |
. |
PASS |
0.5348000 |
0.3314000 |
0.6944000 |
0.3410000 |
0.3753000 |
0.4687000 |
37.0 |
67.13 |
28 |
509.81 |
8.57 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
155205170 |
rs143255568 |
A |
G |
. |
PASS |
0.0008000 |
0.1167000 |
0.0188000 |
0.0109000 |
0.0143000 |
0.0252000 |
37.0 |
68.83 |
18 |
163.98 |
55.56 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
155205669 |
rs28559737 |
G |
T |
. |
PASS |
0.7912000 |
0.9798000 |
0.9990000 |
0.9960000 |
0.9990000 |
0.9409000 |
36.66 |
69.17 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155209360 |
rs2075569 |
C |
T |
. |
PASS |
0.6195000 |
0.3300000 |
0.6984000 |
0.3360000 |
0.3722000 |
0.4900000 |
35.71 |
70.0 |
66 |
902.41 |
9.31 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
155230131 |
rs1142287 |
C |
T |
. |
PASS |
0.5416000 |
0.3199000 |
0.6944000 |
0.2753000 |
0.3558000 |
0.4519000 |
36.79 |
70.0 |
116 |
1000.00 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
155231545 |
rs2242576 |
T |
G |
. |
PASS |
0.6657000 |
0.3285000 |
0.6984000 |
0.2753000 |
0.3558000 |
0.4866000 |
36.59 |
70.0 |
53 |
1000.00 |
17.96 |
54.72 |
0 |
54.72 |
0/1 |
| chr1 |
155232074 |
rs1046188 |
C |
T |
. |
PASS |
0.5416000 |
0.3199000 |
0.6925000 |
0.2753000 |
0.3558000 |
0.4515000 |
37.0 |
70.0 |
11 |
101.50 |
36.36 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
155247707 |
rs12749306 |
G |
T |
. |
PASS |
0.3011000 |
0.3069000 |
0.6944000 |
0.2813000 |
0.3344000 |
0.3836000 |
37.0 |
70.0 |
50 |
773.61 |
11.65 |
46.00 |
0 |
46.00 |
0/1 |
| chr1 |
155258752 |
rs3814319 |
G |
A |
. |
PASS |
0.6815000 |
0.3689000 |
0.6935000 |
0.3300000 |
0.3763000 |
0.5104000 |
36.23 |
70.0 |
155 |
1000.00 |
0.63 |
50.32 |
0 |
50.32 |
0/1 |
| chr1 |
155258756 |
rs3814318 |
C |
T |
. |
PASS |
0.4864000 |
0.3271000 |
0.6905000 |
0.2803000 |
0.3538000 |
0.4381000 |
37.0 |
70.0 |
155 |
1000.00 |
0.66 |
50.32 |
0 |
50.32 |
0/1 |
| chr1 |
155260350 |
rs1052177 |
A |
G |
. |
PASS |
0.4879000 |
0.3271000 |
0.6905000 |
0.2803000 |
0.3548000 |
0.4387000 |
36.08 |
69.23 |
49 |
882.06 |
1.57 |
53.06 |
0 |
53.06 |
0/1 |
| chr1 |
155260383 |
rs1052176 |
G |
T |
. |
PASS |
0.4879000 |
0.3271000 |
0.6895000 |
0.2803000 |
0.3548000 |
0.4385000 |
37.0 |
69.39 |
66 |
1000.00 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
155265177 |
rs2071053 |
A |
G |
. |
PASS |
0.6293000 |
0.3429000 |
0.6905000 |
0.2833000 |
0.3558000 |
0.4790000 |
35.0 |
70.0 |
30 |
593.08 |
24.44 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
155279482 |
rs2297480 |
T |
G |
. |
PASS |
0.2821000 |
0.3055000 |
0.6895000 |
0.2634000 |
0.3119000 |
0.3694000 |
35.29 |
70.0 |
18 |
189.58 |
4.76 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
155289545 |
rs11264361 |
T |
G |
. |
PASS |
0.2133000 |
0.2954000 |
0.7054000 |
0.2644000 |
0.3067000 |
0.3522000 |
36.6 |
70.0 |
69 |
996.79 |
6.09 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
155291253 |
rs72704152 |
C |
T |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0139000 |
0.0409000 |
0.0111820 |
35.85 |
70.0 |
120 |
1000.00 |
1.03 |
60.83 |
0 |
60.83 |
0/1 |
| chr1 |
155291431 |
rs12741581 |
C |
T |
. |
PASS |
0.0038000 |
0.0360000 |
0.0010000 |
0.0497000 |
0.0184000 |
0.0197680 |
35.0 |
70.0 |
20 |
384.56 |
3.33 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
155294274 |
rs914616 |
A |
G |
. |
PASS |
0.8132000 |
0.9827000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9483000 |
36.5 |
69.79 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155294772 |
rs4971075 |
A |
G |
. |
PASS |
0.7057000 |
0.9784000 |
0.9990000 |
1.0000000 |
0.9806000 |
0.9153000 |
35.38 |
70.0 |
53 |
1000.00 |
1.60 |
98.11 |
0 |
98.11 |
1/1 |
| chr1 |
155311658 |
rs80187273 |
C |
T |
. |
PASS |
0.0038000 |
0.0331000 |
0.0010000 |
0.0457000 |
0.0184000 |
0.0185700 |
36.2 |
70.0 |
31 |
488.77 |
1.29 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
155313047 |
rs4971051 |
T |
C |
. |
PASS |
0.7073000 |
0.9784000 |
0.9990000 |
1.0000000 |
0.9806000 |
0.9157000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155327091 |
rs41264233 |
G |
A |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0149000 |
0.0419000 |
0.0115820 |
37.0 |
70.0 |
44 |
670.50 |
5.45 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
155408635 |
rs4971053 |
T |
C |
. |
PASS |
0.8147000 |
0.9827000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9487000 |
36.22 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155429490 |
rs10796946 |
A |
T |
. |
PASS |
0.1422000 |
0.3069000 |
0.7063000 |
0.2763000 |
0.3139000 |
0.3391000 |
37.0 |
70.0 |
21 |
401.41 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
155429725 |
rs10908466 |
A |
C |
. |
PASS |
0.1422000 |
0.3069000 |
0.7063000 |
0.2763000 |
0.3139000 |
0.3391000 |
36.57 |
70.0 |
42 |
994.52 |
4.76 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
155532316 |
rs12403379 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
69.84 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155532325 |
rs12403380 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
69.83 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155532332 |
rs34869594 |
T |
C |
. |
PASS |
0.9592000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9888000 |
37.0 |
69.83 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155532341 |
rs61812107 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
69.82 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155581311 |
rs141265144 |
T |
C |
. |
PASS |
0.1309000 |
0.2983000 |
0.6835000 |
0.2734000 |
0.3221000 |
0.3313000 |
37.0 |
59.67 |
55 |
929.78 |
9.16 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
155618415 |
rs5777949 |
CT |
C |
. |
PASS |
0.6649000 |
0.9798000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9085000 |
36.6 |
68.64 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155630752 |
rs3738590 |
A |
G |
. |
PASS |
0.1581000 |
0.3026000 |
0.6806000 |
0.2744000 |
0.3211000 |
0.3385000 |
37.0 |
70.0 |
28 |
509.80 |
16.67 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
155658085 |
rs2666826 |
T |
C |
. |
PASS |
0.8041000 |
0.3631000 |
0.6855000 |
0.2972000 |
0.3650000 |
0.5315000 |
36.51 |
69.98 |
108 |
1000.00 |
16.52 |
45.37 |
0 |
45.37 |
0/1 |
| chr1 |
155658341 |
rs678157 |
T |
C |
. |
PASS |
0.6664000 |
0.3271000 |
0.6835000 |
0.2435000 |
0.3108000 |
0.4685000 |
37.0 |
70.0 |
11 |
226.81 |
20.78 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
155715641 |
rs11264409 |
G |
A |
. |
PASS |
0.2284000 |
0.3184000 |
0.6746000 |
0.2654000 |
0.2863000 |
0.3494000 |
37.0 |
63.5 |
15 |
89.46 |
6.67 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
155721911 |
rs201235180 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0070000 |
0.0225000 |
0.0057907 |
36.62 |
65.56 |
61 |
1000.00 |
1.33 |
52.46 |
0 |
52.46 |
0/1 |
| chr1 |
155733358 |
rs72706143 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
25 |
268.22 |
27.56 |
36.00 |
0 |
36.00 |
0/1 |
| chr1 |
155735012 |
rs2297775 |
T |
C |
. |
PASS |
0.1815000 |
0.3256000 |
0.6865000 |
0.2972000 |
0.3241000 |
0.3542000 |
37.0 |
70.0 |
46 |
664.48 |
5.65 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
155737385 |
rs849712 |
C |
T |
. |
PASS |
0.7368000 |
0.9827000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9279000 |
37.0 |
66.56 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155753676 |
rs822019 |
A |
G |
. |
PASS |
0.4380000 |
0.9337000 |
0.9970000 |
0.9443000 |
0.9448000 |
0.8199000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155755097 |
rs822021 |
G |
A |
. |
PASS |
0.7383000 |
0.9827000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9285000 |
35.95 |
69.75 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155755239 |
rs822022 |
T |
C |
. |
PASS |
0.5802000 |
0.9395000 |
0.9980000 |
0.9443000 |
0.9652000 |
0.8624000 |
36.2 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155785578 |
rs375366111,rs148569012 |
CAACT |
C |
. |
PASS |
0.5809000 |
0.9395000 |
0.9980000 |
0.9443000 |
0.9652000 |
0.8626000 |
35.8 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155829511 |
rs3820594 |
C |
T |
. |
PASS |
0.1672000 |
0.3199000 |
0.6915000 |
0.2883000 |
0.3241000 |
0.3488000 |
36.37 |
70.0 |
51 |
595.65 |
1.86 |
37.25 |
0 |
37.25 |
0/1 |
| chr1 |
155837865 |
rs822522 |
G |
C |
. |
PASS |
0.8374000 |
0.9827000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9547000 |
36.52 |
69.47 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155838267 |
rs822521 |
T |
C |
. |
PASS |
0.7466000 |
0.9856000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9311000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155850558 |
rs822508 |
T |
C |
. |
PASS |
0.2209000 |
0.6167000 |
0.1845000 |
0.6581000 |
0.6186000 |
0.4339000 |
35.67 |
70.0 |
15 |
286.31 |
4.44 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
155870416 |
rs1749409 |
G |
A |
. |
PASS |
0.4327000 |
0.9078000 |
0.9405000 |
0.8926000 |
0.8763000 |
0.7798000 |
36.51 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155880159 |
rs867549 |
T |
C |
. |
PASS |
0.2965000 |
0.3084000 |
0.7579000 |
0.2376000 |
0.3016000 |
0.3802000 |
36.08 |
70.0 |
18 |
444.35 |
10.26 |
72.22 |
0 |
72.22 |
0/1 |
| chr1 |
155880391 |
rs867550 |
T |
C |
. |
PASS |
0.2708000 |
0.3069000 |
0.7619000 |
0.2376000 |
0.3016000 |
0.3740000 |
35.59 |
70.0 |
33 |
554.28 |
3.57 |
51.52 |
0 |
51.52 |
0/1 |
| chr1 |
155880573 |
rs493446 |
C |
G |
. |
PASS |
0.4334000 |
0.9078000 |
0.9405000 |
0.8926000 |
0.8763000 |
0.7800000 |
37.0 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155880760 |
rs5777961,rs79437610 |
C |
CA |
. |
PASS |
0.3472000 |
0.9035000 |
0.9405000 |
0.8917000 |
0.8691000 |
0.7550000 |
35.06 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155899020 |
rs539602 |
A |
T |
. |
PASS |
0.1369000 |
0.5994000 |
0.1786000 |
0.6551000 |
0.5746000 |
0.3990000 |
36.33 |
70.0 |
34 |
600.90 |
1.31 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
155903408 |
rs4661151 |
C |
T |
. |
PASS |
0.1369000 |
0.5994000 |
0.1786000 |
0.6551000 |
0.5746000 |
0.3990000 |
37.0 |
70.0 |
54 |
765.72 |
2.90 |
42.59 |
0 |
42.59 |
0/1 |
| chr1 |
155904177 |
rs2275079 |
T |
C |
. |
PASS |
0.4334000 |
0.9063000 |
0.9395000 |
0.8926000 |
0.8763000 |
0.7796000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155912486 |
rs2152051 |
T |
C |
. |
PASS |
0.7383000 |
0.9813000 |
0.9990000 |
1.0000000 |
0.9796000 |
0.9241000 |
36.56 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155917880 |
rs1010033 |
T |
A |
. |
PASS |
0.4070000 |
0.9078000 |
0.9405000 |
0.8936000 |
0.8763000 |
0.7732000 |
36.0 |
68.33 |
12 |
449.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155927752 |
rs2364403 |
G |
A |
. |
PASS |
0.2723000 |
0.2882000 |
0.7827000 |
0.1819000 |
0.2996000 |
0.3644000 |
34.82 |
68.18 |
16 |
354.83 |
20.45 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
155928232 |
rs2364404 |
T |
C |
. |
PASS |
0.4100000 |
0.9078000 |
0.9405000 |
0.8936000 |
0.8763000 |
0.7740000 |
36.67 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155928242 |
rs2886069 |
C |
T |
. |
PASS |
0.4334000 |
0.9092000 |
0.9405000 |
0.8936000 |
0.8763000 |
0.7804000 |
36.6 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
155935244 |
rs2297649 |
C |
A |
. |
PASS |
0.2103000 |
0.3055000 |
0.7877000 |
0.2366000 |
0.3047000 |
0.3634000 |
36.0 |
70.0 |
24 |
380.38 |
16.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
155981489 |
rs1475766 |
C |
G |
. |
PASS |
0.3094000 |
0.5375000 |
0.1498000 |
0.6054000 |
0.5583000 |
0.4169000 |
35.29 |
70.0 |
17 |
192.59 |
11.76 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
156011444 |
rs2297792 |
T |
C |
. |
PASS |
0.3782000 |
0.5461000 |
0.1438000 |
0.6014000 |
0.5521000 |
0.4331000 |
37.0 |
69.24 |
86 |
1000.00 |
0.31 |
43.02 |
0 |
43.02 |
0/1 |
| chr1 |
156104292 |
rs12117552 |
G |
A |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0089000 |
0.0297000 |
0.0079872 |
36.56 |
70.0 |
57 |
911.75 |
12.87 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
156107534 |
rs4641 |
C |
T |
. |
PASS |
0.0658000 |
0.3012000 |
0.2738000 |
0.2247000 |
0.3119000 |
0.2202000 |
36.49 |
70.0 |
69 |
1000.00 |
1.67 |
68.12 |
0 |
68.12 |
0/1 |
| chr1 |
156128220 |
rs56271605 |
T |
C |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0005990 |
37.0 |
70.0 |
63 |
989.25 |
7.66 |
46.03 |
0 |
46.03 |
0/1 |
| chr1 |
156131095 |
rs201004039 |
C |
CGGGGCGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
10 |
358.64 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156133038 |
rs7555253 |
T |
C |
. |
PASS |
0.5825000 |
0.4179000 |
0.2907000 |
0.4066000 |
0.4356000 |
0.4369000 |
37.0 |
70.0 |
11 |
268.58 |
0.00 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
156146218 |
rs12401573 |
C |
T |
. |
PASS |
0.3949000 |
0.5231000 |
0.2321000 |
0.6044000 |
0.4407000 |
0.4309000 |
35.29 |
69.43 |
66 |
1000.00 |
4.59 |
53.03 |
0 |
53.03 |
0/1 |
| chr1 |
156169610 |
rs2072499 |
A |
G |
. |
PASS |
0.6740000 |
0.3271000 |
0.1369000 |
0.3618000 |
0.2996000 |
0.3820000 |
35.95 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156182710 |
rs2241107 |
T |
C |
. |
PASS |
0.6725000 |
0.3271000 |
0.1379000 |
0.3618000 |
0.2996000 |
0.3818000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156186369 |
rs11264459 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
68.33 |
12 |
380.04 |
0.00 |
16.67 |
0 |
100.00 |
0/1 |
| chr1 |
156186369 |
rs11264459 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
68.33 |
12 |
380.04 |
0.00 |
83.33 |
0 |
100.00 |
0/1 |
| chr1 |
156195482 |
rs72708297 |
G |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0040000 |
0.0000000 |
0.0007987 |
36.57 |
70.0 |
60 |
940.34 |
13.33 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
156202173 |
rs1052053 |
A |
G |
. |
PASS |
0.7065000 |
0.3660000 |
0.3313000 |
0.3708000 |
0.3528000 |
0.4473000 |
36.8 |
70.0 |
123 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156206121 |
rs1052067 |
G |
A |
. |
PASS |
0.1127000 |
0.2190000 |
0.2073000 |
0.2773000 |
0.1851000 |
0.1937000 |
36.33 |
70.0 |
99 |
1000.00 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
156255833 |
rs2842883 |
G |
C |
. |
PASS |
0.9236000 |
0.9957000 |
1.0000000 |
0.9940000 |
1.0000000 |
0.9780000 |
36.47 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156264648 |
rs1570805 |
C |
T |
. |
PASS |
0.0113000 |
0.1254000 |
0.0466000 |
0.1074000 |
0.0348000 |
0.0581000 |
37.0 |
70.0 |
49 |
446.60 |
0.54 |
30.61 |
0 |
30.61 |
0/1 |
| chr1 |
156314497 |
rs41265043 |
C |
T |
. |
PASS |
0.0015000 |
0.0086000 |
0.0000000 |
0.0229000 |
0.0092000 |
0.0079872 |
34.74 |
70.0 |
106 |
1000.00 |
1.89 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
156347131 |
rs2245623 |
G |
A |
. |
PASS |
0.1936000 |
0.2781000 |
0.1012000 |
0.4563000 |
0.3528000 |
0.2706000 |
36.33 |
70.0 |
96 |
1000.00 |
0.69 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
156347309 |
rs56353055 |
A |
G |
. |
PASS |
0.1293000 |
0.0461000 |
0.0169000 |
0.0666000 |
0.0286000 |
0.0629000 |
36.57 |
70.0 |
79 |
887.32 |
12.57 |
35.44 |
0 |
35.44 |
0/1 |
| chr1 |
156351066 |
rs942679 |
C |
A |
. |
PASS |
0.0507000 |
0.2651000 |
0.1111000 |
0.4553000 |
0.3517000 |
0.2326000 |
37.0 |
70.0 |
19 |
198.58 |
16.54 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
156351699 |
rs3748569 |
G |
A |
. |
PASS |
0.5719000 |
0.6037000 |
0.7014000 |
0.4095000 |
0.4438000 |
0.5447000 |
37.0 |
70.0 |
71 |
1000.00 |
1.41 |
47.89 |
0 |
47.89 |
0/1 |
| chr1 |
156351792 |
rs3748568 |
G |
A |
. |
PASS |
0.5431000 |
0.5490000 |
0.7480000 |
0.4016000 |
0.4417000 |
0.5369000 |
37.0 |
70.0 |
69 |
1000.00 |
1.57 |
50.72 |
0 |
50.72 |
0/1 |
| chr1 |
156354293 |
rs6668731 |
A |
G |
. |
PASS |
0.6074000 |
0.2911000 |
0.5446000 |
0.2396000 |
0.3313000 |
0.4231000 |
37.0 |
70.0 |
28 |
384.49 |
2.38 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
156354347 |
rs11303415 |
TC |
T |
. |
PASS |
0.6059000 |
0.2925000 |
0.5446000 |
0.2396000 |
0.3313000 |
0.4229000 |
36.25 |
70.0 |
81 |
1000.00 |
3.86 |
39.51 |
0 |
39.51 |
0/1 |
| chr1 |
156354367 |
rs6668857 |
A |
G |
. |
PASS |
0.8956000 |
0.6686000 |
0.8978000 |
0.5149000 |
0.6135000 |
0.7330000 |
37.0 |
70.0 |
86 |
1000.00 |
16.28 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
156446242 |
rs2274316 |
C |
A |
. |
PASS |
0.2360000 |
0.5937000 |
0.7560000 |
0.6710000 |
0.7147000 |
0.5711000 |
35.72 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156446903 |
rs2274317 |
T |
C |
. |
PASS |
0.2368000 |
0.5951000 |
0.7560000 |
0.6720000 |
0.7147000 |
0.5717000 |
36.66 |
70.0 |
107 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156450740 |
rs1925950 |
G |
A |
. |
PASS |
0.2368000 |
0.5951000 |
0.7560000 |
0.6730000 |
0.7168000 |
0.5723000 |
35.97 |
70.0 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156450873 |
rs2274319 |
T |
C |
. |
PASS |
0.5265000 |
0.6138000 |
0.7560000 |
0.6750000 |
0.7168000 |
0.6518000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156498673 |
rs1171564 |
T |
A |
. |
PASS |
0.8472000 |
0.4366000 |
0.5933000 |
0.3191000 |
0.6769000 |
0.5998000 |
36.7 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156499969 |
rs1171566 |
T |
C |
. |
PASS |
0.8449000 |
0.4424000 |
0.6022000 |
0.3300000 |
0.6851000 |
0.6056000 |
36.82 |
69.7 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156500128 |
rs746505 |
T |
C |
. |
PASS |
0.5469000 |
0.3357000 |
0.5744000 |
0.1958000 |
0.5521000 |
0.4537000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156503541 |
rs6699212 |
T |
C |
. |
PASS |
0.9539000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9876000 |
37.0 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156504104 |
rs7552082 |
A |
C |
. |
PASS |
0.8487000 |
0.4452000 |
0.6022000 |
0.3290000 |
0.6892000 |
0.6076000 |
35.91 |
70.0 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156505061 |
rs942965 |
C |
T |
. |
PASS |
0.2511000 |
0.3156000 |
0.5655000 |
0.1899000 |
0.5358000 |
0.3666000 |
36.69 |
69.49 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156509552 |
rs1171570 |
C |
G |
. |
PASS |
0.9539000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9876000 |
37.0 |
70.0 |
22 |
879.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156518379 |
rs744224 |
G |
A |
. |
PASS |
0.2958000 |
0.3646000 |
0.5724000 |
0.2575000 |
0.5716000 |
0.4071000 |
35.93 |
69.85 |
134 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156520173 |
rs1778819 |
T |
A |
. |
PASS |
0.9554000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9880000 |
36.77 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156524221 |
rs6694580 |
G |
T |
. |
PASS |
0.2262000 |
0.3617000 |
0.5367000 |
0.3062000 |
0.5982000 |
0.3962000 |
36.62 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156526444 |
rs2488269 |
T |
C |
. |
PASS |
0.8548000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9601000 |
36.58 |
69.86 |
142 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156526564 |
rs2489138 |
C |
A |
. |
PASS |
0.1982000 |
0.3588000 |
0.5397000 |
0.3062000 |
0.5982000 |
0.3890000 |
37.0 |
70.0 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156532252 |
rs1778827 |
C |
T |
. |
PASS |
0.8548000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9601000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156532977 |
rs1171547 |
T |
C |
. |
PASS |
0.8540000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9599000 |
36.37 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156536123 |
rs2066378 |
T |
C |
. |
PASS |
0.8540000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9599000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156536133 |
rs4382715 |
A |
G |
. |
PASS |
0.8540000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9599000 |
36.48 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156536221 |
rs2066377 |
G |
C |
. |
PASS |
0.8540000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9599000 |
36.58 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156536251 |
rs947662 |
T |
C |
. |
PASS |
0.8540000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9599000 |
36.62 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156536353 |
rs947663 |
A |
G |
. |
PASS |
0.8540000 |
0.9885000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9599000 |
36.67 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156539154 |
rs6427319 |
T |
C |
. |
PASS |
0.9667000 |
1.0000000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9908000 |
36.72 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156553102 |
rs34924172 |
AG |
A |
. |
PASS |
0.1135000 |
0.2752000 |
0.4583000 |
0.2455000 |
0.5521000 |
0.3175000 |
36.73 |
69.09 |
22 |
867.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156553762 |
rs11264502 |
A |
C |
. |
PASS |
0.8056000 |
0.9424000 |
0.9692000 |
0.9583000 |
0.9151000 |
0.9095000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156556321 |
rs10796961 |
G |
A |
. |
PASS |
0.2859000 |
0.9063000 |
0.9692000 |
0.9573000 |
0.9192000 |
0.7680000 |
36.33 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156561557 |
rs149629319 |
G |
GGGGTCGGGCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.83 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156561651 |
rs7516274 |
G |
C |
. |
PASS |
0.8638000 |
0.9568000 |
0.9722000 |
0.9592000 |
0.9202000 |
0.9287000 |
36.69 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156562008 |
rs1925949 |
G |
A |
. |
PASS |
0.8638000 |
0.9568000 |
0.9722000 |
0.9592000 |
0.9192000 |
0.9285000 |
37.0 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156562143 |
rs942959 |
G |
A |
. |
PASS |
0.8638000 |
0.9568000 |
0.9722000 |
0.9592000 |
0.9192000 |
0.9285000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156563375 |
rs6427321 |
G |
A |
. |
PASS |
0.8638000 |
0.9568000 |
0.9722000 |
0.9592000 |
0.9192000 |
0.9285000 |
36.39 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156563726 |
rs6427322 |
A |
C |
. |
PASS |
0.8638000 |
0.9568000 |
0.9722000 |
0.9592000 |
0.9192000 |
0.9285000 |
36.41 |
69.87 |
101 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156563813 |
rs6668178 |
G |
A |
. |
PASS |
0.8638000 |
0.9568000 |
0.9722000 |
0.9592000 |
0.9192000 |
0.9285000 |
35.88 |
69.94 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156563852 |
rs942963 |
C |
T |
. |
PASS |
0.8638000 |
0.9568000 |
0.9722000 |
0.9592000 |
0.9192000 |
0.9285000 |
36.09 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156563898 |
rs1270 |
T |
C |
. |
PASS |
0.8638000 |
0.9568000 |
0.9722000 |
0.9592000 |
0.9192000 |
0.9285000 |
36.68 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156565049 |
rs72559129 |
A |
AAC |
. |
PASS |
0.9781000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9942000 |
36.45 |
69.39 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156565834 |
rs12024215 |
G |
C |
. |
PASS |
0.1135000 |
0.2752000 |
0.4544000 |
0.2445000 |
0.5573000 |
0.3175000 |
36.41 |
69.51 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156594364 |
rs12405992 |
T |
C |
. |
PASS |
0.1089000 |
0.2349000 |
0.3770000 |
0.2465000 |
0.5440000 |
0.2929000 |
36.82 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156617968 |
rs2277873 |
G |
A |
. |
PASS |
0.2413000 |
0.3530000 |
0.3482000 |
0.3718000 |
0.5225000 |
0.3594000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156618768 |
rs4661209 |
T |
G |
. |
PASS |
0.8949000 |
0.4669000 |
0.4038000 |
0.4742000 |
0.6810000 |
0.6104000 |
37.0 |
70.0 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156622252 |
rs1056695 |
G |
A |
. |
PASS |
0.2595000 |
0.3718000 |
0.3532000 |
0.3926000 |
0.5337000 |
0.3742000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156626920 |
rs7524611 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.66 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156628717 |
rs951964 |
C |
A |
. |
PASS |
0.4213000 |
0.4597000 |
0.3968000 |
0.4414000 |
0.6656000 |
0.4734000 |
36.5 |
70.0 |
24 |
950.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156629037 |
rs11360 |
A |
G |
. |
PASS |
0.6611000 |
0.4726000 |
0.4077000 |
0.4483000 |
0.6718000 |
0.5433000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156641537 |
rs951781 |
C |
T |
. |
PASS |
0.0363000 |
0.2738000 |
0.1200000 |
0.3439000 |
0.3252000 |
0.2043000 |
37.0 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156646668 |
rs4278369 |
A |
G |
. |
PASS |
0.9939000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9984000 |
37.0 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156670545 |
rs4661213 |
C |
T |
. |
PASS |
0.7352000 |
0.9697000 |
1.0000000 |
0.9732000 |
0.9622000 |
0.9131000 |
35.91 |
70.0 |
22 |
859.44 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156696603 |
rs35890195 |
G |
A |
. |
PASS |
0.0045000 |
0.0144000 |
0.0010000 |
0.0567000 |
0.0399000 |
0.0226000 |
37.0 |
70.0 |
14 |
217.79 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
156705593 |
rs4311877 |
G |
C |
. |
PASS |
0.8933000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9710000 |
37.0 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156706559 |
rs8658 |
A |
G |
. |
PASS |
0.6974000 |
0.8170000 |
0.6865000 |
0.6740000 |
0.7290000 |
0.6382000 |
37.0 |
70.0 |
43 |
1000.00 |
5.00 |
62.79 |
0 |
100.00 |
0/1 |
| chr1 |
156706559 |
rs8658 |
A |
C |
. |
PASS |
0.6974000 |
0.8170000 |
0.6865000 |
0.6740000 |
0.7290000 |
0.6382000 |
37.0 |
70.0 |
43 |
1000.00 |
8.43 |
37.21 |
0 |
100.00 |
0/1 |
| chr1 |
156707697 |
rs11581044 |
G |
A |
. |
PASS |
0.1369000 |
0.1700000 |
0.6855000 |
0.3260000 |
0.2710000 |
0.3161000 |
37.0 |
70.0 |
16 |
211.76 |
26.79 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
156707775 |
rs6670122 |
T |
G |
. |
PASS |
0.8601000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9617000 |
36.27 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156708244 |
rs28697076 |
C |
G |
. |
PASS |
0.1838000 |
0.2695000 |
0.0833000 |
0.2336000 |
0.3517000 |
0.2183000 |
35.5 |
70.0 |
37 |
818.47 |
3.15 |
64.86 |
0 |
64.86 |
0/1 |
| chr1 |
156713512 |
rs4437869 |
C |
T |
. |
PASS |
0.8616000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9621000 |
36.25 |
69.95 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156713558 |
rs4399146 |
G |
A |
. |
PASS |
0.0666000 |
0.2219000 |
0.1250000 |
0.3340000 |
0.2638000 |
0.1921000 |
36.38 |
69.95 |
74 |
1000.00 |
10.12 |
52.70 |
0 |
52.70 |
0/1 |
| chr1 |
156721654 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
12 |
170.02 |
16.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
156752048 |
rs2274503 |
C |
G |
. |
PASS |
0.4629000 |
0.6715000 |
0.8145000 |
0.7038000 |
0.6411000 |
0.6458000 |
36.5 |
69.58 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156752231 |
rs367770256,rs3831129 |
AT |
A |
. |
PASS |
0.4629000 |
0.6715000 |
0.8145000 |
0.7038000 |
0.6411000 |
0.6458000 |
36.65 |
70.0 |
17 |
659.05 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156784982 |
rs926103 |
T |
C |
. |
PASS |
0.3192000 |
0.6297000 |
0.8155000 |
0.6620000 |
0.6401000 |
0.5936000 |
36.61 |
70.0 |
123 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156785617 |
rs1800601 |
G |
A |
. |
PASS |
0.4440000 |
0.6657000 |
0.8135000 |
0.6948000 |
0.6360000 |
0.6370000 |
35.99 |
70.0 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156785762 |
rs11325907 |
AG |
A |
. |
PASS |
0.2761000 |
0.6340000 |
0.8125000 |
0.6610000 |
0.6339000 |
0.5809000 |
36.39 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156785771 |
rs7546838 |
A |
G |
. |
PASS |
0.4062000 |
0.6398000 |
0.8125000 |
0.6610000 |
0.6339000 |
0.6160000 |
36.3 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156785779 |
rs1800600 |
G |
A |
. |
PASS |
0.5340000 |
0.6744000 |
0.8135000 |
0.6958000 |
0.6401000 |
0.6629000 |
36.65 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156786573 |
rs34770558 |
CTC |
CAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
70.0 |
17 |
201.62 |
13.45 |
41.18 |
1 |
41.18 |
0/1 |
| chr1 |
156786574 |
rs12738727 |
T |
A |
. |
PASS |
0.0015000 |
0.0043000 |
0.0010000 |
0.0239000 |
0.0123000 |
0.0083866 |
35.5 |
70.0 |
15 |
240.38 |
3.33 |
53.33 |
1 |
53.33 |
0/1 |
| chr1 |
156786575 |
rs12753240 |
C |
A |
. |
PASS |
0.0015000 |
0.0043000 |
0.0020000 |
0.0239000 |
0.0123000 |
0.0085863 |
35.29 |
70.0 |
14 |
201.62 |
0.00 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
156818647 |
rs11590051 |
T |
C |
. |
PASS |
0.0091000 |
0.2032000 |
0.0278000 |
0.1928000 |
0.1329000 |
0.1008000 |
36.33 |
70.0 |
33 |
608.06 |
7.07 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
156830779 |
rs1007211 |
G |
A |
. |
PASS |
0.0008000 |
0.0043000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0009984 |
36.74 |
70.0 |
98 |
1000.00 |
0.26 |
47.96 |
0 |
47.96 |
0/1 |
| chr1 |
156838141 |
rs1800879 |
T |
C |
. |
PASS |
0.6097000 |
0.6369000 |
0.9554000 |
0.6034000 |
0.7628000 |
0.7117000 |
37.0 |
70.0 |
33 |
536.53 |
15.15 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
156845492 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.45 |
70.0 |
114 |
1000.00 |
2.95 |
46.49 |
1 |
46.49 |
0/1 |
| chr1 |
156845492 |
. |
AGT |
AGTGTGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
119 |
1000.00 |
1.01 |
42.02 |
1 |
97.48 |
0/1 |
| chr1 |
156845492 |
. |
AGT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.48 |
70.0 |
119 |
1000.00 |
2.49 |
45.38 |
1 |
97.48 |
0/1 |
| chr1 |
156845493 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.45 |
70.0 |
114 |
1000.00 |
1.19 |
46.49 |
1 |
46.49 |
0/1 |
| chr1 |
156846233 |
rs6334 |
G |
A |
. |
PASS |
0.1142000 |
0.2205000 |
0.3204000 |
0.1968000 |
0.2464000 |
0.2129000 |
36.75 |
70.0 |
108 |
1000.00 |
6.02 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
156848995 |
rs6337 |
C |
T |
. |
PASS |
0.1384000 |
0.5735000 |
0.0437000 |
0.7127000 |
0.3384000 |
0.3341000 |
36.23 |
70.0 |
145 |
1000.00 |
6.23 |
42.76 |
0 |
42.76 |
0/1 |
| chr1 |
156850104 |
rs2274499 |
G |
C |
. |
PASS |
0.5779000 |
0.8256000 |
0.4484000 |
0.9225000 |
0.6339000 |
0.6663000 |
36.14 |
70.0 |
14 |
533.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156850112 |
rs2274500 |
T |
G |
. |
PASS |
0.5779000 |
0.8271000 |
0.4474000 |
0.9235000 |
0.6350000 |
0.6667000 |
37.0 |
70.0 |
16 |
628.69 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156873727 |
rs12407843 |
G |
A |
. |
PASS |
0.1460000 |
0.1499000 |
0.3442000 |
0.1113000 |
0.2229000 |
0.1945000 |
37.0 |
70.0 |
34 |
115.82 |
21.57 |
17.65 |
0 |
17.65 |
0/1 |
| chr1 |
156875037 |
rs6676171 |
T |
G |
. |
PASS |
0.7103000 |
0.4179000 |
0.7966000 |
0.2038000 |
0.5982000 |
0.5635000 |
37.0 |
70.0 |
17 |
413.45 |
8.82 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
156875092 |
rs4661074 |
G |
A |
. |
PASS |
0.1369000 |
0.5735000 |
0.2034000 |
0.7962000 |
0.4018000 |
0.3950000 |
37.0 |
70.0 |
46 |
748.02 |
18.97 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
156875097 |
rs4661075 |
G |
A |
. |
PASS |
0.2595000 |
0.5850000 |
0.2450000 |
0.7992000 |
0.4254000 |
0.4425000 |
37.0 |
70.0 |
44 |
712.27 |
19.70 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
156875107 |
rs2644590 |
C |
A |
. |
PASS |
0.1263000 |
0.5735000 |
0.2034000 |
0.7952000 |
0.4018000 |
0.3920000 |
36.0 |
70.0 |
56 |
773.29 |
17.86 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
156876206 |
rs6688345 |
G |
A |
. |
PASS |
0.3434000 |
0.1657000 |
0.3641000 |
0.1103000 |
0.2249000 |
0.2530000 |
37.0 |
70.0 |
31 |
417.23 |
1.99 |
41.94 |
0 |
41.94 |
0/1 |
| chr1 |
156876221 |
rs6688349 |
G |
A |
. |
PASS |
0.3427000 |
0.1657000 |
0.3641000 |
0.1103000 |
0.2249000 |
0.2528000 |
37.0 |
70.0 |
18 |
331.05 |
20.00 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
156876237 |
rs6664765 |
C |
T |
. |
PASS |
0.3434000 |
0.1671000 |
0.3641000 |
0.1103000 |
0.2249000 |
0.2532000 |
37.0 |
70.0 |
16 |
253.53 |
25.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
156876260 |
rs6664770 |
C |
T |
. |
PASS |
0.3434000 |
0.1671000 |
0.3631000 |
0.1103000 |
0.2249000 |
0.2530000 |
37.0 |
70.0 |
12 |
223.80 |
38.10 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
156876373 |
rs6677442 |
A |
G |
. |
PASS |
0.3427000 |
0.1715000 |
0.3681000 |
0.1302000 |
0.2260000 |
0.2586000 |
36.66 |
69.43 |
56 |
1000.00 |
12.14 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
156876729 |
rs735953 |
T |
C |
. |
PASS |
0.3480000 |
0.1657000 |
0.3641000 |
0.1093000 |
0.2270000 |
0.2544000 |
36.0 |
70.0 |
34 |
354.43 |
1.96 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
156877457 |
rs1952294 |
T |
C |
. |
PASS |
0.9100000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9758000 |
36.71 |
69.88 |
165 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
156877797 |
rs77235035 |
C |
A |
. |
PASS |
0.2383000 |
0.1931000 |
0.3502000 |
0.1223000 |
0.2198000 |
0.2276000 |
36.53 |
68.82 |
119 |
1000.00 |
8.96 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
156877884 |
rs150532135 |
T |
TG |
. |
PASS |
0.1543000 |
0.1816000 |
0.3492000 |
0.1262000 |
0.2280000 |
0.2061000 |
36.25 |
68.75 |
37 |
481.87 |
4.68 |
40.54 |
0 |
43.24 |
0/1 |
| chr1 |
156878435 |
rs11800463 |
C |
T |
. |
PASS |
0.2617000 |
0.1585000 |
0.3135000 |
0.1243000 |
0.2260000 |
0.2232000 |
35.24 |
70.0 |
94 |
1000.00 |
0.57 |
43.62 |
0 |
43.62 |
0/1 |
| chr1 |
156878531 |
rs11264580 |
T |
C |
. |
PASS |
0.2617000 |
0.1585000 |
0.3135000 |
0.1243000 |
0.2260000 |
0.2232000 |
36.72 |
70.0 |
84 |
1000.00 |
6.64 |
51.19 |
0 |
51.19 |
0/1 |
| chr1 |
156878737 |
rs6671392 |
T |
C |
. |
PASS |
0.2617000 |
0.1585000 |
0.3145000 |
0.1243000 |
0.2260000 |
0.2234000 |
36.4 |
70.0 |
52 |
634.41 |
5.38 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
156878887 |
rs11810027 |
G |
A |
. |
PASS |
0.1944000 |
0.1484000 |
0.3135000 |
0.1243000 |
0.2260000 |
0.2041000 |
37.0 |
70.0 |
15 |
173.00 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
156879504 |
rs41273205 |
A |
G |
. |
PASS |
0.2617000 |
0.1196000 |
0.3145000 |
0.1074000 |
0.1881000 |
0.2073000 |
35.8 |
68.0 |
38 |
258.86 |
5.26 |
26.32 |
0 |
26.32 |
0/1 |
| chr1 |
156879532 |
rs41273207 |
C |
T |
. |
PASS |
0.0000000 |
0.0202000 |
0.0000000 |
0.0358000 |
0.0286000 |
0.0155750 |
36.52 |
68.4 |
71 |
786.07 |
24.68 |
35.21 |
0 |
35.21 |
0/1 |
| chr1 |
156879580 |
rs3737224 |
C |
T |
. |
PASS |
0.1589000 |
0.1037000 |
0.3145000 |
0.1024000 |
0.1871000 |
0.1767000 |
36.64 |
69.39 |
88 |
1000.00 |
11.36 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
156881959 |
rs41273215 |
C |
T |
. |
PASS |
0.1536000 |
0.1037000 |
0.3145000 |
0.1034000 |
0.1728000 |
0.1727000 |
36.43 |
69.05 |
48 |
688.22 |
7.14 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
156882996 |
rs822441 |
G |
C |
. |
PASS |
0.5477000 |
0.1470000 |
0.3323000 |
0.1590000 |
0.2843000 |
0.3193000 |
36.43 |
70.0 |
59 |
650.96 |
15.33 |
35.59 |
0 |
35.59 |
0/1 |
| chr1 |
156883215 |
rs822442 |
C |
A |
. |
PASS |
0.2481000 |
0.1023000 |
0.2897000 |
0.1034000 |
0.1585000 |
0.1897000 |
36.08 |
70.0 |
67 |
823.72 |
9.18 |
38.81 |
0 |
38.81 |
0/1 |
| chr1 |
156884365 |
rs749256 |
T |
C |
. |
PASS |
0.9705000 |
0.8602000 |
1.0000000 |
0.7316000 |
0.9560000 |
0.9103000 |
32.2 |
70.0 |
14 |
110.22 |
17.14 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
156884584 |
rs56260937 |
C |
T |
. |
PASS |
0.1573000 |
0.1628000 |
0.2827000 |
0.1730000 |
0.1616000 |
0.1873000 |
35.7 |
70.0 |
93 |
1000.00 |
0.98 |
49.46 |
0 |
49.46 |
0/1 |
| chr1 |
156890672 |
rs41273221 |
T |
C |
. |
PASS |
0.1604000 |
0.1628000 |
0.2847000 |
0.1740000 |
0.1616000 |
0.1887000 |
36.79 |
70.0 |
117 |
1000.00 |
5.25 |
47.01 |
0 |
47.86 |
0/1 |
| chr1 |
156891504 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
70.0 |
12 |
223.98 |
25.00 |
66.67 |
1 |
66.67 |
0/1 |
| chr1 |
156891504 |
. |
AACACACAC |
AAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
11 |
63.89 |
45.45 |
18.18 |
1 |
63.64 |
0/1 |
| chr1 |
156891504 |
rs71732184,rs72207061 |
AACACACAC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.25 |
70.0 |
11 |
63.89 |
45.45 |
36.36 |
1 |
63.64 |
0/1 |
| chr1 |
156891505 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
70.0 |
12 |
223.98 |
25.00 |
66.67 |
1 |
66.67 |
0/1 |
| chr1 |
156891506 |
. |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
70.0 |
12 |
223.98 |
25.00 |
66.67 |
1 |
66.67 |
0/1 |
| chr1 |
156891507 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
70.0 |
12 |
223.98 |
25.00 |
66.67 |
1 |
66.67 |
0/1 |
| chr1 |
156891610 |
rs12143768 |
G |
A |
. |
PASS |
0.2042000 |
0.1657000 |
0.2847000 |
0.1740000 |
0.1616000 |
0.2007000 |
34.0 |
70.0 |
10 |
92.51 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
156893843 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.2 |
70.0 |
73 |
113.34 |
134.25 |
13.70 |
0 |
13.70 |
0/1 |
| chr1 |
156893847 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
72 |
223.91 |
133.33 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
156894006 |
rs822438 |
C |
G |
. |
PASS |
0.9168000 |
0.7089000 |
0.8512000 |
0.5298000 |
0.7444000 |
0.7634000 |
37.0 |
67.14 |
23 |
186.55 |
2.48 |
30.43 |
0 |
30.43 |
0/1 |
| chr1 |
156894363 |
. |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
70.0 |
32 |
63.90 |
168.75 |
15.62 |
0 |
15.62 |
0/1 |
| chr1 |
156894367 |
. |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
34 |
111.66 |
158.82 |
17.65 |
0 |
17.65 |
0/1 |
| chr1 |
156894613 |
rs12117221 |
G |
T |
. |
PASS |
0.1899000 |
0.1643000 |
0.2847000 |
0.1720000 |
0.1616000 |
0.1963000 |
35.5 |
70.0 |
15 |
240.38 |
8.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
156894825 |
rs72698699 |
C |
T |
. |
PASS |
0.1929000 |
0.1816000 |
0.3135000 |
0.1928000 |
0.2188000 |
0.2206000 |
35.98 |
70.0 |
96 |
1000.00 |
6.47 |
48.96 |
0 |
48.96 |
0/1 |
| chr1 |
156899288 |
rs11264584 |
G |
A |
. |
PASS |
0.1921000 |
0.1628000 |
0.2867000 |
0.1720000 |
0.1616000 |
0.1971000 |
35.43 |
70.0 |
54 |
729.69 |
15.46 |
42.59 |
0 |
42.59 |
0/1 |
| chr1 |
156899592 |
rs822427 |
A |
G |
. |
PASS |
0.4592000 |
0.2133000 |
0.3343000 |
0.1928000 |
0.2239000 |
0.3005000 |
36.59 |
70.0 |
45 |
1000.00 |
1.38 |
64.44 |
0 |
64.44 |
0/1 |
| chr1 |
156901888 |
rs822429 |
T |
C |
. |
PASS |
0.5212000 |
0.2147000 |
0.3343000 |
0.1948000 |
0.2290000 |
0.3185000 |
37.0 |
70.0 |
32 |
664.85 |
4.93 |
59.38 |
0 |
59.38 |
0/1 |
| chr1 |
156902222 |
rs12119908 |
G |
A |
. |
PASS |
0.1936000 |
0.1643000 |
0.2907000 |
0.1740000 |
0.1656000 |
0.1997000 |
37.0 |
70.0 |
74 |
1000.00 |
1.43 |
45.95 |
0 |
45.95 |
0/1 |
| chr1 |
156902259 |
rs822430 |
G |
A |
. |
PASS |
0.8880000 |
0.7061000 |
0.8492000 |
0.5318000 |
0.7413000 |
0.7548000 |
37.0 |
70.0 |
116 |
1000.00 |
3.96 |
40.52 |
0 |
40.52 |
0/1 |
| chr1 |
156902281 |
rs822431 |
T |
G |
. |
PASS |
0.4470000 |
0.2997000 |
0.2917000 |
0.1750000 |
0.1513000 |
0.2829000 |
36.48 |
70.0 |
116 |
1000.00 |
0.00 |
39.66 |
0 |
39.66 |
0/1 |
| chr1 |
156906881 |
rs2275198 |
G |
A |
. |
PASS |
0.1641000 |
0.1628000 |
0.2867000 |
0.1740000 |
0.1656000 |
0.1909000 |
36.48 |
70.0 |
45 |
780.79 |
2.13 |
51.11 |
0 |
51.11 |
0/1 |
| chr1 |
156906910 |
rs868187 |
C |
T |
. |
PASS |
0.5121000 |
0.2176000 |
0.3343000 |
0.1958000 |
0.2280000 |
0.3165000 |
37.0 |
70.0 |
31 |
500.78 |
10.75 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
156907031 |
rs4570419 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.84 |
70.0 |
69 |
1000.00 |
8.23 |
44.93 |
0 |
44.93 |
0/1 |
| chr1 |
156907081 |
rs945508 |
T |
C |
. |
PASS |
0.8880000 |
0.7233000 |
0.8512000 |
0.5517000 |
0.7454000 |
0.7624000 |
36.49 |
70.0 |
83 |
1000.00 |
8.87 |
56.63 |
0 |
56.63 |
0/1 |
| chr1 |
156909303 |
rs3818807 |
T |
A |
. |
PASS |
0.1929000 |
0.1643000 |
0.2867000 |
0.1740000 |
0.1656000 |
0.1987000 |
36.54 |
69.23 |
50 |
886.90 |
15.08 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
156909695 |
rs2275199 |
G |
A |
. |
PASS |
0.1634000 |
0.1628000 |
0.2867000 |
0.1740000 |
0.1656000 |
0.1907000 |
37.0 |
70.0 |
47 |
577.93 |
3.07 |
38.30 |
0 |
38.30 |
0/1 |
| chr1 |
156914070 |
rs16837807 |
C |
A |
. |
PASS |
0.3003000 |
0.2003000 |
0.3343000 |
0.1948000 |
0.2280000 |
0.2580000 |
37.0 |
70.0 |
17 |
329.91 |
14.12 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
156914240 |
rs112088642,rs71669293,rs72328716,rs59862718 |
CCATTCATT |
C |
. |
PASS |
0.5015000 |
0.5086000 |
0.5010000 |
0.3638000 |
0.5307000 |
0.4804000 |
36.5 |
70.0 |
24 |
365.93 |
8.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
156915038 |
rs2275201 |
C |
T |
. |
PASS |
0.6536000 |
0.2205000 |
0.3343000 |
0.1948000 |
0.2280000 |
0.3540000 |
37.0 |
70.0 |
40 |
724.31 |
3.33 |
52.50 |
0 |
52.50 |
0/1 |
| chr1 |
156916640 |
rs3831269,rs111988963 |
G |
GCCTATCCCTT |
. |
PASS |
0.6573000 |
0.2233000 |
0.3343000 |
0.1948000 |
0.2301000 |
0.3558000 |
36.33 |
70.0 |
17 |
263.70 |
18.30 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
156925435 |
rs2275204 |
T |
C |
. |
PASS |
0.2700000 |
0.1758000 |
0.2867000 |
0.1750000 |
0.1708000 |
0.2218000 |
37.0 |
70.0 |
21 |
489.10 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
156928776 |
rs1572409 |
A |
T |
. |
PASS |
0.2610000 |
0.1715000 |
0.2857000 |
0.1740000 |
0.1769000 |
0.2196000 |
37.0 |
70.0 |
39 |
639.63 |
1.89 |
48.72 |
0 |
48.72 |
0/1 |
| chr1 |
156930101 |
rs72700711 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0010000 |
0.0003994 |
37.0 |
70.0 |
29 |
548.57 |
6.03 |
55.17 |
0 |
55.17 |
0/1 |
| chr1 |
156939067 |
rs2275206 |
G |
A |
. |
PASS |
0.1483000 |
0.1628000 |
0.2669000 |
0.1750000 |
0.1718000 |
0.1841000 |
37.0 |
70.0 |
63 |
1000.00 |
1.64 |
49.21 |
0 |
49.21 |
0/1 |
| chr1 |
156939175 |
rs1336149 |
C |
T |
. |
PASS |
0.8207000 |
0.6700000 |
0.8353000 |
0.4891000 |
0.7137000 |
0.7153000 |
35.67 |
70.0 |
19 |
274.26 |
26.90 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
156946898 |
rs1006168 |
T |
G |
. |
PASS |
0.2466000 |
0.1671000 |
0.2956000 |
0.1759000 |
0.1759000 |
0.2175000 |
37.0 |
70.0 |
18 |
285.13 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
156947928 |
rs16837897 |
T |
C |
. |
PASS |
0.2436000 |
0.1671000 |
0.2956000 |
0.1759000 |
0.1759000 |
0.2167000 |
36.37 |
70.0 |
37 |
637.79 |
9.10 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
156947953 |
rs12141806 |
A |
T |
. |
PASS |
0.1944000 |
0.1643000 |
0.2946000 |
0.1759000 |
0.1708000 |
0.2021000 |
37.0 |
70.0 |
67 |
1000.00 |
12.87 |
47.76 |
0 |
47.76 |
0/1 |
| chr1 |
156954267 |
rs6427339 |
C |
T |
. |
PASS |
0.7027000 |
0.5375000 |
0.7798000 |
0.3926000 |
0.4918000 |
0.5919000 |
37.0 |
70.0 |
22 |
68.39 |
4.55 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
157028990 |
rs866605 |
T |
C |
. |
PASS |
0.8729000 |
0.9697000 |
0.9980000 |
0.9115000 |
0.9376000 |
0.9319000 |
36.0 |
69.88 |
24 |
942.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157029199 |
rs11264607 |
A |
G |
. |
PASS |
0.0287000 |
0.1556000 |
0.2798000 |
0.1740000 |
0.1646000 |
0.1526000 |
36.14 |
70.0 |
39 |
422.92 |
10.62 |
35.90 |
0 |
35.90 |
0/1 |
| chr1 |
157043044 |
rs2316334 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
69.79 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157043172 |
rs34834514,rs142051288 |
G |
GGCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
23 |
417.73 |
3.34 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
157043491 |
rs11264609 |
A |
G |
. |
PASS |
0.3979000 |
0.4914000 |
0.2867000 |
0.6282000 |
0.5716000 |
0.4687000 |
37.0 |
68.38 |
23 |
441.31 |
1.34 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
157043732 |
rs56389633 |
A |
G |
. |
PASS |
0.2572000 |
0.4280000 |
0.2540000 |
0.5159000 |
0.4601000 |
0.3718000 |
36.2 |
69.93 |
33 |
482.75 |
15.76 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
157043989 |
rs140355077 |
CCG |
C |
. |
PASS |
0.3116000 |
0.4568000 |
0.2560000 |
0.6044000 |
0.5204000 |
0.4201000 |
37.0 |
70.0 |
41 |
255.27 |
2.93 |
24.39 |
0 |
24.39 |
0/1 |
| chr1 |
157062364 |
rs1176536 |
G |
A |
. |
PASS |
0.0431000 |
0.2493000 |
0.2391000 |
0.3698000 |
0.2035000 |
0.2081000 |
37.0 |
70.0 |
27 |
471.05 |
7.94 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
157062696 |
rs1176537 |
G |
T |
. |
PASS |
0.0908000 |
0.2637000 |
0.2381000 |
0.3728000 |
0.2076000 |
0.2238000 |
36.45 |
70.0 |
56 |
701.77 |
1.62 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
157068533 |
rs12083811 |
G |
A |
. |
PASS |
0.0234000 |
0.0144000 |
0.0000000 |
0.0288000 |
0.0031000 |
0.0145770 |
36.49 |
70.0 |
91 |
1000.00 |
7.62 |
51.65 |
0 |
51.65 |
0/1 |
| chr1 |
157079130 |
rs1176529 |
G |
A |
. |
PASS |
0.3903000 |
0.5173000 |
0.3532000 |
0.5646000 |
0.4294000 |
0.4431000 |
36.67 |
69.81 |
108 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157369715 |
rs6686786 |
C |
T |
. |
PASS |
0.3162000 |
0.6167000 |
0.5129000 |
0.5547000 |
0.5204000 |
0.4852000 |
36.67 |
64.54 |
164 |
1000.00 |
4.34 |
43.90 |
0 |
43.90 |
0/1 |
| chr1 |
157369744 |
rs4971196 |
G |
A |
. |
PASS |
0.3162000 |
0.6167000 |
0.5129000 |
0.5547000 |
0.5204000 |
0.4852000 |
36.61 |
64.13 |
143 |
1000.00 |
1.67 |
43.36 |
0 |
43.36 |
0/1 |
| chr1 |
157369792 |
rs6427375 |
A |
G |
. |
PASS |
0.8230000 |
0.8458000 |
0.9683000 |
0.7167000 |
0.9151000 |
0.8520000 |
36.14 |
64.24 |
88 |
1000.00 |
0.87 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
157369882 |
rs6686904 |
C |
T |
. |
PASS |
0.6619000 |
0.8141000 |
0.9187000 |
0.6700000 |
0.8701000 |
0.7770000 |
37.0 |
69.0 |
17 |
375.83 |
0.00 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
157485561 |
rs3811035 |
G |
A |
. |
PASS |
0.0900000 |
0.6484000 |
0.6558000 |
0.6252000 |
0.6840000 |
0.5048000 |
35.05 |
69.77 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157485720 |
rs1002967 |
T |
C |
. |
PASS |
0.8805000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9675000 |
37.0 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157490710 |
rs6696309 |
G |
A |
. |
PASS |
0.1241000 |
0.6470000 |
0.8244000 |
0.6153000 |
0.6953000 |
0.5477000 |
37.0 |
68.89 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157508801 |
rs1972239 |
C |
T |
. |
PASS |
0.6157000 |
0.8314000 |
0.8780000 |
0.8658000 |
0.9264000 |
0.8093000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157508882 |
rs6427384 |
C |
T |
. |
PASS |
0.3222000 |
0.8098000 |
0.7887000 |
0.8539000 |
0.8487000 |
0.6933000 |
36.17 |
69.95 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157509025 |
rs2012199 |
C |
T |
. |
PASS |
0.7345000 |
0.8357000 |
0.8780000 |
0.8648000 |
0.9264000 |
0.8411000 |
36.7 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157514097 |
rs6679793 |
A |
G |
. |
PASS |
0.4115000 |
0.7334000 |
0.9067000 |
0.8221000 |
0.7648000 |
0.7073000 |
36.6 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157550066 |
rs10489673 |
T |
C |
. |
PASS |
0.0318000 |
0.5159000 |
0.6190000 |
0.3817000 |
0.5194000 |
0.3826000 |
36.33 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157557701 |
rs2777962 |
G |
A |
. |
PASS |
0.3623000 |
0.5375000 |
0.6806000 |
0.4284000 |
0.5389000 |
0.4984000 |
36.38 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157559122 |
rs11582663 |
C |
T |
. |
PASS |
0.0045000 |
0.0692000 |
0.0010000 |
0.1581000 |
0.0204000 |
0.0467000 |
36.62 |
69.69 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157567751 |
rs1361889 |
A |
G |
. |
PASS |
0.6694000 |
0.8501000 |
0.9008000 |
0.7823000 |
0.8354000 |
0.7961000 |
36.81 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157599858 |
rs2777997 |
C |
T |
. |
PASS |
0.4697000 |
0.5461000 |
0.7034000 |
0.4394000 |
0.5675000 |
0.5403000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157599917 |
rs2758629 |
A |
G |
. |
PASS |
0.4107000 |
0.5432000 |
0.7034000 |
0.4384000 |
0.5654000 |
0.5238000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157599937 |
rs2777998 |
T |
A |
. |
PASS |
0.4107000 |
0.5418000 |
0.7034000 |
0.4394000 |
0.5654000 |
0.5238000 |
37.0 |
70.0 |
19 |
754.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157606064 |
rs2758695 |
C |
T |
. |
PASS |
0.8767000 |
0.7378000 |
0.8165000 |
0.6700000 |
0.7249000 |
0.7742000 |
35.74 |
70.0 |
19 |
734.13 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157606294 |
rs2248138 |
T |
A |
. |
PASS |
0.8767000 |
0.7378000 |
0.8165000 |
0.6700000 |
0.7260000 |
0.7744000 |
36.2 |
69.8 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157739631 |
rs56360917 |
C |
T |
. |
PASS |
0.0015000 |
0.0072000 |
0.0000000 |
0.0119000 |
0.0010000 |
0.0039936 |
36.37 |
67.89 |
37 |
637.79 |
7.68 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
157771880 |
rs4971154 |
C |
T |
. |
PASS |
0.0643000 |
0.5072000 |
0.5238000 |
0.4930000 |
0.5010000 |
0.3896000 |
36.59 |
69.77 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157802979 |
rs2261295 |
C |
T |
. |
PASS |
0.8427000 |
0.7622000 |
0.8095000 |
0.7197000 |
0.8620000 |
0.8039000 |
36.61 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157811392 |
rs2260040 |
G |
A |
. |
PASS |
0.7912000 |
0.7522000 |
0.8095000 |
0.7187000 |
0.8620000 |
0.7887000 |
35.86 |
69.05 |
21 |
817.67 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
157894797 |
rs3923515 |
T |
C |
. |
PASS |
0.8994000 |
0.8545000 |
0.9147000 |
0.6859000 |
0.7382000 |
0.8219000 |
37.0 |
70.0 |
30 |
670.87 |
0.35 |
63.33 |
0 |
63.33 |
0/1 |
| chr1 |
157922669 |
. |
CG |
CGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
20 |
107.15 |
10.00 |
30.00 |
1 |
45.00 |
0/1 |
| chr1 |
157922670 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
23 |
107.15 |
156.52 |
21.74 |
1 |
21.74 |
0/1 |
| chr1 |
158056299 |
rs7367384 |
C |
G |
. |
PASS |
0.0825000 |
0.5591000 |
0.7609000 |
0.4384000 |
0.4325000 |
0.4249000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158056651 |
rs7364493 |
A |
G |
. |
PASS |
0.1536000 |
0.6671000 |
0.7411000 |
0.6531000 |
0.5072000 |
0.5124000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158058109 |
rs6427419 |
C |
A |
. |
PASS |
0.0257000 |
0.5836000 |
0.6974000 |
0.5149000 |
0.6196000 |
0.4525000 |
36.22 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158146946 |
rs3021477 |
T |
C |
. |
PASS |
0.7844000 |
0.7579000 |
0.8482000 |
0.5964000 |
0.6401000 |
0.7276000 |
37.0 |
69.4 |
46 |
664.48 |
15.65 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
158153996 |
rs426336 |
T |
C |
. |
PASS |
0.9758000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9936000 |
36.68 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158165661 |
rs382436 |
T |
C |
. |
PASS |
0.5930000 |
0.8012000 |
0.9276000 |
0.9652000 |
0.9029000 |
0.8245000 |
37.0 |
69.75 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158165722 |
rs1633129 |
G |
A |
. |
PASS |
0.3185000 |
0.3213000 |
0.6071000 |
0.4443000 |
0.6769000 |
0.4722000 |
37.0 |
69.48 |
31 |
751.40 |
5.22 |
67.74 |
0 |
67.74 |
0/1 |
| chr1 |
158165742 |
rs1633130 |
A |
T |
. |
PASS |
0.3185000 |
0.3213000 |
0.6071000 |
0.4443000 |
0.6769000 |
0.4722000 |
35.96 |
69.43 |
33 |
800.75 |
10.80 |
69.70 |
0 |
69.70 |
0/1 |
| chr1 |
158165938 |
rs1633131 |
A |
C |
. |
PASS |
0.3185000 |
0.3213000 |
0.6071000 |
0.4443000 |
0.6769000 |
0.4722000 |
35.67 |
70.0 |
18 |
273.12 |
22.22 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
158166831 |
rs1633134 |
A |
C |
. |
PASS |
0.3185000 |
0.3213000 |
0.6071000 |
0.4443000 |
0.6769000 |
0.4722000 |
35.5 |
70.0 |
39 |
490.30 |
12.82 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
158224575 |
. |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
70.0 |
16 |
196.20 |
17.86 |
43.75 |
1 |
43.75 |
0/1 |
| chr1 |
158224575 |
. |
CTGTGTG |
CTGTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
15 |
70.89 |
80.00 |
6.67 |
1 |
40.00 |
0/1 |
| chr1 |
158224575 |
rs200343605 |
CTGTGTG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
15 |
70.89 |
20.00 |
26.67 |
1 |
40.00 |
0/1 |
| chr1 |
158224576 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
70.0 |
16 |
196.20 |
17.86 |
43.75 |
1 |
43.75 |
0/1 |
| chr1 |
158224577 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
16 |
154.43 |
8.33 |
37.50 |
1 |
37.50 |
0/1 |
| chr1 |
158224578 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
16 |
154.43 |
8.33 |
37.50 |
1 |
37.50 |
0/1 |
| chr1 |
158424637 |
rs1844787 |
A |
C |
. |
PASS |
0.9622000 |
0.7954000 |
0.8829000 |
0.9195000 |
0.8681000 |
0.8962000 |
36.66 |
70.0 |
66 |
1000.00 |
5.89 |
53.03 |
0 |
53.03 |
0/1 |
| chr1 |
158495244 |
. |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
26 |
52.20 |
23.08 |
15.38 |
0 |
15.38 |
0/1 |
| chr1 |
158548788 |
rs72698782 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.29 |
70.0 |
77 |
1000.00 |
0.61 |
44.16 |
0 |
44.16 |
0/1 |
| chr1 |
158577167 |
rs2427808 |
A |
T |
. |
PASS |
0.0461000 |
0.0980000 |
0.0794000 |
0.1332000 |
0.2096000 |
0.1094000 |
37.0 |
70.0 |
37 |
478.56 |
9.37 |
40.54 |
0 |
40.54 |
0/1 |
| chr1 |
158587784 |
rs857717 |
T |
G |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
37.0 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158597309 |
rs12044097 |
A |
G |
. |
PASS |
0.0076000 |
0.2795000 |
0.2817000 |
0.1640000 |
0.2853000 |
0.1861000 |
37.0 |
70.0 |
11 |
59.73 |
36.36 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
158607788 |
rs2518492 |
T |
G |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
37.0 |
70.0 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158619728 |
rs2482965 |
A |
C |
. |
PASS |
0.9796000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9946000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158639601 |
rs2298801 |
A |
G |
. |
PASS |
0.2791000 |
0.5000000 |
0.3383000 |
0.4612000 |
0.3763000 |
0.3772000 |
35.17 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158644105 |
rs703116 |
T |
A |
. |
PASS |
0.0900000 |
0.4323000 |
0.4177000 |
0.3767000 |
0.5675000 |
0.3542000 |
36.57 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158647495 |
rs325996 |
A |
T |
. |
PASS |
0.8442000 |
0.9914000 |
1.0000000 |
0.9960000 |
1.0000000 |
0.9569000 |
36.68 |
69.73 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158647631 |
rs325995 |
T |
A |
. |
PASS |
0.8442000 |
0.9914000 |
1.0000000 |
0.9960000 |
1.0000000 |
0.9569000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158654786 |
rs385096 |
C |
T |
. |
PASS |
0.8880000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9698000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158655036 |
rs435080 |
G |
A |
. |
PASS |
0.8880000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9698000 |
36.31 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158655162 |
rs2564859 |
C |
A |
. |
PASS |
0.8880000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9698000 |
36.47 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158656281 |
rs2564858 |
T |
C |
. |
PASS |
0.8880000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9698000 |
36.69 |
69.49 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158656347 |
rs111674514,rs60465109 |
C |
CAGAG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
69.59 |
52 |
1000.00 |
1.72 |
90.38 |
0 |
96.15 |
1/1 |
| chr1 |
158735595 |
rs857824 |
C |
T |
. |
PASS |
0.7784000 |
0.7839000 |
0.6171000 |
0.7217000 |
0.4335000 |
0.6679000 |
36.74 |
70.0 |
47 |
1000.00 |
2.13 |
97.87 |
0 |
97.87 |
1/1 |
| chr1 |
158735691 |
rs857825 |
T |
C |
. |
PASS |
0.7784000 |
0.7839000 |
0.6171000 |
0.7217000 |
0.4335000 |
0.6679000 |
36.74 |
69.13 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158735740 |
rs857826 |
A |
G |
. |
PASS |
0.7784000 |
0.7839000 |
0.6171000 |
0.7217000 |
0.4335000 |
0.6679000 |
36.52 |
69.47 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158735892 |
rs857827 |
A |
G |
. |
PASS |
0.7784000 |
0.7839000 |
0.6171000 |
0.7217000 |
0.4335000 |
0.6679000 |
36.69 |
70.0 |
77 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158736215 |
rs6666753 |
G |
A |
. |
PASS |
0.7300000 |
0.9308000 |
0.9087000 |
0.9473000 |
0.6022000 |
0.8125000 |
36.46 |
69.7 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158736445 |
rs1864346 |
C |
T |
. |
PASS |
0.0182000 |
0.3314000 |
0.4246000 |
0.3340000 |
0.2198000 |
0.2462000 |
36.71 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158736517 |
rs1864347 |
A |
T |
. |
PASS |
0.0182000 |
0.3314000 |
0.4246000 |
0.3340000 |
0.2198000 |
0.2462000 |
36.7 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158813819 |
rs857870 |
A |
G |
. |
PASS |
0.3071000 |
0.5447000 |
0.6954000 |
0.5825000 |
0.5869000 |
0.5282000 |
36.21 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158819324 |
rs2261161 |
G |
C |
. |
PASS |
0.3646000 |
0.5533000 |
0.6954000 |
0.5815000 |
0.5869000 |
0.5443000 |
37.0 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158848721 |
rs2427820 |
T |
G |
. |
PASS |
0.7027000 |
0.8429000 |
0.9623000 |
0.7396000 |
0.7076000 |
0.7827000 |
37.0 |
70.0 |
14 |
545.15 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158909164 |
rs2325704 |
C |
A |
. |
PASS |
0.7602000 |
0.8271000 |
0.8522000 |
0.7734000 |
0.7965000 |
0.7977000 |
37.0 |
70.0 |
10 |
58.59 |
0.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
158913525 |
rs856082 |
A |
G |
. |
PASS |
0.7073000 |
0.9625000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9169000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158913532 |
rs4656498 |
C |
T |
. |
PASS |
0.1120000 |
0.3948000 |
0.5030000 |
0.4751000 |
0.4356000 |
0.3660000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
158943382 |
rs12071136 |
C |
A |
. |
PASS |
0.6800000 |
0.2507000 |
0.0913000 |
0.1531000 |
0.0971000 |
0.2823000 |
34.75 |
70.0 |
25 |
520.43 |
15.50 |
64.00 |
0 |
64.00 |
0/1 |
| chr1 |
158985652 |
rs4262539 |
T |
C |
. |
PASS |
0.1135000 |
0.0764000 |
0.0000000 |
0.0895000 |
0.0644000 |
0.0711000 |
37.0 |
70.0 |
52 |
1000.00 |
10.34 |
55.77 |
0 |
55.77 |
0/1 |
| chr1 |
158985831 |
rs66519738 |
C |
T |
. |
PASS |
0.0280000 |
0.0706000 |
0.0000000 |
0.0885000 |
0.0644000 |
0.0475000 |
36.08 |
70.0 |
36 |
390.17 |
16.24 |
36.11 |
0 |
36.11 |
0/1 |
| chr1 |
158986477 |
rs866484 |
G |
C |
. |
PASS |
0.4123000 |
0.8444000 |
0.5933000 |
0.7853000 |
0.6820000 |
0.6362000 |
36.74 |
70.0 |
84 |
1000.00 |
5.90 |
54.76 |
0 |
54.76 |
0/1 |
| chr1 |
158986561 |
rs16841500 |
C |
T |
. |
PASS |
0.0038000 |
0.0562000 |
0.0000000 |
0.0616000 |
0.0143000 |
0.0240000 |
37.0 |
70.0 |
25 |
435.29 |
9.23 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
158988270 |
rs11539423 |
T |
C |
. |
PASS |
0.0174000 |
0.0591000 |
0.0000000 |
0.0636000 |
0.0164000 |
0.0288000 |
36.31 |
70.0 |
61 |
1000.00 |
11.05 |
57.38 |
0 |
57.38 |
0/1 |
| chr1 |
159002301 |
rs2518553 |
T |
C |
. |
PASS |
0.3192000 |
0.8689000 |
0.5873000 |
0.8380000 |
0.7117000 |
0.6302000 |
37.0 |
70.0 |
26 |
390.51 |
3.85 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
159002377 |
rs1057027 |
C |
A |
. |
PASS |
0.3207000 |
0.8689000 |
0.5883000 |
0.8380000 |
0.7127000 |
0.6310000 |
37.0 |
70.0 |
73 |
1000.00 |
0.60 |
43.84 |
0 |
46.58 |
0/1 |
| chr1 |
159002389 |
rs1057028 |
T |
A |
. |
PASS |
0.3207000 |
0.8689000 |
0.5873000 |
0.8380000 |
0.7127000 |
0.6308000 |
36.1 |
70.0 |
85 |
1000.00 |
7.94 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
159002557 |
rs1633256 |
A |
G |
. |
PASS |
0.3162000 |
0.8689000 |
0.5893000 |
0.8390000 |
0.7106000 |
0.6298000 |
37.0 |
70.0 |
16 |
295.30 |
5.56 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
159002577 |
rs58508050,rs147007436 |
TGGATTG |
T |
. |
PASS |
0.3154000 |
0.8689000 |
0.5893000 |
0.8390000 |
0.7096000 |
0.6294000 |
37.0 |
70.0 |
12 |
214.24 |
0.00 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
159019515 |
rs56016614 |
T |
A |
. |
PASS |
0.0953000 |
0.0490000 |
0.0000000 |
0.0447000 |
0.0102000 |
0.0429000 |
34.6 |
69.8 |
10 |
130.13 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
159021506 |
rs62621173 |
C |
T |
. |
PASS |
0.0121000 |
0.0432000 |
0.0000000 |
0.0417000 |
0.0102000 |
0.0195690 |
35.56 |
70.0 |
56 |
807.20 |
1.29 |
44.64 |
0 |
44.64 |
0/1 |
| chr1 |
159169641 |
rs862999 |
T |
C |
. |
PASS |
0.9123000 |
0.7205000 |
0.9276000 |
0.7425000 |
0.7914000 |
0.8311000 |
36.54 |
70.0 |
55 |
876.01 |
1.82 |
47.27 |
0 |
47.27 |
0/1 |
| chr1 |
159174824 |
rs863001 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.74 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159174885 |
rs7550207 |
T |
C |
. |
PASS |
0.1044000 |
0.1931000 |
0.0000000 |
0.2445000 |
0.0736000 |
0.1178000 |
37.0 |
70.0 |
14 |
176.01 |
0.00 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
159175354 |
rs12075 |
G |
A |
. |
PASS |
0.9811000 |
0.5389000 |
0.0774000 |
0.6024000 |
0.3599000 |
0.5405000 |
36.22 |
70.0 |
97 |
1000.00 |
1.03 |
47.42 |
0 |
47.42 |
0/1 |
| chr1 |
159182095 |
rs3027045 |
C |
T |
. |
PASS |
0.6384000 |
0.4539000 |
0.4702000 |
0.3668000 |
0.3916000 |
0.4762000 |
36.14 |
70.0 |
87 |
851.21 |
8.29 |
32.18 |
0 |
32.18 |
0/1 |
| chr1 |
159402584 |
rs11419544 |
G |
GT |
. |
PASS |
0.6884000 |
0.9640000 |
1.0000000 |
0.9761000 |
0.9857000 |
0.9052000 |
36.2 |
70.0 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159402695 |
rs4491058 |
A |
C |
. |
PASS |
0.7088000 |
0.9669000 |
1.0000000 |
0.9761000 |
0.9857000 |
0.9109000 |
36.59 |
69.66 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159409533 |
rs10908721 |
G |
A |
. |
PASS |
0.7088000 |
0.9654000 |
1.0000000 |
0.9761000 |
0.9857000 |
0.9107000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159409734 |
rs10908722 |
G |
T |
. |
PASS |
0.9569000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9882000 |
36.54 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159409857 |
rs12048482 |
A |
G |
. |
PASS |
0.4297000 |
0.5101000 |
0.2381000 |
0.6471000 |
0.6022000 |
0.4796000 |
37.0 |
70.0 |
55 |
971.56 |
1.95 |
50.91 |
0 |
50.91 |
0/1 |
| chr1 |
159410340 |
rs12409540 |
T |
A |
. |
PASS |
0.0265000 |
0.1571000 |
0.0278000 |
0.1322000 |
0.1207000 |
0.0845000 |
37.0 |
70.0 |
50 |
982.47 |
7.14 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
159505101 |
rs35393723 |
G |
A |
. |
PASS |
0.0257000 |
0.1556000 |
0.0248000 |
0.1869000 |
0.1411000 |
0.0984000 |
36.67 |
70.0 |
83 |
1000.00 |
8.23 |
43.37 |
0 |
43.37 |
0/1 |
| chr1 |
159505297 |
rs4656837 |
C |
T |
. |
PASS |
0.2943000 |
0.6614000 |
0.4940000 |
0.6948000 |
0.7403000 |
0.5529000 |
36.54 |
69.62 |
101 |
1000.00 |
0.99 |
51.49 |
0 |
51.49 |
0/1 |
| chr1 |
159652939 |
rs2592887 |
C |
T |
. |
PASS |
0.5000000 |
0.4265000 |
0.5645000 |
0.3917000 |
0.3548000 |
0.4527000 |
36.17 |
70.0 |
68 |
950.18 |
11.36 |
42.65 |
0 |
42.65 |
0/1 |
| chr1 |
159750802 |
rs3806189 |
G |
C |
. |
PASS |
0.0673000 |
0.2464000 |
0.1210000 |
0.1710000 |
0.1217000 |
0.1344000 |
37.0 |
70.0 |
22 |
356.64 |
9.09 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
159776366 |
rs61821626 |
G |
A |
. |
PASS |
0.0348000 |
0.0850000 |
0.0149000 |
0.1382000 |
0.0613000 |
0.0637000 |
37.0 |
68.46 |
25 |
435.30 |
11.69 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
159778910 |
rs72700615 |
G |
A |
. |
PASS |
0.0371000 |
0.0850000 |
0.0149000 |
0.1392000 |
0.0603000 |
0.0643000 |
36.5 |
68.83 |
54 |
795.47 |
2.78 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
159778983 |
rs12083967 |
T |
C |
. |
PASS |
0.5265000 |
0.2363000 |
0.1855000 |
0.1998000 |
0.1145000 |
0.2716000 |
37.0 |
68.92 |
52 |
855.28 |
7.54 |
48.08 |
0 |
48.08 |
0/1 |
| chr1 |
159784141 |
rs61821659 |
G |
A |
. |
PASS |
0.0204000 |
0.0836000 |
0.0149000 |
0.1402000 |
0.0665000 |
0.0611000 |
37.0 |
70.0 |
19 |
202.73 |
19.55 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
159784160 |
rs61823160 |
T |
C |
. |
PASS |
0.0083000 |
0.0836000 |
0.0149000 |
0.1412000 |
0.0654000 |
0.0579000 |
37.0 |
70.0 |
13 |
220.79 |
8.79 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
159785284 |
rs4411129 |
C |
G |
. |
PASS |
0.9614000 |
0.8184000 |
0.7867000 |
0.6948000 |
0.6687000 |
0.7957000 |
36.75 |
70.0 |
90 |
1000.00 |
2.50 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
159785413 |
rs61823162 |
C |
T |
. |
PASS |
0.0076000 |
0.0836000 |
0.0149000 |
0.1402000 |
0.0665000 |
0.0577000 |
36.52 |
70.0 |
70 |
789.08 |
0.57 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
159785425 |
rs4443889 |
A |
G |
. |
PASS |
0.4622000 |
0.2334000 |
0.1716000 |
0.2018000 |
0.1217000 |
0.2532000 |
36.54 |
70.0 |
67 |
839.88 |
5.74 |
38.81 |
0 |
38.81 |
0/1 |
| chr1 |
159785477 |
rs61823163 |
G |
A |
. |
PASS |
0.0204000 |
0.0850000 |
0.0149000 |
0.1402000 |
0.0665000 |
0.0613000 |
37.0 |
70.0 |
35 |
446.97 |
2.86 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
159785518 |
rs61823164 |
G |
C |
. |
PASS |
0.0204000 |
0.0836000 |
0.0149000 |
0.1412000 |
0.0665000 |
0.0613000 |
37.0 |
70.0 |
14 |
171.86 |
14.29 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
159799599 |
rs11422063 |
C |
CA |
. |
PASS |
0.9894000 |
0.8689000 |
0.8274000 |
0.8191000 |
0.8395000 |
0.8766000 |
36.39 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159824967 |
rs2501340 |
G |
C |
. |
PASS |
0.9939000 |
0.9063000 |
0.9474000 |
0.8598000 |
0.9202000 |
0.9311000 |
36.8 |
69.67 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159825004 |
rs72700643 |
C |
G |
. |
PASS |
0.0015000 |
0.0014000 |
0.0000000 |
0.0050000 |
0.0000000 |
0.0015974 |
37.0 |
69.43 |
73 |
1000.00 |
1.96 |
47.95 |
0 |
47.95 |
0/1 |
| chr1 |
159825061 |
rs2501339 |
G |
C |
. |
PASS |
0.9667000 |
0.4568000 |
0.6161000 |
0.4433000 |
0.5164000 |
0.6324000 |
36.43 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159826561 |
rs111861505 |
C |
CCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
10 |
265.89 |
2.22 |
90.00 |
0 |
90.00 |
0/1 |
| chr1 |
159827456 |
rs2494503 |
A |
G |
. |
PASS |
0.5590000 |
0.7550000 |
0.7192000 |
0.6730000 |
0.6616000 |
0.6613000 |
37.0 |
70.0 |
13 |
137.25 |
18.46 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
159827475 |
rs11584200 |
G |
A |
. |
PASS |
0.5166000 |
0.3012000 |
0.3800000 |
0.2584000 |
0.2679000 |
0.3588000 |
36.25 |
70.0 |
29 |
536.56 |
0.86 |
55.17 |
0 |
55.17 |
0/1 |
| chr1 |
159828128 |
rs2494504 |
A |
G |
. |
PASS |
0.9955000 |
0.8905000 |
0.9504000 |
0.8608000 |
0.9233000 |
0.9307000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159828746 |
rs2501337 |
G |
A |
. |
PASS |
0.4713000 |
0.7493000 |
0.7450000 |
0.6799000 |
0.6360000 |
0.6390000 |
37.0 |
70.0 |
27 |
512.81 |
14.81 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
159842691 |
rs4460634 |
C |
G |
. |
PASS |
0.3321000 |
0.7075000 |
0.7887000 |
0.6640000 |
0.6718000 |
0.6090000 |
37.0 |
70.0 |
17 |
413.45 |
19.61 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
159854251 |
rs16842789 |
T |
C |
. |
PASS |
0.2284000 |
0.0591000 |
0.0556000 |
0.0666000 |
0.0583000 |
0.1044000 |
37.0 |
70.0 |
60 |
1000.00 |
9.70 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
159854392 |
rs2501325 |
C |
A |
. |
PASS |
0.8343000 |
0.8228000 |
0.8433000 |
0.7604000 |
0.7403000 |
0.8013000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
159858290 |
rs3795334 |
T |
A |
. |
PASS |
0.3321000 |
0.0850000 |
0.0556000 |
0.0835000 |
0.0634000 |
0.1398000 |
37.0 |
70.0 |
22 |
273.09 |
6.06 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
159860259 |
rs2501320 |
G |
A |
. |
PASS |
0.0643000 |
0.1931000 |
0.2173000 |
0.3559000 |
0.1544000 |
0.1891000 |
36.23 |
70.0 |
57 |
1000.00 |
10.19 |
54.39 |
0 |
54.39 |
0/1 |
| chr1 |
159889686 |
rs2252815 |
G |
A |
. |
PASS |
0.3797000 |
0.6282000 |
0.6419000 |
0.5109000 |
0.4683000 |
0.5106000 |
37.0 |
70.0 |
28 |
509.80 |
8.57 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
159897126 |
rs13052 |
C |
T |
. |
PASS |
0.7663000 |
0.6268000 |
0.7143000 |
0.5547000 |
0.6299000 |
0.6673000 |
35.93 |
69.64 |
125 |
1000.00 |
4.00 |
44.80 |
0 |
44.80 |
0/1 |
| chr1 |
159897388 |
rs1934074 |
C |
T |
. |
PASS |
0.2859000 |
0.3804000 |
0.4444000 |
0.3698000 |
0.4499000 |
0.3798000 |
37.0 |
70.0 |
14 |
301.32 |
9.52 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
159897681 |
rs60386431 |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.53 |
70.0 |
38 |
1000.00 |
0.00 |
94.74 |
0 |
94.74 |
1/1 |
| chr1 |
159898100 |
rs3747615 |
A |
G |
. |
PASS |
0.3646000 |
0.5403000 |
0.6528000 |
0.4453000 |
0.5613000 |
0.5016000 |
35.8 |
70.0 |
31 |
685.61 |
0.32 |
64.52 |
0 |
64.52 |
0/1 |
| chr1 |
159902526 |
rs3827531 |
T |
C |
. |
PASS |
0.7632000 |
0.6383000 |
0.7113000 |
0.5547000 |
0.6380000 |
0.6691000 |
37.0 |
70.0 |
24 |
480.07 |
11.90 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
159906156 |
rs10908750 |
A |
G |
. |
PASS |
0.1543000 |
0.3646000 |
0.4613000 |
0.3509000 |
0.3722000 |
0.3273000 |
37.0 |
70.0 |
55 |
1000.00 |
2.84 |
58.18 |
0 |
58.18 |
0/1 |
| chr1 |
159907362 |
rs7524321 |
A |
G |
. |
PASS |
0.4160000 |
0.4092000 |
0.4643000 |
0.4016000 |
0.4029000 |
0.4193000 |
36.47 |
70.0 |
104 |
1000.00 |
2.69 |
43.27 |
0 |
43.27 |
0/1 |
| chr1 |
159907367 |
rs7526647 |
T |
C |
. |
PASS |
0.4191000 |
0.4092000 |
0.4653000 |
0.4016000 |
0.4029000 |
0.4203000 |
37.0 |
70.0 |
107 |
1000.00 |
4.97 |
41.12 |
0 |
41.12 |
0/1 |
| chr1 |
159923111 |
rs2789417 |
T |
G |
. |
PASS |
0.7474000 |
0.9409000 |
1.0000000 |
0.8966000 |
0.9274000 |
0.8902000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160000435 |
rs12409352 |
A |
T |
. |
PASS |
0.0091000 |
0.1182000 |
0.0357000 |
0.1292000 |
0.0828000 |
0.0681000 |
36.74 |
70.0 |
77 |
1000.00 |
5.65 |
59.74 |
0 |
59.74 |
0/1 |
| chr1 |
160062340 |
rs41265757 |
G |
A |
. |
PASS |
0.0091000 |
0.1643000 |
0.1786000 |
0.1004000 |
0.0685000 |
0.0946000 |
36.48 |
70.0 |
66 |
1000.00 |
3.56 |
69.70 |
0 |
69.70 |
0/1 |
| chr1 |
160062472 |
rs2295622 |
C |
T |
. |
PASS |
0.0189000 |
0.2507000 |
0.2252000 |
0.1869000 |
0.1636000 |
0.1546000 |
36.64 |
69.8 |
101 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160062727 |
rs2295621 |
A |
G |
. |
PASS |
0.0287000 |
0.2522000 |
0.2232000 |
0.1879000 |
0.1769000 |
0.1597000 |
36.62 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160090674 |
rs2854246 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
69.35 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160090681 |
rs67915591,rs373796693 |
CCCTT |
C |
. |
PASS |
0.3707000 |
0.9078000 |
0.8472000 |
0.8439000 |
0.6431000 |
0.6893000 |
35.2 |
69.43 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160093222 |
rs2820581 |
C |
T |
. |
PASS |
0.7995000 |
0.9827000 |
1.0000000 |
0.9970000 |
0.9918000 |
0.9425000 |
36.87 |
70.0 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160093648 |
rs41265763 |
G |
A |
. |
PASS |
0.0076000 |
0.1153000 |
0.1379000 |
0.1342000 |
0.0706000 |
0.0865000 |
37.0 |
68.18 |
17 |
375.83 |
2.14 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
160093911 |
rs2820582 |
T |
C |
. |
PASS |
0.8419000 |
0.9885000 |
1.0000000 |
0.9980000 |
0.9918000 |
0.9547000 |
37.0 |
69.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160093927 |
rs2854248 |
T |
A |
. |
PASS |
0.4758000 |
0.4755000 |
0.4732000 |
0.3638000 |
0.2423000 |
0.4071000 |
37.0 |
70.0 |
13 |
216.64 |
10.99 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
160095127 |
rs7548116 |
T |
A |
. |
PASS |
0.4766000 |
0.5144000 |
0.5228000 |
0.6282000 |
0.7638000 |
0.5777000 |
37.0 |
70.0 |
12 |
136.11 |
0.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
160097315 |
rs2295623 |
C |
A |
. |
PASS |
0.0091000 |
0.1095000 |
0.1409000 |
0.1233000 |
0.0552000 |
0.0815000 |
36.72 |
70.0 |
90 |
1000.00 |
6.56 |
47.78 |
0 |
47.78 |
0/1 |
| chr1 |
160097666 |
rs6695366 |
G |
A |
. |
PASS |
0.9418000 |
0.7190000 |
0.6637000 |
0.8350000 |
0.8487000 |
0.8153000 |
35.91 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160098927 |
rs5778151 |
A |
AG |
. |
PASS |
0.7239000 |
0.7233000 |
0.6677000 |
0.8628000 |
0.8609000 |
0.7672000 |
36.7 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160100201 |
rs17846713 |
C |
G |
. |
PASS |
0.0023000 |
0.0202000 |
0.0000000 |
0.0467000 |
0.0112000 |
0.0149760 |
37.0 |
70.0 |
50 |
857.14 |
4.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
160121746 |
rs746362 |
C |
T |
. |
PASS |
0.1316000 |
0.2738000 |
0.3125000 |
0.3012000 |
0.3804000 |
0.2704000 |
37.0 |
70.0 |
12 |
265.57 |
16.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
160124875 |
rs6427504 |
G |
A |
. |
PASS |
0.7458000 |
0.7104000 |
0.6835000 |
0.6958000 |
0.6166000 |
0.6931000 |
36.74 |
70.0 |
83 |
1000.00 |
6.31 |
56.63 |
0 |
56.63 |
0/1 |
| chr1 |
160128994 |
rs10908764 |
C |
T |
. |
PASS |
0.7474000 |
0.9006000 |
0.9950000 |
0.8539000 |
0.8957000 |
0.8688000 |
36.62 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160134205 |
rs11265338 |
C |
T |
. |
PASS |
0.3570000 |
0.6758000 |
0.5417000 |
0.6421000 |
0.5266000 |
0.5288000 |
37.0 |
68.97 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160136350 |
rs7529215 |
G |
A |
. |
PASS |
0.2806000 |
0.5375000 |
0.4851000 |
0.5457000 |
0.5757000 |
0.4683000 |
36.44 |
69.09 |
88 |
1000.00 |
7.29 |
48.86 |
0 |
48.86 |
0/1 |
| chr1 |
160137300 |
rs4656889 |
A |
C |
. |
PASS |
0.7042000 |
0.6081000 |
0.5268000 |
0.5318000 |
0.4836000 |
0.5775000 |
37.0 |
70.0 |
27 |
383.35 |
20.37 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
160141196 |
rs625549 |
C |
T |
. |
PASS |
0.9758000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9930000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160141284 |
. |
CCC |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
25 |
438.31 |
11.69 |
52.00 |
1 |
52.00 |
0/1 |
| chr1 |
160141286 |
rs625129 |
C |
G |
. |
PASS |
0.5696000 |
0.5648000 |
0.5615000 |
0.4891000 |
0.4059000 |
0.5192000 |
37.0 |
70.0 |
24 |
475.92 |
8.33 |
58.33 |
1 |
58.33 |
0/1 |
| chr1 |
160141636 |
rs1891265 |
C |
T |
. |
PASS |
0.6256000 |
0.4135000 |
0.1379000 |
0.5219000 |
0.5593000 |
0.4643000 |
35.4 |
70.0 |
20 |
509.87 |
0.00 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
160146173 |
rs881291 |
T |
C |
. |
PASS |
0.0499000 |
0.2723000 |
0.6240000 |
0.3280000 |
0.2761000 |
0.2963000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160147502 |
rs731852 |
T |
G |
. |
PASS |
0.8374000 |
0.7867000 |
0.8810000 |
0.6730000 |
0.7372000 |
0.7865000 |
35.55 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160147510 |
rs731853 |
G |
A |
. |
PASS |
0.0371000 |
0.2709000 |
0.6200000 |
0.3270000 |
0.2699000 |
0.2905000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160151345 |
rs113684338 |
CA |
C |
. |
PASS |
0.5915000 |
0.5245000 |
0.6280000 |
0.5388000 |
0.5470000 |
0.5703000 |
36.4 |
70.0 |
11 |
336.84 |
0.00 |
90.91 |
0 |
90.91 |
0/1 |
| chr1 |
160151421 |
rs11265350 |
G |
C |
. |
PASS |
0.0983000 |
0.2723000 |
0.6409000 |
0.3250000 |
0.2679000 |
0.3103000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160151450 |
rs7519748 |
T |
C |
. |
PASS |
0.8941000 |
0.7954000 |
0.8889000 |
0.6909000 |
0.7249000 |
0.8055000 |
35.5 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160151624 |
rs36097870 |
G |
GC |
. |
PASS |
0.6067000 |
0.7147000 |
0.8889000 |
0.5775000 |
0.6626000 |
0.6835000 |
36.65 |
69.81 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160156027 |
rs12131640 |
C |
G |
. |
PASS |
0.2436000 |
0.3314000 |
0.7054000 |
0.3529000 |
0.2761000 |
0.3770000 |
35.74 |
70.0 |
19 |
729.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160160865 |
rs41265773 |
C |
T |
. |
PASS |
0.0008000 |
0.0043000 |
0.0000000 |
0.0159000 |
0.0041000 |
0.0047923 |
37.0 |
70.0 |
14 |
217.78 |
28.57 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
160175210 |
rs17551437,rs34961337 |
A |
AGCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.89 |
70.0 |
19 |
742.56 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160178356 |
rs667306 |
A |
G |
. |
PASS |
0.9644000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9904000 |
36.41 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160236470 |
rs11265366 |
T |
A |
. |
PASS |
0.9115000 |
0.5951000 |
0.4484000 |
0.5696000 |
0.7301000 |
0.6703000 |
36.51 |
68.14 |
123 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160251792 |
rs2795067 |
A |
G |
. |
PASS |
0.9115000 |
0.5951000 |
0.4484000 |
0.5676000 |
0.7321000 |
0.6703000 |
36.21 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160260233 |
rs2298104 |
T |
C |
. |
PASS |
0.2224000 |
0.5187000 |
0.3264000 |
0.5089000 |
0.6350000 |
0.4225000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160263124 |
rs1317944 |
C |
T |
. |
PASS |
0.9115000 |
0.5965000 |
0.4435000 |
0.5666000 |
0.7311000 |
0.6691000 |
36.52 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160265515 |
rs3789042 |
T |
C |
. |
PASS |
0.3336000 |
0.5245000 |
0.3264000 |
0.5109000 |
0.6350000 |
0.4531000 |
36.41 |
69.84 |
122 |
1000.00 |
0.89 |
99.18 |
0 |
100.00 |
1/1 |
| chr1 |
160275434 |
rs2066320 |
A |
G |
. |
PASS |
0.9985000 |
0.9856000 |
1.0000000 |
0.9493000 |
0.9519000 |
0.9780000 |
35.24 |
69.41 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160302444 |
rs4656897 |
G |
A |
. |
PASS |
0.9115000 |
0.5937000 |
0.4395000 |
0.5666000 |
0.7331000 |
0.6683000 |
35.91 |
70.0 |
23 |
871.45 |
5.93 |
95.65 |
0 |
100.00 |
1/1 |
| chr1 |
160303416 |
rs1802778 |
G |
A |
. |
PASS |
0.9100000 |
0.5922000 |
0.4395000 |
0.5517000 |
0.7229000 |
0.6627000 |
35.5 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160309664 |
rs1886419 |
T |
G |
. |
PASS |
0.9123000 |
0.5951000 |
0.4385000 |
0.5626000 |
0.7311000 |
0.6673000 |
36.31 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160318940 |
rs6669689 |
A |
G |
. |
PASS |
0.5938000 |
0.4899000 |
0.4802000 |
0.5378000 |
0.6636000 |
0.5589000 |
37.0 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160318984 |
rs16831846 |
T |
C |
. |
PASS |
0.1641000 |
0.0677000 |
0.0000000 |
0.0586000 |
0.0072000 |
0.0659000 |
36.33 |
70.0 |
27 |
626.12 |
3.70 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
160386082 |
rs17371401 |
A |
G |
. |
PASS |
0.2118000 |
0.2075000 |
0.0883000 |
0.2545000 |
0.2812000 |
0.2085000 |
37.0 |
70.0 |
17 |
125.21 |
0.00 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
160393905 |
rs12086448 |
A |
G |
. |
PASS |
0.8003000 |
0.4524000 |
0.3710000 |
0.4970000 |
0.6564000 |
0.5767000 |
36.23 |
70.0 |
73 |
1000.00 |
0.09 |
42.47 |
0 |
42.47 |
0/1 |
| chr1 |
160394937 |
rs17380127 |
A |
C |
. |
PASS |
0.1702000 |
0.2075000 |
0.0843000 |
0.2783000 |
0.3119000 |
0.2075000 |
37.0 |
70.0 |
40 |
553.07 |
0.88 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
160395003 |
rs17380141 |
G |
A |
. |
PASS |
0.2375000 |
0.2190000 |
0.0843000 |
0.2793000 |
0.3119000 |
0.2270000 |
37.0 |
70.0 |
77 |
1000.00 |
4.03 |
49.35 |
0 |
49.35 |
0/1 |
| chr1 |
160458782 |
rs3795327 |
A |
G |
. |
PASS |
0.4841000 |
0.6052000 |
0.6230000 |
0.7087000 |
0.6984000 |
0.6158000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160519812 |
rs3832278 |
C |
CA |
. |
PASS |
0.4864000 |
0.2911000 |
0.2212000 |
0.3489000 |
0.1994000 |
0.3223000 |
37.0 |
70.0 |
23 |
826.12 |
4.74 |
95.65 |
0 |
95.65 |
1/1 |
| chr1 |
160519815 |
rs58960001 |
C |
CT |
. |
PASS |
0.4856000 |
0.2911000 |
0.2212000 |
0.3489000 |
0.1994000 |
0.3221000 |
35.91 |
70.0 |
23 |
790.08 |
4.74 |
95.65 |
0 |
95.65 |
1/1 |
| chr1 |
160545284 |
rs5778167,rs5778168 |
A |
AAC |
. |
PASS |
0.3548000 |
0.4510000 |
0.5784000 |
0.5239000 |
0.4755000 |
0.4706000 |
37.0 |
70.0 |
14 |
118.66 |
28.57 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
160650792 |
rs3835477 |
GC |
G |
. |
PASS |
0.8812000 |
0.7536000 |
0.5972000 |
0.8171000 |
0.8742000 |
0.7921000 |
36.57 |
70.0 |
52 |
380.24 |
4.40 |
26.92 |
0 |
26.92 |
0/1 |
| chr1 |
160650913 |
rs4656926 |
A |
G |
. |
PASS |
0.3767000 |
0.9539000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.8287000 |
36.91 |
69.85 |
130 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160722064 |
rs527342 |
A |
G |
. |
PASS |
0.7542000 |
0.9640000 |
0.9683000 |
0.9771000 |
0.9468000 |
0.9087000 |
36.37 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160766179 |
rs3831924 |
C |
CT |
. |
PASS |
0.3374000 |
0.6599000 |
0.6071000 |
0.7197000 |
0.4765000 |
0.5403000 |
37.0 |
70.0 |
26 |
291.39 |
3.08 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
160771761 |
rs1556517 |
C |
A |
. |
PASS |
0.0272000 |
0.3876000 |
0.2867000 |
0.2316000 |
0.2372000 |
0.2115000 |
36.4 |
70.0 |
34 |
684.44 |
1.18 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
160786670 |
rs560681 |
A |
G |
. |
PASS |
0.3079000 |
0.3055000 |
0.3681000 |
0.2773000 |
0.4294000 |
0.3373000 |
37.0 |
70.0 |
21 |
447.33 |
0.73 |
61.90 |
0 |
61.90 |
0/1 |
| chr1 |
160788131 |
rs3817407 |
T |
C |
. |
PASS |
0.4206000 |
0.4352000 |
0.3373000 |
0.2416000 |
0.3517000 |
0.3564000 |
36.77 |
70.0 |
95 |
1000.00 |
5.84 |
55.79 |
0 |
55.79 |
0/1 |
| chr1 |
160788217 |
rs575217 |
T |
A |
. |
PASS |
0.2905000 |
0.3012000 |
0.3661000 |
0.2763000 |
0.4427000 |
0.3341000 |
36.25 |
70.0 |
26 |
541.44 |
0.96 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
160789196 |
rs537540 |
A |
C |
. |
PASS |
0.9713000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9924000 |
37.0 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160793442 |
rs474131 |
A |
G |
. |
PASS |
0.6884000 |
0.6643000 |
0.7034000 |
0.4493000 |
0.6483000 |
0.6322000 |
36.64 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160793560 |
rs509749 |
A |
G |
. |
PASS |
0.7912000 |
0.6686000 |
0.7034000 |
0.4503000 |
0.6483000 |
0.6601000 |
36.63 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160793962 |
rs506081 |
G |
C |
. |
PASS |
0.7027000 |
0.6643000 |
0.7034000 |
0.4493000 |
0.6483000 |
0.6360000 |
37.0 |
70.0 |
21 |
837.55 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160797514 |
rs576334 |
C |
G |
. |
PASS |
0.6641000 |
0.6628000 |
0.6954000 |
0.4672000 |
0.6575000 |
0.6294000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160797684 |
rs574610 |
A |
G |
. |
PASS |
0.5613000 |
0.6571000 |
0.6954000 |
0.4672000 |
0.6575000 |
0.6014000 |
36.68 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160801046 |
rs480104 |
C |
G |
. |
PASS |
0.1725000 |
0.2248000 |
0.3760000 |
0.2008000 |
0.3282000 |
0.2568000 |
36.14 |
70.0 |
26 |
457.90 |
24.18 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
160803802 |
rs11265493 |
A |
G |
. |
PASS |
0.3449000 |
0.5980000 |
0.4583000 |
0.6044000 |
0.5920000 |
0.5032000 |
36.4 |
70.0 |
57 |
1000.00 |
12.28 |
70.18 |
0 |
70.18 |
0/1 |
| chr1 |
160848993 |
rs3766357 |
G |
A |
. |
PASS |
0.2595000 |
0.6974000 |
0.6935000 |
0.6779000 |
0.6288000 |
0.5637000 |
37.0 |
70.0 |
13 |
137.25 |
15.38 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
160849030 |
rs3766358 |
T |
A |
. |
PASS |
0.3154000 |
0.7003000 |
0.6935000 |
0.6779000 |
0.6278000 |
0.5787000 |
35.8 |
70.0 |
31 |
275.76 |
8.39 |
32.26 |
0 |
32.26 |
0/1 |
| chr1 |
160849060 |
rs3766359 |
G |
A |
. |
PASS |
0.2579000 |
0.6960000 |
0.6954000 |
0.6779000 |
0.6278000 |
0.5633000 |
35.43 |
70.0 |
54 |
729.68 |
21.58 |
42.59 |
0 |
42.59 |
0/1 |
| chr1 |
160849082 |
rs3820094 |
A |
G |
. |
PASS |
0.4750000 |
0.7190000 |
0.6974000 |
0.6799000 |
0.7004000 |
0.6388000 |
36.68 |
70.0 |
86 |
1000.00 |
6.60 |
43.02 |
0 |
43.02 |
0/1 |
| chr1 |
160850280 |
rs4656957 |
G |
A |
. |
PASS |
0.5802000 |
0.7248000 |
0.6974000 |
0.6799000 |
0.7004000 |
0.6673000 |
37.0 |
70.0 |
13 |
95.48 |
15.38 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
160850936 |
rs2236515 |
T |
C |
. |
PASS |
0.5968000 |
0.7277000 |
0.6974000 |
0.6799000 |
0.7014000 |
0.6723000 |
37.0 |
70.0 |
147 |
1000.00 |
3.44 |
57.82 |
0 |
57.82 |
0/1 |
| chr1 |
160851826 |
rs2274907 |
A |
T |
. |
PASS |
0.3275000 |
0.6960000 |
0.6935000 |
0.6779000 |
0.6278000 |
0.5813000 |
36.44 |
68.81 |
256 |
1000.00 |
4.28 |
42.19 |
0 |
42.19 |
0/1 |
| chr1 |
160851894 |
rs2274908 |
G |
A |
. |
PASS |
0.3147000 |
0.6945000 |
0.6944000 |
0.6779000 |
0.6278000 |
0.5779000 |
36.27 |
69.0 |
285 |
1000.00 |
0.99 |
45.96 |
0 |
45.96 |
0/1 |
| chr1 |
160852022 |
rs2274909 |
C |
T |
. |
PASS |
0.2769000 |
0.6931000 |
0.6935000 |
0.6779000 |
0.6278000 |
0.5675000 |
36.77 |
69.11 |
125 |
1000.00 |
12.20 |
42.40 |
0 |
42.40 |
0/1 |
| chr1 |
160852046 |
rs2274910 |
T |
C |
. |
PASS |
0.2769000 |
0.6931000 |
0.6935000 |
0.6779000 |
0.6278000 |
0.5675000 |
37.0 |
68.67 |
76 |
991.89 |
4.56 |
39.47 |
0 |
39.47 |
0/1 |
| chr1 |
160854526 |
rs2297559 |
G |
A |
. |
PASS |
0.5492000 |
0.7277000 |
0.7371000 |
0.6849000 |
0.7065000 |
0.6697000 |
37.0 |
70.0 |
20 |
492.11 |
15.71 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
160864754 |
rs6658416 |
A |
G |
. |
PASS |
0.2958000 |
0.6945000 |
0.6379000 |
0.6779000 |
0.5695000 |
0.5501000 |
37.0 |
69.79 |
84 |
1000.00 |
6.52 |
45.24 |
0 |
45.24 |
0/1 |
| chr1 |
160917902 |
rs1556519 |
T |
C |
. |
PASS |
0.0439000 |
0.3890000 |
0.2520000 |
0.3201000 |
0.3190000 |
0.2428000 |
37.0 |
70.0 |
12 |
140.26 |
33.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
160920809 |
rs3829790 |
A |
G |
. |
PASS |
0.2383000 |
0.6239000 |
0.5694000 |
0.5736000 |
0.5184000 |
0.4804000 |
36.86 |
69.41 |
178 |
1000.00 |
2.12 |
49.44 |
0 |
49.44 |
0/1 |
| chr1 |
160920813 |
rs790059 |
A |
G |
. |
PASS |
1.0000000 |
0.9986000 |
1.0000000 |
0.9960000 |
1.0000000 |
0.9990000 |
36.56 |
69.71 |
189 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160920966 |
rs6680969 |
C |
T |
. |
PASS |
0.3101000 |
0.6066000 |
0.5635000 |
0.5736000 |
0.4796000 |
0.4882000 |
36.08 |
68.85 |
326 |
1000.00 |
1.34 |
47.85 |
0 |
47.85 |
0/1 |
| chr1 |
160968609 |
rs41269993 |
G |
A |
. |
PASS |
0.0393000 |
0.2723000 |
0.2024000 |
0.2992000 |
0.1329000 |
0.1749000 |
36.27 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160969110 |
rs2297222 |
T |
C |
. |
PASS |
0.0514000 |
0.2752000 |
0.2024000 |
0.2992000 |
0.1329000 |
0.1785000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160969585 |
rs790056 |
C |
T |
. |
PASS |
0.9433000 |
0.8069000 |
0.8343000 |
0.7903000 |
0.7863000 |
0.8411000 |
36.12 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160969930 |
rs869985 |
A |
C |
. |
PASS |
0.0514000 |
0.2752000 |
0.2014000 |
0.2992000 |
0.1339000 |
0.1785000 |
36.56 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160970089 |
rs72712862 |
C |
T |
. |
PASS |
0.0000000 |
0.0058000 |
0.0000000 |
0.0089000 |
0.0000000 |
0.0025959 |
37.0 |
70.0 |
73 |
1000.00 |
1.48 |
50.68 |
0 |
50.68 |
0/1 |
| chr1 |
160970968 |
rs2297221 |
G |
A |
. |
PASS |
0.0514000 |
0.2752000 |
0.2014000 |
0.2992000 |
0.1339000 |
0.1785000 |
35.67 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160971015 |
rs2297220 |
G |
C |
. |
PASS |
0.0514000 |
0.2752000 |
0.2014000 |
0.2992000 |
0.1339000 |
0.1785000 |
37.0 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160971146 |
rs790055 |
A |
G |
. |
PASS |
0.9206000 |
0.8040000 |
0.8343000 |
0.7913000 |
0.7607000 |
0.8299000 |
36.78 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160971155 |
rs2297219 |
G |
C |
. |
PASS |
0.0514000 |
0.2752000 |
0.2014000 |
0.2992000 |
0.1329000 |
0.1783000 |
36.77 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
160990906 |
rs2481085 |
G |
A |
. |
PASS |
0.1513000 |
0.2839000 |
0.2024000 |
0.2922000 |
0.1319000 |
0.2045000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161010762 |
rs2073658 |
C |
T |
. |
PASS |
0.0393000 |
0.2651000 |
0.1925000 |
0.2942000 |
0.1339000 |
0.1711000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161010774 |
rs2516841 |
A |
G |
. |
PASS |
0.8154000 |
0.7824000 |
0.8294000 |
0.7614000 |
0.7055000 |
0.7814000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161011317 |
rs2516840 |
A |
G |
. |
PASS |
0.8449000 |
0.7522000 |
0.8294000 |
0.7306000 |
0.6912000 |
0.7760000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161011355 |
rs2073656 |
G |
C |
. |
PASS |
0.0393000 |
0.2651000 |
0.1925000 |
0.2942000 |
0.1339000 |
0.1711000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161011716 |
rs2774276 |
G |
C |
. |
PASS |
0.8154000 |
0.7824000 |
0.8284000 |
0.7614000 |
0.7076000 |
0.7815000 |
37.0 |
70.0 |
21 |
837.55 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161012590 |
rs2073655 |
G |
A |
. |
PASS |
0.0393000 |
0.2651000 |
0.1935000 |
0.2942000 |
0.1636000 |
0.1771000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161013121 |
rs2516839 |
C |
T |
. |
PASS |
0.1846000 |
0.4654000 |
0.3333000 |
0.6292000 |
0.4611000 |
0.3968000 |
37.0 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161019040 |
rs3813609 |
G |
C |
. |
PASS |
0.1815000 |
0.4654000 |
0.3333000 |
0.6292000 |
0.4611000 |
0.3960000 |
36.88 |
69.79 |
97 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161020997 |
rs55728374 |
C |
T |
. |
PASS |
0.0393000 |
0.2651000 |
0.1944000 |
0.2962000 |
0.1350000 |
0.1721000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161022380 |
rs4396136 |
G |
A |
. |
PASS |
0.8941000 |
0.7536000 |
0.7083000 |
0.7913000 |
0.7219000 |
0.7829000 |
35.97 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161022639 |
rs3813610 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
69.57 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161049358 |
rs3820097 |
G |
A |
. |
PASS |
0.9871000 |
0.8775000 |
0.6756000 |
0.9105000 |
0.8170000 |
0.8606000 |
36.41 |
69.8 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161068836 |
rs11576830 |
A |
C |
. |
PASS |
0.0666000 |
0.2968000 |
0.3710000 |
0.3390000 |
0.1933000 |
0.2392000 |
36.54 |
70.0 |
61 |
853.80 |
7.19 |
42.62 |
0 |
42.62 |
0/1 |
| chr1 |
161089450 |
rs111473243,rs71090366 |
C |
CTAAACT |
. |
PASS |
0.2398000 |
0.3746000 |
0.4494000 |
0.4006000 |
0.3640000 |
0.3572000 |
36.23 |
70.0 |
74 |
1000.00 |
0.75 |
48.65 |
0 |
50.00 |
0/1 |
| chr1 |
161126975 |
rs12031437 |
C |
G |
. |
PASS |
0.2322000 |
0.3746000 |
0.4494000 |
0.3996000 |
0.3620000 |
0.3546000 |
37.0 |
70.0 |
22 |
314.87 |
18.18 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
161130701 |
rs34779722 |
C |
T |
. |
PASS |
0.0015000 |
0.0144000 |
0.0000000 |
0.0288000 |
0.0072000 |
0.0095847 |
37.0 |
70.0 |
97 |
1000.00 |
11.92 |
42.27 |
0 |
42.27 |
0/1 |
| chr1 |
161136843 |
rs2301287 |
C |
G |
. |
PASS |
0.2315000 |
0.3761000 |
0.4474000 |
0.4006000 |
0.3569000 |
0.3534000 |
37.0 |
70.0 |
14 |
255.41 |
14.29 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
161143312 |
rs11579514 |
T |
C |
. |
PASS |
0.1097000 |
0.3098000 |
0.3839000 |
0.3201000 |
0.2065000 |
0.2538000 |
35.8 |
70.0 |
14 |
331.09 |
5.71 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
161160872 |
rs34884997 |
T |
C |
. |
PASS |
0.0333000 |
0.2305000 |
0.3621000 |
0.1551000 |
0.1022000 |
0.1647000 |
36.4 |
70.0 |
44 |
658.49 |
10.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
161162173 |
rs7512012 |
G |
A |
. |
PASS |
0.5991000 |
0.7089000 |
0.8859000 |
0.6054000 |
0.7802000 |
0.7087000 |
37.0 |
70.0 |
11 |
59.73 |
0.00 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
161163037 |
rs4233367 |
T |
C |
. |
PASS |
0.5893000 |
0.7089000 |
0.8859000 |
0.6093000 |
0.7802000 |
0.7069000 |
36.76 |
70.0 |
100 |
1000.00 |
3.88 |
51.00 |
0 |
51.00 |
0/1 |
| chr1 |
161163633 |
rs3813622 |
C |
T |
. |
PASS |
0.5893000 |
0.7061000 |
0.8909000 |
0.5875000 |
0.7771000 |
0.7025000 |
36.64 |
70.0 |
72 |
1000.00 |
5.81 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
161167698 |
rs4589131 |
T |
G |
. |
PASS |
0.6392000 |
0.7089000 |
0.8909000 |
0.5895000 |
0.7761000 |
0.7163000 |
37.0 |
70.0 |
10 |
225.67 |
8.57 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
161168004 |
rs33941127 |
C |
T |
. |
PASS |
0.4145000 |
0.3141000 |
0.4494000 |
0.2087000 |
0.4080000 |
0.3650000 |
36.68 |
70.0 |
71 |
1000.00 |
9.06 |
52.11 |
0 |
52.11 |
0/1 |
| chr1 |
161176137 |
rs4656993 |
A |
G |
. |
PASS |
0.6097000 |
0.6902000 |
0.8909000 |
0.5825000 |
0.7761000 |
0.7045000 |
35.67 |
70.0 |
19 |
274.26 |
9.36 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
161184097 |
rs1136224 |
A |
G |
. |
PASS |
0.0287000 |
0.2176000 |
0.2758000 |
0.1521000 |
0.2986000 |
0.1821000 |
37.0 |
70.0 |
13 |
220.79 |
15.38 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
161185058 |
rs2070901 |
G |
T |
. |
PASS |
0.4334000 |
0.3660000 |
0.4464000 |
0.2694000 |
0.4182000 |
0.3908000 |
37.0 |
70.0 |
34 |
529.36 |
0.74 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
161188649 |
rs41270849 |
G |
A |
. |
PASS |
0.0023000 |
0.0245000 |
0.0000000 |
0.0567000 |
0.0041000 |
0.0161740 |
35.4 |
70.0 |
29 |
482.78 |
11.03 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
161192845 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.63 |
70.0 |
95 |
1000.00 |
5.26 |
80.00 |
1 |
80.00 |
0/1 |
| chr1 |
161192845 |
rs72374375 |
CCACACACACACA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.52 |
70.0 |
93 |
1000.00 |
3.23 |
66.67 |
1 |
80.65 |
0/1 |
| chr1 |
161192846 |
rs72170134 |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.63 |
70.0 |
95 |
1000.00 |
5.26 |
80.00 |
1 |
80.00 |
0/1 |
| chr1 |
161200586 |
rs2307418 |
T |
G |
. |
PASS |
0.0068000 |
0.0836000 |
0.0923000 |
0.1491000 |
0.1063000 |
0.0827000 |
37.0 |
70.0 |
72 |
1000.00 |
0.56 |
48.61 |
0 |
48.61 |
0/1 |
| chr1 |
161201350 |
rs11265567 |
G |
T |
. |
PASS |
0.1067000 |
0.3271000 |
0.5218000 |
0.3499000 |
0.4540000 |
0.3375000 |
37.0 |
70.0 |
10 |
100.36 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
161201352 |
rs11265568 |
G |
A |
. |
PASS |
0.1067000 |
0.3271000 |
0.5218000 |
0.3499000 |
0.4540000 |
0.3375000 |
37.0 |
70.0 |
10 |
104.51 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
161202605 |
rs2307424 |
G |
A |
. |
PASS |
0.1067000 |
0.3256000 |
0.5188000 |
0.3489000 |
0.4530000 |
0.3363000 |
36.43 |
70.0 |
83 |
1000.00 |
1.23 |
49.40 |
0 |
50.60 |
0/1 |
| chr1 |
161228800 |
rs4078110 |
C |
T |
. |
PASS |
0.1929000 |
0.3184000 |
0.3581000 |
0.2306000 |
0.3252000 |
0.2770000 |
37.0 |
70.0 |
60 |
998.27 |
0.34 |
48.33 |
0 |
48.33 |
0/1 |
| chr1 |
161239143 |
rs2502812 |
A |
G |
. |
PASS |
0.6233000 |
0.5375000 |
0.5000000 |
0.4056000 |
0.3558000 |
0.4906000 |
36.72 |
70.0 |
101 |
1000.00 |
2.72 |
42.57 |
0 |
42.57 |
0/1 |
| chr1 |
161253657 |
rs4255401 |
C |
T |
. |
PASS |
0.5514000 |
0.5807000 |
0.6567000 |
0.4036000 |
0.4744000 |
0.5319000 |
37.0 |
70.0 |
10 |
104.51 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
161276376 |
rs6685495 |
G |
A |
. |
PASS |
0.3275000 |
0.1599000 |
0.1399000 |
0.2157000 |
0.2055000 |
0.2202000 |
37.0 |
70.0 |
13 |
262.57 |
32.69 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
161276434 |
rs6674383 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.6 |
69.33 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161475750 |
rs10494360 |
G |
A |
. |
PASS |
0.0121000 |
0.0720000 |
0.0010000 |
0.1421000 |
0.0746000 |
0.0565000 |
35.34 |
70.0 |
39 |
1000.00 |
4.42 |
74.36 |
0 |
74.36 |
0/1 |
| chr1 |
161476203 |
rs201218628 |
CCA |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.41 |
69.52 |
191 |
1000.00 |
7.12 |
48.17 |
0 |
48.17 |
0/1 |
| chr1 |
161476533 |
rs9427399 |
T |
C |
. |
PASS |
0.0499000 |
0.0749000 |
0.0010000 |
0.1421000 |
0.0746000 |
0.0669000 |
32.2 |
70.0 |
13 |
113.23 |
0.00 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
161479599 |
rs7529425 |
G |
A |
. |
PASS |
0.0477000 |
0.0749000 |
0.0010000 |
0.1441000 |
0.0746000 |
0.0667000 |
37.0 |
70.0 |
98 |
1000.00 |
14.29 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
161479745 |
rs1801274 |
A |
G |
. |
PASS |
0.5257000 |
0.4510000 |
0.2778000 |
0.5109000 |
0.4192000 |
0.4417000 |
36.86 |
69.98 |
183 |
1000.00 |
2.03 |
45.90 |
0 |
45.90 |
0/1 |
| chr1 |
161480649 |
rs11810143 |
A |
G |
. |
PASS |
0.0061000 |
0.0735000 |
0.0010000 |
0.1431000 |
0.0746000 |
0.0553000 |
36.65 |
69.86 |
110 |
1000.00 |
5.77 |
62.73 |
0 |
62.73 |
0/1 |
| chr1 |
161481561 |
rs10800357 |
C |
T |
. |
PASS |
0.3336000 |
0.4294000 |
0.3403000 |
0.3678000 |
0.3804000 |
0.3642000 |
37.0 |
70.0 |
43 |
506.42 |
8.43 |
37.21 |
0 |
37.21 |
0/1 |
| chr1 |
161483484 |
rs373579 |
A |
G |
. |
PASS |
0.0053000 |
0.0778000 |
0.0069000 |
0.1471000 |
0.0767000 |
0.0581000 |
36.78 |
58.96 |
74 |
1000.00 |
2.90 |
72.97 |
0 |
72.97 |
0/1 |
| chr1 |
161483579 |
rs383958 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
39.57 |
33 |
160.60 |
33.77 |
21.21 |
0 |
21.21 |
0/1 |
| chr1 |
161483656 |
rs56157533 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.77 |
135 |
814.31 |
8.15 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
161483750 |
rs395463 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.86 |
114 |
209.20 |
25.31 |
12.28 |
0 |
12.28 |
0/1 |
| chr1 |
161487688 |
rs55703527 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
44.0 |
26 |
56.35 |
19.23 |
15.38 |
0 |
15.38 |
0/1 |
| chr1 |
161495477 |
rs72633678 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.83 |
68.76 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161495885 |
rs404508 |
T |
C |
. |
PASS |
0.7791000 |
0.7233000 |
0.9117000 |
0.7883000 |
0.7853000 |
0.8011000 |
35.89 |
69.35 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161514542 |
rs396991 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
62.92 |
124 |
1000.00 |
3.43 |
31.45 |
0 |
31.45 |
0/1 |
| chr1 |
161518172 |
rs147342954 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.5 |
35 |
446.96 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
161518333 |
rs10127939 |
A |
T |
. |
PASS |
0.0651000 |
0.0476000 |
0.0010000 |
0.0805000 |
0.0450000 |
0.0389000 |
36.84 |
69.15 |
125 |
1000.00 |
3.07 |
58.40 |
0 |
58.40 |
0/1 |
| chr1 |
161519411 |
rs10917571 |
C |
A |
. |
PASS |
0.2073000 |
0.3818000 |
0.3651000 |
0.4235000 |
0.3804000 |
0.3405000 |
37.0 |
70.0 |
44 |
708.12 |
11.04 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
161559327 |
rs3933769 |
A |
G |
. |
PASS |
0.5779000 |
0.7896000 |
0.7341000 |
0.7376000 |
0.7403000 |
0.7025000 |
36.14 |
68.86 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161561236 |
rs143998157 |
C |
T |
. |
PASS |
0.2073000 |
0.2406000 |
0.0982000 |
0.3360000 |
0.2536000 |
0.2248000 |
36.14 |
64.25 |
29 |
1000.00 |
5.17 |
96.55 |
0 |
96.55 |
1/1 |
| chr1 |
161563281 |
rs149146947 |
A |
AG |
. |
PASS |
0.0098000 |
0.0793000 |
0.0010000 |
0.1372000 |
0.0624000 |
0.0535000 |
37.0 |
68.0 |
47 |
771.20 |
10.73 |
48.94 |
0 |
48.94 |
0/1 |
| chr1 |
161565324 |
rs61801822 |
C |
T |
. |
PASS |
0.5325000 |
0.7983000 |
0.7272000 |
0.7584000 |
0.7638000 |
0.6991000 |
34.94 |
67.11 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161565381 |
rs76277413 |
A |
G |
. |
PASS |
0.0166000 |
0.0850000 |
0.0010000 |
0.1431000 |
0.0624000 |
0.0573000 |
35.8 |
68.7 |
52 |
216.70 |
56.15 |
19.23 |
0 |
19.23 |
0/1 |
| chr1 |
161576227 |
rs145679054 |
C |
G |
. |
PASS |
0.6112000 |
0.7421000 |
0.6567000 |
0.7068000 |
0.6329000 |
0.6619000 |
37.0 |
63.13 |
23 |
921.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161577657 |
rs61802306 |
G |
A |
. |
PASS |
0.2375000 |
0.2925000 |
0.2728000 |
0.3738000 |
0.2710000 |
0.2861000 |
37.0 |
68.11 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161577669 |
rs61802307 |
G |
A |
. |
PASS |
0.6195000 |
0.7392000 |
0.6577000 |
0.7048000 |
0.6258000 |
0.6621000 |
36.13 |
68.58 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161594226 |
rs61803008 |
C |
T |
. |
PASS |
0.8737000 |
0.9452000 |
0.7411000 |
0.9990000 |
0.9448000 |
0.8960000 |
36.27 |
67.91 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161594246 |
rs61803009 |
G |
T |
. |
PASS |
0.8737000 |
0.9452000 |
0.7411000 |
0.9990000 |
0.9448000 |
0.8960000 |
36.31 |
66.87 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161594524 |
rs71485860 |
AGT |
ACG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
12 |
395.82 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161596283 |
rs418215 |
G |
A |
. |
PASS |
0.7897000 |
0.9380000 |
0.7450000 |
0.9881000 |
0.9468000 |
0.8718000 |
37.0 |
63.34 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161599693 |
rs76714703 |
T |
C |
. |
PASS |
0.5628000 |
0.4827000 |
0.3383000 |
0.6640000 |
0.5941000 |
0.5329000 |
36.64 |
57.36 |
99 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161600104 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
35.9 |
93 |
50.42 |
23.66 |
9.68 |
0 |
10.75 |
0/1 |
| chr1 |
161600287 |
rs143868437 |
AT |
A |
. |
PASS |
0.3313000 |
0.3199000 |
0.2817000 |
0.5189000 |
0.5409000 |
0.3984000 |
37.0 |
70.0 |
27 |
127.32 |
14.81 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
161600345 |
rs145831350 |
C |
T |
. |
PASS |
0.3638000 |
0.4597000 |
0.3393000 |
0.6163000 |
0.5777000 |
0.4647000 |
34.6 |
66.8 |
10 |
134.27 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
161600787 |
rs3883928 |
G |
C |
. |
PASS |
0.8835000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9681000 |
36.77 |
67.66 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161600832 |
rs3883934 |
G |
T |
. |
PASS |
0.4410000 |
0.4798000 |
0.3393000 |
0.6620000 |
0.5941000 |
0.5002000 |
36.45 |
67.86 |
132 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161601097 |
rs67020125 |
C |
A |
. |
PASS |
0.0885000 |
0.0533000 |
0.1607000 |
0.0885000 |
0.0685000 |
0.0942000 |
37.0 |
70.0 |
87 |
1000.00 |
12.64 |
45.98 |
0 |
45.98 |
0/1 |
| chr1 |
161601133 |
rs61803027 |
T |
C |
. |
PASS |
0.8873000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9690000 |
36.37 |
69.99 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161644955 |
rs7532925 |
G |
A |
. |
PASS |
0.0598000 |
0.0605000 |
0.1865000 |
0.1083000 |
0.0910000 |
0.1012000 |
35.8 |
67.9 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161645010 |
rs6427615 |
C |
A |
. |
PASS |
0.2443000 |
0.0865000 |
0.2510000 |
0.1233000 |
0.1411000 |
0.1793000 |
35.2 |
65.5 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161654693 |
rs1256287 |
A |
G |
. |
PASS |
0.3790000 |
0.6859000 |
0.7242000 |
0.6024000 |
0.6002000 |
0.5791000 |
36.25 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161654843 |
rs1256288 |
C |
G |
. |
PASS |
0.7050000 |
0.7853000 |
0.7401000 |
0.7177000 |
0.7260000 |
0.7298000 |
36.72 |
68.74 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161676970 |
rs1340978 |
A |
G |
. |
PASS |
0.5953000 |
0.5101000 |
0.8254000 |
0.6879000 |
0.5481000 |
0.6392000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161680258 |
rs6427618 |
G |
A |
. |
PASS |
0.1838000 |
0.4827000 |
0.3601000 |
0.6561000 |
0.6319000 |
0.4431000 |
36.64 |
70.0 |
80 |
1000.00 |
5.53 |
41.25 |
0 |
41.25 |
0/1 |
| chr1 |
161681661 |
rs1105238 |
C |
G |
. |
PASS |
0.6619000 |
0.4496000 |
0.5734000 |
0.2068000 |
0.2822000 |
0.4491000 |
37.0 |
70.0 |
13 |
91.33 |
3.85 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
161681780 |
rs2275603 |
A |
G |
. |
PASS |
0.7640000 |
0.4553000 |
0.5734000 |
0.2078000 |
0.2822000 |
0.4770000 |
35.5 |
70.0 |
83 |
1000.00 |
10.32 |
38.55 |
0 |
38.55 |
0/1 |
| chr1 |
161683136 |
rs11746 |
G |
A |
. |
PASS |
0.0469000 |
0.3444000 |
0.2371000 |
0.5129000 |
0.4417000 |
0.2971000 |
37.0 |
70.0 |
54 |
765.72 |
19.16 |
42.59 |
0 |
42.59 |
0/1 |
| chr1 |
161695639 |
rs7520519 |
G |
T |
. |
PASS |
0.9894000 |
0.9352000 |
1.0000000 |
0.8797000 |
0.8139000 |
0.9277000 |
36.46 |
69.7 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161696782 |
rs11585450 |
G |
C |
. |
PASS |
0.0552000 |
0.3775000 |
0.2629000 |
0.5258000 |
0.4560000 |
0.3145000 |
35.38 |
69.46 |
74 |
1000.00 |
13.51 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
161696900 |
rs6658140 |
A |
T |
. |
PASS |
0.6505000 |
0.1686000 |
0.5139000 |
0.1561000 |
0.1963000 |
0.3682000 |
37.0 |
70.0 |
11 |
97.35 |
18.18 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
161696998 |
rs1875763 |
C |
G |
. |
PASS |
0.0998000 |
0.3847000 |
0.2401000 |
0.5239000 |
0.4550000 |
0.3221000 |
36.48 |
68.26 |
38 |
797.71 |
4.35 |
60.53 |
0 |
60.53 |
0/1 |
| chr1 |
161697072 |
rs72704099 |
G |
C |
. |
PASS |
0.6520000 |
0.0951000 |
0.4266000 |
0.0606000 |
0.1493000 |
0.3125000 |
36.8 |
70.0 |
123 |
1000.00 |
1.30 |
47.97 |
0 |
47.97 |
0/1 |
| chr1 |
161697149 |
rs16858529 |
G |
T |
. |
PASS |
0.0703000 |
0.0274000 |
0.3889000 |
0.0278000 |
0.0215000 |
0.1104000 |
35.32 |
70.0 |
109 |
1000.00 |
4.67 |
52.29 |
0 |
52.29 |
0/1 |
| chr1 |
161721403 |
rs200382520 |
T |
TG |
. |
PASS |
0.0053000 |
0.0159000 |
0.0010000 |
0.0497000 |
0.0256000 |
0.0187700 |
35.5 |
70.0 |
18 |
219.91 |
22.22 |
33.33 |
0 |
44.44 |
0/1 |
| chr1 |
161722272 |
rs10917852 |
C |
A |
. |
PASS |
0.0514000 |
0.2637000 |
0.0486000 |
0.4553000 |
0.3231000 |
0.2145000 |
35.91 |
70.0 |
15 |
365.70 |
15.76 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
161722779 |
rs35439833,rs369176399 |
C |
CAAA |
. |
PASS |
0.6899000 |
0.4798000 |
0.5635000 |
0.6372000 |
0.5327000 |
0.5940000 |
37.0 |
70.0 |
12 |
450.17 |
6.67 |
41.67 |
0 |
100.00 |
0/1 |
| chr1 |
161722779 |
. |
C |
CAA |
. |
PASS |
0.6899000 |
0.4798000 |
0.5635000 |
0.6372000 |
0.5327000 |
0.5940000 |
37.0 |
70.0 |
12 |
450.17 |
4.76 |
58.33 |
0 |
100.00 |
0/1 |
| chr1 |
161722805 |
rs17415408 |
T |
G |
. |
PASS |
0.0008000 |
0.0159000 |
0.0000000 |
0.0497000 |
0.0235000 |
0.0169730 |
35.0 |
70.0 |
15 |
156.84 |
6.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
161751741 |
rs1058405 |
A |
G |
. |
PASS |
0.0113000 |
0.1700000 |
0.2629000 |
0.2724000 |
0.1677000 |
0.1669000 |
37.0 |
70.0 |
67 |
1000.00 |
0.28 |
62.69 |
0 |
62.69 |
0/1 |
| chr1 |
161751865 |
rs72706043 |
G |
A |
. |
PASS |
0.0000000 |
0.0086000 |
0.0000000 |
0.0129000 |
0.0000000 |
0.0037939 |
37.0 |
70.0 |
24 |
521.85 |
21.67 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
161823011 |
rs2257107 |
T |
A |
. |
PASS |
0.0696000 |
0.4395000 |
0.3056000 |
0.7038000 |
0.6084000 |
0.4010000 |
37.0 |
70.0 |
14 |
545.15 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161823197 |
rs3215134 |
G |
GT |
. |
PASS |
0.2678000 |
0.8098000 |
0.6329000 |
0.7853000 |
0.7137000 |
0.6074000 |
36.56 |
70.0 |
23 |
897.63 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161882189 |
rs72708088 |
G |
A |
. |
PASS |
0.0030000 |
0.0202000 |
0.0000000 |
0.0328000 |
0.0010000 |
0.0103830 |
37.0 |
70.0 |
32 |
247.14 |
17.36 |
28.12 |
0 |
28.12 |
0/1 |
| chr1 |
161928327 |
rs9482 |
A |
G |
. |
PASS |
0.4183000 |
0.4928000 |
0.5060000 |
0.7763000 |
0.6258000 |
0.5587000 |
36.62 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
161963607 |
rs4657130 |
G |
A |
. |
PASS |
0.3109000 |
0.6081000 |
0.5000000 |
0.6461000 |
0.5112000 |
0.4966000 |
36.75 |
70.0 |
185 |
1000.00 |
1.97 |
52.43 |
0 |
52.43 |
0/1 |
| chr1 |
161963790 |
rs4657131 |
A |
G |
. |
PASS |
0.5295000 |
0.6830000 |
0.6627000 |
0.6680000 |
0.5675000 |
0.6128000 |
37.0 |
70.0 |
18 |
372.82 |
0.00 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
161967681 |
rs2499836 |
A |
G |
. |
PASS |
0.5756000 |
0.6816000 |
0.6587000 |
0.6710000 |
0.6115000 |
0.6332000 |
36.74 |
70.0 |
89 |
1000.00 |
3.49 |
52.81 |
0 |
52.81 |
0/1 |
| chr1 |
161976234 |
rs12022536 |
A |
G |
. |
PASS |
0.4418000 |
0.7925000 |
0.4583000 |
0.8201000 |
0.5491000 |
0.5907000 |
36.57 |
69.64 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162269022 |
rs2341744 |
G |
A |
. |
PASS |
0.4160000 |
0.4553000 |
0.4058000 |
0.5278000 |
0.4703000 |
0.4525000 |
37.0 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162313597 |
rs347278 |
T |
C |
. |
PASS |
0.7610000 |
0.9683000 |
1.0000000 |
0.9781000 |
0.9888000 |
0.9259000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162313735 |
rs3751284 |
C |
T |
. |
PASS |
0.2829000 |
0.4510000 |
0.6339000 |
0.3549000 |
0.4857000 |
0.4309000 |
36.74 |
70.0 |
89 |
1000.00 |
10.81 |
52.81 |
0 |
52.81 |
0/1 |
| chr1 |
162335256 |
rs348624 |
C |
T |
. |
PASS |
0.4342000 |
0.2161000 |
0.1230000 |
0.1193000 |
0.2945000 |
0.2508000 |
36.52 |
70.0 |
104 |
1000.00 |
1.77 |
48.08 |
0 |
48.08 |
0/1 |
| chr1 |
162335424 |
rs1964052 |
T |
C |
. |
PASS |
0.4834000 |
0.7795000 |
0.8730000 |
0.8797000 |
0.6718000 |
0.7192000 |
35.5 |
70.0 |
30 |
521.54 |
2.50 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
162343774 |
rs7512126 |
A |
G |
. |
PASS |
0.1861000 |
0.4337000 |
0.5099000 |
0.4115000 |
0.2996000 |
0.3530000 |
37.0 |
70.0 |
15 |
214.77 |
1.90 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
162344102 |
rs2282397 |
C |
T |
. |
PASS |
0.1634000 |
0.4222000 |
0.5089000 |
0.3817000 |
0.3057000 |
0.3405000 |
36.68 |
70.0 |
78 |
1000.00 |
13.23 |
48.72 |
0 |
48.72 |
0/1 |
| chr1 |
162344390 |
rs164159 |
A |
G |
. |
PASS |
0.9871000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9962000 |
36.91 |
70.0 |
132 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162345091 |
rs164181 |
G |
A |
. |
PASS |
0.7874000 |
0.9755000 |
1.0000000 |
0.9980000 |
0.9918000 |
0.9385000 |
37.0 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162346433 |
rs150155141 |
CA |
C |
. |
PASS |
0.0287000 |
0.4020000 |
0.5040000 |
0.3569000 |
0.2515000 |
0.2855000 |
36.28 |
70.0 |
32 |
600.50 |
20.14 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
162348662 |
rs164188 |
C |
T |
. |
PASS |
0.9841000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9958000 |
36.69 |
69.49 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162352111 |
rs164189 |
G |
A |
. |
PASS |
0.3994000 |
0.4035000 |
0.2619000 |
0.5070000 |
0.3671000 |
0.3876000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162367071 |
rs17852003 |
C |
T |
. |
PASS |
0.4418000 |
0.2925000 |
0.2063000 |
0.3171000 |
0.2301000 |
0.3073000 |
36.76 |
70.0 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162411199 |
rs164593 |
T |
G |
. |
PASS |
0.5469000 |
0.3184000 |
0.1865000 |
0.3231000 |
0.3875000 |
0.3666000 |
37.0 |
70.0 |
10 |
183.90 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
162415426 |
rs66587648 |
C |
T |
. |
PASS |
0.1641000 |
0.2464000 |
0.1905000 |
0.2495000 |
0.2127000 |
0.2075000 |
37.0 |
70.0 |
16 |
253.54 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
162467014 |
rs10919549 |
C |
G |
. |
PASS |
0.3896000 |
0.4337000 |
0.4683000 |
0.4513000 |
0.4172000 |
0.4293000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162470961 |
rs5778280 |
A |
AT |
. |
PASS |
0.4160000 |
0.4251000 |
0.4593000 |
0.4294000 |
0.4294000 |
0.4313000 |
36.54 |
70.0 |
15 |
563.47 |
2.86 |
93.33 |
0 |
100.00 |
1/1 |
| chr1 |
162592702 |
rs16864157 |
C |
T |
. |
PASS |
0.3707000 |
0.3775000 |
0.5208000 |
0.4712000 |
0.6810000 |
0.4826000 |
36.67 |
70.0 |
66 |
1000.00 |
10.10 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
162722846 |
rs1632311 |
C |
G |
. |
PASS |
0.8918000 |
0.9942000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9704000 |
35.93 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162725655 |
rs1115570 |
A |
C |
. |
PASS |
0.7814000 |
0.9784000 |
0.9603000 |
0.9970000 |
0.9857000 |
0.9279000 |
36.52 |
70.0 |
25 |
992.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162740327 |
rs1780003 |
T |
C |
. |
PASS |
0.8033000 |
0.9827000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9455000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162743418 |
rs1355287 |
G |
T |
. |
PASS |
0.9720000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9924000 |
36.26 |
70.0 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162748588 |
rs907074 |
C |
A |
. |
PASS |
0.8873000 |
0.9914000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9689000 |
36.33 |
70.0 |
18 |
700.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162760551 |
rs1704754 |
C |
T |
. |
PASS |
0.1944000 |
0.5620000 |
0.5764000 |
0.7813000 |
0.6616000 |
0.5314000 |
36.41 |
65.71 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162760554 |
rs71519246 |
T |
C |
. |
PASS |
0.8048000 |
0.9827000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9459000 |
36.45 |
65.89 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162766476 |
rs1780019 |
C |
T |
. |
PASS |
0.2118000 |
0.5692000 |
0.5645000 |
0.7813000 |
0.6595000 |
0.5341000 |
36.36 |
69.93 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162774236 |
rs77482353 |
A |
G |
. |
PASS |
0.1498000 |
0.2637000 |
0.2282000 |
0.3479000 |
0.0920000 |
0.2099000 |
35.29 |
69.71 |
17 |
477.13 |
5.04 |
82.35 |
0 |
82.35 |
0/1 |
| chr1 |
162775267 |
rs12563263 |
C |
T |
. |
PASS |
0.1467000 |
0.2536000 |
0.1369000 |
0.3211000 |
0.0869000 |
0.1829000 |
36.45 |
66.45 |
73 |
1000.00 |
2.30 |
60.27 |
0 |
60.27 |
0/1 |
| chr1 |
162896416 |
rs72713395 |
G |
T |
. |
PASS |
0.0008000 |
0.0058000 |
0.0000000 |
0.0159000 |
0.0000000 |
0.0041933 |
34.6 |
70.0 |
11 |
127.11 |
25.45 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
162896420 |
rs6427698 |
G |
C |
. |
PASS |
0.6392000 |
0.4827000 |
0.6716000 |
0.5318000 |
0.4969000 |
0.5747000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162896495 |
rs6427699 |
G |
A |
. |
PASS |
0.5356000 |
0.4265000 |
0.4821000 |
0.4841000 |
0.4029000 |
0.4734000 |
36.37 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
162896561 |
rs6413905 |
C |
G |
. |
PASS |
0.2829000 |
0.0735000 |
0.0030000 |
0.1074000 |
0.0695000 |
0.1206000 |
36.33 |
70.0 |
50 |
552.75 |
7.11 |
36.00 |
0 |
36.00 |
0/1 |
| chr1 |
163117351 |
rs3768560 |
G |
T |
. |
PASS |
0.1664000 |
0.5216000 |
0.4563000 |
0.4195000 |
0.4274000 |
0.3758000 |
37.0 |
70.0 |
11 |
55.58 |
6.06 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
163122528 |
rs1354939 |
G |
C |
. |
PASS |
0.2224000 |
0.7205000 |
0.6230000 |
0.6431000 |
0.7393000 |
0.5575000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
163289571 |
rs2136241 |
C |
T |
. |
PASS |
0.5091000 |
0.5202000 |
0.5278000 |
0.5408000 |
0.5297000 |
0.5248000 |
36.78 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
163309302 |
rs2999852 |
C |
T |
. |
PASS |
0.6952000 |
0.9236000 |
0.9722000 |
0.9602000 |
0.9734000 |
0.8902000 |
37.0 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
163503069 |
rs2791170 |
A |
G |
. |
PASS |
0.8790000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9663000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
163503129 |
rs17364032 |
G |
A |
. |
PASS |
0.0461000 |
0.3329000 |
0.2649000 |
0.2972000 |
0.2035000 |
0.2111000 |
37.0 |
70.0 |
55 |
1000.00 |
12.73 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
163910256 |
rs10799969 |
T |
A |
. |
PASS |
0.5582000 |
0.4366000 |
0.3671000 |
0.3837000 |
0.5092000 |
0.4583000 |
36.82 |
69.69 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
163910297 |
rs10799970 |
A |
G |
. |
PASS |
0.5582000 |
0.4380000 |
0.3671000 |
0.3837000 |
0.5092000 |
0.4585000 |
36.62 |
69.69 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
164326453 |
rs10917988 |
G |
C |
. |
PASS |
0.1059000 |
0.2565000 |
0.4286000 |
0.2753000 |
0.2955000 |
0.2628000 |
36.57 |
70.0 |
69 |
913.26 |
8.59 |
40.58 |
0 |
40.58 |
0/1 |
| chr1 |
164326589 |
rs34663453 |
T |
G |
. |
PASS |
0.1891000 |
0.1354000 |
0.0208000 |
0.2386000 |
0.1892000 |
0.1577000 |
34.88 |
70.0 |
35 |
532.10 |
3.70 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
164789444 |
rs1538488 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.59 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
164904573 |
rs10753651 |
T |
A |
. |
PASS |
0.5454000 |
0.4006000 |
0.3274000 |
0.4274000 |
0.4397000 |
0.4371000 |
37.0 |
70.0 |
50 |
648.30 |
2.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
164904581 |
rs56235501 |
A |
C |
. |
PASS |
0.0000000 |
0.0216000 |
0.0000000 |
0.0328000 |
0.0020000 |
0.0099840 |
37.0 |
70.0 |
54 |
761.56 |
3.06 |
42.59 |
0 |
42.59 |
0/1 |
| chr1 |
165173216 |
rs1354509 |
A |
G |
. |
PASS |
0.9955000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9988000 |
36.87 |
69.79 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
165218679 |
rs9970062 |
C |
T |
. |
PASS |
0.2867000 |
0.2032000 |
0.0823000 |
0.3181000 |
0.1667000 |
0.2169000 |
35.82 |
69.61 |
118 |
1000.00 |
4.29 |
43.22 |
0 |
43.22 |
0/1 |
| chr1 |
165221696 |
rs1553607 |
C |
A |
. |
PASS |
0.5424000 |
0.6326000 |
0.6855000 |
0.5219000 |
0.6125000 |
0.5933000 |
35.8 |
70.0 |
41 |
1000.00 |
0.65 |
73.17 |
0 |
73.17 |
0/1 |
| chr1 |
165370400 |
rs56362364 |
G |
C |
. |
PASS |
0.0847000 |
0.1282000 |
0.0010000 |
0.1839000 |
0.0358000 |
0.0843000 |
33.57 |
70.0 |
17 |
180.59 |
1.68 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
165370475 |
rs10918169 |
G |
C |
. |
PASS |
0.3003000 |
0.1441000 |
0.0010000 |
0.1829000 |
0.0358000 |
0.1432000 |
35.38 |
70.0 |
80 |
1000.00 |
4.39 |
46.25 |
0 |
46.25 |
0/1 |
| chr1 |
165370757 |
rs283690 |
G |
A |
. |
PASS |
0.8540000 |
0.6124000 |
0.7133000 |
0.4761000 |
0.7679000 |
0.6995000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
165376043 |
rs283696 |
T |
C |
. |
PASS |
0.8805000 |
0.8300000 |
0.9276000 |
0.7962000 |
0.9110000 |
0.8720000 |
36.0 |
70.0 |
28 |
372.49 |
14.29 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
165377389 |
rs283692 |
T |
C |
. |
PASS |
0.9864000 |
1.0000000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9962000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
165377552 |
rs2134095 |
G |
A |
. |
PASS |
0.2284000 |
0.6023000 |
0.5079000 |
0.6710000 |
0.5020000 |
0.4788000 |
36.81 |
70.0 |
96 |
1000.00 |
5.95 |
65.62 |
0 |
65.62 |
0/1 |
| chr1 |
165378729 |
. |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
70.0 |
19 |
742.59 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
165378729 |
. |
TACACAC |
TAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
18 |
67.86 |
11.11 |
33.33 |
1 |
100.00 |
0/1 |
| chr1 |
165378729 |
. |
TACACAC |
TACAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
18 |
67.86 |
22.22 |
44.44 |
1 |
100.00 |
0/1 |
| chr1 |
165378730 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
70.0 |
19 |
742.59 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
165378731 |
. |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
19 |
360.25 |
22.97 |
57.89 |
1 |
57.89 |
0/1 |
| chr1 |
165378732 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
19 |
360.25 |
22.97 |
57.89 |
1 |
57.89 |
0/1 |
| chr1 |
165378992 |
rs10918172 |
C |
T |
. |
PASS |
0.1399000 |
0.1225000 |
0.0000000 |
0.1769000 |
0.0327000 |
0.0958000 |
35.29 |
70.0 |
14 |
205.77 |
14.29 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
165389285 |
rs157870 |
C |
G |
. |
PASS |
0.5915000 |
0.4121000 |
0.1835000 |
0.3887000 |
0.1656000 |
0.3606000 |
36.54 |
70.0 |
26 |
992.61 |
3.08 |
96.15 |
0 |
100.00 |
1/1 |
| chr1 |
165398115 |
rs113471 |
T |
C |
. |
PASS |
0.4160000 |
0.2896000 |
0.2460000 |
0.1531000 |
0.1012000 |
0.2500000 |
36.53 |
70.0 |
107 |
1000.00 |
2.71 |
47.66 |
0 |
47.66 |
0/1 |
| chr1 |
165621322 |
rs9333479,rs77176546 |
TATTATC |
T |
. |
PASS |
0.2315000 |
0.2190000 |
0.1865000 |
0.2356000 |
0.3497000 |
0.2446000 |
33.83 |
70.0 |
48 |
508.33 |
13.89 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
165634425 |
rs3820362 |
C |
G |
. |
PASS |
0.3911000 |
0.2939000 |
0.1488000 |
0.4930000 |
0.3384000 |
0.3391000 |
37.0 |
70.0 |
34 |
571.14 |
5.88 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
165636749 |
rs2176151 |
A |
G |
. |
PASS |
0.3971000 |
0.3386000 |
0.1567000 |
0.4960000 |
0.4202000 |
0.3650000 |
37.0 |
70.0 |
21 |
322.02 |
1.90 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
165648559 |
rs4646897 |
T |
G |
. |
PASS |
0.3654000 |
0.3343000 |
0.1538000 |
0.4990000 |
0.4100000 |
0.3540000 |
37.0 |
70.0 |
15 |
168.85 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
165648709 |
rs1143661 |
C |
T |
. |
PASS |
0.1702000 |
0.0447000 |
0.0179000 |
0.0616000 |
0.0624000 |
0.0793000 |
35.84 |
69.35 |
74 |
1000.00 |
6.54 |
41.89 |
0 |
41.89 |
0/1 |
| chr1 |
165648886 |
rs4646896 |
G |
A |
. |
PASS |
0.3654000 |
0.3343000 |
0.1538000 |
0.4980000 |
0.4131000 |
0.3544000 |
37.0 |
70.0 |
19 |
328.04 |
15.79 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
165648894 |
rs4646895 |
C |
G |
. |
PASS |
0.3654000 |
0.3343000 |
0.1538000 |
0.4990000 |
0.4131000 |
0.3546000 |
34.6 |
70.0 |
15 |
311.92 |
6.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
165651502 |
rs1913844 |
G |
C |
. |
PASS |
0.6074000 |
0.7723000 |
0.9881000 |
0.6362000 |
0.7781000 |
0.7460000 |
37.0 |
70.0 |
67 |
1000.00 |
6.07 |
44.78 |
0 |
44.78 |
0/1 |
| chr1 |
165652273 |
rs1143659 |
A |
G |
. |
PASS |
0.6074000 |
0.7723000 |
0.9881000 |
0.6372000 |
0.7781000 |
0.7462000 |
37.0 |
70.0 |
125 |
1000.00 |
7.25 |
49.60 |
0 |
49.60 |
0/1 |
| chr1 |
165737704 |
rs2790053 |
C |
G |
. |
PASS |
0.9168000 |
0.8703000 |
0.9911000 |
0.8598000 |
0.9560000 |
0.9215000 |
35.38 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
165859630 |
rs477033 |
C |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.66 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
165859640 |
rs138035087,rs71583457 |
G |
GTGT |
. |
PASS |
0.0068000 |
0.0893000 |
0.0010000 |
0.1779000 |
0.0470000 |
0.0593000 |
36.57 |
70.0 |
61 |
966.43 |
2.08 |
49.18 |
0 |
49.18 |
0/1 |
| chr1 |
165967420 |
rs732285 |
G |
A |
. |
PASS |
0.4599000 |
0.5548000 |
0.4306000 |
0.5795000 |
0.5041000 |
0.4998000 |
36.83 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166029825 |
rs72703906 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
55 |
1000.00 |
9.28 |
52.73 |
0 |
52.73 |
0/1 |
| chr1 |
166037909 |
rs3856211 |
C |
T |
. |
PASS |
0.5930000 |
0.4424000 |
0.5675000 |
0.5855000 |
0.6288000 |
0.5725000 |
36.08 |
70.0 |
64 |
836.91 |
1.44 |
40.62 |
0 |
40.62 |
0/1 |
| chr1 |
166039898 |
rs41269662 |
C |
G |
. |
PASS |
0.2110000 |
0.3156000 |
0.2560000 |
0.1501000 |
0.2178000 |
0.2236000 |
36.33 |
70.0 |
70 |
1000.00 |
2.54 |
51.43 |
0 |
51.43 |
0/1 |
| chr1 |
166244927 |
rs1901357 |
T |
C |
. |
PASS |
0.3048000 |
0.3098000 |
0.4306000 |
0.2316000 |
0.3650000 |
0.3279000 |
36.0 |
69.96 |
35 |
840.65 |
16.43 |
68.57 |
0 |
68.57 |
0/1 |
| chr1 |
166244970 |
rs3841379 |
C |
CA |
. |
PASS |
0.3048000 |
0.3098000 |
0.4306000 |
0.2316000 |
0.3661000 |
0.3281000 |
36.52 |
69.96 |
34 |
840.08 |
4.90 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
166245037 |
rs1823620 |
A |
G |
. |
PASS |
0.5666000 |
0.9179000 |
0.9504000 |
0.9980000 |
0.9969000 |
0.8632000 |
36.53 |
69.16 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166245170 |
rs3813991 |
G |
C |
. |
PASS |
0.2171000 |
0.1484000 |
0.3313000 |
0.2217000 |
0.3446000 |
0.2564000 |
36.69 |
70.0 |
65 |
1000.00 |
3.08 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
166245453 |
rs2599511 |
T |
C |
. |
PASS |
0.2617000 |
0.6081000 |
0.5198000 |
0.7664000 |
0.6309000 |
0.5351000 |
37.0 |
70.0 |
34 |
742.37 |
4.76 |
61.76 |
0 |
61.76 |
0/1 |
| chr1 |
166246419 |
rs2488896 |
A |
G |
. |
PASS |
0.5756000 |
0.9179000 |
0.9504000 |
0.9980000 |
0.9969000 |
0.8656000 |
36.88 |
69.62 |
104 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166550501 |
rs1372685 |
C |
T |
. |
PASS |
0.6021000 |
0.4582000 |
0.5853000 |
0.6223000 |
0.3937000 |
0.5421000 |
36.16 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166717206 |
rs1815531 |
T |
C |
. |
PASS |
0.9675000 |
0.8876000 |
0.9990000 |
0.7932000 |
0.9632000 |
0.9269000 |
37.0 |
69.83 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166717477 |
rs60029139 |
CT |
C |
. |
PASS |
0.9675000 |
0.8876000 |
0.9990000 |
0.7922000 |
0.9632000 |
0.9267000 |
34.68 |
69.59 |
22 |
822.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166717685 |
rs533295 |
A |
G |
. |
PASS |
0.9750000 |
0.8876000 |
0.9990000 |
0.7922000 |
0.9632000 |
0.9287000 |
35.8 |
68.65 |
20 |
775.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166717712 |
rs549009 |
G |
A |
. |
PASS |
0.5265000 |
0.2435000 |
0.2718000 |
0.2883000 |
0.2382000 |
0.3319000 |
37.0 |
69.12 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166765794 |
rs858796 |
T |
C |
. |
PASS |
0.8154000 |
0.8026000 |
0.7470000 |
0.7247000 |
0.6810000 |
0.7554000 |
37.0 |
70.0 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166826773 |
rs6675153 |
C |
T |
. |
PASS |
0.6725000 |
0.3602000 |
0.2996000 |
0.4483000 |
0.3303000 |
0.4423000 |
36.14 |
69.71 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166827224 |
rs6675750 |
G |
A |
. |
PASS |
0.3654000 |
0.3141000 |
0.3006000 |
0.4175000 |
0.3292000 |
0.3486000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166829320 |
rs3215444 |
C |
CT |
. |
PASS |
0.3918000 |
0.3127000 |
0.2986000 |
0.4155000 |
0.3333000 |
0.3554000 |
36.08 |
70.0 |
12 |
438.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166831404 |
rs2075947 |
A |
C |
. |
PASS |
0.3926000 |
0.3055000 |
0.2996000 |
0.4165000 |
0.3272000 |
0.3538000 |
37.0 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166833199 |
rs2272793 |
C |
A |
. |
PASS |
0.3903000 |
0.3055000 |
0.2996000 |
0.4165000 |
0.3272000 |
0.3532000 |
34.6 |
70.0 |
10 |
354.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166899807 |
rs2013526 |
T |
C |
. |
PASS |
0.5325000 |
0.3862000 |
0.6944000 |
0.4602000 |
0.5143000 |
0.5268000 |
36.59 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
166961857 |
rs7511933 |
G |
A |
. |
PASS |
0.3669000 |
0.2421000 |
0.2460000 |
0.3091000 |
0.2577000 |
0.2923000 |
37.0 |
70.0 |
11 |
268.58 |
11.36 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
166963234 |
rs3736988 |
T |
C |
. |
PASS |
0.6399000 |
0.2853000 |
0.2470000 |
0.3588000 |
0.2607000 |
0.3812000 |
37.0 |
70.0 |
10 |
62.74 |
13.33 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
167059462 |
rs2281963 |
G |
C |
. |
PASS |
0.5605000 |
0.3429000 |
0.1736000 |
0.5348000 |
0.2342000 |
0.3836000 |
37.0 |
70.0 |
58 |
749.52 |
4.35 |
39.66 |
0 |
39.66 |
0/1 |
| chr1 |
167059575 |
rs28384507 |
G |
T |
. |
PASS |
0.4629000 |
0.3012000 |
0.1736000 |
0.4523000 |
0.2331000 |
0.3353000 |
37.0 |
70.0 |
23 |
562.48 |
11.96 |
69.57 |
0 |
69.57 |
0/1 |
| chr1 |
167082869 |
rs12122365 |
G |
A |
. |
PASS |
0.7958000 |
0.4986000 |
0.8929000 |
0.5596000 |
0.4867000 |
0.6663000 |
37.0 |
70.0 |
10 |
188.05 |
13.33 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
167088473 |
rs1410244 |
C |
A |
. |
PASS |
0.3903000 |
0.2536000 |
0.7351000 |
0.2445000 |
0.3569000 |
0.4050000 |
37.0 |
70.0 |
49 |
490.23 |
2.04 |
32.65 |
0 |
36.73 |
0/1 |
| chr1 |
167095163 |
rs267745 |
G |
C |
. |
PASS |
0.8880000 |
0.4597000 |
0.8720000 |
0.4751000 |
0.3732000 |
0.6420000 |
36.5 |
70.0 |
99 |
1000.00 |
7.58 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
167095765 |
rs6668826 |
G |
A |
. |
PASS |
0.2716000 |
0.2003000 |
0.7421000 |
0.1680000 |
0.2382000 |
0.3291000 |
35.97 |
70.0 |
78 |
1000.00 |
2.27 |
44.87 |
0 |
44.87 |
0/1 |
| chr1 |
167095881 |
rs3795605 |
G |
A |
. |
PASS |
0.2716000 |
0.2003000 |
0.7431000 |
0.1680000 |
0.2382000 |
0.3293000 |
37.0 |
70.0 |
40 |
724.31 |
9.76 |
52.50 |
0 |
52.50 |
0/1 |
| chr1 |
167097739 |
rs2281959 |
C |
A |
. |
PASS |
0.2776000 |
0.2867000 |
0.7431000 |
0.3141000 |
0.2894000 |
0.3822000 |
35.4 |
70.0 |
46 |
427.47 |
15.65 |
32.61 |
0 |
32.61 |
0/1 |
| chr1 |
167121665 |
rs4656525 |
G |
A |
. |
PASS |
0.0098000 |
0.0937000 |
0.0020000 |
0.1292000 |
0.1411000 |
0.0695000 |
37.0 |
70.0 |
12 |
223.81 |
0.00 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
167121814 |
rs10753750 |
C |
T |
. |
PASS |
0.3487000 |
0.5447000 |
0.6617000 |
0.4483000 |
0.6483000 |
0.5174000 |
37.0 |
70.0 |
118 |
1000.00 |
12.40 |
34.75 |
0 |
34.75 |
0/1 |
| chr1 |
167121851 |
rs4657637 |
G |
C |
. |
PASS |
0.8941000 |
0.8545000 |
0.7361000 |
0.8946000 |
0.8926000 |
0.8566000 |
36.79 |
70.0 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167121961 |
rs4657638 |
C |
T |
. |
PASS |
0.0976000 |
0.0951000 |
0.0020000 |
0.1292000 |
0.1411000 |
0.0929000 |
36.29 |
70.0 |
22 |
599.40 |
0.00 |
77.27 |
0 |
77.27 |
0/1 |
| chr1 |
167353258 |
rs35617253 |
AT |
A |
. |
PASS |
0.6952000 |
0.8084000 |
0.8899000 |
0.7227000 |
0.7536000 |
0.7670000 |
35.7 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167367193 |
rs7524019 |
C |
T |
. |
PASS |
0.0522000 |
0.6138000 |
0.6994000 |
0.4861000 |
0.6278000 |
0.4599000 |
35.57 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167381640 |
rs35736613 |
A |
AG |
. |
PASS |
0.2769000 |
0.7651000 |
0.8859000 |
0.6978000 |
0.7280000 |
0.6398000 |
36.2 |
70.0 |
15 |
575.48 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167382374 |
rs10753757 |
A |
C |
. |
PASS |
0.7042000 |
0.8084000 |
0.8899000 |
0.7247000 |
0.7546000 |
0.7700000 |
35.33 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167382399 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.62 |
70.0 |
33 |
1000.00 |
3.60 |
96.97 |
1 |
96.97 |
1/1 |
| chr1 |
167382399 |
rs67647055,rs72176559,rs112044990 |
AGTGT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.97 |
70.0 |
36 |
965.17 |
5.91 |
86.11 |
1 |
97.22 |
0/1 |
| chr1 |
167382400 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.62 |
70.0 |
33 |
1000.00 |
3.60 |
96.97 |
1 |
96.97 |
1/1 |
| chr1 |
167487586 |
rs35864197 |
C |
G |
. |
PASS |
0.0424000 |
0.1095000 |
0.0298000 |
0.1501000 |
0.2474000 |
0.1108000 |
35.15 |
70.0 |
31 |
389.07 |
4.47 |
41.94 |
0 |
41.94 |
0/1 |
| chr1 |
167488799 |
rs863454 |
C |
A |
. |
PASS |
0.0809000 |
0.5245000 |
0.0982000 |
0.4085000 |
0.4417000 |
0.2821000 |
36.08 |
70.0 |
27 |
413.11 |
11.40 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
167509623 |
. |
T |
TAGC |
. |
PASS |
0.0817000 |
0.3098000 |
0.6677000 |
0.2724000 |
0.3456000 |
0.3211000 |
36.79 |
70.0 |
20 |
784.34 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167515272 |
rs7513428 |
T |
C |
. |
PASS |
0.7345000 |
0.9006000 |
0.9802000 |
0.8509000 |
0.8671000 |
0.8562000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167517192 |
. |
C |
CGA |
. |
PASS |
0.0053000 |
0.0101000 |
0.0000000 |
0.0328000 |
0.0031000 |
0.0091853 |
36.45 |
70.0 |
20 |
351.21 |
7.27 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
167569730 |
rs7514302 |
G |
T |
. |
PASS |
0.5280000 |
0.6729000 |
0.5179000 |
0.6352000 |
0.3548000 |
0.5337000 |
36.08 |
70.0 |
68 |
820.71 |
11.31 |
38.24 |
0 |
38.24 |
0/1 |
| chr1 |
167599533 |
rs3738220 |
C |
T |
. |
PASS |
0.0598000 |
0.1412000 |
0.2431000 |
0.1193000 |
0.0838000 |
0.1246000 |
37.0 |
67.78 |
18 |
289.28 |
33.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
167663678 |
rs56152546 |
G |
T |
. |
PASS |
0.0091000 |
0.0663000 |
0.0288000 |
0.0726000 |
0.0726000 |
0.0461000 |
37.0 |
70.0 |
12 |
303.19 |
0.00 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
167666316 |
rs72697738 |
T |
C |
. |
PASS |
0.0091000 |
0.0663000 |
0.0248000 |
0.0736000 |
0.0654000 |
0.0441000 |
37.0 |
70.0 |
38 |
897.41 |
1.05 |
65.79 |
0 |
65.79 |
0/1 |
| chr1 |
167734793 |
rs763283 |
C |
T |
. |
PASS |
0.1225000 |
0.3718000 |
0.3710000 |
0.1640000 |
0.1595000 |
0.2226000 |
35.74 |
70.0 |
43 |
607.72 |
0.73 |
44.19 |
0 |
44.19 |
0/1 |
| chr1 |
167778843 |
rs3213588 |
G |
A |
. |
PASS |
0.8374000 |
0.3790000 |
0.1766000 |
0.4324000 |
0.3845000 |
0.4710000 |
37.0 |
70.0 |
17 |
375.83 |
0.00 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
167787265 |
rs12060498 |
C |
T |
. |
PASS |
0.2133000 |
0.1282000 |
0.0327000 |
0.1590000 |
0.0327000 |
0.1190000 |
37.0 |
70.0 |
25 |
435.29 |
27.69 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
167789196 |
rs72697795 |
G |
C |
. |
PASS |
0.0310000 |
0.2133000 |
0.3611000 |
0.1054000 |
0.1861000 |
0.1679000 |
35.4 |
69.87 |
30 |
475.63 |
13.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
167789475 |
rs4657721 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.38 |
69.79 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167792356 |
rs72697797 |
G |
A |
. |
PASS |
0.0008000 |
0.0144000 |
0.0000000 |
0.0378000 |
0.0072000 |
0.0111820 |
37.0 |
70.0 |
47 |
369.08 |
2.95 |
27.66 |
0 |
27.66 |
0/1 |
| chr1 |
167793670 |
rs1476074 |
C |
T |
. |
PASS |
0.3003000 |
0.4697000 |
0.4226000 |
0.4205000 |
0.2965000 |
0.3718000 |
36.29 |
70.0 |
27 |
584.35 |
7.84 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
167806647 |
rs1034463 |
T |
A |
. |
PASS |
0.9470000 |
0.7536000 |
0.4970000 |
0.6690000 |
0.6186000 |
0.7097000 |
37.0 |
70.0 |
10 |
100.36 |
40.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
167815030 |
rs12048517 |
A |
G |
. |
PASS |
0.0106000 |
0.0533000 |
0.2381000 |
0.0358000 |
0.1145000 |
0.0877000 |
36.25 |
70.0 |
96 |
1000.00 |
2.08 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
167815167 |
rs2269678 |
T |
C |
. |
PASS |
0.0825000 |
0.2853000 |
0.3800000 |
0.2843000 |
0.1871000 |
0.2314000 |
37.0 |
69.26 |
42 |
968.91 |
8.99 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
167817639 |
rs203795 |
A |
G |
. |
PASS |
0.9297000 |
0.8372000 |
0.8571000 |
0.7137000 |
0.7413000 |
0.8221000 |
35.6 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167823505 |
rs3738235 |
G |
A |
. |
PASS |
0.0106000 |
0.0533000 |
0.2292000 |
0.0368000 |
0.1145000 |
0.0861000 |
37.0 |
70.0 |
26 |
390.52 |
20.51 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
167823512 |
rs3738236 |
T |
C |
. |
PASS |
0.7602000 |
0.6282000 |
0.6746000 |
0.5229000 |
0.5542000 |
0.6368000 |
35.67 |
69.26 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167825485 |
rs2071921 |
T |
C |
. |
PASS |
0.4599000 |
0.5749000 |
0.7113000 |
0.4105000 |
0.3988000 |
0.5046000 |
36.79 |
69.66 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167825606 |
rs2071922 |
A |
G |
. |
PASS |
0.0756000 |
0.2752000 |
0.4177000 |
0.1272000 |
0.2076000 |
0.2083000 |
36.77 |
70.0 |
72 |
1000.00 |
1.07 |
72.22 |
0 |
72.22 |
0/1 |
| chr1 |
167825718 |
rs7537851 |
C |
T |
. |
PASS |
0.2012000 |
0.2637000 |
0.2361000 |
0.2734000 |
0.1616000 |
0.2236000 |
35.08 |
70.0 |
47 |
822.28 |
3.91 |
53.19 |
0 |
53.19 |
0/1 |
| chr1 |
167839578 |
rs67878347 |
G |
A |
. |
PASS |
0.0356000 |
0.2161000 |
0.1260000 |
0.2068000 |
0.0992000 |
0.1256000 |
36.61 |
70.0 |
69 |
1000.00 |
4.39 |
44.93 |
0 |
44.93 |
0/1 |
| chr1 |
167849318 |
rs203847 |
A |
G |
. |
PASS |
0.4660000 |
0.3184000 |
0.1270000 |
0.3231000 |
0.1431000 |
0.2855000 |
36.59 |
70.0 |
58 |
992.28 |
3.45 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
167849414 |
rs203849 |
A |
G |
. |
PASS |
0.6687000 |
0.4597000 |
0.3224000 |
0.5040000 |
0.4448000 |
0.4932000 |
36.58 |
69.76 |
164 |
1000.00 |
3.70 |
51.83 |
0 |
51.83 |
0/1 |
| chr1 |
167889094 |
rs17556487 |
T |
A |
. |
PASS |
0.0552000 |
0.3862000 |
0.1310000 |
0.2286000 |
0.1585000 |
0.1713000 |
37.0 |
70.0 |
11 |
55.58 |
0.00 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
167893759 |
rs9618 |
G |
A |
. |
PASS |
0.6823000 |
0.5202000 |
0.1806000 |
0.3519000 |
0.2423000 |
0.4065000 |
37.0 |
70.0 |
67 |
893.67 |
6.63 |
40.30 |
0 |
40.30 |
0/1 |
| chr1 |
167906239 |
rs203788 |
A |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.74 |
69.78 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
167973976 |
rs1060041 |
C |
T |
. |
PASS |
0.0401000 |
0.3876000 |
0.1339000 |
0.2266000 |
0.1595000 |
0.1679000 |
37.0 |
69.93 |
70 |
884.63 |
18.52 |
38.57 |
0 |
38.57 |
0/1 |
| chr1 |
167992344 |
rs201541 |
T |
A |
. |
PASS |
0.7549000 |
0.5432000 |
0.1895000 |
0.3608000 |
0.2474000 |
0.4335000 |
36.5 |
69.88 |
47 |
812.39 |
10.82 |
51.06 |
0 |
51.06 |
0/1 |
| chr1 |
168013850 |
rs11558511 |
T |
C |
. |
PASS |
0.0545000 |
0.1383000 |
0.2044000 |
0.2823000 |
0.2720000 |
0.1845000 |
35.59 |
70.0 |
42 |
527.19 |
3.36 |
40.48 |
0 |
40.48 |
0/1 |
| chr1 |
168025245 |
rs3977719 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
68.28 |
108 |
1000.00 |
0.94 |
60.19 |
0 |
60.19 |
0/1 |
| chr1 |
168025262 |
rs3977720 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.03 |
66.68 |
119 |
1000.00 |
1.50 |
62.18 |
0 |
62.18 |
0/1 |
| chr1 |
168025400 |
rs3977721 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.23 |
68.43 |
96 |
1000.00 |
6.47 |
48.96 |
0 |
48.96 |
0/1 |
| chr1 |
168025409 |
rs3977722 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.72 |
68.66 |
94 |
1000.00 |
8.51 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
168025538 |
rs3977723 |
T |
C |
. |
PASS |
0.7821000 |
0.6527000 |
0.5268000 |
0.5577000 |
0.5317000 |
0.6188000 |
36.74 |
66.89 |
80 |
1000.00 |
0.11 |
58.75 |
0 |
58.75 |
0/1 |
| chr1 |
168025577 |
rs7535741 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
64.1 |
61 |
201.63 |
4.59 |
16.39 |
0 |
16.39 |
0/1 |
| chr1 |
168025628 |
rs7535915 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
58.44 |
35 |
602.04 |
13.02 |
51.43 |
0 |
51.43 |
0/1 |
| chr1 |
168025664 |
rs7535844 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.3 |
23 |
311.85 |
49.57 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
168059866 |
rs275149 |
A |
G |
. |
PASS |
0.5257000 |
0.4063000 |
0.1518000 |
0.2634000 |
0.2147000 |
0.3205000 |
36.61 |
69.35 |
78 |
1000.00 |
5.96 |
39.74 |
0 |
39.74 |
0/1 |
| chr1 |
168074145 |
rs6427119 |
G |
A |
. |
PASS |
0.3321000 |
0.4827000 |
0.1488000 |
0.3390000 |
0.1759000 |
0.2869000 |
36.62 |
70.0 |
51 |
1000.00 |
2.82 |
62.75 |
0 |
62.75 |
0/1 |
| chr1 |
168180219 |
rs10737540 |
G |
T |
. |
PASS |
0.4887000 |
0.5029000 |
0.5298000 |
0.3897000 |
0.5685000 |
0.4946000 |
35.91 |
70.0 |
22 |
344.63 |
27.27 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
168200733 |
rs11588504 |
T |
C |
. |
PASS |
0.2821000 |
0.4971000 |
0.4375000 |
0.6471000 |
0.3783000 |
0.4353000 |
37.0 |
70.0 |
26 |
348.75 |
22.38 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
168208308 |
rs12142742 |
T |
C |
. |
PASS |
0.5741000 |
0.5533000 |
0.4405000 |
0.6690000 |
0.4243000 |
0.5341000 |
37.0 |
70.0 |
27 |
387.50 |
7.41 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
168230331 |
rs71974117,rs66939843 |
ACTGGATAGCTGAACCATCATC |
A |
. |
PASS |
0.4213000 |
0.4380000 |
0.3492000 |
0.5010000 |
0.3436000 |
0.4099000 |
35.89 |
70.0 |
67 |
858.73 |
5.65 |
41.79 |
0 |
41.79 |
0/1 |
| chr1 |
168262289 |
rs7543224 |
A |
G |
. |
PASS |
0.6619000 |
0.4366000 |
0.5000000 |
0.6561000 |
0.5787000 |
0.5807000 |
37.0 |
70.0 |
12 |
140.26 |
16.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
168262299 |
rs7520743 |
C |
T |
. |
PASS |
0.2020000 |
0.3501000 |
0.4058000 |
0.5954000 |
0.3415000 |
0.3698000 |
35.0 |
70.0 |
15 |
161.00 |
26.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
168262338 |
rs56064910 |
C |
T |
. |
PASS |
0.0000000 |
0.0086000 |
0.0010000 |
0.0109000 |
0.0000000 |
0.0035942 |
36.14 |
70.0 |
33 |
440.97 |
3.46 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
168262527 |
rs12096093 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.26 |
70.0 |
114 |
1000.00 |
10.78 |
30.70 |
0 |
33.33 |
0/1 |
| chr1 |
168262624 |
rs10800350 |
A |
G |
. |
PASS |
0.9274000 |
0.9179000 |
0.9087000 |
0.9254000 |
0.8538000 |
0.9075000 |
32.2 |
70.0 |
12 |
116.24 |
0.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
168338716 |
rs72701783 |
A |
G |
. |
PASS |
0.1619000 |
0.0231000 |
0.0000000 |
0.0268000 |
0.0235000 |
0.0559000 |
37.0 |
68.57 |
44 |
419.87 |
4.55 |
31.82 |
0 |
31.82 |
0/1 |
| chr1 |
168510122 |
rs470733 |
T |
A |
. |
PASS |
0.4818000 |
0.6499000 |
0.8671000 |
0.5398000 |
0.6524000 |
0.6276000 |
35.77 |
55.0 |
66 |
1000.00 |
2.10 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
168511155 |
rs76400946 |
T |
C |
. |
PASS |
0.6059000 |
0.6527000 |
0.8661000 |
0.5427000 |
0.6554000 |
0.6617000 |
37.0 |
69.0 |
20 |
325.03 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
168513067 |
rs61801330 |
C |
A |
. |
PASS |
0.3986000 |
0.1599000 |
0.0298000 |
0.1958000 |
0.1738000 |
0.2067000 |
37.0 |
59.6 |
28 |
296.81 |
30.00 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
168513109 |
rs3820404 |
A |
G |
. |
PASS |
0.3442000 |
0.1772000 |
0.0327000 |
0.2028000 |
0.1748000 |
0.1969000 |
37.0 |
55.93 |
50 |
443.60 |
2.67 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
168513228 |
rs3820407 |
G |
A |
. |
PASS |
0.1581000 |
0.0994000 |
0.0079000 |
0.1332000 |
0.0828000 |
0.1000000 |
37.0 |
57.8 |
29 |
89.09 |
17.93 |
17.24 |
0 |
17.24 |
0/1 |
| chr1 |
168545821 |
rs61079363 |
G |
A |
. |
PASS |
0.4387000 |
0.1513000 |
0.0317000 |
0.1869000 |
0.1677000 |
0.2135000 |
37.0 |
63.72 |
51 |
1000.00 |
6.50 |
62.75 |
0 |
62.75 |
0/1 |
| chr1 |
168545864 |
rs116453184 |
A |
G |
. |
PASS |
0.2216000 |
0.1239000 |
0.0079000 |
0.1640000 |
0.0992000 |
0.1296000 |
37.0 |
51.83 |
102 |
663.01 |
6.86 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
168545949 |
rs34933908 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.49 |
65.16 |
110 |
1000.00 |
3.90 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
168549422 |
rs6427130 |
C |
T |
. |
PASS |
0.5393000 |
0.3847000 |
0.1935000 |
0.5706000 |
0.3845000 |
0.4243000 |
36.33 |
69.14 |
75 |
1000.00 |
3.78 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
168550535 |
rs79981832 |
A |
G |
. |
PASS |
0.0454000 |
0.1816000 |
0.0169000 |
0.3072000 |
0.1820000 |
0.1378000 |
36.43 |
68.33 |
42 |
706.28 |
9.52 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
168575163 |
rs10800363 |
C |
T |
. |
PASS |
0.4826000 |
0.5980000 |
0.4623000 |
0.6004000 |
0.5542000 |
0.5321000 |
36.02 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
168665747 |
rs78760104 |
C |
CT |
. |
PASS |
0.8313000 |
0.5821000 |
0.5804000 |
0.5417000 |
0.6186000 |
0.6466000 |
37.0 |
70.0 |
58 |
1000.00 |
7.12 |
53.45 |
0 |
53.45 |
0/1 |
| chr1 |
168665974 |
rs524705 |
T |
C |
. |
PASS |
0.8313000 |
0.5821000 |
0.5804000 |
0.5417000 |
0.6186000 |
0.6466000 |
37.0 |
70.0 |
16 |
128.22 |
2.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
168683476 |
rs35449613 |
C |
T |
. |
PASS |
0.0023000 |
0.0245000 |
0.0010000 |
0.0596000 |
0.0695000 |
0.0298000 |
37.0 |
69.55 |
86 |
1000.00 |
2.43 |
51.16 |
0 |
51.16 |
0/1 |
| chr1 |
168698173 |
rs1052591 |
C |
T |
. |
PASS |
0.2519000 |
0.3141000 |
0.1637000 |
0.5129000 |
0.3661000 |
0.3175000 |
37.0 |
70.0 |
81 |
1000.00 |
1.08 |
39.51 |
0 |
39.51 |
0/1 |
| chr1 |
168907899 |
rs3795611 |
G |
A |
. |
PASS |
0.0711000 |
0.1383000 |
0.0377000 |
0.1034000 |
0.0900000 |
0.0839000 |
35.5 |
70.0 |
17 |
579.12 |
5.88 |
94.12 |
0 |
94.12 |
1/1 |
| chr1 |
168908105 |
rs3795612 |
C |
G |
. |
PASS |
0.0711000 |
0.1383000 |
0.0377000 |
0.1034000 |
0.0900000 |
0.0839000 |
37.0 |
69.92 |
30 |
416.09 |
7.69 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
169076212 |
rs1200128 |
G |
C |
. |
PASS |
0.0106000 |
0.1902000 |
0.0327000 |
0.3072000 |
0.1022000 |
0.1174000 |
37.0 |
70.0 |
27 |
466.90 |
11.64 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
169093398 |
rs10919064 |
C |
A |
. |
PASS |
0.3707000 |
0.5677000 |
0.6637000 |
0.5487000 |
0.4550000 |
0.5092000 |
36.48 |
70.0 |
79 |
1000.00 |
0.55 |
58.23 |
0 |
58.23 |
0/1 |
| chr1 |
169093557 |
rs10919065 |
T |
G |
. |
PASS |
0.3933000 |
0.6023000 |
0.8145000 |
0.5964000 |
0.5337000 |
0.5753000 |
37.0 |
70.0 |
10 |
142.14 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
169272451 |
rs10800427 |
A |
T |
. |
PASS |
0.9985000 |
0.9784000 |
0.9970000 |
0.9592000 |
0.9703000 |
0.9820000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169272453 |
rs10800428 |
G |
A |
. |
PASS |
0.9992000 |
0.9784000 |
0.9990000 |
0.9592000 |
0.9714000 |
0.9828000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169345704 |
rs12563090 |
G |
A |
. |
PASS |
0.4357000 |
0.5634000 |
0.1577000 |
0.5944000 |
0.2751000 |
0.3980000 |
36.0 |
70.0 |
20 |
396.57 |
3.33 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
169349914 |
rs56859218 |
G |
T |
. |
PASS |
0.1377000 |
0.1427000 |
0.1339000 |
0.1252000 |
0.0603000 |
0.1200000 |
37.0 |
70.0 |
20 |
279.12 |
12.22 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
169391154 |
rs3820059 |
A |
G |
. |
PASS |
0.6422000 |
0.7176000 |
0.9236000 |
0.6690000 |
0.5102000 |
0.6889000 |
35.67 |
70.0 |
54 |
896.78 |
11.11 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
169394226 |
rs10919168 |
A |
G |
. |
PASS |
0.7269000 |
0.7795000 |
0.9355000 |
0.7346000 |
0.6278000 |
0.7584000 |
35.8 |
70.0 |
22 |
307.01 |
12.73 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
169435027 |
rs2678166 |
C |
T |
. |
PASS |
1.0000000 |
0.9942000 |
1.0000000 |
0.9930000 |
0.9990000 |
0.9976000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169483561 |
rs6027 |
T |
C |
. |
PASS |
0.0023000 |
0.0908000 |
0.0317000 |
0.0656000 |
0.0644000 |
0.0453000 |
36.62 |
70.0 |
69 |
1000.00 |
4.80 |
46.38 |
0 |
46.38 |
0/1 |
| chr1 |
169484552 |
rs3820060 |
T |
G |
. |
PASS |
0.2496000 |
0.4928000 |
0.2798000 |
0.3151000 |
0.3906000 |
0.3301000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169487821 |
rs6013 |
G |
T |
. |
PASS |
0.0076000 |
0.0908000 |
0.0317000 |
0.0656000 |
0.0573000 |
0.0453000 |
36.29 |
70.0 |
35 |
556.12 |
10.08 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
169492676 |
rs9332643 |
C |
T |
. |
PASS |
0.1679000 |
0.3963000 |
0.2460000 |
0.2475000 |
0.3241000 |
0.2618000 |
37.0 |
70.0 |
14 |
343.10 |
2.86 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
169494196 |
rs2301515 |
C |
T |
. |
PASS |
0.3820000 |
0.6009000 |
0.8879000 |
0.3410000 |
0.5603000 |
0.5407000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169498834 |
rs6009 |
T |
C |
. |
PASS |
0.8805000 |
0.9496000 |
1.0000000 |
0.9324000 |
0.9407000 |
0.9363000 |
36.75 |
69.58 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169498975 |
rs6030 |
T |
C |
. |
PASS |
0.1732000 |
0.4885000 |
0.2837000 |
0.3111000 |
0.3875000 |
0.3087000 |
36.59 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169499951 |
rs9332620 |
C |
T |
. |
PASS |
0.1641000 |
0.3977000 |
0.2480000 |
0.2495000 |
0.3231000 |
0.2616000 |
37.0 |
70.0 |
12 |
98.49 |
33.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
169509483 |
rs9332609 |
T |
G |
. |
PASS |
0.0045000 |
0.0922000 |
0.0327000 |
0.0616000 |
0.0644000 |
0.0455000 |
36.59 |
70.0 |
45 |
1000.00 |
5.21 |
64.44 |
0 |
64.44 |
0/1 |
| chr1 |
169510348 |
rs1800595 |
T |
C |
. |
PASS |
0.0045000 |
0.0922000 |
0.0327000 |
0.0616000 |
0.0644000 |
0.0455000 |
36.03 |
69.62 |
187 |
1000.00 |
3.57 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
169510380 |
rs9287090 |
G |
A |
. |
PASS |
0.1717000 |
0.3948000 |
0.2480000 |
0.2535000 |
0.3211000 |
0.2636000 |
36.2 |
69.77 |
203 |
1000.00 |
5.19 |
36.95 |
0 |
36.95 |
0/1 |
| chr1 |
169510524 |
rs1800594 |
A |
G |
. |
PASS |
0.1778000 |
0.4870000 |
0.2808000 |
0.3151000 |
0.3855000 |
0.3095000 |
36.28 |
69.14 |
249 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169511555 |
rs6032 |
T |
C |
. |
PASS |
0.1679000 |
0.3948000 |
0.2480000 |
0.2535000 |
0.3221000 |
0.2628000 |
37.0 |
70.0 |
70 |
1000.00 |
11.43 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
169511734 |
rs4525 |
T |
C |
. |
PASS |
0.1679000 |
0.3948000 |
0.2480000 |
0.2535000 |
0.3221000 |
0.2628000 |
37.0 |
70.0 |
50 |
819.52 |
17.00 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
169511755 |
rs4524 |
T |
C |
. |
PASS |
0.1679000 |
0.3948000 |
0.2480000 |
0.2535000 |
0.3425000 |
0.2668000 |
35.67 |
70.0 |
48 |
914.83 |
17.59 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
169511878 |
rs6018 |
T |
G |
. |
PASS |
0.0045000 |
0.0922000 |
0.0327000 |
0.0616000 |
0.0644000 |
0.0455000 |
35.91 |
70.0 |
47 |
716.84 |
6.38 |
46.81 |
0 |
46.81 |
0/1 |
| chr1 |
169512027 |
rs6021 |
T |
C |
. |
PASS |
0.1679000 |
0.3948000 |
0.2480000 |
0.2535000 |
0.3221000 |
0.2628000 |
37.0 |
70.0 |
55 |
637.39 |
1.82 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
169512039 |
rs6024 |
T |
C |
. |
PASS |
0.0045000 |
0.0922000 |
0.0327000 |
0.0616000 |
0.0644000 |
0.0455000 |
36.47 |
70.0 |
64 |
1000.00 |
1.39 |
70.31 |
0 |
70.31 |
0/1 |
| chr1 |
169512093 |
rs6017 |
A |
G |
. |
PASS |
0.1679000 |
0.3948000 |
0.2480000 |
0.2535000 |
0.3221000 |
0.2628000 |
36.67 |
70.0 |
84 |
1000.00 |
14.29 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
169512120 |
rs6016 |
G |
A |
. |
PASS |
0.1679000 |
0.3948000 |
0.2480000 |
0.2535000 |
0.3221000 |
0.2628000 |
36.72 |
70.0 |
89 |
1000.00 |
3.61 |
48.31 |
0 |
48.31 |
0/1 |
| chr1 |
169513583 |
rs6037 |
G |
T |
. |
PASS |
0.0053000 |
0.1009000 |
0.0298000 |
0.0736000 |
0.0726000 |
0.0503000 |
36.62 |
70.0 |
50 |
1000.00 |
12.50 |
64.00 |
0 |
64.00 |
0/1 |
| chr1 |
169515726 |
rs6036 |
C |
T |
. |
PASS |
0.0053000 |
0.1037000 |
0.0298000 |
0.0736000 |
0.0736000 |
0.0509000 |
35.67 |
70.0 |
102 |
1000.00 |
12.16 |
44.12 |
0 |
44.12 |
0/1 |
| chr1 |
169515874 |
rs13306345 |
T |
A |
. |
PASS |
0.1989000 |
0.3746000 |
0.2202000 |
0.2376000 |
0.3119000 |
0.2574000 |
37.0 |
70.0 |
27 |
341.59 |
6.06 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
169515916 |
rs13306344 |
G |
A |
. |
PASS |
0.1952000 |
0.3372000 |
0.2202000 |
0.1909000 |
0.3016000 |
0.2398000 |
37.0 |
70.0 |
19 |
286.28 |
14.04 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
169519049 |
rs6025 |
T |
C |
. |
PASS |
1.0000000 |
0.9899000 |
1.0000000 |
0.9881000 |
0.9888000 |
0.9940000 |
36.35 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169519894 |
rs6015 |
G |
A |
. |
PASS |
0.0053000 |
0.1023000 |
0.0298000 |
0.0736000 |
0.0746000 |
0.0509000 |
35.5 |
70.0 |
114 |
1000.00 |
7.08 |
49.12 |
0 |
49.12 |
0/1 |
| chr1 |
169521853 |
rs6033 |
A |
G |
. |
PASS |
0.0053000 |
0.0980000 |
0.0298000 |
0.0726000 |
0.0746000 |
0.0501000 |
37.0 |
70.0 |
71 |
1000.00 |
1.66 |
54.93 |
0 |
54.93 |
0/1 |
| chr1 |
169580717 |
rs3917731 |
T |
C |
. |
PASS |
0.0492000 |
0.1427000 |
0.0010000 |
0.2565000 |
0.1196000 |
0.1078000 |
36.08 |
70.0 |
58 |
854.97 |
1.06 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
169580972 |
rs3917730 |
C |
CAT |
. |
PASS |
0.5711000 |
0.3055000 |
0.2024000 |
0.4583000 |
0.4213000 |
0.4081000 |
37.0 |
70.0 |
24 |
493.24 |
6.67 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
169586281 |
rs72712022 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
35.15 |
70.0 |
21 |
423.32 |
6.59 |
61.90 |
0 |
61.90 |
0/1 |
| chr1 |
169591080 |
rs3917688 |
C |
T |
. |
PASS |
0.5772000 |
0.3934000 |
0.3294000 |
0.5089000 |
0.3722000 |
0.4481000 |
37.0 |
70.0 |
106 |
1000.00 |
10.55 |
41.51 |
0 |
41.51 |
0/1 |
| chr1 |
169591093 |
rs3917687 |
A |
G |
. |
PASS |
0.0348000 |
0.1527000 |
0.0020000 |
0.2575000 |
0.1186000 |
0.1056000 |
36.51 |
70.0 |
116 |
1000.00 |
7.67 |
42.24 |
0 |
42.24 |
0/1 |
| chr1 |
169599254 |
rs732314 |
T |
C |
. |
PASS |
0.6611000 |
0.3934000 |
0.3343000 |
0.5109000 |
0.3569000 |
0.4687000 |
37.0 |
70.0 |
27 |
471.04 |
4.76 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
169890933 |
rs518928 |
A |
G |
. |
PASS |
0.9992000 |
0.9568000 |
0.9901000 |
0.8966000 |
0.9254000 |
0.9565000 |
36.13 |
69.64 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169923041 |
rs375091647,rs35674215 |
G |
GT |
. |
PASS |
0.0431000 |
0.2709000 |
0.4911000 |
0.3072000 |
0.2035000 |
0.2492000 |
35.5 |
70.0 |
15 |
551.46 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169941761 |
rs511443 |
A |
T |
. |
PASS |
0.9977000 |
0.9568000 |
0.9980000 |
0.8966000 |
0.9254000 |
0.9577000 |
36.4 |
70.0 |
20 |
783.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169947146 |
rs11396984 |
C |
CA |
. |
PASS |
0.6861000 |
0.7277000 |
0.7530000 |
0.7117000 |
0.6217000 |
0.6979000 |
37.0 |
70.0 |
13 |
415.10 |
6.99 |
84.62 |
0 |
92.31 |
1/1 |
| chr1 |
169951748 |
rs638486 |
A |
G |
. |
PASS |
0.9977000 |
0.9568000 |
0.9980000 |
0.8976000 |
0.9254000 |
0.9579000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169951997 |
rs33943686 |
C |
T |
. |
PASS |
0.0870000 |
0.2867000 |
0.5030000 |
0.3260000 |
0.2280000 |
0.2740000 |
37.0 |
70.0 |
73 |
1000.00 |
5.65 |
43.84 |
0 |
43.84 |
0/1 |
| chr1 |
169952385 |
rs2057249 |
G |
T |
. |
PASS |
0.9992000 |
0.9568000 |
0.9980000 |
0.8976000 |
0.9254000 |
0.9583000 |
37.0 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
169985796 |
rs16862933 |
A |
G |
. |
PASS |
0.0106000 |
0.2723000 |
0.4841000 |
0.2952000 |
0.1800000 |
0.2324000 |
37.0 |
70.0 |
16 |
295.30 |
13.89 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
170135669 |
rs6427234 |
C |
T |
. |
PASS |
0.5076000 |
0.2421000 |
0.1349000 |
0.2724000 |
0.2137000 |
0.2911000 |
36.43 |
70.0 |
61 |
649.09 |
6.40 |
34.43 |
0 |
34.43 |
0/1 |
| chr1 |
170135760 |
rs6427235 |
T |
C |
. |
PASS |
0.5076000 |
0.2435000 |
0.1349000 |
0.2724000 |
0.2137000 |
0.2913000 |
37.0 |
70.0 |
81 |
1000.00 |
6.41 |
45.68 |
0 |
45.68 |
0/1 |
| chr1 |
170135765 |
rs6669514 |
T |
C |
. |
PASS |
0.4758000 |
0.2219000 |
0.1349000 |
0.2207000 |
0.1933000 |
0.2656000 |
37.0 |
70.0 |
82 |
1000.00 |
5.14 |
45.12 |
0 |
45.12 |
0/1 |
| chr1 |
170501385 |
rs7531125 |
A |
C |
. |
PASS |
0.7322000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9275000 |
35.99 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
170508755 |
rs141412003,rs5778667 |
G |
GT |
. |
PASS |
0.0310000 |
0.3084000 |
0.5724000 |
0.1809000 |
0.1933000 |
0.2402000 |
34.33 |
70.0 |
16 |
255.70 |
6.94 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
170511604 |
rs7538037 |
T |
C |
. |
PASS |
0.0454000 |
0.3761000 |
0.6776000 |
0.3211000 |
0.5368000 |
0.3698000 |
35.0 |
70.0 |
21 |
381.55 |
9.52 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
170521376 |
rs913257 |
G |
A |
. |
PASS |
0.5257000 |
0.5865000 |
0.8770000 |
0.4692000 |
0.5215000 |
0.5927000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
170927571 |
rs200635156 |
T |
TTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
32.5 |
70.0 |
18 |
51.85 |
11.11 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
170927615 |
rs17563089 |
A |
G |
. |
PASS |
0.0204000 |
0.0937000 |
0.0000000 |
0.1163000 |
0.0665000 |
0.0547000 |
35.0 |
70.0 |
27 |
124.88 |
22.22 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
170928516 |
rs77715144 |
A |
AAAATAAAT |
. |
PASS |
0.0197000 |
0.0937000 |
0.0000000 |
0.1163000 |
0.0665000 |
0.0545000 |
36.0 |
70.0 |
11 |
81.92 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
170931197 |
rs17563350 |
A |
G |
. |
PASS |
0.0204000 |
0.0937000 |
0.0000000 |
0.1173000 |
0.0665000 |
0.0549000 |
35.0 |
68.33 |
18 |
390.58 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
170959029 |
rs16863922 |
C |
T |
. |
PASS |
0.4047000 |
0.1873000 |
0.0010000 |
0.2227000 |
0.1452000 |
0.2061000 |
35.67 |
70.0 |
46 |
556.93 |
6.76 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
170959088 |
rs28634500 |
C |
T |
. |
PASS |
0.4614000 |
0.1902000 |
0.0010000 |
0.2227000 |
0.1452000 |
0.2214000 |
36.48 |
70.0 |
60 |
735.64 |
11.74 |
38.33 |
0 |
38.33 |
0/1 |
| chr1 |
170965681 |
rs9427213 |
T |
C |
. |
PASS |
0.2405000 |
0.1369000 |
0.0000000 |
0.1382000 |
0.0757000 |
0.1250000 |
36.58 |
69.65 |
94 |
1000.00 |
1.01 |
60.64 |
0 |
60.64 |
0/1 |
| chr1 |
171061990 |
rs2064074 |
A |
G |
. |
PASS |
0.5061000 |
0.5389000 |
0.3849000 |
0.4304000 |
0.5164000 |
0.4730000 |
37.0 |
70.0 |
23 |
274.23 |
16.43 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
171076966 |
rs2266782 |
G |
A |
. |
PASS |
0.4955000 |
0.3199000 |
0.1905000 |
0.3668000 |
0.3108000 |
0.3478000 |
36.37 |
70.0 |
78 |
1000.00 |
10.66 |
48.72 |
0 |
48.72 |
0/1 |
| chr1 |
171077198 |
rs1920149 |
G |
A |
. |
PASS |
0.7405000 |
0.5648000 |
0.3849000 |
0.4304000 |
0.5164000 |
0.5385000 |
35.5 |
70.0 |
45 |
476.39 |
5.00 |
35.56 |
0 |
35.56 |
0/1 |
| chr1 |
171077372 |
rs2066534 |
C |
G |
. |
PASS |
0.2723000 |
0.2104000 |
0.0238000 |
0.1938000 |
0.2771000 |
0.1989000 |
36.14 |
70.0 |
62 |
922.32 |
0.00 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
171168583 |
. |
TCA |
TTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.48 |
70.0 |
107 |
1000.00 |
5.28 |
42.99 |
0 |
42.99 |
0/1 |
| chr1 |
171174531 |
rs2020863 |
A |
G |
. |
PASS |
0.0424000 |
0.2277000 |
0.2371000 |
0.0905000 |
0.2618000 |
0.1597000 |
35.34 |
69.31 |
61 |
947.23 |
7.69 |
47.54 |
0 |
47.54 |
0/1 |
| chr1 |
171178257 |
rs2234889 |
C |
CT |
. |
PASS |
0.0968000 |
0.2305000 |
0.2361000 |
0.0905000 |
0.2638000 |
0.1747000 |
35.5 |
70.0 |
51 |
735.15 |
0.17 |
45.10 |
0 |
45.10 |
0/1 |
| chr1 |
171218955 |
rs4480395 |
T |
A |
. |
PASS |
0.5696000 |
0.6037000 |
0.6111000 |
0.3579000 |
0.5726000 |
0.5407000 |
36.16 |
70.0 |
99 |
1000.00 |
4.78 |
57.58 |
0 |
57.58 |
0/1 |
| chr1 |
171227216 |
rs10912675 |
T |
C |
. |
PASS |
0.7663000 |
0.3444000 |
0.1855000 |
0.2833000 |
0.3845000 |
0.4193000 |
37.0 |
70.0 |
86 |
1000.00 |
4.04 |
44.19 |
0 |
44.19 |
0/1 |
| chr1 |
171244759 |
rs2076320 |
A |
C |
. |
PASS |
0.0877000 |
0.2709000 |
0.1806000 |
0.1431000 |
0.1483000 |
0.1548000 |
37.0 |
70.0 |
12 |
219.66 |
0.00 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
171300959 |
rs2294482 |
T |
C |
. |
PASS |
0.1377000 |
0.4006000 |
0.4365000 |
0.2435000 |
0.2863000 |
0.2845000 |
36.54 |
70.0 |
34 |
939.21 |
9.95 |
76.47 |
0 |
76.47 |
0/1 |
| chr1 |
171302094 |
rs4140632 |
A |
C |
. |
PASS |
0.7867000 |
0.5778000 |
0.4603000 |
0.4592000 |
0.5890000 |
0.5877000 |
35.29 |
70.0 |
16 |
195.60 |
19.64 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
171303836 |
rs45599742 |
G |
A |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0050000 |
0.0000000 |
0.0013978 |
37.0 |
70.0 |
56 |
1000.00 |
8.40 |
60.71 |
0 |
60.71 |
0/1 |
| chr1 |
171303925 |
rs3820170 |
C |
T |
. |
PASS |
0.6982000 |
0.5576000 |
0.4563000 |
0.4304000 |
0.5215000 |
0.5417000 |
37.0 |
70.0 |
21 |
572.64 |
1.19 |
76.19 |
0 |
76.19 |
0/1 |
| chr1 |
171308832 |
rs2223477 |
A |
G |
. |
PASS |
0.6634000 |
0.3069000 |
0.4087000 |
0.3499000 |
0.4581000 |
0.4597000 |
36.6 |
70.0 |
55 |
1000.00 |
4.24 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
171309078 |
rs12057885 |
C |
G |
. |
PASS |
0.6634000 |
0.3069000 |
0.4087000 |
0.3499000 |
0.4581000 |
0.4597000 |
37.0 |
70.0 |
56 |
839.08 |
14.71 |
44.64 |
0 |
44.64 |
0/1 |
| chr1 |
171311003 |
rs1042772 |
A |
C |
. |
PASS |
0.7685000 |
0.4207000 |
0.4206000 |
0.4771000 |
0.6851000 |
0.5755000 |
37.0 |
70.0 |
24 |
308.84 |
1.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
171483662 |
rs200071125 |
AT |
A |
. |
PASS |
0.0159000 |
0.0014000 |
0.0000000 |
0.0050000 |
0.0010000 |
0.0055910 |
36.28 |
70.0 |
30 |
606.52 |
6.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
171491264 |
rs3736679 |
T |
A |
. |
PASS |
0.4992000 |
0.5000000 |
0.5972000 |
0.4970000 |
0.5593000 |
0.5304000 |
37.0 |
70.0 |
21 |
837.55 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171496895 |
rs10753126 |
A |
G |
. |
PASS |
0.7474000 |
0.7349000 |
0.8988000 |
0.8161000 |
0.8548000 |
0.8109000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171509058 |
rs2015996 |
G |
A |
. |
PASS |
0.7383000 |
0.7320000 |
0.8958000 |
0.8161000 |
0.8548000 |
0.8075000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171509327 |
rs760644 |
G |
A |
. |
PASS |
0.7179000 |
0.7248000 |
0.8958000 |
0.8151000 |
0.8548000 |
0.8009000 |
36.5 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171511039 |
rs1687064 |
C |
G |
. |
PASS |
0.7474000 |
0.7349000 |
0.8958000 |
0.8161000 |
0.8548000 |
0.8103000 |
36.51 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171511442 |
rs2272810 |
A |
G |
. |
PASS |
0.1657000 |
0.4712000 |
0.5982000 |
0.4930000 |
0.5276000 |
0.4315000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171514731 |
rs235468 |
C |
G |
. |
PASS |
0.7277000 |
0.7305000 |
0.8968000 |
0.8161000 |
0.8548000 |
0.8047000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171514848 |
rs57131009,rs144272003 |
T |
TTTTA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
70.0 |
24 |
155.10 |
2.38 |
29.17 |
0 |
29.17 |
0/1 |
| chr1 |
171514875 |
rs77131029,rs144856960 |
T |
TATTC |
. |
PASS |
0.0068000 |
0.1643000 |
0.3829000 |
0.1809000 |
0.0736000 |
0.1524000 |
36.54 |
70.0 |
21 |
404.74 |
10.26 |
61.90 |
0 |
61.90 |
0/1 |
| chr1 |
171526570 |
rs1687057 |
G |
A |
. |
PASS |
0.7474000 |
0.7349000 |
0.8958000 |
0.8161000 |
0.8548000 |
0.8103000 |
36.57 |
70.0 |
140 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171526910 |
rs12025905 |
G |
A |
. |
PASS |
0.1097000 |
0.1427000 |
0.1637000 |
0.1233000 |
0.0603000 |
0.1182000 |
36.58 |
70.0 |
120 |
1000.00 |
0.79 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
171527322 |
rs235482 |
A |
G |
. |
PASS |
0.7474000 |
0.7349000 |
0.8968000 |
0.8161000 |
0.8548000 |
0.8105000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171536106 |
rs11580526 |
G |
A |
. |
PASS |
0.0030000 |
0.0317000 |
0.0010000 |
0.0746000 |
0.0133000 |
0.0230000 |
37.0 |
70.0 |
10 |
146.28 |
60.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
171546833 |
rs6685179 |
C |
A |
. |
PASS |
0.5620000 |
0.6081000 |
0.8343000 |
0.6292000 |
0.6513000 |
0.6542000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171548617 |
rs3817772 |
G |
A |
. |
PASS |
0.1422000 |
0.3228000 |
0.5933000 |
0.3131000 |
0.1360000 |
0.2911000 |
36.75 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171548868 |
rs235489 |
T |
C |
. |
PASS |
0.7678000 |
0.7349000 |
0.8988000 |
0.8181000 |
0.8558000 |
0.8169000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171556165 |
rs235501 |
G |
C |
. |
PASS |
0.7088000 |
0.7320000 |
0.8958000 |
0.8151000 |
0.8221000 |
0.7931000 |
36.51 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171605387 |
rs56314834 |
T |
C |
. |
PASS |
0.0008000 |
0.0029000 |
0.0000000 |
0.0070000 |
0.0000000 |
0.0019968 |
36.64 |
69.39 |
65 |
1000.00 |
1.77 |
50.77 |
0 |
50.77 |
0/1 |
| chr1 |
171607702 |
rs2032555 |
C |
T |
. |
PASS |
0.8865000 |
0.6542000 |
0.7917000 |
0.7147000 |
0.8037000 |
0.7845000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171652584 |
rs236893 |
A |
G |
. |
PASS |
0.9962000 |
0.9251000 |
0.9990000 |
0.9354000 |
0.9877000 |
0.9730000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171751051 |
rs2294719 |
A |
G |
. |
PASS |
0.5666000 |
0.4092000 |
0.6567000 |
0.4423000 |
0.2986000 |
0.4856000 |
35.29 |
70.0 |
17 |
196.74 |
10.08 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
171751236 |
rs2294720 |
T |
C |
. |
PASS |
0.7300000 |
0.4395000 |
0.6577000 |
0.4443000 |
0.2996000 |
0.5337000 |
36.64 |
70.0 |
72 |
1000.00 |
5.81 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
171755182 |
rs2232819 |
G |
A |
. |
PASS |
0.0212000 |
0.1138000 |
0.1329000 |
0.1968000 |
0.0890000 |
0.1050000 |
35.91 |
69.39 |
82 |
1000.00 |
6.58 |
40.24 |
0 |
40.24 |
0/1 |
| chr1 |
171761458 |
rs2232824 |
T |
C |
. |
PASS |
0.2655000 |
0.1210000 |
0.1329000 |
0.1978000 |
0.1043000 |
0.1737000 |
37.0 |
70.0 |
11 |
185.05 |
3.03 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
171763549 |
rs2232825 |
C |
T |
. |
PASS |
0.0234000 |
0.1556000 |
0.1329000 |
0.2177000 |
0.0930000 |
0.1164000 |
36.54 |
70.0 |
108 |
1000.00 |
4.56 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
171810960 |
rs12239702 |
A |
G |
. |
PASS |
0.6838000 |
0.5821000 |
0.7907000 |
0.5437000 |
0.5286000 |
0.6328000 |
36.65 |
70.0 |
103 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
171811031 |
rs73031718 |
G |
C |
. |
PASS |
0.0545000 |
0.1715000 |
0.1111000 |
0.1541000 |
0.1534000 |
0.1214000 |
35.67 |
70.0 |
39 |
573.85 |
6.84 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
172038079 |
rs12760234 |
T |
C |
. |
PASS |
0.0658000 |
0.3602000 |
0.1637000 |
0.4076000 |
0.3344000 |
0.2474000 |
37.0 |
70.0 |
34 |
784.14 |
8.56 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
172356437 |
rs6688654 |
A |
G |
. |
PASS |
1.0000000 |
0.9942000 |
1.0000000 |
0.9871000 |
1.0000000 |
0.9966000 |
36.84 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
172356582 |
rs2269612 |
G |
A |
. |
PASS |
0.0976000 |
0.6412000 |
0.8700000 |
0.5805000 |
0.5685000 |
0.5174000 |
35.8 |
70.0 |
19 |
316.03 |
11.58 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
172410967 |
rs1063412 |
G |
A |
. |
PASS |
0.0605000 |
0.5360000 |
0.6597000 |
0.5994000 |
0.5675000 |
0.4543000 |
36.35 |
70.0 |
73 |
1000.00 |
1.18 |
50.68 |
0 |
50.68 |
0/1 |
| chr1 |
172411496 |
rs2230471 |
A |
G |
. |
PASS |
0.9047000 |
0.9092000 |
1.0000000 |
0.8499000 |
0.9591000 |
0.9241000 |
36.66 |
69.06 |
81 |
1000.00 |
16.30 |
43.21 |
0 |
43.21 |
0/1 |
| chr1 |
172417781 |
rs2157451 |
A |
G |
. |
PASS |
0.9871000 |
0.9179000 |
1.0000000 |
0.8519000 |
0.9591000 |
0.9475000 |
35.0 |
70.0 |
11 |
173.03 |
18.18 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
172425529 |
rs2285170 |
C |
G |
. |
PASS |
0.0363000 |
0.4914000 |
0.6567000 |
0.5149000 |
0.5419000 |
0.4191000 |
35.5 |
70.0 |
16 |
237.37 |
12.50 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
172431210 |
rs4916261 |
G |
A |
. |
PASS |
0.6967000 |
0.8530000 |
1.0000000 |
0.8072000 |
0.9346000 |
0.8480000 |
37.0 |
70.0 |
10 |
188.05 |
6.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
172434375 |
rs2901655 |
G |
A |
. |
PASS |
0.6959000 |
0.8530000 |
1.0000000 |
0.8072000 |
0.9346000 |
0.8478000 |
37.0 |
70.0 |
20 |
157.95 |
3.33 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
172437592 |
rs1129942 |
G |
A |
. |
PASS |
0.6710000 |
0.8516000 |
1.0000000 |
0.8072000 |
0.9356000 |
0.8413000 |
37.0 |
70.0 |
46 |
455.63 |
2.61 |
32.61 |
0 |
32.61 |
0/1 |
| chr1 |
172501643 |
rs2239816 |
T |
C |
. |
PASS |
0.2118000 |
0.2104000 |
0.1885000 |
0.2515000 |
0.3906000 |
0.2498000 |
37.0 |
70.0 |
37 |
649.80 |
24.47 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
172502041 |
rs10798043 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
172502340 |
rs2285143 |
T |
C |
. |
PASS |
0.6006000 |
0.2493000 |
0.1895000 |
0.2545000 |
0.4162000 |
0.3636000 |
37.0 |
70.0 |
37 |
983.96 |
6.41 |
72.97 |
0 |
72.97 |
0/1 |
| chr1 |
172502479 |
rs2285144 |
T |
C |
. |
PASS |
0.7171000 |
0.4611000 |
0.3790000 |
0.5835000 |
0.7311000 |
0.5895000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
172502727 |
rs55696309 |
TA |
T |
. |
PASS |
0.2307000 |
0.2089000 |
0.1885000 |
0.2515000 |
0.3906000 |
0.2546000 |
37.0 |
70.0 |
10 |
94.96 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
172522602 |
rs1159378 |
G |
A |
. |
PASS |
0.3797000 |
0.2320000 |
0.1994000 |
0.2306000 |
0.3885000 |
0.2947000 |
37.0 |
70.0 |
16 |
86.46 |
25.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
172547465 |
rs2285664 |
A |
G |
. |
PASS |
0.2368000 |
0.2089000 |
0.2024000 |
0.2296000 |
0.3885000 |
0.2542000 |
36.04 |
70.0 |
44 |
855.33 |
4.00 |
56.82 |
0 |
56.82 |
0/1 |
| chr1 |
172607949 |
rs1894626 |
A |
G |
. |
PASS |
0.4614000 |
0.3862000 |
0.3819000 |
0.4781000 |
0.6851000 |
0.4820000 |
36.37 |
70.0 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
172624758 |
rs68098495,rs371404931 |
AAGG |
A |
. |
PASS |
0.5053000 |
0.3775000 |
0.3681000 |
0.4294000 |
0.5961000 |
0.4625000 |
37.0 |
70.0 |
12 |
50.17 |
50.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
172624864 |
rs2859242 |
C |
T |
. |
PASS |
0.5068000 |
0.3761000 |
0.3681000 |
0.4284000 |
0.5859000 |
0.4605000 |
36.67 |
70.0 |
79 |
1000.00 |
5.84 |
45.57 |
0 |
45.57 |
0/1 |
| chr1 |
172624910 |
rs2859243 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.82 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
172634734 |
rs2639653 |
T |
C |
. |
PASS |
1.0000000 |
0.9942000 |
1.0000000 |
0.9831000 |
1.0000000 |
0.9958000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
173223863 |
rs844648 |
G |
A |
. |
PASS |
0.4985000 |
0.5159000 |
0.4454000 |
0.4095000 |
0.4018000 |
0.4535000 |
37.0 |
70.0 |
48 |
825.54 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
173455644 |
rs72709303 |
C |
G |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0070000 |
0.0000000 |
0.0017971 |
37.0 |
70.0 |
11 |
264.43 |
0.00 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
173470303 |
. |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
17 |
79.29 |
41.18 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
173472465 |
rs72709309 |
G |
A |
. |
PASS |
0.0008000 |
0.0346000 |
0.0000000 |
0.0417000 |
0.0092000 |
0.0151760 |
37.0 |
70.0 |
47 |
536.17 |
1.50 |
36.17 |
0 |
36.17 |
0/1 |
| chr1 |
173794587 |
. |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.83 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
173794587 |
rs139694771 |
CATTATTATT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.8 |
70.0 |
28 |
253.36 |
35.71 |
35.71 |
1 |
100.00 |
0/1 |
| chr1 |
173794587 |
. |
CATTATTATT |
CATT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
28 |
253.36 |
19.84 |
64.29 |
1 |
100.00 |
0/1 |
| chr1 |
173794588 |
. |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.83 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
173794589 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.83 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
173797451 |
rs55878143 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
68.0 |
33 |
273.89 |
32.73 |
30.30 |
0 |
30.30 |
0/1 |
| chr1 |
173832772 |
rs11438260 |
C |
CA |
. |
PASS |
0.5840000 |
0.3458000 |
0.5942000 |
0.3360000 |
0.3405000 |
0.4557000 |
36.14 |
70.0 |
90 |
1000.00 |
0.34 |
43.33 |
0 |
43.33 |
0/1 |
| chr1 |
173855298 |
rs1322775 |
A |
T |
. |
PASS |
0.8442000 |
0.3718000 |
0.5913000 |
0.3410000 |
0.3753000 |
0.5351000 |
36.59 |
70.0 |
50 |
1000.00 |
0.97 |
58.00 |
0 |
58.00 |
0/1 |
| chr1 |
173878832 |
rs5878 |
T |
C |
. |
PASS |
0.8442000 |
0.3732000 |
0.5923000 |
0.3469000 |
0.3701000 |
0.5357000 |
36.51 |
69.18 |
106 |
1000.00 |
11.13 |
46.23 |
0 |
46.23 |
0/1 |
| chr1 |
173878862 |
rs5877 |
T |
C |
. |
PASS |
0.8366000 |
0.4251000 |
0.6190000 |
0.3400000 |
0.3722000 |
0.5453000 |
36.76 |
69.2 |
103 |
1000.00 |
15.50 |
48.54 |
0 |
48.54 |
0/1 |
| chr1 |
173961807 |
rs377599781 |
AAC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
85.92 |
0.00 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
174188285 |
rs2103640 |
G |
A |
. |
PASS |
0.4002000 |
0.3112000 |
0.0615000 |
0.2753000 |
0.2628000 |
0.2678000 |
36.14 |
67.14 |
39 |
422.93 |
15.75 |
35.90 |
0 |
35.90 |
0/1 |
| chr1 |
174274062 |
rs2142864 |
A |
G |
. |
PASS |
0.4682000 |
0.2954000 |
0.0605000 |
0.2386000 |
0.2219000 |
0.2680000 |
35.67 |
70.0 |
16 |
283.30 |
4.17 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
174274349 |
rs2860909 |
T |
G |
. |
PASS |
0.4682000 |
0.2939000 |
0.0605000 |
0.2386000 |
0.2219000 |
0.2678000 |
36.4 |
70.0 |
38 |
672.40 |
6.84 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
174417231 |
rs7516240 |
G |
A |
. |
PASS |
0.9977000 |
0.9769000 |
1.0000000 |
0.9543000 |
0.9908000 |
0.9852000 |
36.05 |
69.21 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
174945171 |
rs142125254,rs72312832 |
CTGTATGACTGTGA |
C |
. |
PASS |
0.0840000 |
0.1210000 |
0.0109000 |
0.2326000 |
0.1933000 |
0.1256000 |
36.25 |
70.0 |
26 |
523.99 |
7.69 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
174969271 |
rs1046439 |
C |
T |
. |
PASS |
0.9818000 |
0.6182000 |
0.6161000 |
0.6918000 |
0.6748000 |
0.7396000 |
37.0 |
70.0 |
48 |
366.07 |
11.86 |
27.08 |
0 |
27.08 |
0/1 |
| chr1 |
174984072 |
. |
TTC |
TT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
11 |
65.92 |
18.18 |
9.09 |
0 |
54.55 |
0/1 |
| chr1 |
174984072 |
rs58881659,rs199952908 |
TTC |
T |
. |
PASS |
0.3222000 |
0.0807000 |
0.0288000 |
0.0885000 |
0.1022000 |
0.1398000 |
30.5 |
70.0 |
11 |
65.92 |
18.18 |
36.36 |
0 |
54.55 |
0/1 |
| chr1 |
175014557 |
rs6425313 |
T |
C |
. |
PASS |
0.9977000 |
0.9654000 |
0.9990000 |
0.9066000 |
0.9683000 |
0.9694000 |
36.64 |
69.82 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175046488 |
rs2072033 |
G |
A |
. |
PASS |
0.8533000 |
0.5173000 |
0.3819000 |
0.5080000 |
0.4888000 |
0.5713000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175046789 |
rs2072032 |
A |
G |
. |
PASS |
0.8533000 |
0.5173000 |
0.3829000 |
0.5080000 |
0.4888000 |
0.5715000 |
36.45 |
70.0 |
44 |
1000.00 |
2.22 |
97.73 |
0 |
100.00 |
1/1 |
| chr1 |
175052828 |
rs2072031 |
G |
A |
. |
PASS |
0.2352000 |
0.3559000 |
0.3204000 |
0.2883000 |
0.3139000 |
0.2951000 |
37.0 |
70.0 |
12 |
223.80 |
19.05 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
175053098 |
rs11577778 |
T |
C |
. |
PASS |
0.1460000 |
0.1037000 |
0.0585000 |
0.1899000 |
0.1339000 |
0.1290000 |
37.0 |
68.75 |
38 |
521.49 |
3.95 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
175053101 |
rs2072030 |
A |
T |
. |
PASS |
0.7617000 |
0.5072000 |
0.3829000 |
0.5080000 |
0.4806000 |
0.5443000 |
36.65 |
69.41 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175054418 |
rs1573759 |
A |
G |
. |
PASS |
0.7980000 |
0.5115000 |
0.3829000 |
0.5080000 |
0.4908000 |
0.5565000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175054548 |
rs1573758 |
C |
T |
. |
PASS |
0.7496000 |
0.5072000 |
0.3829000 |
0.5080000 |
0.4806000 |
0.5411000 |
36.67 |
70.0 |
144 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175087606 |
rs10912888 |
T |
C |
. |
PASS |
0.2738000 |
0.1369000 |
0.0526000 |
0.2336000 |
0.1370000 |
0.1755000 |
35.5 |
70.0 |
15 |
244.53 |
0.00 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
175087677 |
rs6656284 |
G |
A |
. |
PASS |
0.9092000 |
0.3818000 |
0.0833000 |
0.4513000 |
0.3865000 |
0.4758000 |
36.45 |
69.95 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175087729 |
rs6696455 |
T |
C |
. |
PASS |
0.9100000 |
0.3818000 |
0.0704000 |
0.4513000 |
0.3855000 |
0.4732000 |
36.35 |
69.89 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175092674 |
rs2285215 |
C |
T |
. |
PASS |
0.6203000 |
0.6671000 |
0.4921000 |
0.6421000 |
0.5838000 |
0.5982000 |
36.02 |
69.86 |
147 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175092707 |
rs10798333 |
C |
T |
. |
PASS |
0.4297000 |
0.2824000 |
0.0972000 |
0.4433000 |
0.2004000 |
0.3003000 |
36.39 |
70.0 |
173 |
1000.00 |
0.03 |
45.66 |
0 |
45.66 |
0/1 |
| chr1 |
175092840 |
rs2072041 |
T |
C |
. |
PASS |
0.6203000 |
0.6671000 |
0.4931000 |
0.6421000 |
0.5838000 |
0.5984000 |
36.16 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175097331 |
rs10912891 |
G |
A |
. |
PASS |
0.3086000 |
0.4280000 |
0.3581000 |
0.6223000 |
0.3569000 |
0.4075000 |
37.0 |
70.0 |
28 |
468.03 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
175097349 |
rs7547567 |
C |
T |
. |
PASS |
0.8116000 |
0.7435000 |
0.4871000 |
0.6680000 |
0.6002000 |
0.6667000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175097991 |
rs10798335 |
C |
T |
. |
PASS |
0.5809000 |
0.4496000 |
0.3581000 |
0.6292000 |
0.3620000 |
0.4848000 |
37.0 |
70.0 |
27 |
679.90 |
6.63 |
70.37 |
0 |
70.37 |
0/1 |
| chr1 |
175105880 |
rs2072037 |
G |
A |
. |
PASS |
0.6740000 |
0.7954000 |
0.4851000 |
0.7813000 |
0.6524000 |
0.6701000 |
34.82 |
70.0 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175105942 |
rs4650703 |
G |
A |
. |
PASS |
0.9962000 |
0.9827000 |
1.0000000 |
0.9583000 |
0.9980000 |
0.9878000 |
37.0 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175113578 |
rs10912897 |
T |
C |
. |
PASS |
0.9962000 |
0.9741000 |
0.9970000 |
0.9602000 |
0.9959000 |
0.9860000 |
36.77 |
70.0 |
104 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175116252 |
rs4651335 |
C |
G |
. |
PASS |
0.9947000 |
0.9049000 |
0.7331000 |
0.8459000 |
0.7454000 |
0.8510000 |
36.56 |
69.63 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175129924 |
rs150137790,rs11279650 |
CCTTCTTCTT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.13 |
70.0 |
39 |
433.05 |
25.64 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
175129946 |
rs2072035 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.04 |
70.0 |
41 |
864.37 |
14.44 |
60.98 |
0 |
60.98 |
0/1 |
| chr1 |
175129955 |
rs3208835 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.59 |
70.0 |
39 |
532.07 |
15.08 |
43.59 |
0 |
43.59 |
0/1 |
| chr1 |
175130204 |
rs1057239 |
G |
A |
. |
PASS |
0.3752000 |
0.3170000 |
0.1438000 |
0.4394000 |
0.2791000 |
0.3147000 |
37.0 |
70.0 |
21 |
280.26 |
9.52 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
175210458 |
rs11807709 |
A |
C |
. |
PASS |
0.4539000 |
0.5086000 |
0.3929000 |
0.6571000 |
0.6728000 |
0.5327000 |
34.73 |
70.0 |
37 |
1000.00 |
1.50 |
97.30 |
0 |
100.00 |
1/1 |
| chr1 |
175210533 |
rs12750655 |
A |
G |
. |
PASS |
0.9327000 |
0.8112000 |
0.7917000 |
0.7664000 |
0.6840000 |
0.8055000 |
36.29 |
70.0 |
29 |
578.33 |
6.09 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
175293424 |
rs2213635 |
T |
C |
. |
PASS |
0.8427000 |
0.7637000 |
0.7877000 |
0.7197000 |
0.6902000 |
0.7662000 |
37.0 |
70.0 |
32 |
748.39 |
1.79 |
65.62 |
0 |
65.62 |
0/1 |
| chr1 |
175299301 |
rs2027867 |
T |
C |
. |
PASS |
0.8419000 |
0.7637000 |
0.7887000 |
0.7187000 |
0.6902000 |
0.7660000 |
36.19 |
69.46 |
152 |
1000.00 |
4.09 |
48.68 |
0 |
48.68 |
0/1 |
| chr1 |
175324518 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
70.0 |
29 |
365.92 |
15.52 |
41.38 |
1 |
41.38 |
0/1 |
| chr1 |
175324518 |
. |
GCAA |
GT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
31 |
362.32 |
11.29 |
38.71 |
1 |
38.71 |
0/1 |
| chr1 |
175324519 |
. |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
70.0 |
29 |
365.92 |
15.52 |
41.38 |
1 |
41.38 |
0/1 |
| chr1 |
175324521 |
rs55973835 |
A |
T |
. |
PASS |
0.5378000 |
0.7450000 |
0.7738000 |
0.7515000 |
0.6472000 |
0.6783000 |
36.0 |
70.0 |
30 |
362.32 |
10.00 |
40.00 |
1 |
40.00 |
0/1 |
| chr1 |
175324651 |
rs2228359 |
A |
G |
. |
PASS |
0.5197000 |
0.7104000 |
0.7946000 |
0.6819000 |
0.6820000 |
0.6657000 |
36.65 |
69.71 |
147 |
1000.00 |
10.86 |
46.26 |
0 |
46.26 |
0/1 |
| chr1 |
175336530 |
rs6697701 |
T |
C |
. |
PASS |
0.5794000 |
0.7219000 |
0.7976000 |
0.6978000 |
0.6759000 |
0.6857000 |
37.0 |
70.0 |
19 |
160.96 |
19.30 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
175348723 |
rs859427 |
C |
T |
. |
PASS |
0.6460000 |
0.7147000 |
0.8065000 |
0.6491000 |
0.6861000 |
0.6963000 |
36.84 |
69.73 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175355128 |
rs859436 |
C |
G |
. |
PASS |
0.6104000 |
0.7363000 |
0.7252000 |
0.5726000 |
0.6554000 |
0.6522000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175355152 |
rs72723450 |
C |
T |
. |
PASS |
0.1172000 |
0.2550000 |
0.2163000 |
0.2137000 |
0.2658000 |
0.2047000 |
36.6 |
70.0 |
56 |
1000.00 |
7.14 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
175355391 |
rs859437 |
A |
G |
. |
PASS |
0.8018000 |
0.8631000 |
0.8919000 |
0.7724000 |
0.8548000 |
0.8329000 |
36.82 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175365663 |
rs859446 |
G |
A |
. |
PASS |
0.5492000 |
0.5130000 |
0.6032000 |
0.4274000 |
0.4141000 |
0.5042000 |
35.96 |
70.0 |
46 |
765.78 |
4.35 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
175375334 |
rs859400 |
C |
T |
. |
PASS |
0.4349000 |
0.4524000 |
0.5188000 |
0.3380000 |
0.3517000 |
0.4185000 |
36.51 |
70.0 |
84 |
1000.00 |
3.40 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
175375469 |
rs2239819 |
C |
A |
. |
PASS |
0.0885000 |
0.3617000 |
0.5179000 |
0.2525000 |
0.3006000 |
0.2871000 |
37.0 |
70.0 |
103 |
1000.00 |
2.95 |
50.49 |
0 |
50.49 |
0/1 |
| chr1 |
175375683 |
rs859399 |
T |
C |
. |
PASS |
0.7625000 |
0.7781000 |
0.8194000 |
0.6302000 |
0.6462000 |
0.7268000 |
36.29 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175375802 |
rs859398 |
T |
C |
. |
PASS |
0.7443000 |
0.7781000 |
0.8194000 |
0.6302000 |
0.6462000 |
0.7220000 |
36.7 |
70.0 |
122 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
175594081 |
rs12028779 |
T |
C |
. |
PASS |
0.5265000 |
0.3530000 |
0.4812000 |
0.3887000 |
0.3446000 |
0.4301000 |
36.36 |
70.0 |
130 |
1000.00 |
9.67 |
43.08 |
0 |
43.08 |
0/1 |
| chr1 |
175850724 |
rs566842 |
A |
G |
. |
PASS |
0.7814000 |
0.6599000 |
0.7817000 |
0.5944000 |
0.5501000 |
0.6819000 |
36.08 |
70.0 |
25 |
423.29 |
1.85 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
175916267 |
rs6674353 |
T |
C |
. |
PASS |
0.7421000 |
0.9784000 |
0.9990000 |
0.9950000 |
0.9611000 |
0.9201000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176012807 |
rs4233165 |
G |
A |
. |
PASS |
0.8048000 |
0.9870000 |
0.9990000 |
0.9950000 |
0.9611000 |
0.9379000 |
36.04 |
70.0 |
25 |
984.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176118219 |
rs3748618 |
G |
A |
. |
PASS |
0.0378000 |
0.3876000 |
0.3542000 |
0.3986000 |
0.3067000 |
0.2750000 |
36.61 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176585457 |
rs11803745 |
G |
A |
. |
PASS |
0.0023000 |
0.0173000 |
0.0000000 |
0.0567000 |
0.0266000 |
0.0195690 |
34.6 |
65.8 |
15 |
119.23 |
40.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
176659463 |
rs10913241 |
C |
T |
. |
PASS |
0.2247000 |
0.1182000 |
0.0010000 |
0.2008000 |
0.1677000 |
0.1490000 |
36.06 |
69.83 |
115 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176664842 |
rs12138725 |
C |
A |
. |
PASS |
0.3132000 |
0.1729000 |
0.0804000 |
0.2793000 |
0.3538000 |
0.2480000 |
36.23 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176671912 |
rs369562585,rs71129581,rs72294417 |
TGAGAGAGA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.11 |
70.0 |
95 |
1000.00 |
2.89 |
93.68 |
0 |
100.00 |
0/1 |
| chr1 |
176681165 |
rs66731142,rs67144148 |
ATG |
A |
. |
PASS |
0.6089000 |
0.3401000 |
0.0992000 |
0.3907000 |
0.5082000 |
0.4056000 |
35.0 |
70.0 |
51 |
1000.00 |
0.25 |
94.12 |
0 |
94.12 |
1/1 |
| chr1 |
176734756 |
rs3737759 |
C |
T |
. |
PASS |
0.5250000 |
0.2406000 |
0.0556000 |
0.3907000 |
0.3885000 |
0.3375000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176769358 |
rs10913256 |
T |
C |
. |
PASS |
0.4690000 |
0.1686000 |
0.0020000 |
0.2217000 |
0.1708000 |
0.2254000 |
36.68 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176809368 |
rs12118034 |
C |
T |
. |
PASS |
0.0045000 |
0.0821000 |
0.0020000 |
0.2117000 |
0.2055000 |
0.0956000 |
36.12 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176857347 |
rs2072935 |
A |
G |
. |
PASS |
0.8601000 |
0.7233000 |
0.8006000 |
0.8588000 |
0.8609000 |
0.8291000 |
37.0 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176863836 |
rs2281180 |
G |
C |
. |
PASS |
0.8601000 |
0.7233000 |
0.8006000 |
0.8588000 |
0.8620000 |
0.8293000 |
36.85 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176863867 |
rs2228956 |
T |
C |
. |
PASS |
0.8593000 |
0.7233000 |
0.8006000 |
0.8588000 |
0.8609000 |
0.8289000 |
36.74 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176913215 |
rs35968661 |
AT |
A |
. |
PASS |
0.4418000 |
0.4078000 |
0.3770000 |
0.4453000 |
0.4785000 |
0.4319000 |
35.88 |
70.0 |
17 |
564.39 |
3.68 |
94.12 |
0 |
94.12 |
1/1 |
| chr1 |
176992553 |
rs172917 |
A |
G |
. |
PASS |
0.7920000 |
0.4957000 |
0.2054000 |
0.5895000 |
0.3926000 |
0.5142000 |
37.0 |
70.0 |
94 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
176992676 |
rs10798496 |
C |
T |
. |
PASS |
0.2640000 |
0.2248000 |
0.0030000 |
0.4364000 |
0.2454000 |
0.2370000 |
36.49 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
177158537 |
rs66894675 |
T |
TG |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.7 |
69.75 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
177158553 |
rs12117541 |
A |
C |
. |
PASS |
0.3011000 |
0.4251000 |
0.4673000 |
0.4354000 |
0.5123000 |
0.4199000 |
36.29 |
69.41 |
93 |
1000.00 |
7.97 |
36.56 |
0 |
36.56 |
0/1 |
| chr1 |
177158596 |
rs12120894 |
G |
A |
. |
PASS |
0.3601000 |
0.4380000 |
0.4673000 |
0.4583000 |
0.5470000 |
0.4487000 |
36.31 |
69.77 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
177158631 |
rs12128612 |
C |
T |
. |
PASS |
0.3646000 |
0.4380000 |
0.4673000 |
0.4563000 |
0.5470000 |
0.4495000 |
36.62 |
69.68 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
177199323 |
rs3176442 |
C |
T |
. |
PASS |
0.2133000 |
0.4135000 |
0.5298000 |
0.3757000 |
0.5215000 |
0.3976000 |
36.45 |
70.0 |
37 |
763.10 |
8.35 |
59.46 |
0 |
59.46 |
0/1 |
| chr1 |
177236388 |
rs35757954 |
C |
CG |
. |
PASS |
0.4909000 |
0.6081000 |
0.5427000 |
0.6332000 |
0.6288000 |
0.5731000 |
35.91 |
70.0 |
78 |
1000.00 |
2.56 |
56.41 |
0 |
56.41 |
0/1 |
| chr1 |
177247854 |
rs3176443 |
C |
G |
. |
PASS |
0.4017000 |
0.2061000 |
0.2113000 |
0.2187000 |
0.2229000 |
0.2646000 |
36.14 |
70.0 |
119 |
1000.00 |
1.05 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
177562338 |
rs6702691 |
A |
G |
. |
PASS |
0.4856000 |
0.4207000 |
0.5625000 |
0.4384000 |
0.5072000 |
0.4868000 |
37.0 |
70.0 |
79 |
732.23 |
6.33 |
30.38 |
0 |
30.38 |
0/1 |
| chr1 |
177901619 |
rs7531399 |
G |
A |
. |
PASS |
0.1626000 |
0.2522000 |
0.1052000 |
0.2594000 |
0.2444000 |
0.1989000 |
36.85 |
70.0 |
185 |
1000.00 |
0.57 |
44.32 |
0 |
44.32 |
0/1 |
| chr1 |
177901655 |
rs3748792 |
G |
A |
. |
PASS |
0.2655000 |
0.2637000 |
0.1052000 |
0.2604000 |
0.2454000 |
0.2280000 |
36.55 |
70.0 |
256 |
1000.00 |
1.30 |
41.41 |
0 |
41.41 |
0/1 |
| chr1 |
177901658 |
rs7554597 |
C |
T |
. |
PASS |
0.2655000 |
0.2622000 |
0.1052000 |
0.2604000 |
0.2454000 |
0.2278000 |
36.64 |
70.0 |
256 |
1000.00 |
0.57 |
39.45 |
0 |
39.45 |
0/1 |
| chr1 |
177901713 |
rs522367 |
T |
C |
. |
PASS |
0.4947000 |
0.4438000 |
0.2827000 |
0.4433000 |
0.4049000 |
0.4171000 |
36.45 |
70.0 |
283 |
1000.00 |
9.95 |
38.87 |
0 |
38.87 |
0/1 |
| chr1 |
177901741 |
rs684227 |
A |
G |
. |
PASS |
0.4017000 |
0.6210000 |
0.6478000 |
0.5537000 |
0.5225000 |
0.5357000 |
36.68 |
70.0 |
284 |
1000.00 |
4.73 |
39.08 |
0 |
39.08 |
0/1 |
| chr1 |
177902387 |
rs61745560 |
C |
A |
. |
PASS |
0.2655000 |
0.2608000 |
0.1052000 |
0.2604000 |
0.2444000 |
0.2274000 |
36.59 |
70.0 |
55 |
997.17 |
2.76 |
52.73 |
0 |
52.73 |
0/1 |
| chr1 |
177902482 |
rs3813648 |
G |
A |
. |
PASS |
0.2655000 |
0.2622000 |
0.1052000 |
0.2604000 |
0.2423000 |
0.2272000 |
37.0 |
70.0 |
15 |
173.00 |
13.33 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
177902725 |
rs3813649 |
C |
T |
. |
PASS |
0.2352000 |
0.2594000 |
0.1052000 |
0.2604000 |
0.2444000 |
0.2192000 |
37.0 |
70.0 |
120 |
1000.00 |
5.78 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
177902753 |
rs591120 |
G |
C |
. |
PASS |
0.4644000 |
0.4409000 |
0.2808000 |
0.4463000 |
0.4049000 |
0.4089000 |
37.0 |
70.0 |
93 |
1000.00 |
3.13 |
37.63 |
0 |
37.63 |
0/1 |
| chr1 |
177905469 |
rs7522194 |
C |
A |
. |
PASS |
0.1006000 |
0.2349000 |
0.1716000 |
0.2624000 |
0.2495000 |
0.1951000 |
36.14 |
70.0 |
55 |
943.38 |
1.43 |
50.91 |
0 |
50.91 |
0/1 |
| chr1 |
177906292 |
rs61816275 |
C |
T |
. |
PASS |
0.1014000 |
0.2349000 |
0.1716000 |
0.2634000 |
0.2444000 |
0.1945000 |
37.0 |
70.0 |
24 |
438.30 |
19.23 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
177915474 |
rs842192 |
A |
C |
. |
PASS |
0.6324000 |
0.8761000 |
0.8224000 |
0.8618000 |
0.8425000 |
0.7915000 |
37.0 |
70.0 |
58 |
1000.00 |
1.29 |
55.17 |
0 |
55.17 |
0/1 |
| chr1 |
177923440 |
rs12129817 |
T |
G |
. |
PASS |
0.1778000 |
0.2032000 |
0.0288000 |
0.2286000 |
0.2055000 |
0.1669000 |
36.23 |
70.0 |
60 |
1000.00 |
6.34 |
51.67 |
0 |
51.67 |
0/1 |
| chr1 |
177929987 |
rs12040910 |
T |
C |
. |
PASS |
0.8941000 |
0.7882000 |
0.8075000 |
0.7485000 |
0.7771000 |
0.8099000 |
37.0 |
70.0 |
71 |
1000.00 |
9.82 |
49.30 |
0 |
49.30 |
0/1 |
| chr1 |
177930096 |
rs867275 |
T |
C |
. |
PASS |
0.1082000 |
0.3444000 |
0.3105000 |
0.2744000 |
0.3701000 |
0.2662000 |
37.0 |
70.0 |
53 |
894.03 |
9.72 |
49.06 |
0 |
49.06 |
0/1 |
| chr1 |
177930894 |
rs945641 |
C |
T |
. |
PASS |
0.8933000 |
0.7839000 |
0.7718000 |
0.7376000 |
0.7740000 |
0.7991000 |
37.0 |
70.0 |
40 |
599.00 |
8.33 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
178063551 |
rs316255 |
A |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9998000 |
37.0 |
70.0 |
18 |
712.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178483231 |
rs10913563 |
G |
A |
. |
PASS |
0.2239000 |
0.4827000 |
0.4048000 |
0.4533000 |
0.3487000 |
0.3666000 |
36.19 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178485960 |
rs72707045 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0010000 |
0.0030000 |
0.0020000 |
0.0011981 |
37.0 |
70.0 |
14 |
176.01 |
19.05 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
178489978 |
rs3813636 |
T |
G |
. |
PASS |
0.2247000 |
0.4827000 |
0.4077000 |
0.4543000 |
0.3558000 |
0.3690000 |
36.38 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178528993 |
rs6425487 |
T |
C |
. |
PASS |
0.5045000 |
0.7233000 |
0.9058000 |
0.8658000 |
0.8395000 |
0.7536000 |
37.0 |
69.67 |
12 |
182.04 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
178590394 |
rs2811300 |
T |
C |
. |
PASS |
0.6566000 |
0.5951000 |
0.4256000 |
0.4513000 |
0.4581000 |
0.5216000 |
36.24 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178716163 |
rs7528223 |
G |
A |
. |
PASS |
0.4145000 |
0.1153000 |
0.1042000 |
0.1034000 |
0.0941000 |
0.1855000 |
37.0 |
69.75 |
24 |
967.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178745947 |
rs6665037 |
T |
G |
. |
PASS |
0.1415000 |
0.0648000 |
0.1012000 |
0.0765000 |
0.0736000 |
0.0964000 |
36.74 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178780650 |
rs12131426 |
A |
G |
. |
PASS |
0.8101000 |
0.5735000 |
0.5437000 |
0.5815000 |
0.4366000 |
0.6048000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178854162 |
rs6425503 |
C |
T |
. |
PASS |
0.8101000 |
0.5735000 |
0.5387000 |
0.5835000 |
0.4387000 |
0.6046000 |
35.67 |
70.0 |
18 |
692.36 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178858711 |
rs10798635 |
C |
A |
. |
PASS |
0.7088000 |
0.3401000 |
0.2282000 |
0.4175000 |
0.2209000 |
0.4071000 |
34.75 |
70.0 |
16 |
592.66 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178858759 |
rs3753534 |
G |
A |
. |
PASS |
0.7088000 |
0.3401000 |
0.2282000 |
0.4175000 |
0.2209000 |
0.4071000 |
36.25 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178871217 |
rs2275100 |
G |
A |
. |
PASS |
0.4796000 |
0.1182000 |
0.1032000 |
0.1024000 |
0.0941000 |
0.2027000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
178972276 |
rs6425511 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.49 |
70.0 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179004658 |
rs7541378 |
A |
G |
. |
PASS |
0.4107000 |
0.3588000 |
0.2401000 |
0.3738000 |
0.4172000 |
0.3630000 |
35.29 |
70.0 |
27 |
166.64 |
16.93 |
25.93 |
0 |
25.93 |
0/1 |
| chr1 |
179041011 |
rs3820163 |
A |
G |
. |
PASS |
0.9259000 |
0.5288000 |
0.6260000 |
0.6372000 |
0.6094000 |
0.6907000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179051300 |
rs2296377 |
T |
C |
. |
PASS |
0.9879000 |
0.6441000 |
0.6677000 |
0.7117000 |
0.7157000 |
0.7672000 |
36.35 |
70.0 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179052006 |
rs2274227 |
G |
T |
. |
PASS |
0.4644000 |
0.3689000 |
0.2867000 |
0.3698000 |
0.3906000 |
0.3820000 |
37.0 |
70.0 |
16 |
291.16 |
2.78 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
179054692 |
rs912758 |
T |
G |
. |
PASS |
0.9259000 |
0.5317000 |
0.6091000 |
0.6332000 |
0.5961000 |
0.6843000 |
37.0 |
70.0 |
11 |
419.85 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179055020 |
rs2296376 |
C |
T |
. |
PASS |
0.1112000 |
0.0663000 |
0.2550000 |
0.1402000 |
0.0736000 |
0.1324000 |
36.11 |
70.0 |
64 |
878.67 |
4.51 |
42.19 |
0 |
42.19 |
0/1 |
| chr1 |
179087934 |
rs2171959 |
T |
C |
. |
PASS |
0.7247000 |
0.5274000 |
0.5407000 |
0.6163000 |
0.6769000 |
0.6292000 |
35.8 |
70.0 |
20 |
775.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179089213 |
rs1858551 |
C |
T |
. |
PASS |
0.7247000 |
0.5274000 |
0.5407000 |
0.6163000 |
0.6769000 |
0.6292000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179089475 |
rs9726961 |
C |
G |
. |
PASS |
0.7247000 |
0.5274000 |
0.5407000 |
0.6163000 |
0.6769000 |
0.6292000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179089491 |
rs9728480 |
A |
C |
. |
PASS |
0.7247000 |
0.5274000 |
0.5407000 |
0.6163000 |
0.6769000 |
0.6292000 |
36.43 |
70.0 |
21 |
825.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179089518 |
rs9727252 |
C |
G |
. |
PASS |
0.6838000 |
0.5144000 |
0.5407000 |
0.6163000 |
0.6789000 |
0.6170000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179190220 |
rs149971150 |
A |
AC |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0040000 |
0.0000000 |
0.0009984 |
37.0 |
69.6 |
10 |
130.69 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
179304892 |
rs1034269 |
T |
C |
. |
PASS |
0.3502000 |
0.7017000 |
0.8423000 |
0.5467000 |
0.6022000 |
0.5867000 |
37.0 |
70.0 |
10 |
229.82 |
0.00 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
179310262 |
rs11576517 |
C |
T |
. |
PASS |
0.1354000 |
0.2406000 |
0.4782000 |
0.2406000 |
0.3517000 |
0.2823000 |
37.0 |
70.0 |
52 |
729.96 |
14.34 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
179312102 |
rs4651024 |
T |
C |
. |
PASS |
0.3843000 |
0.4294000 |
0.4871000 |
0.5497000 |
0.4468000 |
0.4567000 |
37.0 |
70.0 |
55 |
971.56 |
2.08 |
50.91 |
0 |
50.91 |
0/1 |
| chr1 |
179319580 |
rs3753527 |
T |
C |
. |
PASS |
0.7307000 |
0.7205000 |
0.8700000 |
0.6730000 |
0.6646000 |
0.7328000 |
36.45 |
70.0 |
39 |
757.08 |
4.90 |
56.41 |
0 |
56.41 |
0/1 |
| chr1 |
179320665 |
rs13306732 |
A |
G |
. |
PASS |
0.2126000 |
0.3674000 |
0.4097000 |
0.4404000 |
0.4673000 |
0.3692000 |
37.0 |
70.0 |
17 |
292.30 |
11.76 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
179347832 |
rs10798674 |
T |
C |
. |
PASS |
0.2799000 |
0.5274000 |
0.6974000 |
0.5159000 |
0.6186000 |
0.5118000 |
37.0 |
70.0 |
71 |
1000.00 |
3.82 |
43.66 |
0 |
43.66 |
0/1 |
| chr1 |
179364391 |
rs61173288 |
A |
G |
. |
PASS |
0.1884000 |
0.4135000 |
0.4246000 |
0.4294000 |
0.4335000 |
0.3634000 |
37.0 |
70.0 |
10 |
104.51 |
30.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
179380472 |
rs5779024 |
GT |
G |
. |
PASS |
0.5469000 |
0.6455000 |
0.4792000 |
0.6938000 |
0.6319000 |
0.5931000 |
36.0 |
70.0 |
26 |
368.95 |
5.13 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
179416878 |
rs7521291 |
C |
T |
. |
PASS |
0.1543000 |
0.3357000 |
0.3720000 |
0.4135000 |
0.4305000 |
0.3293000 |
37.0 |
70.0 |
31 |
500.77 |
9.89 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
179417347 |
rs6425558 |
C |
T |
. |
PASS |
0.6785000 |
0.8401000 |
0.8016000 |
0.7982000 |
0.8344000 |
0.7802000 |
37.0 |
70.0 |
26 |
306.98 |
3.08 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
179437523 |
rs55704523 |
A |
T |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0030000 |
0.0153000 |
0.0037939 |
37.0 |
70.0 |
13 |
383.72 |
8.39 |
84.62 |
0 |
84.62 |
0/1 |
| chr1 |
179437827 |
rs7514278 |
G |
A |
. |
PASS |
0.7769000 |
0.8948000 |
0.9048000 |
0.8936000 |
0.8630000 |
0.8592000 |
33.0 |
70.0 |
14 |
151.99 |
38.10 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
179452194 |
rs6668035 |
C |
T |
. |
PASS |
0.2927000 |
0.5793000 |
0.7500000 |
0.5318000 |
0.6554000 |
0.5433000 |
37.0 |
70.0 |
28 |
593.34 |
6.30 |
60.71 |
0 |
60.71 |
0/1 |
| chr1 |
179462149 |
rs7549194 |
A |
G |
. |
PASS |
0.9932000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9978000 |
36.23 |
69.35 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179494665 |
rs4620484 |
C |
T |
. |
PASS |
0.7988000 |
0.9107000 |
0.9643000 |
0.9056000 |
0.8722000 |
0.8834000 |
37.0 |
70.0 |
13 |
346.11 |
7.69 |
76.92 |
0 |
76.92 |
0/1 |
| chr1 |
179504025 |
rs141228272 |
AAAG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.83 |
70.0 |
25 |
333.91 |
20.67 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
179504043 |
rs6658180 |
C |
G |
. |
PASS |
0.2496000 |
0.4035000 |
0.4256000 |
0.4115000 |
0.4673000 |
0.3814000 |
35.0 |
70.0 |
32 |
344.29 |
10.42 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
179520254 |
rs1410591 |
C |
G |
. |
PASS |
0.5946000 |
0.6354000 |
0.4911000 |
0.6153000 |
0.6166000 |
0.5879000 |
36.29 |
70.0 |
17 |
658.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179520506 |
rs1410592 |
G |
A |
. |
PASS |
0.5946000 |
0.6340000 |
0.4911000 |
0.6153000 |
0.6166000 |
0.5877000 |
36.68 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179522221 |
rs9286930 |
A |
G |
. |
PASS |
0.5726000 |
0.4308000 |
0.4524000 |
0.3748000 |
0.4356000 |
0.4623000 |
36.4 |
70.0 |
40 |
670.53 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
179522227 |
rs61826364 |
A |
G |
. |
PASS |
0.0378000 |
0.2061000 |
0.0516000 |
0.2406000 |
0.1840000 |
0.1332000 |
35.8 |
70.0 |
43 |
649.51 |
6.98 |
46.51 |
0 |
46.51 |
0/1 |
| chr1 |
179522340 |
rs61826365 |
C |
G |
. |
PASS |
0.0386000 |
0.2061000 |
0.0516000 |
0.2406000 |
0.1840000 |
0.1334000 |
34.0 |
70.0 |
15 |
73.30 |
60.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
179528917 |
rs12401708 |
G |
A |
. |
PASS |
0.0386000 |
0.2061000 |
0.0516000 |
0.2396000 |
0.1851000 |
0.1334000 |
36.64 |
70.0 |
55 |
1000.00 |
2.42 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
179528942 |
rs12401711 |
G |
A |
. |
PASS |
0.0386000 |
0.2061000 |
0.0516000 |
0.2396000 |
0.1851000 |
0.1334000 |
36.57 |
70.0 |
43 |
995.66 |
5.15 |
65.12 |
0 |
65.12 |
0/1 |
| chr1 |
179544898 |
rs1079292 |
T |
C |
. |
PASS |
0.8230000 |
0.9683000 |
0.9812000 |
0.9920000 |
0.9356000 |
0.9309000 |
37.0 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179556174 |
rs12121642 |
T |
C |
. |
PASS |
0.1142000 |
0.1354000 |
0.1062000 |
0.2445000 |
0.1115000 |
0.1412000 |
35.5 |
70.0 |
18 |
235.50 |
8.33 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
179556848 |
rs7549026 |
T |
A |
. |
PASS |
0.1142000 |
0.1354000 |
0.1062000 |
0.2445000 |
0.1115000 |
0.1412000 |
36.57 |
70.0 |
39 |
1000.00 |
2.56 |
71.79 |
0 |
71.79 |
0/1 |
| chr1 |
179558324 |
rs368115293 |
G |
A |
. |
PASS |
0.0106000 |
0.0072000 |
0.0000000 |
0.0119000 |
0.0307000 |
0.0121800 |
35.29 |
70.0 |
28 |
444.02 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
179561645 |
rs4652418 |
A |
C |
. |
PASS |
0.6823000 |
0.8372000 |
0.9038000 |
0.7614000 |
0.7587000 |
0.7792000 |
37.0 |
70.0 |
16 |
165.85 |
8.33 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
179561683 |
rs4652419 |
A |
T |
. |
PASS |
0.6815000 |
0.8329000 |
0.9038000 |
0.7455000 |
0.7566000 |
0.7748000 |
37.0 |
70.0 |
34 |
404.06 |
20.81 |
38.24 |
0 |
38.24 |
0/1 |
| chr1 |
179600001 |
rs6704505 |
A |
G |
. |
PASS |
0.0908000 |
0.0447000 |
0.1081000 |
0.0855000 |
0.0521000 |
0.0793000 |
37.0 |
70.0 |
53 |
935.81 |
5.73 |
50.94 |
0 |
50.94 |
0/1 |
| chr1 |
179600042 |
rs72706738 |
G |
A |
. |
PASS |
0.0061000 |
0.0115000 |
0.1081000 |
0.0219000 |
0.0378000 |
0.0367000 |
36.0 |
70.0 |
48 |
801.53 |
4.17 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
179604864 |
rs4628468 |
C |
T |
. |
PASS |
0.7163000 |
0.8631000 |
0.9048000 |
0.7773000 |
0.7679000 |
0.7969000 |
37.0 |
70.0 |
55 |
846.25 |
5.09 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
179605058 |
rs4483370 |
G |
A |
. |
PASS |
0.3616000 |
0.4798000 |
0.4782000 |
0.4851000 |
0.4438000 |
0.4423000 |
37.0 |
70.0 |
21 |
238.48 |
2.38 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
179621224 |
rs10913851 |
G |
A |
. |
PASS |
0.0628000 |
0.0144000 |
0.1081000 |
0.0219000 |
0.0378000 |
0.0521000 |
37.0 |
70.0 |
52 |
1000.00 |
1.03 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
179631242 |
rs35448215 |
G |
A |
. |
PASS |
0.0129000 |
0.0980000 |
0.0456000 |
0.2117000 |
0.1697000 |
0.1018000 |
37.0 |
70.0 |
19 |
411.59 |
3.51 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
179632536 |
rs72706766 |
A |
G |
. |
PASS |
0.0628000 |
0.0144000 |
0.1081000 |
0.0219000 |
0.0378000 |
0.0521000 |
36.38 |
69.49 |
87 |
1000.00 |
5.84 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
179632727 |
rs7513095 |
G |
A |
. |
PASS |
0.3714000 |
0.4784000 |
0.4782000 |
0.4871000 |
0.4448000 |
0.4453000 |
37.0 |
70.0 |
20 |
325.04 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
179784230 |
rs33933453 |
ACGCG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.2 |
70.0 |
10 |
314.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179784249 |
rs111748247 |
G |
C |
. |
PASS |
0.8260000 |
0.2795000 |
0.1329000 |
0.3141000 |
0.3272000 |
0.4105000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179816816 |
rs7531195 |
T |
A |
. |
PASS |
0.0976000 |
0.0865000 |
0.0079000 |
0.1342000 |
0.1309000 |
0.0919000 |
35.29 |
70.0 |
16 |
195.60 |
7.14 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
179852074 |
rs1281378 |
T |
C |
. |
PASS |
0.3812000 |
0.6758000 |
0.7778000 |
0.6133000 |
0.6902000 |
0.6088000 |
35.36 |
70.0 |
76 |
621.69 |
3.83 |
28.95 |
0 |
28.95 |
0/1 |
| chr1 |
179858444 |
rs2245425 |
G |
A |
. |
PASS |
0.4644000 |
0.6916000 |
0.7778000 |
0.6064000 |
0.7096000 |
0.6354000 |
37.0 |
70.0 |
24 |
354.76 |
0.76 |
45.83 |
0 |
45.83 |
0/1 |
| chr1 |
179876988 |
rs609521 |
C |
G |
. |
PASS |
0.3041000 |
0.6715000 |
0.7778000 |
0.6093000 |
0.6748000 |
0.5841000 |
35.56 |
69.2 |
49 |
824.13 |
2.61 |
51.02 |
0 |
51.02 |
0/1 |
| chr1 |
179887125 |
rs627897 |
G |
A |
. |
PASS |
0.8449000 |
0.9510000 |
0.9147000 |
0.9523000 |
0.9642000 |
0.9185000 |
36.47 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
179983665 |
rs2501607 |
G |
A |
. |
PASS |
0.2481000 |
0.7349000 |
0.7004000 |
0.6461000 |
0.6483000 |
0.5647000 |
35.5 |
70.0 |
19 |
232.50 |
19.74 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
179989742 |
rs2477120 |
G |
C |
. |
PASS |
0.2436000 |
0.7349000 |
0.7044000 |
0.6461000 |
0.6483000 |
0.5643000 |
37.0 |
70.0 |
77 |
1000.00 |
2.87 |
62.34 |
0 |
62.34 |
0/1 |
| chr1 |
179993793 |
rs4622030 |
T |
C |
. |
PASS |
0.7315000 |
0.9222000 |
0.8393000 |
0.8668000 |
0.9489000 |
0.8492000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180013235 |
rs12124336 |
T |
G |
. |
PASS |
0.1271000 |
0.0432000 |
0.0020000 |
0.0368000 |
0.0706000 |
0.0611000 |
36.0 |
70.0 |
87 |
1000.00 |
14.18 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
180022343 |
rs9425854 |
T |
G |
. |
PASS |
0.2489000 |
0.7349000 |
0.7073000 |
0.6461000 |
0.6472000 |
0.5661000 |
37.0 |
70.0 |
16 |
207.61 |
17.86 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
180053158 |
rs56173179 |
A |
C |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0030000 |
0.0000000 |
0.0009984 |
37.0 |
70.0 |
23 |
228.31 |
11.96 |
34.78 |
0 |
34.78 |
0/1 |
| chr1 |
180059811 |
rs10798729 |
A |
C |
. |
PASS |
0.2489000 |
0.7349000 |
0.7083000 |
0.6461000 |
0.6472000 |
0.5663000 |
37.0 |
70.0 |
25 |
138.76 |
21.33 |
24.00 |
0 |
24.00 |
0/1 |
| chr1 |
180080115 |
rs3767202 |
T |
G |
. |
PASS |
0.1989000 |
0.7248000 |
0.7083000 |
0.6451000 |
0.6472000 |
0.5515000 |
36.14 |
70.0 |
33 |
436.83 |
7.36 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
180124288 |
rs77647137 |
G |
C |
. |
PASS |
0.2814000 |
0.0490000 |
0.0020000 |
0.0686000 |
0.0971000 |
0.1142000 |
36.38 |
70.0 |
78 |
1000.00 |
7.69 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
180124379 |
rs35481032 |
T |
C |
. |
PASS |
0.8116000 |
0.3573000 |
0.3433000 |
0.3668000 |
0.4080000 |
0.4862000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180135757 |
rs10715769 |
TG |
T |
. |
PASS |
0.3767000 |
0.0778000 |
0.0069000 |
0.0964000 |
0.1810000 |
0.1663000 |
35.42 |
70.0 |
79 |
1000.00 |
0.39 |
56.96 |
0 |
56.96 |
0/1 |
| chr1 |
180145088 |
rs2298206 |
A |
G |
. |
PASS |
0.8094000 |
0.9669000 |
0.8472000 |
0.9563000 |
0.8978000 |
0.8856000 |
36.83 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180155376 |
rs2298207 |
C |
G |
. |
PASS |
0.6513000 |
0.7608000 |
0.5139000 |
0.7793000 |
0.6861000 |
0.6713000 |
36.2 |
70.0 |
80 |
1000.00 |
5.00 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
180155382 |
rs3216058 |
AG |
A |
. |
PASS |
0.8079000 |
0.9294000 |
0.5873000 |
0.9374000 |
0.8681000 |
0.8181000 |
36.85 |
70.0 |
68 |
1000.00 |
4.52 |
60.29 |
0 |
60.29 |
0/1 |
| chr1 |
180159797 |
rs3215795 |
TC |
T |
. |
PASS |
0.7247000 |
0.7738000 |
0.5139000 |
0.7793000 |
0.6861000 |
0.6925000 |
35.81 |
70.0 |
39 |
489.89 |
1.92 |
41.03 |
0 |
41.03 |
0/1 |
| chr1 |
180163578 |
rs67343209 |
G |
T |
. |
PASS |
0.1483000 |
0.0965000 |
0.0714000 |
0.0477000 |
0.0879000 |
0.0937000 |
36.17 |
70.0 |
53 |
991.17 |
7.94 |
54.72 |
0 |
54.72 |
0/1 |
| chr1 |
180165699 |
rs3738115 |
A |
C |
. |
PASS |
0.0030000 |
0.0375000 |
0.2520000 |
0.0189000 |
0.0266000 |
0.0657000 |
37.0 |
70.0 |
40 |
720.16 |
9.29 |
52.50 |
0 |
52.50 |
0/1 |
| chr1 |
180229566 |
rs357054 |
T |
C |
. |
PASS |
0.6778000 |
0.6268000 |
0.4990000 |
0.5527000 |
0.3783000 |
0.5511000 |
36.76 |
70.0 |
208 |
1000.00 |
4.96 |
49.04 |
0 |
49.04 |
0/1 |
| chr1 |
180231411 |
rs701762 |
G |
A |
. |
PASS |
0.9365000 |
0.9553000 |
0.9901000 |
0.9314000 |
0.8763000 |
0.9371000 |
35.96 |
70.0 |
33 |
804.90 |
15.02 |
69.70 |
0 |
69.70 |
0/1 |
| chr1 |
180231416 |
. |
G |
GAAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.14 |
70.0 |
34 |
742.54 |
24.71 |
29.41 |
0 |
64.71 |
0/1 |
| chr1 |
180235728 |
rs16855642 |
C |
T |
. |
PASS |
0.1195000 |
0.0187000 |
0.0099000 |
0.0149000 |
0.0184000 |
0.0427000 |
36.57 |
70.0 |
129 |
1000.00 |
6.84 |
43.41 |
0 |
43.41 |
0/1 |
| chr1 |
180240752 |
rs3845397 |
C |
T |
. |
PASS |
0.0983000 |
0.3112000 |
0.5615000 |
0.5288000 |
0.6043000 |
0.4063000 |
36.43 |
70.0 |
34 |
730.37 |
4.48 |
61.76 |
0 |
61.76 |
0/1 |
| chr1 |
180243524 |
rs7536561 |
A |
G |
. |
PASS |
0.1165000 |
0.3256000 |
0.5942000 |
0.5487000 |
0.6176000 |
0.4263000 |
36.76 |
70.0 |
86 |
1000.00 |
5.55 |
56.98 |
0 |
56.98 |
0/1 |
| chr1 |
180257692 |
rs2254465 |
A |
C |
. |
PASS |
0.9675000 |
0.9582000 |
0.9871000 |
0.9404000 |
0.9018000 |
0.9519000 |
37.0 |
70.0 |
12 |
136.12 |
26.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
180567335 |
rs10753220 |
C |
T |
. |
PASS |
0.6891000 |
0.6873000 |
0.6607000 |
0.7594000 |
0.7117000 |
0.7017000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180567390 |
rs10753221 |
C |
A |
. |
PASS |
0.6762000 |
0.6859000 |
0.6617000 |
0.7594000 |
0.7106000 |
0.6981000 |
37.0 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180567428 |
rs10798783 |
G |
A |
. |
PASS |
0.3585000 |
0.5303000 |
0.6081000 |
0.6640000 |
0.6074000 |
0.5425000 |
36.37 |
70.0 |
58 |
574.59 |
19.06 |
32.76 |
0 |
32.76 |
0/1 |
| chr1 |
180567541 |
rs10798784 |
A |
G |
. |
PASS |
0.6899000 |
0.6873000 |
0.6607000 |
0.7614000 |
0.7117000 |
0.7023000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180757117 |
rs34984251 |
G |
GT |
. |
PASS |
0.9985000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9996000 |
37.0 |
70.0 |
11 |
408.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180849494 |
rs10914123 |
T |
C |
. |
PASS |
0.5749000 |
0.6311000 |
0.8393000 |
0.5080000 |
0.5849000 |
0.6244000 |
36.1 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180885430 |
rs10732273 |
T |
C |
. |
PASS |
0.9773000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9940000 |
36.44 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180896902 |
rs3845417 |
A |
G |
. |
PASS |
0.9153000 |
0.9885000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9758000 |
36.28 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180897521 |
rs7544551 |
C |
T |
. |
PASS |
0.7390000 |
0.9582000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9247000 |
36.33 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180897792 |
rs71804221,rs71988721,rs35197779 |
ATGC |
A |
. |
PASS |
0.6286000 |
0.5735000 |
0.4375000 |
0.6312000 |
0.7290000 |
0.6026000 |
34.5 |
69.47 |
91 |
1000.00 |
9.37 |
41.76 |
1 |
41.76 |
0/1 |
| chr1 |
180897793 |
rs10554533 |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.43 |
69.46 |
78 |
1000.00 |
1.80 |
47.44 |
1 |
47.44 |
0/1 |
| chr1 |
180897794 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.43 |
69.46 |
79 |
1000.00 |
3.49 |
46.84 |
1 |
46.84 |
0/1 |
| chr1 |
180905352 |
rs3795505 |
C |
T |
. |
PASS |
0.1536000 |
0.4006000 |
0.2599000 |
0.4245000 |
0.5061000 |
0.3325000 |
36.2 |
70.0 |
66 |
997.97 |
7.27 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
180905448 |
rs3795504 |
G |
T |
. |
PASS |
0.3548000 |
0.4280000 |
0.2748000 |
0.4533000 |
0.5337000 |
0.4036000 |
37.0 |
70.0 |
52 |
976.43 |
3.85 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
180913597 |
rs2331995 |
A |
G |
. |
PASS |
0.9871000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9964000 |
36.82 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180934761 |
rs201671740,rs35849727 |
CGT |
C |
. |
PASS |
0.8994000 |
0.8040000 |
0.9107000 |
0.7932000 |
0.8701000 |
0.8614000 |
36.66 |
67.86 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180934977 |
rs4652544 |
C |
T |
. |
PASS |
0.8994000 |
0.8040000 |
0.9107000 |
0.7932000 |
0.8701000 |
0.8614000 |
36.45 |
69.95 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180953853 |
rs3747957 |
A |
G |
. |
PASS |
0.4486000 |
0.6282000 |
0.6310000 |
0.5686000 |
0.3978000 |
0.5244000 |
36.81 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
180991665 |
rs12565758 |
C |
G |
. |
PASS |
0.1936000 |
0.3732000 |
0.2004000 |
0.3419000 |
0.2832000 |
0.2672000 |
34.6 |
70.0 |
15 |
115.09 |
13.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
181018180 |
rs2236411 |
C |
G |
. |
PASS |
0.2179000 |
0.0706000 |
0.0605000 |
0.0795000 |
0.0532000 |
0.1058000 |
37.0 |
68.41 |
30 |
583.18 |
0.78 |
56.67 |
0 |
56.67 |
0/1 |
| chr1 |
181018236 |
rs2236410 |
A |
G |
. |
PASS |
0.1263000 |
0.2161000 |
0.3502000 |
0.1372000 |
0.1616000 |
0.1929000 |
36.5 |
68.58 |
60 |
777.42 |
1.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
181021483 |
rs35223984 |
C |
T |
. |
PASS |
0.0000000 |
0.0216000 |
0.0000000 |
0.0318000 |
0.0010000 |
0.0095847 |
37.0 |
70.0 |
63 |
1000.00 |
1.73 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
181022895 |
rs2275469 |
C |
A |
. |
PASS |
0.6566000 |
0.5173000 |
0.7827000 |
0.2843000 |
0.5123000 |
0.5597000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
181024404 |
rs3747956 |
G |
A |
. |
PASS |
0.5340000 |
0.5058000 |
0.7609000 |
0.2942000 |
0.5072000 |
0.5224000 |
36.48 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
181058313 |
rs3747955 |
G |
A |
. |
PASS |
0.2489000 |
0.4452000 |
0.6002000 |
0.3777000 |
0.6104000 |
0.4433000 |
37.0 |
69.23 |
66 |
854.90 |
3.03 |
39.39 |
0 |
39.39 |
0/1 |
| chr1 |
181058618 |
rs1416829 |
C |
G |
. |
PASS |
0.2489000 |
0.4452000 |
0.6012000 |
0.3777000 |
0.6115000 |
0.4437000 |
37.0 |
70.0 |
69 |
1000.00 |
10.47 |
44.93 |
0 |
44.93 |
0/1 |
| chr1 |
181058643 |
rs1361365 |
A |
G |
. |
PASS |
0.8797000 |
0.9856000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9661000 |
37.0 |
70.0 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
181147914 |
rs7523662 |
A |
G |
. |
PASS |
0.3654000 |
0.6556000 |
0.6885000 |
0.6143000 |
0.6145000 |
0.5693000 |
36.38 |
70.0 |
67 |
1000.00 |
0.23 |
58.21 |
0 |
58.21 |
0/1 |
| chr1 |
181549547 |
rs10494540 |
T |
G |
. |
PASS |
0.3949000 |
0.4323000 |
0.6419000 |
0.4881000 |
0.3231000 |
0.4545000 |
36.4 |
70.0 |
115 |
1000.00 |
0.29 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
181684605 |
rs12407563 |
A |
G |
. |
PASS |
0.8321000 |
0.8170000 |
0.8056000 |
0.8300000 |
0.8937000 |
0.8363000 |
35.82 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
181686216 |
rs7540850 |
T |
C |
. |
PASS |
0.2005000 |
0.6311000 |
0.7550000 |
0.6829000 |
0.6431000 |
0.5551000 |
37.0 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
181719679 |
rs704332 |
C |
T |
. |
PASS |
0.4554000 |
0.5130000 |
0.7192000 |
0.5467000 |
0.5256000 |
0.5485000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
181727273 |
rs704329 |
G |
A |
. |
PASS |
0.1581000 |
0.3213000 |
0.3790000 |
0.4115000 |
0.4356000 |
0.3303000 |
36.57 |
70.0 |
51 |
971.58 |
2.38 |
54.90 |
0 |
54.90 |
0/1 |
| chr1 |
181750469 |
rs704328 |
G |
T |
. |
PASS |
0.1225000 |
0.4078000 |
0.3829000 |
0.4324000 |
0.1820000 |
0.2883000 |
37.0 |
70.0 |
16 |
628.69 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
181752923 |
rs36163765,rs3830692 |
AAGCTT |
A |
. |
PASS |
0.8805000 |
0.7493000 |
0.8274000 |
0.7565000 |
0.8067000 |
0.8123000 |
35.48 |
70.0 |
77 |
1000.00 |
0.03 |
97.40 |
0 |
97.40 |
1/1 |
| chr1 |
181759657 |
rs704326 |
G |
A |
. |
PASS |
0.1203000 |
0.3242000 |
0.3879000 |
0.4314000 |
0.1789000 |
0.2764000 |
36.31 |
70.0 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
181870217 |
rs498212 |
C |
T |
. |
PASS |
0.3835000 |
0.5908000 |
0.5377000 |
0.6392000 |
0.4325000 |
0.5042000 |
36.24 |
69.68 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182026813 |
rs12568050 |
G |
C |
. |
PASS |
0.0900000 |
0.1210000 |
0.2837000 |
0.1471000 |
0.2546000 |
0.1769000 |
36.78 |
69.63 |
113 |
1000.00 |
0.56 |
47.79 |
0 |
47.79 |
0/1 |
| chr1 |
182027022 |
rs12564283 |
C |
T |
. |
PASS |
0.0862000 |
0.1210000 |
0.2827000 |
0.1471000 |
0.2546000 |
0.1757000 |
36.5 |
70.0 |
121 |
1000.00 |
3.34 |
39.67 |
0 |
39.67 |
0/1 |
| chr1 |
182226882 |
rs12044140 |
G |
A |
. |
PASS |
0.1906000 |
0.0807000 |
0.3105000 |
0.0825000 |
0.1779000 |
0.1753000 |
37.0 |
70.0 |
15 |
256.54 |
21.67 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
182427659 |
rs1822271 |
C |
T |
. |
PASS |
0.3298000 |
0.2983000 |
0.3829000 |
0.2048000 |
0.2965000 |
0.3045000 |
37.0 |
70.0 |
17 |
417.60 |
14.71 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
182429295 |
rs10572829,rs57601655 |
CTG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.11 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182491107 |
rs607269 |
A |
C |
. |
PASS |
0.8805000 |
0.7896000 |
0.6131000 |
0.8748000 |
0.7423000 |
0.7859000 |
35.5 |
70.0 |
24 |
926.82 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182496829 |
rs7535533 |
A |
G |
. |
PASS |
0.1914000 |
0.2435000 |
0.4315000 |
0.3877000 |
0.3231000 |
0.3121000 |
36.52 |
70.0 |
73 |
1000.00 |
0.11 |
68.49 |
0 |
68.49 |
0/1 |
| chr1 |
182501933 |
rs266534 |
C |
A |
. |
PASS |
0.4478000 |
0.4784000 |
0.5357000 |
0.6581000 |
0.5593000 |
0.5337000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182509292 |
rs3856115 |
A |
G |
. |
PASS |
0.4289000 |
0.4049000 |
0.4415000 |
0.5427000 |
0.5378000 |
0.4722000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182509617 |
rs3911280 |
C |
A |
. |
PASS |
0.3707000 |
0.3963000 |
0.4415000 |
0.5417000 |
0.5368000 |
0.4553000 |
37.0 |
70.0 |
18 |
712.24 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182509646 |
rs12749557 |
T |
C |
. |
PASS |
0.4289000 |
0.4049000 |
0.4415000 |
0.5427000 |
0.5378000 |
0.4722000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182544581 |
rs36053738 |
C |
T |
. |
PASS |
0.0008000 |
0.0115000 |
0.0000000 |
0.0398000 |
0.0041000 |
0.0105830 |
36.31 |
70.0 |
62 |
1000.00 |
13.82 |
56.45 |
0 |
56.45 |
0/1 |
| chr1 |
182551337 |
rs627928 |
A |
C |
. |
PASS |
0.2632000 |
0.4424000 |
0.7093000 |
0.5686000 |
0.4714000 |
0.4798000 |
37.0 |
70.0 |
49 |
943.69 |
4.23 |
55.10 |
0 |
55.10 |
0/1 |
| chr1 |
182554557 |
rs486907 |
C |
T |
. |
PASS |
0.0666000 |
0.2233000 |
0.2421000 |
0.3708000 |
0.3016000 |
0.2306000 |
37.0 |
70.0 |
53 |
1000.00 |
18.04 |
60.38 |
0 |
60.38 |
0/1 |
| chr1 |
182556036 |
rs3738579 |
A |
G |
. |
PASS |
0.0658000 |
0.2089000 |
0.2450000 |
0.3598000 |
0.3037000 |
0.2272000 |
37.0 |
70.0 |
31 |
459.00 |
16.59 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
182569626 |
rs1144566 |
T |
C |
. |
PASS |
0.9766000 |
0.9856000 |
1.0000000 |
0.9781000 |
0.9928000 |
0.9860000 |
36.4 |
69.75 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182571003 |
rs610367 |
C |
T |
. |
PASS |
0.3192000 |
0.7089000 |
0.7054000 |
0.6064000 |
0.6646000 |
0.5761000 |
37.0 |
70.0 |
12 |
182.03 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
182571277 |
rs569790 |
C |
T |
. |
PASS |
0.1278000 |
0.4683000 |
0.2381000 |
0.3817000 |
0.4581000 |
0.3127000 |
37.0 |
70.0 |
43 |
422.89 |
6.31 |
32.56 |
0 |
32.56 |
0/1 |
| chr1 |
182573227 |
rs509476 |
T |
C |
. |
PASS |
0.9977000 |
0.9885000 |
1.0000000 |
0.9781000 |
0.9928000 |
0.9920000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182581157 |
rs34085461 |
T |
G |
. |
PASS |
0.5121000 |
0.5360000 |
0.3413000 |
0.5199000 |
0.5900000 |
0.4978000 |
36.76 |
70.0 |
122 |
1000.00 |
9.44 |
40.98 |
0 |
40.98 |
0/1 |
| chr1 |
182784022 |
rs2275171 |
T |
C |
. |
PASS |
0.7557000 |
0.5058000 |
0.3810000 |
0.5696000 |
0.6319000 |
0.5841000 |
36.53 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182825772 |
rs72727044 |
T |
A |
. |
PASS |
0.0008000 |
0.0029000 |
0.0000000 |
0.0050000 |
0.0010000 |
0.0017971 |
34.6 |
70.0 |
28 |
272.79 |
14.29 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
182850727 |
rs6677840 |
T |
C |
. |
PASS |
0.9470000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9846000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
182972542 |
rs10911186 |
A |
G |
. |
PASS |
0.3169000 |
0.6110000 |
0.6280000 |
0.5328000 |
0.5982000 |
0.5186000 |
36.81 |
70.0 |
115 |
1000.00 |
7.47 |
55.65 |
0 |
55.65 |
0/1 |
| chr1 |
182993025 |
rs10911194 |
C |
T |
. |
PASS |
0.3192000 |
0.6110000 |
0.6280000 |
0.5338000 |
0.5992000 |
0.5196000 |
35.98 |
70.0 |
117 |
1000.00 |
9.24 |
50.43 |
0 |
50.43 |
0/1 |
| chr1 |
183072590 |
rs2296288 |
T |
C |
. |
PASS |
0.3321000 |
0.6268000 |
0.6280000 |
0.5646000 |
0.6022000 |
0.5319000 |
36.61 |
70.0 |
70 |
1000.00 |
3.23 |
44.29 |
0 |
44.29 |
0/1 |
| chr1 |
183077296 |
rs3835273 |
A |
AG |
. |
PASS |
0.3313000 |
0.6254000 |
0.6290000 |
0.5626000 |
0.6022000 |
0.5314000 |
37.0 |
70.0 |
11 |
169.45 |
15.15 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
183077615 |
rs3765521 |
C |
T |
. |
PASS |
0.2398000 |
0.6138000 |
0.6290000 |
0.5596000 |
0.6033000 |
0.5052000 |
37.0 |
70.0 |
26 |
348.74 |
17.48 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
183077618 |
rs3765522 |
C |
T |
. |
PASS |
0.3321000 |
0.6254000 |
0.6290000 |
0.5626000 |
0.6033000 |
0.5317000 |
37.0 |
70.0 |
25 |
351.76 |
11.64 |
44.00 |
0 |
44.00 |
0/1 |
| chr1 |
183079853 |
rs6672093 |
T |
C |
. |
PASS |
0.2398000 |
0.6138000 |
0.6280000 |
0.5596000 |
0.6033000 |
0.5050000 |
37.0 |
70.0 |
28 |
509.81 |
10.00 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
183084606 |
rs34038496 |
TAC |
TGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
133.11 |
17.14 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
183085696 |
rs6424888 |
A |
G |
. |
PASS |
0.3268000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6022000 |
0.5302000 |
35.29 |
70.0 |
24 |
175.68 |
26.19 |
29.17 |
0 |
29.17 |
0/1 |
| chr1 |
183085755 |
rs20563 |
A |
G |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5317000 |
36.4 |
70.0 |
51 |
637.42 |
12.35 |
39.22 |
0 |
39.22 |
0/1 |
| chr1 |
183086757 |
rs2296292 |
A |
C |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5317000 |
37.0 |
69.62 |
91 |
1000.00 |
5.18 |
58.24 |
0 |
58.24 |
0/1 |
| chr1 |
183093875 |
rs20557 |
T |
C |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5317000 |
36.71 |
70.0 |
82 |
1000.00 |
4.88 |
51.22 |
0 |
51.22 |
0/1 |
| chr1 |
183094547 |
rs20558 |
T |
C |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5317000 |
35.7 |
70.0 |
71 |
1000.00 |
7.61 |
52.11 |
0 |
52.11 |
0/1 |
| chr1 |
183094802 |
rs10797850 |
G |
A |
. |
PASS |
0.1089000 |
0.3660000 |
0.5159000 |
0.4384000 |
0.3333000 |
0.3365000 |
37.0 |
70.0 |
13 |
95.49 |
19.23 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
183095234 |
rs1886501 |
A |
G |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5317000 |
36.67 |
70.0 |
59 |
1000.00 |
10.64 |
61.02 |
0 |
61.02 |
0/1 |
| chr1 |
183095477 |
rs2296293 |
G |
A |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5317000 |
34.33 |
70.0 |
19 |
262.25 |
23.39 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
183097956 |
rs71127335,rs34133998,rs113559578 |
G |
GTTA |
. |
PASS |
0.3321000 |
0.6239000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5315000 |
36.25 |
70.0 |
30 |
484.20 |
6.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
183098001 |
rs10797851 |
A |
G |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6022000 |
0.5315000 |
37.0 |
70.0 |
11 |
268.58 |
13.64 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
183099560 |
rs20559 |
G |
A |
. |
PASS |
0.0008000 |
0.0144000 |
0.0000000 |
0.0467000 |
0.0204000 |
0.0155750 |
35.43 |
70.0 |
57 |
720.66 |
13.12 |
40.35 |
0 |
40.35 |
0/1 |
| chr1 |
183099701 |
rs2296300 |
G |
A |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5317000 |
36.5 |
70.0 |
51 |
804.50 |
5.39 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
183100555 |
rs2333620 |
T |
C |
. |
PASS |
0.3298000 |
0.6239000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5310000 |
33.57 |
69.86 |
27 |
154.64 |
10.58 |
25.93 |
0 |
25.93 |
0/1 |
| chr1 |
183100563 |
rs4997370 |
G |
T |
. |
PASS |
0.4183000 |
0.6470000 |
0.6756000 |
0.5845000 |
0.6247000 |
0.5755000 |
35.29 |
69.86 |
21 |
180.55 |
38.10 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
183100596 |
rs2333619 |
A |
G |
. |
PASS |
0.3313000 |
0.6254000 |
0.6240000 |
0.5636000 |
0.6033000 |
0.5308000 |
37.0 |
70.0 |
11 |
62.74 |
54.55 |
27.27 |
0 |
36.36 |
0/1 |
| chr1 |
183101471 |
rs12061219 |
G |
A |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6022000 |
0.5315000 |
36.0 |
70.0 |
11 |
107.52 |
54.55 |
36.36 |
0 |
54.55 |
0/1 |
| chr1 |
183101686 |
rs12095664 |
G |
A |
. |
PASS |
0.3321000 |
0.6254000 |
0.6280000 |
0.5636000 |
0.6033000 |
0.5317000 |
37.0 |
70.0 |
33 |
578.30 |
3.92 |
51.52 |
0 |
51.52 |
0/1 |
| chr1 |
183104013 |
rs2296299 |
G |
A |
. |
PASS |
0.3729000 |
0.4063000 |
0.5188000 |
0.4573000 |
0.4039000 |
0.4299000 |
37.0 |
70.0 |
21 |
238.49 |
20.24 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
183105534 |
rs20560 |
T |
C |
. |
PASS |
0.4539000 |
0.6354000 |
0.6250000 |
0.5666000 |
0.5787000 |
0.5605000 |
34.88 |
70.0 |
27 |
560.33 |
0.87 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
183105705 |
rs20561 |
G |
A |
. |
PASS |
0.1702000 |
0.3833000 |
0.5109000 |
0.4433000 |
0.3170000 |
0.3518000 |
35.77 |
70.0 |
64 |
1000.00 |
4.81 |
60.94 |
0 |
60.94 |
0/1 |
| chr1 |
183155482 |
rs684527 |
C |
A |
. |
PASS |
0.0666000 |
0.3516000 |
0.4315000 |
0.3052000 |
0.3088000 |
0.2748000 |
36.35 |
70.0 |
83 |
1000.00 |
9.90 |
44.58 |
0 |
44.58 |
0/1 |
| chr1 |
183155700 |
rs6678888 |
C |
A |
. |
PASS |
0.1838000 |
0.3934000 |
0.4365000 |
0.3201000 |
0.3384000 |
0.3213000 |
35.0 |
70.0 |
13 |
162.87 |
0.00 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
183155715 |
rs60707856 |
CT |
C |
. |
PASS |
0.7118000 |
0.6066000 |
0.7014000 |
0.4672000 |
0.5378000 |
0.6120000 |
34.4 |
70.0 |
11 |
120.70 |
0.00 |
45.45 |
1 |
45.45 |
0/1 |
| chr1 |
183155715 |
. |
CTC |
CA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
11 |
100.36 |
0.00 |
36.36 |
1 |
36.36 |
0/1 |
| chr1 |
183155717 |
rs61418038 |
C |
A |
. |
PASS |
0.7118000 |
0.6066000 |
0.7014000 |
0.4672000 |
0.5378000 |
0.6120000 |
37.0 |
70.0 |
10 |
100.36 |
0.00 |
40.00 |
1 |
40.00 |
0/1 |
| chr1 |
183176970 |
rs10668798,rs34720363 |
G |
GTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.43 |
70.0 |
60 |
1000.00 |
1.40 |
31.67 |
0 |
65.00 |
0/1 |
| chr1 |
183177218 |
rs647347 |
A |
G |
. |
PASS |
0.4713000 |
0.4957000 |
0.5734000 |
0.4553000 |
0.4928000 |
0.4962000 |
36.33 |
70.0 |
48 |
562.91 |
20.83 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
183230516 |
rs67770192,rs66537330 |
ATCCGC |
A |
. |
PASS |
0.4924000 |
0.6772000 |
0.6310000 |
0.8410000 |
0.6677000 |
0.6502000 |
36.04 |
70.0 |
26 |
980.20 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
183253213 |
rs607332 |
G |
A |
. |
PASS |
0.3994000 |
0.2968000 |
0.2480000 |
0.3608000 |
0.3875000 |
0.3446000 |
36.59 |
70.0 |
67 |
965.19 |
17.81 |
43.28 |
0 |
43.28 |
0/1 |
| chr1 |
183253959 |
rs603850 |
T |
G |
. |
PASS |
0.6014000 |
0.3617000 |
0.3244000 |
0.4016000 |
0.5337000 |
0.4591000 |
37.0 |
70.0 |
164 |
1000.00 |
1.36 |
48.17 |
0 |
48.17 |
0/1 |
| chr1 |
183259125 |
rs2301877 |
G |
A |
. |
PASS |
0.0817000 |
0.2882000 |
0.3006000 |
0.3787000 |
0.2904000 |
0.2548000 |
37.0 |
70.0 |
19 |
286.28 |
1.17 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
183486859 |
rs789169 |
G |
A |
. |
PASS |
0.9584000 |
0.9135000 |
0.9980000 |
0.8698000 |
0.9560000 |
0.9419000 |
35.91 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
183616926 |
rs1174657 |
T |
C |
. |
PASS |
0.4932000 |
0.3473000 |
0.2440000 |
0.4006000 |
0.3190000 |
0.3702000 |
36.34 |
70.0 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
183617105 |
rs1174658 |
A |
G |
. |
PASS |
0.4932000 |
0.3473000 |
0.2440000 |
0.4006000 |
0.3190000 |
0.3702000 |
36.29 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
183675846 |
rs60540773 |
GC |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.67 |
69.42 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
183775638 |
rs11579867 |
A |
T |
. |
PASS |
0.0522000 |
0.2320000 |
0.0496000 |
0.3231000 |
0.1912000 |
0.1581000 |
36.33 |
70.0 |
42 |
576.82 |
28.57 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
183816623 |
. |
CTTCA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
23 |
270.69 |
11.86 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
183852914 |
rs10797919 |
G |
C |
. |
PASS |
0.4750000 |
0.4308000 |
0.5099000 |
0.4165000 |
0.4192000 |
0.4533000 |
37.0 |
70.0 |
19 |
365.68 |
11.48 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
183867085 |
rs3814330 |
C |
T |
. |
PASS |
0.3812000 |
0.2795000 |
0.4990000 |
0.2714000 |
0.3722000 |
0.3670000 |
36.5 |
70.0 |
61 |
774.40 |
6.42 |
39.34 |
0 |
39.34 |
0/1 |
| chr1 |
183871637 |
rs4604659 |
G |
A |
. |
PASS |
0.6112000 |
0.5173000 |
0.5694000 |
0.5308000 |
0.5051000 |
0.5529000 |
37.0 |
70.0 |
13 |
95.48 |
11.54 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
183876287 |
rs16861715 |
T |
C |
. |
PASS |
0.2088000 |
0.2478000 |
0.4970000 |
0.2684000 |
0.3476000 |
0.3113000 |
37.0 |
70.0 |
31 |
333.70 |
22.87 |
35.48 |
0 |
35.48 |
0/1 |
| chr1 |
183895178 |
rs4328036 |
G |
A |
. |
PASS |
0.5726000 |
0.5576000 |
0.5764000 |
0.5606000 |
0.5470000 |
0.5639000 |
35.91 |
70.0 |
127 |
1000.00 |
3.58 |
51.97 |
0 |
51.97 |
0/1 |
| chr1 |
183942950 |
rs2296714 |
C |
T |
. |
PASS |
0.1846000 |
0.5360000 |
0.3115000 |
0.7654000 |
0.6104000 |
0.4587000 |
35.5 |
70.0 |
16 |
608.82 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
183947757 |
rs3833521 |
G |
GA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
366.64 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
184006549 |
rs114661926 |
C |
G |
. |
PASS |
0.1203000 |
0.2824000 |
0.4425000 |
0.3042000 |
0.3211000 |
0.2837000 |
37.0 |
70.0 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
184020945 |
rs2274432 |
G |
A |
. |
PASS |
0.1233000 |
0.3040000 |
0.4504000 |
0.3270000 |
0.3732000 |
0.3039000 |
36.43 |
69.84 |
127 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
184023529 |
rs1046934 |
A |
C |
. |
PASS |
0.1233000 |
0.3026000 |
0.4504000 |
0.3270000 |
0.3691000 |
0.3029000 |
35.48 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
184240508 |
rs10797953 |
C |
T |
. |
PASS |
0.3139000 |
0.3674000 |
0.4990000 |
0.4453000 |
0.4346000 |
0.4085000 |
36.83 |
69.72 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
184663537 |
rs9425343 |
A |
C |
. |
PASS |
0.0356000 |
0.3401000 |
0.5784000 |
0.3698000 |
0.5440000 |
0.3534000 |
36.4 |
70.0 |
45 |
651.34 |
6.67 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
184663581 |
rs9425634 |
T |
C |
. |
PASS |
0.1906000 |
0.3963000 |
0.5873000 |
0.4324000 |
0.5726000 |
0.4221000 |
35.8 |
70.0 |
44 |
646.48 |
20.91 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
184663643 |
rs34236444 |
TA |
T |
. |
PASS |
0.1906000 |
0.3977000 |
0.6300000 |
0.4344000 |
0.5859000 |
0.4339000 |
37.0 |
70.0 |
29 |
580.77 |
10.14 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
184675814 |
rs1062994 |
G |
A |
. |
PASS |
0.0257000 |
0.3372000 |
0.5784000 |
0.3708000 |
0.5440000 |
0.3506000 |
36.48 |
69.13 |
105 |
1000.00 |
0.95 |
43.81 |
0 |
43.81 |
0/1 |
| chr1 |
184677464 |
rs3736757 |
G |
A |
. |
PASS |
0.8525000 |
0.5101000 |
0.7004000 |
0.4761000 |
0.6125000 |
0.6520000 |
36.14 |
70.0 |
34 |
437.96 |
13.45 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
184681802 |
rs4651230 |
T |
C |
. |
PASS |
0.0340000 |
0.3401000 |
0.5784000 |
0.3698000 |
0.5440000 |
0.3530000 |
35.5 |
70.0 |
11 |
256.57 |
4.55 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
184695571 |
rs10752941 |
C |
T |
. |
PASS |
0.8381000 |
0.5086000 |
0.7004000 |
0.4751000 |
0.6166000 |
0.6486000 |
37.0 |
70.0 |
11 |
101.50 |
36.36 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
184706212 |
rs10711907 |
GT |
G |
. |
PASS |
0.8177000 |
0.5072000 |
0.7004000 |
0.4751000 |
0.6166000 |
0.6430000 |
34.33 |
70.0 |
33 |
679.78 |
1.73 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
184764067 |
rs581100 |
C |
G |
. |
PASS |
0.1868000 |
0.3660000 |
0.5635000 |
0.3459000 |
0.4509000 |
0.3710000 |
35.97 |
70.0 |
35 |
1000.00 |
2.18 |
97.14 |
0 |
100.00 |
1/1 |
| chr1 |
184777177 |
rs543912 |
C |
A |
. |
PASS |
0.0136000 |
0.2522000 |
0.4058000 |
0.1660000 |
0.3252000 |
0.2171000 |
36.4 |
70.0 |
41 |
663.37 |
3.17 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
184777467 |
rs338566 |
A |
T |
. |
PASS |
0.6528000 |
0.3775000 |
0.5397000 |
0.2594000 |
0.3947000 |
0.4625000 |
37.0 |
70.0 |
11 |
264.43 |
15.91 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
184886737 |
rs66930146 |
C |
A |
. |
PASS |
0.4425000 |
0.3948000 |
0.4157000 |
0.4284000 |
0.5429000 |
0.4473000 |
37.0 |
70.0 |
71 |
1000.00 |
10.11 |
47.89 |
0 |
47.89 |
0/1 |
| chr1 |
185069561 |
rs1046592 |
A |
G |
. |
PASS |
0.2436000 |
0.1441000 |
0.3542000 |
0.0636000 |
0.1258000 |
0.1929000 |
37.0 |
70.0 |
10 |
104.51 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
185113216 |
rs368392638,rs150245199 |
AAG |
A |
. |
PASS |
0.1641000 |
0.1398000 |
0.2500000 |
0.0626000 |
0.0838000 |
0.1420000 |
36.25 |
70.0 |
14 |
243.99 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
185143721 |
rs10489579 |
A |
G |
. |
PASS |
0.6982000 |
0.3487000 |
0.2718000 |
0.3439000 |
0.4008000 |
0.4347000 |
37.0 |
70.0 |
72 |
1000.00 |
2.78 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
185153545 |
rs76544683 |
G |
GT |
. |
PASS |
0.6989000 |
0.3458000 |
0.3720000 |
0.3469000 |
0.4294000 |
0.4609000 |
37.0 |
70.0 |
11 |
127.69 |
14.55 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
185171869 |
rs6698109 |
A |
G |
. |
PASS |
0.2179000 |
0.2464000 |
0.1964000 |
0.3410000 |
0.3885000 |
0.2756000 |
35.96 |
70.0 |
68 |
1000.00 |
2.81 |
67.65 |
0 |
67.65 |
0/1 |
| chr1 |
185195953 |
rs3766717 |
C |
T |
. |
PASS |
0.6982000 |
0.3444000 |
0.2768000 |
0.3449000 |
0.4008000 |
0.4353000 |
35.56 |
69.76 |
42 |
849.35 |
13.52 |
59.52 |
0 |
59.52 |
0/1 |
| chr1 |
185219680 |
rs12135172 |
C |
T |
. |
PASS |
0.5514000 |
0.3256000 |
0.3978000 |
0.3370000 |
0.4233000 |
0.4211000 |
35.15 |
70.0 |
59 |
827.93 |
1.69 |
44.07 |
0 |
44.07 |
0/1 |
| chr1 |
185240474 |
rs12041704 |
A |
G |
. |
PASS |
0.2428000 |
0.3963000 |
0.2450000 |
0.4433000 |
0.4642000 |
0.3480000 |
37.0 |
70.0 |
50 |
903.06 |
4.00 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
185259731 |
rs2378909 |
A |
G |
. |
PASS |
0.3487000 |
0.4135000 |
0.2431000 |
0.4423000 |
0.4877000 |
0.3824000 |
37.0 |
70.0 |
15 |
256.54 |
1.67 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
185833565 |
rs7556537 |
A |
C |
. |
PASS |
0.9735000 |
0.4438000 |
0.4792000 |
0.4493000 |
0.5368000 |
0.6100000 |
35.96 |
70.0 |
23 |
897.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
185988567 |
rs11290212 |
CT |
C |
. |
PASS |
0.6672000 |
0.5303000 |
0.5516000 |
0.4950000 |
0.4519000 |
0.5483000 |
34.13 |
70.0 |
42 |
1000.00 |
3.66 |
92.86 |
0 |
92.86 |
0/1 |
| chr1 |
186022032 |
rs10911808 |
T |
G |
. |
PASS |
0.9546000 |
0.6657000 |
0.5933000 |
0.5249000 |
0.5409000 |
0.6747000 |
37.0 |
69.26 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186026474 |
rs12129650 |
T |
C |
. |
PASS |
0.5393000 |
0.6124000 |
0.5675000 |
0.4960000 |
0.4550000 |
0.5300000 |
36.55 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186031041 |
rs7522627 |
C |
T |
. |
PASS |
0.8495000 |
0.6470000 |
0.5903000 |
0.5348000 |
0.5849000 |
0.6544000 |
35.8 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186039006 |
rs761905 |
C |
T |
. |
PASS |
0.9221000 |
0.6585000 |
0.5754000 |
0.5040000 |
0.5102000 |
0.6514000 |
36.25 |
68.75 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186050417 |
rs10798035 |
A |
G |
. |
PASS |
0.6952000 |
0.6311000 |
0.5694000 |
0.4990000 |
0.4959000 |
0.5827000 |
35.59 |
69.71 |
70 |
1000.00 |
0.17 |
97.14 |
0 |
97.14 |
1/1 |
| chr1 |
186055371 |
rs6425017 |
A |
G |
. |
PASS |
0.9213000 |
0.6599000 |
0.5794000 |
0.5169000 |
0.5440000 |
0.6613000 |
35.7 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186057181 |
rs10911816 |
T |
C |
. |
PASS |
0.9690000 |
0.6686000 |
0.5942000 |
0.5139000 |
0.5900000 |
0.6865000 |
36.44 |
69.07 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186081918 |
rs7555520 |
C |
T |
. |
PASS |
0.9690000 |
0.6715000 |
0.5913000 |
0.5129000 |
0.5900000 |
0.6861000 |
37.0 |
69.46 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186086578 |
rs10157742 |
G |
A |
. |
PASS |
0.9675000 |
0.6700000 |
0.5933000 |
0.5030000 |
0.5470000 |
0.6755000 |
35.5 |
69.5 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186089072 |
rs2891230 |
G |
A |
. |
PASS |
0.2496000 |
0.4942000 |
0.5079000 |
0.3082000 |
0.4039000 |
0.3774000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186089112 |
rs2383434 |
T |
C |
. |
PASS |
0.5772000 |
0.5130000 |
0.5159000 |
0.3171000 |
0.4151000 |
0.4720000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186092076 |
rs2057388 |
A |
C |
. |
PASS |
0.8850000 |
0.5663000 |
0.5724000 |
0.3559000 |
0.5153000 |
0.5994000 |
36.65 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186101539 |
rs10911825 |
A |
G |
. |
PASS |
0.6498000 |
0.4841000 |
0.5685000 |
0.2634000 |
0.4018000 |
0.4844000 |
36.57 |
70.0 |
71 |
911.40 |
9.86 |
39.44 |
0 |
39.44 |
0/1 |
| chr1 |
186113852 |
rs17531405 |
G |
C |
. |
PASS |
0.0076000 |
0.0994000 |
0.0149000 |
0.1869000 |
0.0583000 |
0.0677000 |
37.0 |
70.0 |
54 |
594.48 |
7.80 |
35.19 |
0 |
35.19 |
0/1 |
| chr1 |
186113931 |
rs3737941 |
T |
G |
. |
PASS |
0.5310000 |
0.4712000 |
0.5506000 |
0.2565000 |
0.3814000 |
0.4423000 |
37.0 |
70.0 |
18 |
368.67 |
10.10 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
186135236 |
rs6425021 |
G |
A |
. |
PASS |
0.5174000 |
0.2046000 |
0.0913000 |
0.3221000 |
0.2812000 |
0.3029000 |
37.0 |
70.0 |
10 |
146.29 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
186141301 |
rs4651302 |
G |
A |
. |
PASS |
0.9539000 |
0.6196000 |
0.5863000 |
0.4662000 |
0.5440000 |
0.6556000 |
36.43 |
70.0 |
21 |
829.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186143815 |
rs72707483 |
G |
A |
. |
PASS |
0.0000000 |
0.0072000 |
0.0000000 |
0.0179000 |
0.0031000 |
0.0051917 |
37.0 |
70.0 |
51 |
482.34 |
0.49 |
31.37 |
0 |
31.37 |
0/1 |
| chr1 |
186244372 |
rs1293996 |
A |
G |
. |
PASS |
0.4115000 |
0.5980000 |
0.5476000 |
0.5755000 |
0.6810000 |
0.5503000 |
37.0 |
70.0 |
20 |
241.50 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
186265948 |
rs1293987 |
T |
A |
. |
PASS |
0.7579000 |
0.5562000 |
0.9315000 |
0.5577000 |
0.7505000 |
0.7232000 |
35.67 |
70.0 |
16 |
279.14 |
13.89 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
186277088 |
rs68069719 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.35 |
68.3 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186313249 |
rs2950829 |
A |
G |
. |
PASS |
0.9735000 |
0.9135000 |
0.9692000 |
0.9881000 |
0.9939000 |
0.9712000 |
35.4 |
70.0 |
15 |
567.05 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186357523 |
rs1290390 |
T |
C |
. |
PASS |
0.9977000 |
0.9135000 |
0.9683000 |
0.9881000 |
0.9939000 |
0.9774000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186863385 |
rs2307193 |
TAA |
T |
. |
PASS |
0.5265000 |
0.5865000 |
0.3343000 |
0.3360000 |
0.4765000 |
0.4481000 |
36.41 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186919732 |
rs4650709 |
A |
T |
. |
PASS |
0.9977000 |
0.9755000 |
0.9970000 |
0.9483000 |
0.9826000 |
0.9816000 |
36.0 |
70.0 |
24 |
938.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186919993 |
rs969357 |
G |
A |
. |
PASS |
0.9977000 |
0.9755000 |
0.9970000 |
0.9483000 |
0.9826000 |
0.9816000 |
35.59 |
70.0 |
17 |
650.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186925168 |
rs5007825 |
A |
G |
. |
PASS |
0.9977000 |
0.9755000 |
0.9970000 |
0.9483000 |
0.9826000 |
0.9816000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186925194 |
rs5007824 |
T |
C |
. |
PASS |
0.9977000 |
0.9755000 |
0.9970000 |
0.9483000 |
0.9826000 |
0.9816000 |
37.0 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186925552 |
rs2307199 |
T |
C |
. |
PASS |
0.9977000 |
0.9755000 |
0.9970000 |
0.9483000 |
0.9826000 |
0.9816000 |
37.0 |
69.05 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
186946869 |
rs28395831 |
A |
G |
. |
PASS |
0.0015000 |
0.0014000 |
0.0000000 |
0.0189000 |
0.0112000 |
0.0065895 |
37.0 |
70.0 |
57 |
882.00 |
10.12 |
45.61 |
0 |
45.61 |
0/1 |
| chr1 |
186946912 |
rs2307198 |
G |
A |
. |
PASS |
0.9985000 |
0.9841000 |
0.9980000 |
0.9742000 |
0.9816000 |
0.9882000 |
36.04 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
187276553 |
rs1390496 |
A |
G |
. |
PASS |
0.8487000 |
0.7637000 |
0.8710000 |
0.7425000 |
0.7996000 |
0.8105000 |
35.0 |
70.0 |
23 |
136.92 |
20.29 |
26.09 |
0 |
26.09 |
0/1 |
| chr1 |
187532444 |
rs147554046,rs3062449 |
T |
TGTGGGCTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.9 |
69.9 |
20 |
784.34 |
4.21 |
95.00 |
0 |
100.00 |
1/1 |
| chr1 |
187532575 |
rs4651392 |
C |
T |
. |
PASS |
0.0688000 |
0.1643000 |
0.0010000 |
0.2684000 |
0.1329000 |
0.1210000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
187784824 |
rs6693349 |
G |
A |
. |
PASS |
0.4682000 |
0.4813000 |
0.4008000 |
0.4453000 |
0.5041000 |
0.4589000 |
36.08 |
70.0 |
46 |
891.08 |
6.69 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
188219894 |
rs35239313 |
ACT |
A |
. |
PASS |
0.6551000 |
0.4597000 |
0.4266000 |
0.3260000 |
0.3119000 |
0.4489000 |
35.67 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
188943636 |
rs66701550 |
G |
GT |
. |
PASS |
0.7852000 |
0.6455000 |
0.5992000 |
0.5616000 |
0.6299000 |
0.6532000 |
37.0 |
70.0 |
21 |
222.89 |
7.14 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
188943726 |
rs12047149 |
A |
G |
. |
PASS |
0.3616000 |
0.6138000 |
0.5228000 |
0.5785000 |
0.5297000 |
0.5054000 |
37.0 |
70.0 |
63 |
989.25 |
0.77 |
46.03 |
0 |
46.03 |
0/1 |
| chr1 |
189555729 |
rs1848826 |
A |
C |
. |
PASS |
0.5439000 |
0.4914000 |
0.4534000 |
0.5268000 |
0.4468000 |
0.4960000 |
36.73 |
70.0 |
87 |
1000.00 |
7.97 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
189555774 |
rs516084 |
C |
G |
. |
PASS |
0.5522000 |
0.4755000 |
0.4554000 |
0.5239000 |
0.4499000 |
0.4964000 |
36.5 |
70.0 |
150 |
1000.00 |
1.33 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
189911084 |
rs7516624 |
C |
T |
. |
PASS |
0.4221000 |
0.3934000 |
0.3760000 |
0.5427000 |
0.4131000 |
0.4313000 |
37.0 |
70.0 |
24 |
229.46 |
25.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
189958874 |
rs1730734 |
T |
C |
. |
PASS |
0.2088000 |
0.1931000 |
0.1835000 |
0.2704000 |
0.2382000 |
0.2196000 |
36.37 |
70.0 |
41 |
625.76 |
11.81 |
46.34 |
0 |
46.34 |
0/1 |
| chr1 |
190863011 |
rs12135498 |
G |
A |
. |
PASS |
0.0893000 |
0.0720000 |
0.2302000 |
0.1083000 |
0.1769000 |
0.1362000 |
37.0 |
70.0 |
17 |
334.07 |
10.59 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
191115638 |
rs10753974 |
C |
T |
. |
PASS |
0.6498000 |
0.6354000 |
0.6458000 |
0.6292000 |
0.5112000 |
0.6158000 |
37.0 |
69.89 |
39 |
602.00 |
23.08 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
191563157 |
rs6689623 |
C |
T |
. |
PASS |
0.4100000 |
0.5014000 |
0.6577000 |
0.5467000 |
0.4847000 |
0.5146000 |
35.86 |
69.05 |
53 |
661.16 |
10.42 |
39.62 |
0 |
39.62 |
0/1 |
| chr1 |
191863777 |
rs71938308,rs67717700 |
ATATCCACT |
A |
. |
PASS |
0.6694000 |
0.4135000 |
0.5833000 |
0.5686000 |
0.4223000 |
0.5481000 |
36.07 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
192082721 |
rs10921083 |
A |
G |
. |
PASS |
0.3018000 |
0.6398000 |
0.6260000 |
0.5885000 |
0.3783000 |
0.4864000 |
37.0 |
69.57 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
192216230 |
rs1175148 |
A |
G |
. |
PASS |
0.7610000 |
0.3775000 |
0.1627000 |
0.4483000 |
0.4888000 |
0.4714000 |
35.98 |
68.59 |
110 |
1000.00 |
3.07 |
52.73 |
0 |
53.64 |
0/1 |
| chr1 |
192216486 |
rs1175147 |
T |
C |
. |
PASS |
0.7610000 |
0.3775000 |
0.1627000 |
0.4483000 |
0.4888000 |
0.4714000 |
37.0 |
70.0 |
48 |
1000.00 |
5.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
192216818 |
rs1175145 |
G |
A |
. |
PASS |
0.7610000 |
0.3775000 |
0.1627000 |
0.4483000 |
0.4888000 |
0.4714000 |
36.54 |
69.92 |
47 |
900.08 |
6.38 |
55.32 |
0 |
55.32 |
0/1 |
| chr1 |
192216848 |
rs1175144 |
C |
G |
. |
PASS |
0.7610000 |
0.3775000 |
0.1627000 |
0.4483000 |
0.4888000 |
0.4714000 |
34.91 |
69.91 |
42 |
749.64 |
9.11 |
54.76 |
0 |
54.76 |
0/1 |
| chr1 |
192335271 |
rs59139714 |
C |
CTAAT |
. |
PASS |
0.6619000 |
0.3905000 |
0.1558000 |
0.5169000 |
0.4826000 |
0.4583000 |
36.25 |
70.0 |
23 |
193.87 |
2.17 |
34.78 |
0 |
34.78 |
0/1 |
| chr1 |
192545099 |
rs7535818 |
G |
A |
. |
PASS |
0.2882000 |
0.6513000 |
0.6419000 |
0.8091000 |
0.8793000 |
0.6298000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
192561545 |
rs2760512 |
A |
G |
. |
PASS |
0.6324000 |
0.3256000 |
0.3482000 |
0.3241000 |
0.5746000 |
0.4595000 |
35.11 |
70.0 |
52 |
568.62 |
2.43 |
36.54 |
0 |
36.54 |
0/1 |
| chr1 |
192780498 |
rs17647363 |
A |
G |
. |
PASS |
0.0098000 |
0.1196000 |
0.0575000 |
0.1809000 |
0.0665000 |
0.0801000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
192989594 |
rs72738589 |
G |
A |
. |
PASS |
0.0023000 |
0.0418000 |
0.0000000 |
0.0507000 |
0.0072000 |
0.0179710 |
37.0 |
70.0 |
12 |
140.26 |
3.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
193021022 |
rs12123970 |
T |
A |
. |
PASS |
0.0023000 |
0.0418000 |
0.0000000 |
0.0507000 |
0.0102000 |
0.0185700 |
37.0 |
70.0 |
16 |
500.00 |
3.57 |
87.50 |
0 |
87.50 |
0/1 |
| chr1 |
193051685 |
rs2275444 |
G |
A |
. |
PASS |
0.5242000 |
0.6614000 |
0.4435000 |
0.6849000 |
0.6994000 |
0.5935000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
193057971 |
rs10737620 |
T |
A |
. |
PASS |
0.5242000 |
0.6614000 |
0.4435000 |
0.6839000 |
0.6963000 |
0.5927000 |
36.4 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
193074371 |
rs10801175 |
A |
G |
. |
PASS |
0.7466000 |
0.6960000 |
0.4454000 |
0.6928000 |
0.8160000 |
0.6817000 |
36.78 |
69.63 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
193074651 |
rs10921310 |
T |
A |
. |
PASS |
0.7458000 |
0.6960000 |
0.4454000 |
0.6928000 |
0.8119000 |
0.6807000 |
36.53 |
68.68 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
193094375 |
rs4466634 |
T |
C |
. |
PASS |
0.5106000 |
0.6268000 |
0.4494000 |
0.6332000 |
0.7730000 |
0.5903000 |
35.08 |
70.0 |
57 |
792.19 |
2.81 |
43.86 |
0 |
43.86 |
0/1 |
| chr1 |
193104827 |
rs10921318 |
G |
A |
. |
PASS |
0.4622000 |
0.6182000 |
0.4484000 |
0.6332000 |
0.7730000 |
0.5761000 |
37.0 |
70.0 |
13 |
262.57 |
9.62 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
193150219 |
rs28930674 |
A |
G |
. |
PASS |
0.0378000 |
0.0476000 |
0.0000000 |
0.0507000 |
0.0102000 |
0.0288000 |
37.0 |
70.0 |
61 |
1000.00 |
1.64 |
59.02 |
0 |
59.02 |
0/1 |
| chr1 |
193173028 |
rs72740231 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
35.86 |
70.0 |
36 |
712.34 |
0.79 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
193181434 |
rs41302543 |
C |
T |
. |
PASS |
0.0008000 |
0.0360000 |
0.0000000 |
0.0189000 |
0.0020000 |
0.0093850 |
37.0 |
70.0 |
13 |
179.03 |
74.36 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
193438775 |
rs34936308 |
GA |
G |
. |
PASS |
0.3253000 |
0.3646000 |
0.5030000 |
0.5129000 |
0.6789000 |
0.4732000 |
35.25 |
70.0 |
87 |
1000.00 |
5.34 |
45.98 |
0 |
45.98 |
0/1 |
| chr1 |
194158916 |
rs1982793 |
A |
G |
. |
PASS |
0.6967000 |
0.8818000 |
0.9980000 |
0.8797000 |
0.9151000 |
0.8624000 |
36.59 |
69.66 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
194294602 |
rs147722143 |
G |
GCACACA |
. |
PASS |
0.2610000 |
0.5591000 |
0.6786000 |
0.6153000 |
0.5429000 |
0.5126000 |
36.43 |
70.0 |
73 |
1000.00 |
6.85 |
76.71 |
0 |
93.15 |
1/1 |
| chr1 |
194482268 |
rs72735062 |
C |
T |
. |
PASS |
0.0008000 |
0.0101000 |
0.0000000 |
0.0169000 |
0.0000000 |
0.0049920 |
35.8 |
70.0 |
42 |
625.75 |
6.27 |
45.24 |
0 |
47.62 |
0/1 |
| chr1 |
194482304 |
rs2494129 |
C |
T |
. |
PASS |
0.5000000 |
0.5504000 |
0.6905000 |
0.6481000 |
0.3681000 |
0.5493000 |
36.33 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
195218258 |
rs1999129 |
T |
C |
. |
PASS |
0.1127000 |
0.2277000 |
0.2024000 |
0.2058000 |
0.2434000 |
0.1909000 |
37.0 |
70.0 |
13 |
220.79 |
4.40 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
195568569 |
rs3904256 |
A |
T |
. |
PASS |
0.4879000 |
0.5159000 |
0.5744000 |
0.5507000 |
0.6237000 |
0.5483000 |
35.67 |
70.0 |
37 |
579.86 |
14.11 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
196090171 |
. |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
70.0 |
11 |
294.79 |
12.12 |
81.82 |
1 |
81.82 |
0/1 |
| chr1 |
196090171 |
. |
TACACAC |
TACAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
12 |
208.24 |
50.00 |
16.67 |
1 |
75.00 |
0/1 |
| chr1 |
196090171 |
rs67883815,rs149686383 |
TACACAC |
T |
. |
PASS |
0.1634000 |
0.2565000 |
0.2153000 |
0.1252000 |
0.2689000 |
0.1989000 |
36.14 |
70.0 |
12 |
208.24 |
7.14 |
58.33 |
1 |
75.00 |
0/1 |
| chr1 |
196090172 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
70.0 |
11 |
294.79 |
12.12 |
81.82 |
1 |
81.82 |
0/1 |
| chr1 |
196090268 |
rs56929451 |
TA |
T |
. |
PASS |
0.3132000 |
0.4669000 |
0.4315000 |
0.3549000 |
0.5971000 |
0.4221000 |
36.18 |
70.0 |
45 |
1000.00 |
0.00 |
66.67 |
0 |
100.00 |
0/1 |
| chr1 |
196090269 |
rs10801514 |
A |
T |
. |
PASS |
0.8472000 |
0.9726000 |
0.9861000 |
0.9861000 |
0.9550000 |
0.9415000 |
36.18 |
70.0 |
45 |
1000.00 |
0.00 |
33.33 |
0 |
100.00 |
0/1 |
| chr1 |
196227526 |
rs977157 |
A |
G |
. |
PASS |
0.9561000 |
0.9914000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9872000 |
36.81 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196251522 |
rs2477357 |
T |
C |
. |
PASS |
0.3079000 |
0.8329000 |
0.9514000 |
0.8211000 |
0.8333000 |
0.7159000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196254970 |
rs2477360 |
C |
T |
. |
PASS |
0.9788000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9938000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196398619 |
rs1538684 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
140.26 |
33.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
196398974 |
rs12121250 |
T |
A |
. |
PASS |
0.1974000 |
0.5202000 |
0.6448000 |
0.5915000 |
0.6033000 |
0.4906000 |
37.0 |
70.0 |
12 |
177.88 |
16.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
196438244 |
rs61820754 |
C |
G |
. |
PASS |
0.0015000 |
0.0159000 |
0.0010000 |
0.0239000 |
0.0092000 |
0.0093850 |
36.2 |
70.0 |
26 |
499.67 |
26.15 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
196461513 |
rs4607811 |
C |
T |
. |
PASS |
0.9410000 |
0.9914000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9832000 |
36.08 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196642072 |
rs551397 |
C |
T |
. |
PASS |
0.7912000 |
0.4193000 |
0.4067000 |
0.2604000 |
0.3425000 |
0.4681000 |
37.0 |
70.0 |
13 |
179.03 |
28.21 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
196642233 |
rs800292 |
G |
A |
. |
PASS |
0.7912000 |
0.4193000 |
0.4067000 |
0.2604000 |
0.3425000 |
0.4681000 |
35.59 |
70.0 |
44 |
521.17 |
13.10 |
38.64 |
0 |
38.64 |
0/1 |
| chr1 |
196642969 |
rs35507625,rs55714531 |
C |
CTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
32 |
366.62 |
14.58 |
37.50 |
0 |
40.62 |
0/1 |
| chr1 |
196654324 |
rs1061147 |
A |
C |
. |
PASS |
0.5688000 |
0.7565000 |
0.9504000 |
0.6382000 |
0.7096000 |
0.7131000 |
36.63 |
69.38 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196658497 |
rs482934 |
G |
T |
. |
PASS |
0.8147000 |
0.7752000 |
0.9514000 |
0.6402000 |
0.7117000 |
0.7815000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196659237 |
rs1061170 |
C |
T |
. |
PASS |
0.6377000 |
0.7666000 |
0.9514000 |
0.6382000 |
0.7127000 |
0.7334000 |
36.39 |
69.33 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196682346 |
rs7535263 |
G |
A |
. |
PASS |
0.5620000 |
0.5504000 |
0.4246000 |
0.4235000 |
0.5593000 |
0.5044000 |
37.0 |
69.25 |
48 |
658.46 |
5.83 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
196682947 |
rs2274700 |
G |
A |
. |
PASS |
0.4735000 |
0.5389000 |
0.4246000 |
0.4235000 |
0.5573000 |
0.4790000 |
37.0 |
70.0 |
72 |
1000.00 |
3.10 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
196705926 |
rs375046 |
C |
A |
. |
PASS |
0.8290000 |
0.7594000 |
0.9405000 |
0.6034000 |
0.7178000 |
0.7748000 |
37.0 |
70.0 |
24 |
308.84 |
16.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
196712517 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.75 |
17 |
73.88 |
11.76 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
196712522 |
rs61822180 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.75 |
18 |
80.44 |
11.11 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
196712577 |
rs513699 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
64.18 |
74 |
442.89 |
22.26 |
22.97 |
0 |
22.97 |
0/1 |
| chr1 |
196712586 |
rs61822181 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
64.88 |
85 |
702.17 |
13.33 |
28.24 |
0 |
28.24 |
0/1 |
| chr1 |
196757392 |
rs400344 |
C |
T |
. |
PASS |
0.6460000 |
0.6657000 |
0.9484000 |
0.5010000 |
0.4867000 |
0.6494000 |
37.0 |
64.41 |
64 |
485.00 |
19.30 |
26.56 |
0 |
26.56 |
0/1 |
| chr1 |
196794909 |
rs409549 |
G |
C |
. |
PASS |
0.5023000 |
0.5101000 |
0.5427000 |
0.4433000 |
0.3640000 |
0.4726000 |
35.8 |
65.9 |
17 |
317.90 |
8.24 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
196796184 |
rs399507 |
G |
A |
. |
PASS |
0.5023000 |
0.5101000 |
0.5446000 |
0.4433000 |
0.3661000 |
0.4734000 |
35.86 |
70.0 |
39 |
703.30 |
5.13 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
196796240 |
rs438781 |
T |
A |
. |
PASS |
0.5893000 |
0.5130000 |
0.5446000 |
0.4443000 |
0.3661000 |
0.4970000 |
37.0 |
70.0 |
16 |
332.93 |
7.50 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
196797123 |
rs677961 |
C |
T |
. |
PASS |
0.5030000 |
0.5101000 |
0.5446000 |
0.4433000 |
0.3671000 |
0.4738000 |
37.0 |
56.83 |
11 |
185.04 |
15.15 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
196797238 |
rs425757 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
56.4 |
61 |
201.62 |
41.64 |
16.39 |
0 |
16.39 |
0/1 |
| chr1 |
196797244 |
rs113811987 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.5 |
64 |
104.90 |
50.00 |
12.50 |
0 |
12.50 |
0/1 |
| chr1 |
196801042 |
rs4230 |
G |
T |
. |
PASS |
0.6157000 |
0.5187000 |
0.5437000 |
0.4463000 |
0.3783000 |
0.5074000 |
36.14 |
68.79 |
106 |
1000.00 |
0.99 |
39.62 |
0 |
39.62 |
0/1 |
| chr1 |
196801078 |
rs414628 |
A |
T |
. |
PASS |
0.3260000 |
0.5072000 |
0.5228000 |
0.4433000 |
0.3742000 |
0.4237000 |
37.0 |
68.54 |
84 |
1000.00 |
6.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
196801190 |
rs390679 |
C |
A |
. |
PASS |
0.3253000 |
0.5072000 |
0.5228000 |
0.4433000 |
0.3742000 |
0.4235000 |
37.0 |
69.82 |
27 |
341.58 |
4.71 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
196874356 |
rs10801578 |
G |
T |
. |
PASS |
0.9796000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9944000 |
36.41 |
69.12 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196876458 |
rs7417769 |
A |
G |
. |
PASS |
0.2095000 |
0.7305000 |
0.8304000 |
0.6839000 |
0.6554000 |
0.5891000 |
35.55 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
196920148 |
rs4085749 |
C |
T |
. |
PASS |
0.0272000 |
0.4640000 |
0.7024000 |
0.2505000 |
0.3160000 |
0.3249000 |
36.41 |
70.0 |
90 |
1000.00 |
21.46 |
45.56 |
0 |
45.56 |
0/1 |
| chr1 |
196967458 |
rs1332664 |
G |
T |
. |
PASS |
0.0507000 |
0.4265000 |
0.6667000 |
0.1750000 |
0.3292000 |
0.3061000 |
36.33 |
70.0 |
25 |
627.99 |
5.78 |
72.00 |
0 |
72.00 |
0/1 |
| chr1 |
197008365 |
rs698859 |
C |
T |
. |
PASS |
0.0870000 |
0.2291000 |
0.1706000 |
0.4135000 |
0.2883000 |
0.2284000 |
37.0 |
70.0 |
12 |
307.34 |
0.00 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
197008597 |
rs5990 |
A |
C |
. |
PASS |
0.1921000 |
0.6455000 |
0.8194000 |
0.5010000 |
0.6104000 |
0.5250000 |
37.0 |
70.0 |
26 |
511.68 |
2.56 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
197009798 |
rs5998 |
A |
G |
. |
PASS |
0.1921000 |
0.6455000 |
0.8194000 |
0.5010000 |
0.6104000 |
0.5250000 |
36.25 |
68.75 |
54 |
1000.00 |
9.72 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
197026672 |
rs1759009 |
A |
G |
. |
PASS |
0.6868000 |
0.9063000 |
1.0000000 |
0.9145000 |
0.9029000 |
0.8682000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197029644 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
46 |
79.72 |
15.94 |
13.04 |
0 |
13.04 |
0/1 |
| chr1 |
197030201 |
rs5997 |
T |
C |
. |
PASS |
0.3820000 |
0.8804000 |
1.0000000 |
0.9125000 |
0.9029000 |
0.7837000 |
35.8 |
70.0 |
20 |
775.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197031021 |
rs6003 |
C |
T |
. |
PASS |
0.3162000 |
0.8790000 |
0.9831000 |
0.9115000 |
0.8988000 |
0.7618000 |
36.28 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197053373 |
rs12677 |
G |
A |
. |
PASS |
0.3782000 |
0.8804000 |
1.0000000 |
0.9125000 |
0.9008000 |
0.7823000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197055925 |
rs10754213 |
T |
C |
. |
PASS |
0.3790000 |
0.8804000 |
1.0000000 |
0.9135000 |
0.9008000 |
0.7827000 |
36.69 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197059864 |
rs72736482 |
C |
T |
. |
PASS |
0.0061000 |
0.0692000 |
0.0010000 |
0.1034000 |
0.0603000 |
0.0439000 |
37.0 |
70.0 |
11 |
143.27 |
0.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
197059878 |
rs4915315 |
G |
A |
. |
PASS |
0.3419000 |
0.8761000 |
0.9831000 |
0.9135000 |
0.9008000 |
0.7690000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197059892 |
rs10754214 |
A |
G |
. |
PASS |
0.2988000 |
0.8746000 |
0.9831000 |
0.9125000 |
0.9008000 |
0.7572000 |
35.0 |
70.0 |
12 |
441.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197059928 |
rs4915316 |
A |
G |
. |
PASS |
0.2958000 |
0.8746000 |
0.9831000 |
0.9125000 |
0.9008000 |
0.7564000 |
36.29 |
70.0 |
17 |
662.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197063352 |
rs41304071 |
C |
T |
. |
PASS |
0.0431000 |
0.2277000 |
0.1637000 |
0.4105000 |
0.2863000 |
0.2143000 |
37.0 |
70.0 |
27 |
554.59 |
4.17 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
197070442 |
rs3762271 |
G |
T |
. |
PASS |
0.0431000 |
0.2277000 |
0.1637000 |
0.4105000 |
0.2863000 |
0.2143000 |
36.43 |
70.0 |
50 |
678.06 |
4.76 |
42.00 |
0 |
42.00 |
0/1 |
| chr1 |
197070697 |
rs41310927 |
T |
C |
. |
PASS |
0.0431000 |
0.2277000 |
0.1637000 |
0.4105000 |
0.2863000 |
0.2143000 |
35.97 |
70.0 |
70 |
1000.00 |
2.86 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
197070707 |
rs41308365 |
G |
A |
. |
PASS |
0.0431000 |
0.2277000 |
0.1637000 |
0.4105000 |
0.2863000 |
0.2143000 |
36.67 |
69.44 |
73 |
1000.00 |
7.08 |
49.32 |
0 |
49.32 |
0/1 |
| chr1 |
197070776 |
rs10922162 |
C |
T |
. |
PASS |
0.0159000 |
0.4280000 |
0.6696000 |
0.1720000 |
0.3180000 |
0.2949000 |
37.0 |
70.0 |
57 |
589.60 |
14.04 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
197070815 |
rs1412640 |
T |
C |
. |
PASS |
0.4970000 |
0.8934000 |
1.0000000 |
0.9125000 |
0.9029000 |
0.8159000 |
36.08 |
69.62 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197070901 |
rs964201 |
A |
G |
. |
PASS |
1.0000000 |
0.9942000 |
1.0000000 |
0.9950000 |
0.9959000 |
0.9974000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197072420 |
rs41310925 |
T |
C |
. |
PASS |
0.0386000 |
0.2262000 |
0.1637000 |
0.4115000 |
0.2863000 |
0.2131000 |
37.0 |
70.0 |
58 |
962.53 |
4.19 |
48.28 |
0 |
48.28 |
0/1 |
| chr1 |
197073932 |
rs2878749 |
T |
C |
. |
PASS |
0.0431000 |
0.2262000 |
0.1647000 |
0.4115000 |
0.2863000 |
0.2145000 |
36.45 |
70.0 |
37 |
763.10 |
8.11 |
59.46 |
0 |
59.46 |
0/1 |
| chr1 |
197091537 |
rs4915337 |
A |
T |
. |
PASS |
0.3790000 |
0.8804000 |
1.0000000 |
0.9125000 |
0.9008000 |
0.7825000 |
37.0 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197091808 |
rs61819088 |
T |
C |
. |
PASS |
0.0386000 |
0.2248000 |
0.1637000 |
0.4115000 |
0.2863000 |
0.2129000 |
37.0 |
70.0 |
13 |
53.71 |
0.00 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
197102745 |
rs4915344 |
A |
G |
. |
PASS |
0.0265000 |
0.4280000 |
0.6706000 |
0.1720000 |
0.3272000 |
0.2997000 |
36.14 |
70.0 |
23 |
471.08 |
16.15 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
197104149 |
rs35659894 |
TA |
T |
. |
PASS |
0.2950000 |
0.8746000 |
0.9831000 |
0.9115000 |
0.9008000 |
0.7560000 |
36.54 |
70.0 |
13 |
491.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197108427 |
rs1332662 |
A |
G |
. |
PASS |
0.3389000 |
0.8761000 |
1.0000000 |
0.9125000 |
0.9008000 |
0.7714000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197109042 |
rs1332663 |
C |
T |
. |
PASS |
0.3790000 |
0.8804000 |
1.0000000 |
0.9125000 |
0.9008000 |
0.7825000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197112533 |
rs6677082 |
G |
A |
. |
PASS |
0.2950000 |
0.8746000 |
0.9831000 |
0.9095000 |
0.9008000 |
0.7556000 |
36.67 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197113073 |
rs1571964 |
G |
A |
. |
PASS |
0.2950000 |
0.8746000 |
0.9831000 |
0.9095000 |
0.9008000 |
0.7556000 |
37.0 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197128726 |
rs12128631 |
G |
A |
. |
PASS |
0.0265000 |
0.4251000 |
0.6716000 |
0.1700000 |
0.3200000 |
0.2977000 |
36.5 |
70.0 |
54 |
795.47 |
0.00 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
197141243 |
rs6428389 |
A |
C |
. |
PASS |
0.2632000 |
0.8069000 |
0.8879000 |
0.8459000 |
0.8303000 |
0.6921000 |
35.4 |
70.0 |
17 |
514.75 |
0.78 |
88.24 |
0 |
88.24 |
0/1 |
| chr1 |
197147471 |
rs61819118 |
A |
C |
. |
PASS |
0.0424000 |
0.2277000 |
0.1627000 |
0.4105000 |
0.2883000 |
0.2143000 |
35.8 |
70.0 |
31 |
681.46 |
4.84 |
64.52 |
0 |
64.52 |
0/1 |
| chr1 |
197163747 |
. |
AG |
AGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
14 |
92.47 |
42.86 |
42.86 |
1 |
92.86 |
0/1 |
| chr1 |
197163748 |
rs372582082 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
92.47 |
107.14 |
28.57 |
1 |
28.57 |
0/1 |
| chr1 |
197297540 |
rs12042179 |
A |
T |
. |
PASS |
0.0378000 |
0.5461000 |
0.7599000 |
0.4235000 |
0.4070000 |
0.4032000 |
36.4 |
70.0 |
32 |
690.46 |
1.25 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
197316435 |
rs1337167 |
T |
C |
. |
PASS |
0.9244000 |
0.7968000 |
0.7649000 |
0.7714000 |
0.9008000 |
0.8393000 |
37.0 |
70.0 |
27 |
136.89 |
59.26 |
22.22 |
0 |
22.22 |
0/1 |
| chr1 |
197325908 |
rs2786098 |
T |
G |
. |
PASS |
0.9251000 |
0.8055000 |
0.7649000 |
0.7783000 |
0.9039000 |
0.8427000 |
35.67 |
70.0 |
17 |
276.13 |
2.61 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
197390368 |
rs3902057 |
A |
G |
. |
PASS |
0.7065000 |
0.9813000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9197000 |
36.83 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197398086 |
rs7534863 |
A |
G |
. |
PASS |
0.1952000 |
0.4452000 |
0.3363000 |
0.5139000 |
0.3804000 |
0.3584000 |
37.0 |
70.0 |
26 |
432.29 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
197404770 |
rs72740568 |
G |
T |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0030000 |
0.0010000 |
0.0011981 |
37.0 |
70.0 |
30 |
708.49 |
3.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
197407886 |
rs5779871 |
A |
AT |
. |
PASS |
0.0401000 |
0.2032000 |
0.1181000 |
0.2266000 |
0.1421000 |
0.1358000 |
37.0 |
70.0 |
18 |
148.38 |
11.11 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
197482167 |
rs2013617 |
C |
G |
. |
PASS |
0.8026000 |
0.9841000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9455000 |
37.0 |
70.0 |
19 |
754.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197510025 |
rs3902061 |
G |
T |
. |
PASS |
0.8245000 |
0.9856000 |
0.9911000 |
0.9990000 |
1.0000000 |
0.9497000 |
35.74 |
70.0 |
19 |
729.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197515777 |
rs4316386 |
A |
T |
. |
PASS |
0.7519000 |
0.7752000 |
0.8720000 |
0.7922000 |
0.8558000 |
0.8077000 |
37.0 |
70.0 |
22 |
356.63 |
9.09 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
197546093 |
rs1998711 |
A |
T |
. |
PASS |
0.3116000 |
0.5620000 |
0.6498000 |
0.5825000 |
0.6166000 |
0.5284000 |
35.74 |
70.0 |
43 |
603.57 |
5.14 |
44.19 |
0 |
44.19 |
0/1 |
| chr1 |
197576307 |
rs11411505 |
A |
AT |
. |
PASS |
0.9251000 |
0.9914000 |
1.0000000 |
0.9950000 |
1.0000000 |
0.9780000 |
36.68 |
70.0 |
36 |
1000.00 |
2.54 |
97.22 |
0 |
97.22 |
1/1 |
| chr1 |
197741951 |
rs2477067 |
C |
A |
. |
PASS |
1.0000000 |
0.9928000 |
1.0000000 |
0.9950000 |
0.9959000 |
0.9972000 |
37.0 |
70.0 |
43 |
1000.00 |
0.79 |
95.35 |
0 |
95.35 |
1/1 |
| chr1 |
197890422 |
rs12122995 |
C |
G |
. |
PASS |
0.7829000 |
0.9741000 |
1.0000000 |
0.9632000 |
0.9908000 |
0.9299000 |
36.52 |
69.2 |
25 |
992.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
197896728 |
rs12046958 |
T |
C |
. |
PASS |
0.1959000 |
0.3545000 |
0.4067000 |
0.1859000 |
0.2454000 |
0.2680000 |
37.0 |
70.0 |
34 |
700.60 |
11.18 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
198095633 |
rs35168123 |
C |
CA |
. |
PASS |
0.5454000 |
0.4395000 |
0.3115000 |
0.6581000 |
0.3967000 |
0.4772000 |
37.0 |
70.0 |
52 |
797.91 |
20.63 |
42.31 |
0 |
46.15 |
0/1 |
| chr1 |
198167287 |
rs12240144 |
T |
C |
. |
PASS |
0.2405000 |
0.1556000 |
0.2500000 |
0.1630000 |
0.1462000 |
0.1967000 |
36.08 |
69.85 |
22 |
432.32 |
10.49 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
198201907 |
rs3084926,rs5779913 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
342.85 |
0.00 |
90.91 |
0 |
90.91 |
0/1 |
| chr1 |
198288709 |
rs6679100 |
A |
G |
. |
PASS |
0.7640000 |
0.6599000 |
0.8988000 |
0.3777000 |
0.7382000 |
0.6941000 |
37.0 |
70.0 |
24 |
967.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
198498325 |
. |
A |
AAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
15 |
180.17 |
30.00 |
26.67 |
0 |
46.67 |
0/1 |
| chr1 |
198679093 |
rs10753834 |
G |
A |
. |
PASS |
0.6732000 |
0.4741000 |
0.3661000 |
0.3032000 |
0.3865000 |
0.4535000 |
37.0 |
70.0 |
12 |
182.04 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
198918502 |
rs4915331 |
T |
C |
. |
PASS |
0.7216000 |
0.8228000 |
0.9325000 |
0.7823000 |
0.8487000 |
0.8151000 |
36.27 |
69.03 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
198918524 |
rs4915332 |
A |
G |
. |
PASS |
0.7663000 |
0.8228000 |
0.9325000 |
0.7833000 |
0.8487000 |
0.8271000 |
36.54 |
69.62 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
199213309 |
rs1536093 |
C |
T |
. |
PASS |
0.5794000 |
0.6542000 |
0.4375000 |
0.6203000 |
0.5920000 |
0.5719000 |
37.0 |
70.0 |
18 |
372.83 |
1.01 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
199213358 |
rs1536094 |
C |
T |
. |
PASS |
0.5794000 |
0.6542000 |
0.4375000 |
0.6183000 |
0.5920000 |
0.5715000 |
34.47 |
70.0 |
48 |
568.66 |
11.84 |
39.58 |
0 |
39.58 |
0/1 |
| chr1 |
199357243 |
rs502360 |
A |
G |
. |
PASS |
0.4433000 |
0.5620000 |
0.2986000 |
0.4046000 |
0.4029000 |
0.4149000 |
35.15 |
69.85 |
28 |
402.25 |
0.55 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
199537638 |
rs34610390 |
G |
GAAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
70.0 |
46 |
1000.00 |
38.13 |
28.26 |
0 |
95.65 |
0/1 |
| chr1 |
199537638 |
. |
G |
GAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
70.0 |
46 |
1000.00 |
2.90 |
45.65 |
0 |
95.65 |
0/1 |
| chr1 |
199885509 |
rs4915395 |
G |
A |
. |
PASS |
0.5439000 |
0.5951000 |
0.6458000 |
0.4930000 |
0.6411000 |
0.5803000 |
37.0 |
70.0 |
10 |
62.75 |
33.33 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
200014762 |
rs2817008 |
A |
G |
. |
PASS |
0.7738000 |
0.2752000 |
0.0635000 |
0.3290000 |
0.2106000 |
0.3624000 |
37.0 |
70.0 |
24 |
104.14 |
13.33 |
20.83 |
0 |
20.83 |
0/1 |
| chr1 |
200014766 |
rs2363454 |
G |
T |
. |
PASS |
0.2610000 |
0.1066000 |
0.0238000 |
0.1501000 |
0.0798000 |
0.1342000 |
37.0 |
70.0 |
22 |
106.02 |
16.36 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
200117310 |
rs2816964 |
C |
T |
. |
PASS |
0.9834000 |
0.9813000 |
0.9405000 |
0.9433000 |
0.8783000 |
0.9459000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200143281 |
rs1060060 |
C |
T |
. |
PASS |
0.3669000 |
0.3213000 |
0.5179000 |
0.2913000 |
0.2577000 |
0.3544000 |
36.7 |
70.0 |
72 |
1000.00 |
0.56 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
200182703 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
220.26 |
0.00 |
70.00 |
1 |
70.00 |
0/1 |
| chr1 |
200182703 |
. |
GGAGGACGCCGGAGAGGAGGCCGGA |
GGAGGACGCCGGAGAGGACGCCAGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.5 |
70.0 |
11 |
208.22 |
0.00 |
36.36 |
1 |
100.00 |
0/1 |
| chr1 |
200182703 |
rs369891064,rs141962771 |
GGAGGACGCCGGAGAGGAGGCCGGA |
G |
. |
PASS |
0.2050000 |
0.1110000 |
0.0595000 |
0.0497000 |
0.2106000 |
0.1326000 |
37.0 |
70.0 |
11 |
208.22 |
0.00 |
63.64 |
1 |
100.00 |
0/1 |
| chr1 |
200182704 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182705 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182706 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182707 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182708 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182709 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182710 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182711 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182712 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
217.25 |
0.00 |
63.64 |
1 |
63.64 |
0/1 |
| chr1 |
200182713 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
214.24 |
0.00 |
58.33 |
1 |
58.33 |
0/1 |
| chr1 |
200182714 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
214.24 |
0.00 |
58.33 |
1 |
58.33 |
0/1 |
| chr1 |
200182715 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
211.23 |
0.00 |
53.85 |
1 |
53.85 |
0/1 |
| chr1 |
200182716 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
211.23 |
0.00 |
53.85 |
1 |
53.85 |
0/1 |
| chr1 |
200182717 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
211.23 |
0.00 |
53.85 |
1 |
53.85 |
0/1 |
| chr1 |
200182718 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
211.23 |
0.00 |
53.85 |
1 |
53.85 |
0/1 |
| chr1 |
200182719 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
208.22 |
0.00 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
200182720 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
463.98 |
0.00 |
50.00 |
1 |
100.00 |
0/1 |
| chr1 |
200182721 |
rs61826220 |
G |
C |
. |
PASS |
0.6278000 |
0.5778000 |
0.6687000 |
0.3459000 |
0.5348000 |
0.5543000 |
37.0 |
70.0 |
14 |
463.98 |
0.00 |
50.00 |
1 |
100.00 |
0/1 |
| chr1 |
200182721 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
208.22 |
0.00 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
200182722 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
208.22 |
0.00 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
200182723 |
. |
CC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
208.22 |
0.00 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
200182724 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
468.13 |
0.00 |
50.00 |
1 |
100.00 |
0/1 |
| chr1 |
200182725 |
rs76632737 |
G |
A |
. |
PASS |
0.5514000 |
0.4164000 |
0.4444000 |
0.2853000 |
0.4990000 |
0.4475000 |
37.0 |
70.0 |
14 |
468.13 |
0.00 |
50.00 |
1 |
100.00 |
0/1 |
| chr1 |
200182725 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
208.22 |
0.00 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
200182726 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
208.22 |
0.00 |
50.00 |
1 |
50.00 |
0/1 |
| chr1 |
200182731 |
. |
GAC |
GGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
217.78 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
200182834 |
rs12028402 |
A |
G |
. |
PASS |
0.7549000 |
0.5850000 |
0.8462000 |
0.3459000 |
0.6022000 |
0.6378000 |
36.68 |
69.54 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200183398 |
rs10919847 |
C |
A |
. |
PASS |
0.8525000 |
0.5965000 |
0.8452000 |
0.3439000 |
0.5992000 |
0.6639000 |
36.53 |
69.16 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200183460 |
rs10919848 |
C |
T |
. |
PASS |
0.5658000 |
0.5447000 |
0.6667000 |
0.3121000 |
0.5266000 |
0.5246000 |
36.61 |
67.42 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200202231 |
rs10753873 |
A |
T |
. |
PASS |
0.4410000 |
0.5735000 |
0.5188000 |
0.5875000 |
0.6636000 |
0.5479000 |
36.4 |
69.67 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200376695 |
rs35342093 |
C |
T |
. |
PASS |
0.0038000 |
0.0288000 |
0.0000000 |
0.0447000 |
0.0112000 |
0.0161740 |
35.84 |
69.85 |
135 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200522566 |
rs12120084 |
G |
C |
. |
PASS |
0.0424000 |
0.2017000 |
0.2302000 |
0.3917000 |
0.2843000 |
0.2196000 |
36.35 |
70.0 |
66 |
1000.00 |
0.98 |
56.06 |
0 |
56.06 |
0/1 |
| chr1 |
200534248 |
rs7543730 |
C |
T |
. |
PASS |
0.4077000 |
0.5461000 |
0.6895000 |
0.5765000 |
0.6431000 |
0.5635000 |
36.38 |
70.0 |
92 |
1000.00 |
6.30 |
42.39 |
0 |
42.39 |
0/1 |
| chr1 |
200544650 |
rs35571944 |
TAC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.44 |
70.0 |
33 |
427.44 |
10.23 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
200558363 |
rs6665951 |
T |
C |
. |
PASS |
0.9032000 |
0.6700000 |
0.6875000 |
0.7475000 |
0.7515000 |
0.7666000 |
35.4 |
70.0 |
52 |
1000.00 |
12.31 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
200563706 |
rs4623737 |
C |
A |
. |
PASS |
0.5182000 |
0.5432000 |
0.6885000 |
0.5755000 |
0.6462000 |
0.5571000 |
37.0 |
70.0 |
49 |
943.69 |
2.42 |
55.10 |
0 |
55.10 |
0/1 |
| chr1 |
200567596 |
rs2809358 |
T |
G |
. |
PASS |
0.3442000 |
0.3213000 |
0.1825000 |
0.3519000 |
0.2342000 |
0.2885000 |
37.0 |
70.0 |
24 |
225.31 |
41.67 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
200574959 |
rs2808238 |
T |
C |
. |
PASS |
0.3464000 |
0.3199000 |
0.1825000 |
0.3519000 |
0.2342000 |
0.2889000 |
37.0 |
70.0 |
25 |
435.30 |
4.31 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
200575744 |
rs10577607,rs59704195 |
CTAAA |
C |
. |
PASS |
0.3442000 |
0.3199000 |
0.1825000 |
0.3519000 |
0.2342000 |
0.2883000 |
35.29 |
70.0 |
11 |
205.24 |
0.00 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
200575794 |
rs2794410 |
A |
G |
. |
PASS |
0.3442000 |
0.3199000 |
0.1825000 |
0.3519000 |
0.2342000 |
0.2883000 |
37.0 |
70.0 |
21 |
447.33 |
8.79 |
61.90 |
0 |
61.90 |
0/1 |
| chr1 |
200578093 |
rs2794409 |
G |
A |
. |
PASS |
0.9130000 |
0.8948000 |
0.8710000 |
0.9662000 |
0.9100000 |
0.9121000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200583380 |
rs2808241 |
T |
G |
. |
PASS |
0.4924000 |
0.3285000 |
0.1825000 |
0.3529000 |
0.2342000 |
0.3289000 |
37.0 |
70.0 |
39 |
263.70 |
12.31 |
25.64 |
0 |
25.64 |
0/1 |
| chr1 |
200617533 |
rs17416794 |
G |
T |
. |
PASS |
0.0061000 |
0.0735000 |
0.0000000 |
0.1431000 |
0.0225000 |
0.0449000 |
36.14 |
70.0 |
35 |
430.81 |
34.29 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
200618238 |
rs6665604 |
T |
C |
. |
PASS |
0.9092000 |
0.9654000 |
1.0000000 |
0.9543000 |
0.9765000 |
0.9575000 |
36.44 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200619478 |
rs2808230 |
C |
A |
. |
PASS |
0.9448000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9850000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200619530 |
rs2809365 |
T |
C |
. |
PASS |
0.9092000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9756000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200816519 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
53.18 |
20.00 |
30.00 |
1 |
30.00 |
0/1 |
| chr1 |
200816519 |
rs374164964,rs71138304,rs72312755 |
TTG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
53.18 |
36.36 |
27.27 |
1 |
100.00 |
0/1 |
| chr1 |
200816520 |
. |
TG |
T |
. |
PASS |
0.1573000 |
0.1311000 |
0.1915000 |
0.1262000 |
0.1104000 |
0.1452000 |
37.0 |
70.0 |
10 |
308.94 |
20.00 |
40.00 |
1 |
100.00 |
0/1 |
| chr1 |
200816521 |
rs2172666 |
G |
T |
. |
PASS |
0.6853000 |
0.7767000 |
0.7431000 |
0.7724000 |
0.6943000 |
0.7288000 |
37.0 |
70.0 |
10 |
308.94 |
13.33 |
60.00 |
1 |
100.00 |
0/1 |
| chr1 |
200824108 |
rs2275193 |
C |
T |
. |
PASS |
0.2103000 |
0.1354000 |
0.1815000 |
0.1262000 |
0.1115000 |
0.1579000 |
37.0 |
70.0 |
27 |
345.73 |
6.06 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
200826395 |
rs2292095 |
A |
T |
. |
PASS |
0.1967000 |
0.1311000 |
0.1815000 |
0.1262000 |
0.1115000 |
0.1538000 |
37.0 |
70.0 |
15 |
335.93 |
20.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
200833217 |
rs7526103 |
T |
C |
. |
PASS |
0.1967000 |
0.1311000 |
0.1835000 |
0.1262000 |
0.1115000 |
0.1542000 |
36.43 |
69.9 |
34 |
730.36 |
5.60 |
61.76 |
0 |
61.76 |
0/1 |
| chr1 |
200842341 |
rs138176594 |
T |
C |
. |
PASS |
0.0015000 |
0.0014000 |
0.0000000 |
0.0129000 |
0.0020000 |
0.0035942 |
36.5 |
70.0 |
51 |
804.50 |
25.00 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
200843305 |
rs3738250 |
G |
T |
. |
PASS |
0.0832000 |
0.2392000 |
0.1766000 |
0.3320000 |
0.1851000 |
0.1935000 |
36.37 |
70.0 |
68 |
1000.00 |
9.44 |
55.88 |
0 |
55.88 |
0/1 |
| chr1 |
200867492 |
rs2271018 |
C |
G |
. |
PASS |
0.1150000 |
0.3112000 |
0.1577000 |
0.2495000 |
0.2198000 |
0.1983000 |
36.65 |
70.0 |
61 |
1000.00 |
12.05 |
55.74 |
0 |
55.74 |
0/1 |
| chr1 |
200868493 |
rs72225687,rs71138306 |
GTGTGTGTGCA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
70.0 |
10 |
82.93 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
200877786 |
rs2279837 |
T |
C |
. |
PASS |
0.0741000 |
0.4193000 |
0.1458000 |
0.3489000 |
0.2495000 |
0.2258000 |
37.0 |
70.0 |
13 |
53.71 |
15.38 |
23.08 |
0 |
23.08 |
0/1 |
| chr1 |
200877850 |
rs41299637 |
T |
G |
. |
PASS |
0.1362000 |
0.1585000 |
0.0020000 |
0.2734000 |
0.1207000 |
0.1368000 |
37.0 |
70.0 |
39 |
890.25 |
12.92 |
64.10 |
0 |
64.10 |
0/1 |
| chr1 |
200880978 |
rs296520 |
C |
T |
. |
PASS |
0.6089000 |
0.8213000 |
0.9970000 |
0.7256000 |
0.8753000 |
0.7919000 |
36.57 |
63.25 |
80 |
884.29 |
6.79 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
200881172 |
rs296521 |
C |
A |
. |
PASS |
0.0923000 |
0.5432000 |
0.2688000 |
0.5298000 |
0.3364000 |
0.3259000 |
36.38 |
65.92 |
89 |
1000.00 |
9.80 |
43.82 |
0 |
43.82 |
0/1 |
| chr1 |
200943793 |
rs71991687,rs201905676 |
CAGGA |
C |
. |
PASS |
0.9955000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9988000 |
34.98 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
200944840 |
rs296563 |
T |
G |
. |
PASS |
0.7746000 |
0.7954000 |
0.7877000 |
0.6899000 |
0.8190000 |
0.7718000 |
36.44 |
70.0 |
124 |
1000.00 |
2.32 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
200957697 |
rs12142704 |
A |
G |
. |
PASS |
0.1566000 |
0.1571000 |
0.0020000 |
0.2813000 |
0.0859000 |
0.1368000 |
37.0 |
70.0 |
15 |
256.55 |
28.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
200960307 |
rs2297909 |
G |
A |
. |
PASS |
0.2330000 |
0.2046000 |
0.2073000 |
0.3101000 |
0.1769000 |
0.2284000 |
36.45 |
69.55 |
57 |
1000.00 |
3.59 |
77.19 |
0 |
77.19 |
0/1 |
| chr1 |
200967490 |
rs10920089 |
A |
G |
. |
PASS |
0.8722000 |
0.4669000 |
0.6270000 |
0.4692000 |
0.3896000 |
0.5915000 |
36.2 |
70.0 |
69 |
988.94 |
11.59 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
200978379 |
rs35918012 |
G |
C |
. |
PASS |
0.0015000 |
0.0231000 |
0.0000000 |
0.0288000 |
0.0092000 |
0.0111820 |
37.0 |
69.05 |
57 |
668.99 |
11.53 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
201009556 |
rs1546416 |
A |
G |
. |
PASS |
0.4160000 |
0.2882000 |
0.3026000 |
0.3648000 |
0.2485000 |
0.3325000 |
37.0 |
70.0 |
25 |
435.29 |
11.08 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
201009897 |
rs6427875 |
T |
C |
. |
PASS |
1.0000000 |
0.9942000 |
1.0000000 |
0.9940000 |
0.9949000 |
0.9970000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201020105 |
rs6702590 |
A |
G |
. |
PASS |
0.9735000 |
0.8213000 |
0.9931000 |
0.6700000 |
0.8967000 |
0.8804000 |
36.68 |
70.0 |
80 |
1000.00 |
1.71 |
47.50 |
0 |
47.50 |
0/1 |
| chr1 |
201031307 |
rs2297903 |
A |
C |
. |
PASS |
0.4917000 |
0.6643000 |
0.7609000 |
0.4960000 |
0.7055000 |
0.6124000 |
36.45 |
70.0 |
29 |
783.03 |
1.25 |
75.86 |
0 |
75.86 |
0/1 |
| chr1 |
201038687 |
rs7415038 |
A |
G |
. |
PASS |
0.5182000 |
0.3012000 |
0.0010000 |
0.4215000 |
0.1575000 |
0.2941000 |
36.7 |
70.0 |
165 |
1000.00 |
4.13 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
201044748 |
rs1998721 |
A |
G |
. |
PASS |
0.4955000 |
0.7536000 |
0.9643000 |
0.7604000 |
0.9090000 |
0.7596000 |
36.7 |
69.5 |
98 |
1000.00 |
1.33 |
40.82 |
0 |
40.82 |
0/1 |
| chr1 |
201047062 |
rs4915476 |
G |
A |
. |
PASS |
0.2920000 |
0.2695000 |
0.0367000 |
0.2425000 |
0.1043000 |
0.1909000 |
35.97 |
70.0 |
89 |
1000.00 |
0.51 |
39.33 |
0 |
39.33 |
0/1 |
| chr1 |
201047075 |
rs4915477 |
A |
G |
. |
PASS |
0.9433000 |
0.6484000 |
0.2302000 |
0.6571000 |
0.2761000 |
0.5711000 |
36.85 |
70.0 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201047111 |
rs9427714 |
A |
G |
. |
PASS |
0.0280000 |
0.2032000 |
0.0010000 |
0.3400000 |
0.1176000 |
0.1270000 |
36.78 |
70.0 |
94 |
1000.00 |
2.71 |
58.51 |
0 |
58.51 |
0/1 |
| chr1 |
201052199 |
rs3767511 |
T |
C |
. |
PASS |
0.2950000 |
0.2320000 |
0.0327000 |
0.2425000 |
0.1104000 |
0.1869000 |
37.0 |
70.0 |
20 |
283.26 |
7.78 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
201052310 |
rs12742169 |
A |
T |
. |
PASS |
0.0257000 |
0.2032000 |
0.0010000 |
0.3400000 |
0.1217000 |
0.1272000 |
36.41 |
70.0 |
107 |
1000.00 |
5.65 |
38.32 |
0 |
38.32 |
0/1 |
| chr1 |
201052312 |
rs12742170 |
A |
C |
. |
PASS |
0.0257000 |
0.2032000 |
0.0010000 |
0.3400000 |
0.1217000 |
0.1272000 |
36.71 |
70.0 |
110 |
1000.00 |
0.69 |
38.18 |
0 |
38.18 |
0/1 |
| chr1 |
201052474 |
rs12724643 |
T |
C |
. |
PASS |
0.0257000 |
0.2032000 |
0.0010000 |
0.3400000 |
0.1217000 |
0.1272000 |
37.0 |
70.0 |
34 |
658.83 |
13.62 |
55.88 |
0 |
55.88 |
0/1 |
| chr1 |
201054197 |
rs41267505 |
G |
T |
. |
PASS |
0.1460000 |
0.2334000 |
0.0317000 |
0.1799000 |
0.0777000 |
0.1286000 |
36.62 |
70.0 |
48 |
1000.00 |
6.25 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
201058692 |
rs2296384 |
T |
C |
. |
PASS |
0.5938000 |
0.5216000 |
0.4087000 |
0.6024000 |
0.4581000 |
0.5218000 |
37.0 |
70.0 |
10 |
188.05 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
201060865 |
rs2296383 |
G |
A |
. |
PASS |
0.0522000 |
0.3963000 |
0.3929000 |
0.4105000 |
0.3834000 |
0.3051000 |
35.86 |
70.0 |
101 |
1000.00 |
9.34 |
41.58 |
0 |
41.58 |
0/1 |
| chr1 |
201112981 |
rs8158 |
A |
G |
. |
PASS |
0.6362000 |
0.7133000 |
0.6260000 |
0.7644000 |
0.7515000 |
0.6931000 |
36.61 |
70.0 |
68 |
1000.00 |
9.68 |
45.59 |
0 |
45.59 |
0/1 |
| chr1 |
201113118 |
rs3738266 |
A |
G |
. |
PASS |
0.9433000 |
0.9625000 |
0.8740000 |
0.9543000 |
0.9663000 |
0.9387000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201116018 |
rs3752979 |
C |
G |
. |
PASS |
0.9433000 |
0.9625000 |
0.8740000 |
0.9543000 |
0.9663000 |
0.9387000 |
36.4 |
70.0 |
20 |
783.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201122784 |
rs6684980 |
C |
T |
. |
PASS |
0.6172000 |
0.7133000 |
0.6210000 |
0.7644000 |
0.7454000 |
0.6859000 |
34.0 |
70.0 |
26 |
199.41 |
3.85 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
201122816 |
rs16847895 |
T |
C |
. |
PASS |
0.0446000 |
0.2233000 |
0.1349000 |
0.1700000 |
0.1115000 |
0.1258000 |
35.62 |
70.0 |
46 |
879.08 |
5.69 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
201122947 |
rs1925361 |
T |
G |
. |
PASS |
0.9455000 |
0.9625000 |
0.8750000 |
0.9543000 |
0.9663000 |
0.9395000 |
36.35 |
70.0 |
130 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201166281 |
rs7533096 |
C |
T |
. |
PASS |
0.6172000 |
0.3213000 |
0.5347000 |
0.4145000 |
0.5368000 |
0.5032000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201166383 |
rs4915221 |
G |
A |
. |
PASS |
0.8101000 |
0.5735000 |
0.8562000 |
0.5547000 |
0.7965000 |
0.7326000 |
36.48 |
69.78 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201166435 |
rs11589317 |
T |
C |
. |
PASS |
0.8623000 |
0.7939000 |
0.8552000 |
0.9364000 |
0.8691000 |
0.8676000 |
36.53 |
69.47 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201170772 |
rs10157730 |
A |
G |
. |
PASS |
0.8858000 |
0.8487000 |
1.0000000 |
0.9463000 |
0.9560000 |
0.9295000 |
37.0 |
68.95 |
19 |
758.16 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201170824 |
rs10158976 |
C |
G |
. |
PASS |
0.8865000 |
0.8487000 |
1.0000000 |
0.9463000 |
0.9560000 |
0.9297000 |
35.8 |
69.2 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201171007 |
rs10800762 |
T |
G |
. |
PASS |
0.5121000 |
0.5850000 |
0.9435000 |
0.7684000 |
0.7219000 |
0.7015000 |
36.75 |
69.58 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
201173104 |
rs832160 |
C |
T |
. |
PASS |
0.3298000 |
0.5937000 |
0.6587000 |
0.6233000 |
0.5399000 |
0.5325000 |
37.0 |
70.0 |
44 |
461.65 |
19.09 |
34.09 |
0 |
34.09 |
0/1 |
| chr1 |
201175227 |
rs832156 |
C |
A |
. |
PASS |
0.8775000 |
0.7450000 |
0.6687000 |
0.7217000 |
0.7607000 |
0.7630000 |
37.0 |
69.31 |
45 |
1000.00 |
10.57 |
64.44 |
0 |
64.44 |
0/1 |
| chr1 |
201175274 |
rs9651057 |
A |
G |
. |
PASS |
0.1467000 |
0.4063000 |
0.5903000 |
0.4821000 |
0.3333000 |
0.3758000 |
36.69 |
70.0 |
86 |
1000.00 |
10.02 |
45.35 |
0 |
45.35 |
0/1 |
| chr1 |
201175715 |
rs1341631 |
G |
T |
. |
PASS |
0.8775000 |
0.7450000 |
0.6736000 |
0.7217000 |
0.7607000 |
0.7640000 |
36.14 |
70.0 |
51 |
955.43 |
11.62 |
54.90 |
0 |
54.90 |
0/1 |
| chr1 |
201176018 |
rs10753895 |
A |
G |
. |
PASS |
0.8775000 |
0.7464000 |
0.6716000 |
0.7217000 |
0.7607000 |
0.7638000 |
36.69 |
70.0 |
79 |
1000.00 |
6.43 |
49.37 |
0 |
49.37 |
0/1 |
| chr1 |
201176108 |
rs12094334 |
G |
A |
. |
PASS |
0.1997000 |
0.3156000 |
0.3095000 |
0.3489000 |
0.4131000 |
0.3095000 |
36.57 |
70.0 |
54 |
962.55 |
10.58 |
51.85 |
0 |
51.85 |
0/1 |
| chr1 |
201176968 |
rs12063867 |
A |
G |
. |
PASS |
0.1762000 |
0.3156000 |
0.3095000 |
0.3509000 |
0.4131000 |
0.3037000 |
36.11 |
70.0 |
87 |
809.48 |
3.58 |
31.03 |
0 |
31.03 |
0/1 |
| chr1 |
201177246 |
rs72751165 |
T |
C |
. |
PASS |
0.2065000 |
0.3184000 |
0.3095000 |
0.3499000 |
0.4121000 |
0.3117000 |
36.29 |
70.0 |
72 |
1000.00 |
5.23 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
201177278 |
rs7551098 |
C |
T |
. |
PASS |
0.2065000 |
0.3156000 |
0.3105000 |
0.3499000 |
0.4121000 |
0.3115000 |
36.48 |
70.0 |
47 |
774.78 |
5.92 |
48.94 |
0 |
48.94 |
0/1 |
| chr1 |
201177538 |
rs7551538 |
G |
T |
. |
PASS |
0.1778000 |
0.3156000 |
0.3105000 |
0.3499000 |
0.4131000 |
0.3041000 |
36.69 |
70.0 |
77 |
1000.00 |
1.27 |
50.65 |
0 |
50.65 |
0/1 |
| chr1 |
201178470 |
rs12757706 |
G |
A |
. |
PASS |
0.1755000 |
0.3141000 |
0.3095000 |
0.3499000 |
0.4182000 |
0.3041000 |
36.6 |
70.0 |
69 |
1000.00 |
24.06 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
201178667 |
rs199718718 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
60.0 |
106 |
50.05 |
47.55 |
9.43 |
0 |
9.43 |
0/1 |
| chr1 |
201178788 |
rs66922684 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.93 |
65.13 |
111 |
1000.00 |
4.50 |
59.46 |
0 |
60.36 |
0/1 |
| chr1 |
201178819 |
rs72468019 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
69.92 |
107 |
585.20 |
29.50 |
21.50 |
0 |
22.43 |
0/1 |
| chr1 |
201178866 |
rs111738288 |
A |
G |
. |
PASS |
0.1793000 |
0.2493000 |
0.2431000 |
0.2535000 |
0.3139000 |
0.2430000 |
34.94 |
62.51 |
108 |
877.33 |
5.97 |
28.70 |
0 |
32.41 |
0/1 |
| chr1 |
201178904 |
rs201227267 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.96 |
55.11 |
119 |
1000.00 |
13.03 |
37.82 |
0 |
38.66 |
0/1 |
| chr1 |
201178924 |
rs6678538 |
A |
G |
. |
PASS |
0.4440000 |
0.4222000 |
0.4544000 |
0.4225000 |
0.4601000 |
0.4419000 |
35.67 |
57.2 |
107 |
1000.00 |
10.18 |
50.47 |
0 |
50.47 |
0/1 |
| chr1 |
201178926 |
rs6702960 |
G |
A |
. |
PASS |
0.4440000 |
0.4222000 |
0.4554000 |
0.4225000 |
0.4611000 |
0.4423000 |
36.14 |
57.18 |
103 |
1000.00 |
14.94 |
54.37 |
0 |
54.37 |
0/1 |
| chr1 |
201178965 |
rs12758143 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
59.58 |
136 |
1000.00 |
6.74 |
45.59 |
0 |
45.59 |
0/1 |
| chr1 |
201178984 |
rs12758581 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.88 |
62.65 |
150 |
163.38 |
48.67 |
10.67 |
0 |
11.33 |
0/1 |
| chr1 |
201179050 |
rs1722732 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.84 |
64.65 |
125 |
850.15 |
16.93 |
24.80 |
0 |
24.80 |
0/1 |
| chr1 |
201179068 |
rs199816935 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.78 |
146 |
655.88 |
7.00 |
18.49 |
0 |
18.49 |
0/1 |
| chr1 |
201179082 |
rs1772843 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.11 |
69.0 |
147 |
282.70 |
25.64 |
12.93 |
0 |
12.93 |
0/1 |
| chr1 |
201179599 |
rs12021954 |
G |
C |
. |
PASS |
0.0741000 |
0.1527000 |
0.2004000 |
0.1769000 |
0.1155000 |
0.1392000 |
35.8 |
64.2 |
13 |
329.94 |
36.92 |
76.92 |
0 |
76.92 |
0/1 |
| chr1 |
201180083 |
. |
GGG |
GGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
69.82 |
91 |
230.62 |
38.46 |
15.38 |
0 |
60.44 |
0/1 |
| chr1 |
201180083 |
. |
GGG |
GTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
69.82 |
91 |
230.62 |
2.57 |
45.05 |
0 |
60.44 |
0/1 |
| chr1 |
201180091 |
. |
GAA |
GGG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
69.57 |
87 |
245.71 |
36.62 |
16.09 |
0 |
16.09 |
0/1 |
| chr1 |
201180100 |
rs4915223 |
C |
G |
. |
PASS |
0.1952000 |
0.1988000 |
0.2778000 |
0.2386000 |
0.1646000 |
0.2151000 |
36.14 |
69.57 |
75 |
310.42 |
52.19 |
18.67 |
0 |
18.67 |
0/1 |
| chr1 |
201180140 |
rs58792551 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.82 |
62 |
240.41 |
9.09 |
17.74 |
0 |
17.74 |
0/1 |
| chr1 |
201180145 |
rs12022767 |
G |
A |
. |
PASS |
0.4418000 |
0.4020000 |
0.3601000 |
0.3976000 |
0.4734000 |
0.4171000 |
36.25 |
69.88 |
65 |
428.22 |
45.38 |
24.62 |
0 |
24.62 |
0/1 |
| chr1 |
201180148 |
rs145517342 |
A |
G |
. |
PASS |
0.4433000 |
0.4035000 |
0.3661000 |
0.3996000 |
0.4734000 |
0.4193000 |
37.0 |
69.85 |
59 |
332.95 |
70.93 |
22.03 |
0 |
22.03 |
0/1 |
| chr1 |
201180153 |
rs12029808 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.82 |
64 |
234.38 |
63.64 |
17.19 |
0 |
17.19 |
0/1 |
| chr1 |
201180162 |
rs12029809 |
A |
C |
. |
PASS |
0.3313000 |
0.3012000 |
0.2173000 |
0.2604000 |
0.4223000 |
0.3077000 |
37.0 |
69.75 |
68 |
92.87 |
58.82 |
11.76 |
0 |
11.76 |
0/1 |
| chr1 |
201180501 |
rs71635536 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
68.59 |
118 |
1000.00 |
16.58 |
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. |
. |
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0/1 |
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526.72 |
7.62 |
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0/1 |
| chr1 |
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261.42 |
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66.67 |
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rs4950806 |
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32 |
456.01 |
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0 |
43.75 |
0/1 |
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rs4950807 |
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0/1 |
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100.00 |
1/1 |
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rs4332408 |
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PASS |
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1000.00 |
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100.00 |
0 |
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1/1 |
| chr1 |
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rs4131469 |
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PASS |
0.1619000 |
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1000.00 |
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100.00 |
0 |
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1/1 |
| chr1 |
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rs11543979 |
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0/1 |
| chr1 |
201981353 |
. |
CTG |
CCC |
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PASS |
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. |
. |
. |
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28 |
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0 |
35.71 |
0/1 |
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201981862 |
rs2819362 |
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0/1 |
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rs2819365 |
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0 |
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1/1 |
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1/1 |
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rs7516762 |
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PASS |
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0 |
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1/1 |
| chr1 |
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PASS |
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1/1 |
| chr1 |
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rs72390540,rs140055888,rs60365890 |
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A |
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. |
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33.59 |
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55.00 |
0/1 |
| chr1 |
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rs10920337 |
G |
A |
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PASS |
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0 |
51.40 |
0/1 |
| chr1 |
202123259 |
. |
T |
G |
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PASS |
. |
. |
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. |
. |
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37.0 |
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22 |
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154.55 |
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18.18 |
0/1 |
| chr1 |
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rs4309039 |
T |
C |
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PASS |
0.1006000 |
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43.94 |
0 |
43.94 |
0/1 |
| chr1 |
202130754 |
rs3934648 |
T |
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0 |
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1/1 |
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rs2361431 |
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C |
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45 |
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0 |
33.33 |
0/1 |
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rs6665965 |
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0 |
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rs10920362 |
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0/1 |
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1/1 |
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1/1 |
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1/1 |
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rs788795 |
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1/1 |
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1/1 |
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1/1 |
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1/1 |
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1/1 |
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1/1 |
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1/1 |
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1/1 |
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1 |
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0/1 |
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1/1 |
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1/1 |
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28.97 |
0/1 |
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26.60 |
0/1 |
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0/1 |
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0/1 |
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0 |
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0/1 |
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0/1 |
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1/1 |
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. |
PASS |
0.2761000 |
0.3948000 |
0.3909000 |
0.5567000 |
0.5419000 |
0.4239000 |
37.0 |
70.0 |
11 |
264.43 |
0.00 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
203030685 |
rs2270543 |
T |
C |
. |
PASS |
0.4433000 |
0.4841000 |
0.4137000 |
0.5586000 |
0.5798000 |
0.4928000 |
35.91 |
70.0 |
25 |
339.75 |
5.09 |
44.00 |
0 |
44.00 |
0/1 |
| chr1 |
203032877 |
rs72754783 |
C |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0003994 |
37.0 |
70.0 |
15 |
335.93 |
13.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
203032922 |
rs1416262 |
C |
T |
. |
PASS |
0.2451000 |
0.2752000 |
0.2054000 |
0.3807000 |
0.3538000 |
0.2897000 |
37.0 |
70.0 |
41 |
637.76 |
6.16 |
46.34 |
0 |
46.34 |
0/1 |
| chr1 |
203036757 |
rs2275354 |
T |
C |
. |
PASS |
0.4183000 |
0.4856000 |
0.4107000 |
0.5606000 |
0.5767000 |
0.4856000 |
37.0 |
70.0 |
11 |
185.05 |
6.06 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
203040740 |
rs11583155 |
T |
C |
. |
PASS |
0.5930000 |
0.5274000 |
0.4573000 |
0.6223000 |
0.6207000 |
0.5679000 |
37.0 |
70.0 |
25 |
309.99 |
24.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
203040816 |
rs2270540 |
G |
C |
. |
PASS |
0.5250000 |
0.5216000 |
0.4573000 |
0.6223000 |
0.6207000 |
0.5491000 |
36.31 |
70.0 |
87 |
1000.00 |
0.66 |
40.23 |
0 |
40.23 |
0/1 |
| chr1 |
203045042 |
rs903365 |
T |
C |
. |
PASS |
0.6407000 |
0.5432000 |
0.4653000 |
0.6193000 |
0.6207000 |
0.5837000 |
35.91 |
70.0 |
26 |
336.74 |
4.90 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
203053768 |
rs903356 |
T |
C |
. |
PASS |
0.9992000 |
0.9827000 |
0.8819000 |
0.9742000 |
0.9366000 |
0.9561000 |
37.0 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203053870 |
rs72739504 |
C |
T |
. |
PASS |
0.0000000 |
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0.0020000 |
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36.04 |
70.0 |
55 |
822.22 |
3.64 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
203054523 |
rs923950 |
A |
T |
. |
PASS |
0.9992000 |
0.9755000 |
0.8800000 |
0.9692000 |
0.9387000 |
0.9541000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203055101 |
rs4950877 |
A |
G |
. |
PASS |
0.5219000 |
0.6196000 |
0.5308000 |
0.5427000 |
0.4141000 |
0.5204000 |
37.0 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203137784 |
rs35823777 |
A |
ACT |
. |
PASS |
0.7693000 |
0.7392000 |
0.4067000 |
0.8857000 |
0.8139000 |
0.7242000 |
36.75 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203142405 |
rs2788529 |
A |
G |
. |
PASS |
0.6853000 |
0.5447000 |
0.3343000 |
0.5994000 |
0.5624000 |
0.5539000 |
36.72 |
70.0 |
128 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203143395 |
rs3737872 |
T |
C |
. |
PASS |
0.0802000 |
0.2565000 |
0.1141000 |
0.4175000 |
0.2229000 |
0.2071000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203148633 |
rs4950927 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
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0.9990000 |
0.9990000 |
0.9996000 |
36.5 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203152801 |
rs880633 |
T |
C |
. |
PASS |
0.1747000 |
0.3343000 |
0.3839000 |
0.5417000 |
0.4836000 |
0.3730000 |
36.58 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203153634 |
rs2071579 |
C |
G |
. |
PASS |
0.1906000 |
0.3357000 |
0.3542000 |
0.5437000 |
0.4816000 |
0.3714000 |
37.0 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203154532 |
rs1538372 |
A |
G |
. |
PASS |
0.7141000 |
0.6484000 |
0.6627000 |
0.6829000 |
0.6524000 |
0.6763000 |
37.0 |
70.0 |
24 |
967.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203155882 |
rs4950928 |
G |
C |
. |
PASS |
0.6626000 |
0.8271000 |
0.8512000 |
0.8191000 |
0.8200000 |
0.7855000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203317162 |
rs7543148 |
C |
T |
. |
PASS |
0.2708000 |
0.7925000 |
0.6528000 |
0.8608000 |
0.6800000 |
0.6184000 |
36.49 |
70.0 |
117 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203322477 |
rs6671650 |
T |
C |
. |
PASS |
0.7489000 |
0.8660000 |
0.6022000 |
0.9423000 |
0.8824000 |
0.8005000 |
37.0 |
68.95 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203322521 |
rs6658996 |
G |
C |
. |
PASS |
0.8873000 |
0.9928000 |
1.0000000 |
1.0000000 |
0.9990000 |
0.9690000 |
37.0 |
69.3 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203396821 |
rs6702330 |
C |
A |
. |
PASS |
0.6331000 |
0.7550000 |
0.5437000 |
0.6809000 |
0.6084000 |
0.6368000 |
37.0 |
69.0 |
23 |
837.56 |
4.74 |
95.65 |
0 |
95.65 |
1/1 |
| chr1 |
203452409 |
rs41313926 |
G |
A |
. |
PASS |
0.0008000 |
0.0317000 |
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0.0215000 |
0.0105830 |
37.0 |
70.0 |
72 |
1000.00 |
5.23 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
203452720 |
rs2233725 |
C |
T |
. |
PASS |
0.0008000 |
0.0360000 |
0.0198000 |
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0.0189700 |
36.44 |
70.0 |
88 |
1000.00 |
4.81 |
48.86 |
0 |
48.86 |
0/1 |
| chr1 |
203453306 |
. |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
31.0 |
70.0 |
17 |
55.28 |
152.94 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
203456129 |
rs2233733 |
C |
T |
. |
PASS |
0.0008000 |
0.0360000 |
0.0198000 |
0.0080000 |
0.0419000 |
0.0189700 |
37.0 |
70.0 |
11 |
143.27 |
0.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
203465396 |
rs2242199 |
T |
C |
. |
PASS |
0.2912000 |
0.3487000 |
0.4692000 |
0.4125000 |
0.4233000 |
0.3852000 |
36.32 |
69.62 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203465450 |
rs72743632 |
G |
A |
. |
PASS |
0.0000000 |
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0.0000000 |
0.0009984 |
37.0 |
68.0 |
17 |
334.06 |
0.00 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
203472119 |
rs72743637 |
G |
A |
. |
PASS |
0.0008000 |
0.0360000 |
0.0188000 |
0.0070000 |
0.0389000 |
0.0179710 |
36.4 |
69.0 |
42 |
664.51 |
5.24 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
203472942 |
rs56073037 |
C |
T |
. |
PASS |
0.0008000 |
0.0360000 |
0.0188000 |
0.0070000 |
0.0389000 |
0.0179710 |
37.0 |
70.0 |
26 |
682.91 |
1.62 |
73.08 |
0 |
73.08 |
0/1 |
| chr1 |
203570807 |
rs2802781 |
T |
C |
. |
PASS |
0.6679000 |
0.4986000 |
0.6478000 |
0.3827000 |
0.6145000 |
0.5727000 |
37.0 |
70.0 |
61 |
1000.00 |
3.92 |
59.02 |
0 |
59.02 |
0/1 |
| chr1 |
203626364 |
rs7544854 |
C |
G |
. |
PASS |
0.8018000 |
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1.0000000 |
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1.0000000 |
0.9455000 |
36.0 |
70.0 |
24 |
938.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203652444 |
rs1419114 |
A |
G |
. |
PASS |
0.6354000 |
0.9366000 |
0.9990000 |
0.8976000 |
0.8763000 |
0.8500000 |
37.0 |
70.0 |
62 |
1000.00 |
3.76 |
58.06 |
0 |
58.06 |
0/1 |
| chr1 |
203667409 |
rs2228445 |
T |
C |
. |
PASS |
0.6725000 |
0.9395000 |
0.9990000 |
0.8976000 |
0.8742000 |
0.8598000 |
35.87 |
70.0 |
98 |
1000.00 |
6.47 |
54.08 |
0 |
54.08 |
0/1 |
| chr1 |
203740458 |
rs3820196 |
C |
A |
. |
PASS |
0.2345000 |
0.3732000 |
0.6101000 |
0.0666000 |
0.2086000 |
0.2905000 |
36.2 |
70.0 |
25 |
502.68 |
16.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
203740462 |
rs3820195 |
G |
A |
. |
PASS |
0.2345000 |
0.3732000 |
0.6101000 |
0.0666000 |
0.2086000 |
0.2905000 |
36.2 |
70.0 |
27 |
500.81 |
13.33 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
203740615 |
rs3737976 |
T |
C |
. |
PASS |
0.3215000 |
0.4582000 |
0.1042000 |
0.5984000 |
0.4131000 |
0.3702000 |
36.65 |
70.0 |
79 |
1000.00 |
2.90 |
43.04 |
0 |
43.04 |
0/1 |
| chr1 |
203741368 |
rs3737973 |
C |
A |
. |
PASS |
0.3041000 |
0.4539000 |
0.1369000 |
0.5944000 |
0.4192000 |
0.3720000 |
34.33 |
70.0 |
13 |
276.17 |
13.68 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
203768328 |
rs7552670 |
T |
C |
. |
PASS |
0.0484000 |
0.3213000 |
0.2887000 |
0.1173000 |
0.2290000 |
0.1837000 |
36.52 |
70.0 |
65 |
804.13 |
14.15 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
203769532 |
rs7540041 |
G |
A |
. |
PASS |
0.0499000 |
0.3199000 |
0.2887000 |
0.1183000 |
0.2270000 |
0.1837000 |
35.88 |
70.0 |
61 |
1000.00 |
4.61 |
52.46 |
0 |
52.46 |
0/1 |
| chr1 |
203774793 |
rs7532505 |
C |
T |
. |
PASS |
0.0484000 |
0.3199000 |
0.2887000 |
0.1173000 |
0.2280000 |
0.1833000 |
37.0 |
70.0 |
12 |
140.26 |
20.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
203787700 |
rs4951260 |
T |
C |
. |
PASS |
0.9228000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9788000 |
36.46 |
69.73 |
89 |
1000.00 |
0.92 |
98.88 |
0 |
100.00 |
1/1 |
| chr1 |
203800735 |
rs2275325 |
G |
C |
. |
PASS |
0.1694000 |
0.3761000 |
0.3244000 |
0.2445000 |
0.3190000 |
0.2736000 |
37.0 |
70.0 |
38 |
600.87 |
7.60 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
203803016 |
rs6694647 |
A |
G |
. |
PASS |
0.9228000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9788000 |
36.33 |
70.0 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203821200 |
rs7512877 |
G |
A |
. |
PASS |
0.9228000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9788000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
203850090 |
rs6702219 |
G |
A |
. |
PASS |
0.5174000 |
0.4135000 |
0.5496000 |
0.5308000 |
0.4509000 |
0.4992000 |
36.76 |
70.0 |
85 |
1000.00 |
5.41 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
203924819 |
rs2810643 |
A |
G |
. |
PASS |
0.5242000 |
0.6441000 |
0.5665000 |
0.6531000 |
0.6452000 |
0.5988000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204082002 |
rs2293336 |
C |
T |
. |
PASS |
0.0348000 |
0.4914000 |
0.2490000 |
0.3867000 |
0.4898000 |
0.3007000 |
37.0 |
70.0 |
25 |
435.30 |
10.46 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
204082323 |
rs760312 |
C |
T |
. |
PASS |
0.2685000 |
0.5504000 |
0.2500000 |
0.4573000 |
0.5736000 |
0.4014000 |
36.56 |
70.0 |
72 |
866.60 |
7.41 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
204085609 |
rs7551756 |
A |
G |
. |
PASS |
0.2489000 |
0.3184000 |
0.7292000 |
0.3887000 |
0.3119000 |
0.3956000 |
37.0 |
70.0 |
43 |
631.74 |
8.57 |
44.19 |
0 |
44.19 |
0/1 |
| chr1 |
204094902 |
rs2692010 |
T |
C |
. |
PASS |
0.7617000 |
0.9467000 |
1.0000000 |
0.9742000 |
0.9775000 |
0.9201000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204095220 |
rs1064981 |
C |
T |
. |
PASS |
0.0015000 |
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0.0010000 |
0.0179000 |
0.0000000 |
0.0053914 |
36.76 |
70.0 |
89 |
1000.00 |
0.50 |
55.06 |
0 |
55.06 |
0/1 |
| chr1 |
204103618 |
rs2293335 |
G |
A |
. |
PASS |
0.1536000 |
0.6715000 |
0.5298000 |
0.6889000 |
0.5890000 |
0.4936000 |
36.42 |
69.68 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204120952 |
rs3737655 |
G |
T |
. |
PASS |
0.1770000 |
0.1859000 |
0.0724000 |
0.1581000 |
0.0838000 |
0.1352000 |
36.72 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204124865 |
rs2368564 |
C |
T |
. |
PASS |
0.7405000 |
0.3012000 |
0.2063000 |
0.2594000 |
0.2025000 |
0.3704000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204125089 |
rs3795575 |
G |
A |
. |
PASS |
0.1778000 |
0.1844000 |
0.0704000 |
0.1382000 |
0.0757000 |
0.1292000 |
37.0 |
68.57 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204125464 |
. |
T |
TCAGACAGACAGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
70.0 |
117 |
1000.00 |
1.71 |
88.89 |
0 |
98.29 |
1/1 |
| chr1 |
204126378 |
rs3730102 |
G |
A |
. |
PASS |
0.1687000 |
0.1844000 |
0.0704000 |
0.1382000 |
0.0777000 |
0.1272000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204128832 |
rs11571084 |
C |
T |
. |
PASS |
0.0023000 |
0.0303000 |
0.0000000 |
0.0358000 |
0.0072000 |
0.0133790 |
35.8 |
68.0 |
11 |
340.40 |
3.64 |
90.91 |
0 |
90.91 |
0/1 |
| chr1 |
204129554 |
rs1917539 |
T |
C |
. |
PASS |
0.3585000 |
0.2046000 |
0.0903000 |
0.1372000 |
0.0920000 |
0.1867000 |
35.84 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204131031 |
rs11571082 |
C |
T |
. |
PASS |
0.2723000 |
0.1729000 |
0.0565000 |
0.1352000 |
0.0920000 |
0.1524000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204131186 |
rs5705 |
T |
G |
. |
PASS |
0.3177000 |
0.1801000 |
0.0784000 |
0.1372000 |
0.0920000 |
0.1701000 |
36.56 |
69.81 |
108 |
1000.00 |
0.31 |
98.15 |
0 |
100.00 |
1/1 |
| chr1 |
204159787 |
rs4889 |
G |
C |
. |
PASS |
0.4009000 |
0.3156000 |
0.4216000 |
0.2545000 |
0.2270000 |
0.3299000 |
37.0 |
70.0 |
44 |
666.36 |
4.55 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
204161947 |
rs12998 |
C |
T |
. |
PASS |
0.0038000 |
0.0317000 |
0.0238000 |
0.0408000 |
0.0245000 |
0.0232000 |
36.6 |
70.0 |
66 |
1000.00 |
2.42 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
204167672 |
rs3795573 |
T |
C |
. |
PASS |
0.2965000 |
0.1369000 |
0.0288000 |
0.1620000 |
0.0930000 |
0.1538000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204170993 |
rs6700426 |
A |
G |
. |
PASS |
0.3850000 |
0.0965000 |
0.0298000 |
0.0527000 |
0.0552000 |
0.1424000 |
34.33 |
70.0 |
22 |
253.22 |
10.10 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
204172060 |
rs6689599 |
G |
C |
. |
PASS |
0.2413000 |
0.0836000 |
0.0060000 |
0.0517000 |
0.0297000 |
0.0927000 |
36.83 |
70.0 |
155 |
1000.00 |
3.78 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
204172096 |
rs6689607 |
G |
A |
. |
PASS |
0.2352000 |
0.0836000 |
0.0060000 |
0.0517000 |
0.0297000 |
0.0911000 |
36.52 |
70.0 |
160 |
1000.00 |
5.42 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
204197048 |
rs7519944 |
C |
T |
. |
PASS |
0.6914000 |
0.5389000 |
0.4802000 |
0.4344000 |
0.3579000 |
0.5110000 |
34.82 |
70.0 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204198209 |
rs3795571 |
A |
G |
. |
PASS |
0.6967000 |
0.5389000 |
0.4802000 |
0.4344000 |
0.3579000 |
0.5124000 |
36.42 |
70.0 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204199614 |
rs10900562 |
C |
T |
. |
PASS |
0.6914000 |
0.5375000 |
0.4802000 |
0.4334000 |
0.3579000 |
0.5106000 |
36.34 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204210750 |
rs4412655 |
C |
A |
. |
PASS |
0.1846000 |
0.4467000 |
0.4762000 |
0.3280000 |
0.2832000 |
0.3277000 |
36.65 |
69.41 |
35 |
1000.00 |
1.34 |
97.14 |
0 |
97.14 |
1/1 |
| chr1 |
204210791 |
rs4951325 |
G |
A |
. |
PASS |
0.1853000 |
0.4467000 |
0.4762000 |
0.3280000 |
0.2832000 |
0.3279000 |
36.73 |
69.78 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204213612 |
rs4265489 |
G |
A |
. |
PASS |
0.6921000 |
0.5360000 |
0.4821000 |
0.4324000 |
0.3548000 |
0.5102000 |
36.89 |
70.0 |
105 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204216410 |
rs4951329 |
C |
T |
. |
PASS |
0.7670000 |
0.7752000 |
0.8085000 |
0.6213000 |
0.5470000 |
0.7043000 |
36.25 |
70.0 |
17 |
579.96 |
2.21 |
94.12 |
0 |
94.12 |
1/1 |
| chr1 |
204216468 |
rs4512713 |
C |
T |
. |
PASS |
0.6589000 |
0.7608000 |
0.8085000 |
0.6183000 |
0.5256000 |
0.6689000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204216601 |
rs4288652 |
G |
A |
. |
PASS |
0.6589000 |
0.7608000 |
0.8085000 |
0.6183000 |
0.5194000 |
0.6677000 |
36.65 |
70.0 |
34 |
1000.00 |
1.78 |
97.06 |
0 |
100.00 |
1/1 |
| chr1 |
204219559 |
rs3795570 |
T |
G |
. |
PASS |
0.7466000 |
0.7709000 |
0.8085000 |
0.6193000 |
0.5266000 |
0.6939000 |
36.52 |
70.0 |
25 |
992.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204230581 |
rs3795569 |
G |
A |
. |
PASS |
0.5068000 |
0.6960000 |
0.8095000 |
0.5268000 |
0.5051000 |
0.5976000 |
35.92 |
69.8 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204234196 |
. |
G |
GGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.05 |
70.0 |
19 |
685.51 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204237416 |
rs10900571 |
C |
T |
. |
PASS |
0.4750000 |
0.7637000 |
0.8046000 |
0.6610000 |
0.5460000 |
0.6326000 |
36.79 |
69.64 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204315882 |
rs35603588,rs200317938 |
C |
CT |
. |
PASS |
0.2753000 |
0.6499000 |
0.6835000 |
0.6610000 |
0.5992000 |
0.5501000 |
37.0 |
69.6 |
11 |
337.09 |
10.91 |
90.91 |
0 |
90.91 |
0/1 |
| chr1 |
204379617 |
rs3014626 |
T |
C |
. |
PASS |
0.8880000 |
0.9914000 |
1.0000000 |
0.9980000 |
1.0000000 |
0.9689000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204409159 |
rs35627670,rs72501024 |
T |
TC |
. |
PASS |
0.6732000 |
0.9899000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9121000 |
37.0 |
70.0 |
10 |
366.64 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204409281 |
rs3014631 |
C |
G |
. |
PASS |
0.6732000 |
0.9899000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9121000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204413297 |
rs2292459 |
C |
T |
. |
PASS |
0.4236000 |
0.7723000 |
0.4940000 |
0.7753000 |
0.7004000 |
0.6108000 |
36.42 |
70.0 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204413299 |
rs2292460 |
G |
A |
. |
PASS |
0.3608000 |
0.7594000 |
0.3869000 |
0.7744000 |
0.6534000 |
0.5615000 |
36.41 |
70.0 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204418198 |
rs2271427 |
T |
C |
. |
PASS |
0.5666000 |
0.8357000 |
0.5685000 |
0.7803000 |
0.6984000 |
0.6729000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204418889 |
rs2999492 |
C |
T |
. |
PASS |
0.4614000 |
0.7738000 |
0.4911000 |
0.7744000 |
0.6922000 |
0.6186000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204418939 |
rs3014637 |
C |
T |
. |
PASS |
0.3502000 |
0.7579000 |
0.3859000 |
0.7724000 |
0.6534000 |
0.5579000 |
36.28 |
69.6 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204426028 |
. |
ACACACACC |
ACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
15 |
366.29 |
53.33 |
26.67 |
0 |
100.00 |
0/1 |
| chr1 |
204426028 |
. |
ACACACACC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.45 |
70.0 |
15 |
366.29 |
19.39 |
73.33 |
0 |
100.00 |
0/1 |
| chr1 |
204426052 |
rs2999490 |
A |
C |
. |
PASS |
0.3502000 |
0.8184000 |
0.4226000 |
0.7813000 |
0.6616000 |
0.5771000 |
36.37 |
70.0 |
20 |
700.35 |
3.16 |
95.00 |
0 |
95.00 |
1/1 |
| chr1 |
204429838 |
rs2271414 |
C |
G |
. |
PASS |
0.3487000 |
0.8991000 |
0.8224000 |
0.9901000 |
0.9387000 |
0.7644000 |
37.0 |
70.0 |
24 |
962.86 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204433093 |
rs2271415 |
A |
C |
. |
PASS |
0.2474000 |
0.8098000 |
0.4236000 |
0.7813000 |
0.6616000 |
0.5489000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204433511 |
rs11455991 |
T |
TC |
. |
PASS |
0.6989000 |
0.9827000 |
0.9990000 |
0.9970000 |
0.9908000 |
0.9155000 |
36.31 |
69.43 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204438334 |
rs1124777 |
C |
T |
. |
PASS |
0.2413000 |
0.8948000 |
0.8194000 |
0.9841000 |
0.9100000 |
0.7280000 |
36.47 |
69.56 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204438643 |
rs1553921 |
G |
T |
. |
PASS |
0.2368000 |
0.8963000 |
0.8194000 |
0.9841000 |
0.9110000 |
0.7272000 |
35.9 |
69.8 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204495595 |
rs200388119,rs373025364 |
G |
GT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.56 |
69.51 |
56 |
1000.00 |
7.14 |
71.43 |
0 |
91.07 |
0/1 |
| chr1 |
204497913 |
rs2169137 |
G |
C |
. |
PASS |
0.7965000 |
0.7161000 |
0.9504000 |
0.7396000 |
0.7382000 |
0.7935000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204501383 |
rs4252697 |
C |
T |
. |
PASS |
0.0590000 |
0.0893000 |
0.4018000 |
0.2207000 |
0.2301000 |
0.1981000 |
35.77 |
70.0 |
80 |
1000.00 |
7.56 |
48.75 |
0 |
48.75 |
0/1 |
| chr1 |
204512100 |
rs4252717 |
T |
C |
. |
PASS |
0.2073000 |
0.6095000 |
0.7024000 |
0.6879000 |
0.5961000 |
0.5351000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204515863 |
rs2290855 |
C |
T |
. |
PASS |
0.2148000 |
0.6095000 |
0.7024000 |
0.6879000 |
0.5941000 |
0.5367000 |
35.5 |
70.0 |
16 |
608.82 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204516025 |
rs2290854 |
A |
G |
. |
PASS |
0.2156000 |
0.6110000 |
0.7024000 |
0.6918000 |
0.6012000 |
0.5393000 |
36.0 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204518842 |
rs4245739 |
C |
A |
. |
PASS |
0.7685000 |
0.7147000 |
0.9504000 |
0.7396000 |
0.7382000 |
0.7859000 |
37.0 |
70.0 |
16 |
628.69 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204587047 |
rs11588857 |
G |
A |
. |
PASS |
0.0575000 |
0.0922000 |
0.3075000 |
0.2237000 |
0.2536000 |
0.1843000 |
36.43 |
69.52 |
89 |
1000.00 |
11.72 |
47.19 |
0 |
47.19 |
0/1 |
| chr1 |
204587240 |
rs3747632 |
G |
A |
. |
PASS |
0.0318000 |
0.5014000 |
0.3383000 |
0.4294000 |
0.3170000 |
0.2941000 |
36.83 |
70.0 |
119 |
1000.00 |
10.11 |
59.66 |
0 |
59.66 |
0/1 |
| chr1 |
204587569 |
rs3747631 |
G |
C |
. |
PASS |
0.0575000 |
0.0922000 |
0.3095000 |
0.2237000 |
0.2536000 |
0.1847000 |
37.0 |
70.0 |
121 |
1000.00 |
2.96 |
43.80 |
0 |
43.80 |
0/1 |
| chr1 |
204588140 |
rs3747630 |
G |
A |
. |
PASS |
0.0847000 |
0.1153000 |
0.3234000 |
0.2545000 |
0.2873000 |
0.2107000 |
36.59 |
70.0 |
147 |
1000.00 |
7.10 |
40.14 |
0 |
40.14 |
0/1 |
| chr1 |
204589101 |
rs3789044 |
G |
A |
. |
PASS |
0.0446000 |
0.0908000 |
0.3085000 |
0.2247000 |
0.2413000 |
0.1787000 |
36.59 |
70.0 |
52 |
1000.00 |
1.99 |
55.77 |
0 |
55.77 |
0/1 |
| chr1 |
204603026 |
rs7542085 |
C |
G |
. |
PASS |
0.4470000 |
0.5749000 |
0.3710000 |
0.4801000 |
0.4744000 |
0.4615000 |
36.57 |
70.0 |
110 |
1000.00 |
3.57 |
50.91 |
0 |
50.91 |
0/1 |
| chr1 |
204884821 |
rs10900431 |
T |
G |
. |
PASS |
0.1785000 |
0.4496000 |
0.4593000 |
0.1869000 |
0.2945000 |
0.2969000 |
37.0 |
70.0 |
72 |
1000.00 |
0.08 |
48.61 |
0 |
48.61 |
0/1 |
| chr1 |
204884836 |
rs10900432 |
T |
A |
. |
PASS |
0.4713000 |
0.6066000 |
0.4891000 |
0.4553000 |
0.3865000 |
0.4738000 |
35.54 |
70.0 |
79 |
1000.00 |
1.17 |
51.90 |
0 |
51.90 |
0/1 |
| chr1 |
204884871 |
rs10900433 |
G |
A |
. |
PASS |
0.1793000 |
0.4496000 |
0.4593000 |
0.1869000 |
0.2771000 |
0.2937000 |
36.43 |
70.0 |
78 |
1000.00 |
4.03 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
204921258 |
rs12141283 |
A |
G |
. |
PASS |
0.0711000 |
0.2983000 |
0.0794000 |
0.4493000 |
0.3896000 |
0.2424000 |
37.0 |
70.0 |
58 |
878.98 |
35.28 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
204924020 |
rs3795564 |
C |
T |
. |
PASS |
0.0000000 |
0.0043000 |
0.0089000 |
0.0089000 |
0.0102000 |
0.0061901 |
36.84 |
69.74 |
148 |
1000.00 |
1.21 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
204927037 |
rs72751470 |
T |
C |
. |
PASS |
0.0000000 |
0.0029000 |
0.0099000 |
0.0060000 |
0.0102000 |
0.0055910 |
37.0 |
70.0 |
13 |
262.56 |
9.62 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
204939899 |
rs11240319 |
T |
C |
. |
PASS |
0.2095000 |
0.0187000 |
0.0060000 |
0.0070000 |
0.0102000 |
0.0625000 |
37.0 |
70.0 |
31 |
459.01 |
4.61 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
204939917 |
rs6666095 |
G |
C |
. |
PASS |
0.2095000 |
0.0187000 |
0.0060000 |
0.0070000 |
0.0102000 |
0.0625000 |
37.0 |
70.0 |
23 |
270.08 |
1.93 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
204942697 |
rs72751493 |
G |
A |
. |
PASS |
0.0000000 |
0.0029000 |
0.0050000 |
0.0060000 |
0.0102000 |
0.0045927 |
35.0 |
70.0 |
10 |
176.04 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
204943285 |
rs2595945 |
A |
T |
. |
PASS |
0.7080000 |
0.9755000 |
0.9950000 |
0.9930000 |
0.9898000 |
0.9151000 |
35.36 |
70.0 |
49 |
698.81 |
13.91 |
44.90 |
0 |
44.90 |
0/1 |
| chr1 |
204943992 |
rs2794861 |
A |
G |
. |
PASS |
0.7534000 |
0.9813000 |
0.9950000 |
0.9930000 |
0.9898000 |
0.9279000 |
36.75 |
70.0 |
80 |
1000.00 |
0.83 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
204944441 |
rs56223230 |
G |
A |
. |
PASS |
0.0015000 |
0.0029000 |
0.0050000 |
0.0060000 |
0.0102000 |
0.0049920 |
36.54 |
70.0 |
91 |
1000.00 |
5.49 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
204944454 |
rs55969362 |
G |
A |
. |
PASS |
0.0000000 |
0.0029000 |
0.0050000 |
0.0060000 |
0.0102000 |
0.0045927 |
36.76 |
70.0 |
88 |
1000.00 |
5.66 |
55.68 |
0 |
55.68 |
0/1 |
| chr1 |
204944536 |
rs55778126 |
A |
G |
. |
PASS |
0.0000000 |
0.0029000 |
0.0050000 |
0.0060000 |
0.0102000 |
0.0045927 |
36.77 |
70.0 |
96 |
1000.00 |
3.21 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
204945746 |
rs6668366 |
G |
C |
. |
PASS |
0.2262000 |
0.0648000 |
0.0099000 |
0.0706000 |
0.0644000 |
0.0974000 |
37.0 |
70.0 |
12 |
94.34 |
16.67 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
204945814 |
rs55726173 |
C |
T |
. |
PASS |
0.0000000 |
0.0029000 |
0.0050000 |
0.0060000 |
0.0102000 |
0.0045927 |
35.84 |
69.35 |
57 |
1000.00 |
13.70 |
54.39 |
0 |
54.39 |
0/1 |
| chr1 |
204945934 |
rs6657372 |
A |
G |
. |
PASS |
0.2057000 |
0.0648000 |
0.0089000 |
0.0706000 |
0.0654000 |
0.0921000 |
36.66 |
70.0 |
125 |
1000.00 |
10.28 |
56.80 |
0 |
56.80 |
0/1 |
| chr1 |
204946764 |
rs6663324 |
T |
C |
. |
PASS |
0.2262000 |
0.0677000 |
0.0139000 |
0.0765000 |
0.0757000 |
0.1020000 |
36.6 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204948659 |
rs6667532 |
A |
G |
. |
PASS |
0.2050000 |
0.0692000 |
0.0139000 |
0.0775000 |
0.0767000 |
0.0970000 |
36.76 |
69.8 |
100 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204948735 |
rs6667633 |
A |
G |
. |
PASS |
0.2035000 |
0.0403000 |
0.0089000 |
0.0557000 |
0.0245000 |
0.0771000 |
36.73 |
69.55 |
88 |
1000.00 |
2.27 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
204949645 |
rs16854859 |
G |
A |
. |
PASS |
0.2481000 |
0.0461000 |
0.0089000 |
0.0557000 |
0.0245000 |
0.0897000 |
36.4 |
70.0 |
48 |
646.45 |
15.83 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
204951184 |
rs11302888 |
CT |
C |
. |
PASS |
0.2027000 |
0.0663000 |
0.0089000 |
0.0716000 |
0.0654000 |
0.0917000 |
36.47 |
70.0 |
70 |
1000.00 |
0.32 |
51.43 |
0 |
51.43 |
0/1 |
| chr1 |
204954993 |
rs2278795 |
A |
G |
. |
PASS |
0.4637000 |
0.2983000 |
0.2996000 |
0.3837000 |
0.3742000 |
0.3742000 |
36.08 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204960362 |
rs72753445 |
C |
T |
. |
PASS |
0.0000000 |
0.0029000 |
0.0050000 |
0.0060000 |
0.0112000 |
0.0047923 |
35.5 |
70.0 |
25 |
536.59 |
3.00 |
64.00 |
0 |
64.00 |
0/1 |
| chr1 |
204966428 |
rs2802808 |
C |
G |
. |
PASS |
0.2080000 |
0.2867000 |
0.4345000 |
0.2545000 |
0.3957000 |
0.3105000 |
36.54 |
69.85 |
131 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204966690 |
rs2794858 |
G |
A |
. |
PASS |
0.6634000 |
0.9726000 |
0.9990000 |
0.9801000 |
0.9898000 |
0.9012000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
204970243 |
rs4950976 |
A |
G |
. |
PASS |
0.1293000 |
0.1830000 |
0.2391000 |
0.2724000 |
0.3252000 |
0.2258000 |
36.71 |
70.0 |
68 |
1000.00 |
2.51 |
60.29 |
0 |
60.29 |
0/1 |
| chr1 |
204970302 |
rs4951151 |
T |
C |
. |
PASS |
0.1573000 |
0.1787000 |
0.2401000 |
0.2575000 |
0.3292000 |
0.2306000 |
35.3 |
70.0 |
178 |
1000.00 |
5.96 |
55.62 |
0 |
55.62 |
0/1 |
| chr1 |
204970495 |
rs4951152 |
C |
A |
. |
PASS |
0.1286000 |
0.1830000 |
0.2351000 |
0.2724000 |
0.2822000 |
0.2165000 |
37.0 |
70.0 |
16 |
165.84 |
25.00 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
204978533 |
rs1530745 |
A |
G |
. |
PASS |
0.6694000 |
0.5490000 |
0.4573000 |
0.7406000 |
0.7883000 |
0.6476000 |
37.0 |
70.0 |
10 |
62.74 |
0.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
205027561 |
rs9787409 |
G |
T |
. |
PASS |
0.1415000 |
0.2781000 |
0.4802000 |
0.1501000 |
0.4663000 |
0.2937000 |
36.0 |
70.0 |
65 |
1000.00 |
1.54 |
55.38 |
0 |
55.38 |
0/1 |
| chr1 |
205027737 |
rs2275697 |
G |
A |
. |
PASS |
0.1369000 |
0.2781000 |
0.4831000 |
0.1511000 |
0.4663000 |
0.2933000 |
35.81 |
70.0 |
136 |
1000.00 |
2.29 |
59.56 |
0 |
59.56 |
0/1 |
| chr1 |
205028823 |
rs5780262 |
A |
AG |
. |
PASS |
0.0325000 |
0.2522000 |
0.4593000 |
0.1133000 |
0.3006000 |
0.2175000 |
37.0 |
70.0 |
46 |
732.44 |
8.70 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
205028883 |
rs35182846 |
CAG |
C |
. |
PASS |
0.0719000 |
0.2925000 |
0.0526000 |
0.5050000 |
0.1656000 |
0.2039000 |
34.29 |
70.0 |
20 |
174.16 |
21.43 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
205031116 |
rs2229866 |
C |
T |
. |
PASS |
0.3230000 |
0.5591000 |
0.8760000 |
0.3390000 |
0.7372000 |
0.5511000 |
37.0 |
70.0 |
99 |
1000.00 |
9.53 |
46.46 |
0 |
46.46 |
0/1 |
| chr1 |
205031449 |
rs7545698 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205033374 |
rs2305277 |
T |
C |
. |
PASS |
0.3457000 |
0.5591000 |
0.8760000 |
0.3390000 |
0.7372000 |
0.5571000 |
37.0 |
70.0 |
21 |
447.33 |
14.65 |
61.90 |
0 |
61.90 |
0/1 |
| chr1 |
205034434 |
rs3901740 |
G |
T |
. |
PASS |
0.0129000 |
0.2493000 |
0.4573000 |
0.1133000 |
0.2975000 |
0.2109000 |
37.0 |
70.0 |
27 |
341.59 |
19.53 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
205034852 |
rs143128501,rs55993022 |
A |
ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC |
. |
PASS |
0.0719000 |
0.2911000 |
0.0526000 |
0.5020000 |
0.1636000 |
0.2027000 |
36.86 |
70.0 |
43 |
193.45 |
17.05 |
20.93 |
0 |
20.93 |
0/1 |
| chr1 |
205035455 |
rs16937 |
A |
G |
. |
PASS |
0.4501000 |
0.6196000 |
0.5774000 |
0.6759000 |
0.6462000 |
0.5829000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205038731 |
rs2305275 |
C |
T |
. |
PASS |
0.5008000 |
0.6167000 |
0.5010000 |
0.7097000 |
0.6063000 |
0.5795000 |
36.43 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205039288 |
rs12134724 |
T |
C |
. |
PASS |
0.0159000 |
0.2464000 |
0.0010000 |
0.4573000 |
0.1442000 |
0.1585000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205041015 |
rs11240349 |
G |
A |
. |
PASS |
0.0696000 |
0.2738000 |
0.0516000 |
0.4573000 |
0.1452000 |
0.1869000 |
34.0 |
70.0 |
12 |
429.73 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205052939 |
rs4950979 |
G |
A |
. |
PASS |
0.5008000 |
0.8718000 |
0.9762000 |
0.8400000 |
0.9243000 |
0.7987000 |
36.39 |
70.0 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205053219 |
rs4951168 |
C |
T |
. |
PASS |
0.5545000 |
0.8890000 |
0.9762000 |
0.8489000 |
0.9254000 |
0.8173000 |
37.0 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205063949 |
rs3738154 |
C |
T |
. |
PASS |
0.3548000 |
0.2752000 |
0.0903000 |
0.4533000 |
0.2280000 |
0.2855000 |
36.54 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205065733 |
rs11577406 |
G |
T |
. |
PASS |
0.1097000 |
0.2594000 |
0.0585000 |
0.4294000 |
0.0992000 |
0.1823000 |
35.59 |
70.0 |
17 |
646.44 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205074017 |
. |
ATG |
ACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205083865 |
rs11240360 |
T |
C |
. |
PASS |
0.0666000 |
0.2565000 |
0.0437000 |
0.4274000 |
0.0982000 |
0.1669000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205084120 |
rs7515178 |
G |
A |
. |
PASS |
0.3956000 |
0.2997000 |
0.0655000 |
0.4742000 |
0.2546000 |
0.3041000 |
36.48 |
70.0 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205090885 |
rs61822619 |
C |
G |
. |
PASS |
0.0666000 |
0.2565000 |
0.0437000 |
0.4274000 |
0.0982000 |
0.1669000 |
36.0 |
70.0 |
12 |
449.60 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205130413 |
rs3851294 |
A |
G |
. |
PASS |
0.9947000 |
0.9424000 |
1.0000000 |
0.8946000 |
0.9571000 |
0.9611000 |
36.13 |
70.0 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205210827 |
rs77588763 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
98 |
1000.00 |
5.56 |
36.73 |
0 |
36.73 |
0/1 |
| chr1 |
205225457 |
rs1172147 |
G |
A |
. |
PASS |
0.1059000 |
0.2176000 |
0.0565000 |
0.3807000 |
0.0808000 |
0.1617000 |
36.43 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205226288 |
rs1172113 |
T |
C |
. |
PASS |
0.1467000 |
0.2378000 |
0.1042000 |
0.3936000 |
0.1166000 |
0.1945000 |
36.7 |
69.51 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205228321 |
rs11344770 |
CT |
C |
. |
PASS |
0.1263000 |
0.2579000 |
0.1508000 |
0.4046000 |
0.1779000 |
0.2155000 |
35.59 |
70.0 |
18 |
599.74 |
1.96 |
94.44 |
0 |
94.44 |
1/1 |
| chr1 |
205228433 |
rs2307521 |
C |
CAG |
. |
PASS |
0.6271000 |
0.5720000 |
0.5417000 |
0.6233000 |
0.5082000 |
0.5783000 |
36.45 |
70.0 |
108 |
1000.00 |
1.00 |
99.07 |
0 |
100.00 |
1/1 |
| chr1 |
205238275 |
rs1768586 |
A |
G |
. |
PASS |
0.1036000 |
0.1902000 |
0.0516000 |
0.3549000 |
0.0736000 |
0.1498000 |
36.55 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205238530 |
rs1779411 |
C |
T |
. |
PASS |
0.0287000 |
0.1816000 |
0.0377000 |
0.3549000 |
0.0726000 |
0.1258000 |
36.76 |
69.73 |
148 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205239031 |
rs1668870 |
C |
G |
. |
PASS |
0.0310000 |
0.1830000 |
0.0377000 |
0.3539000 |
0.0726000 |
0.1264000 |
36.73 |
69.7 |
133 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205239121 |
rs1768585 |
C |
G |
. |
PASS |
0.7920000 |
0.5865000 |
0.5913000 |
0.6203000 |
0.6339000 |
0.6577000 |
36.27 |
69.59 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205239185 |
rs35344321,rs142934137 |
A |
AT |
. |
PASS |
0.0280000 |
0.1830000 |
0.0377000 |
0.3539000 |
0.0726000 |
0.1256000 |
37.0 |
70.0 |
13 |
491.94 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205240251 |
rs1668867 |
C |
T |
. |
PASS |
0.1483000 |
0.1931000 |
0.0516000 |
0.3549000 |
0.0736000 |
0.1619000 |
37.0 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205240913 |
rs9659978 |
A |
G |
. |
PASS |
0.9947000 |
0.9424000 |
1.0000000 |
0.8976000 |
0.9571000 |
0.9617000 |
36.04 |
70.0 |
25 |
984.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205272926 |
rs1106201 |
C |
T |
. |
PASS |
0.1399000 |
0.4150000 |
0.4603000 |
0.2962000 |
0.3916000 |
0.3231000 |
36.29 |
70.0 |
47 |
524.15 |
8.01 |
36.17 |
0 |
36.17 |
0/1 |
| chr1 |
205272983 |
rs1106202 |
C |
G |
. |
PASS |
0.1399000 |
0.4135000 |
0.4603000 |
0.2952000 |
0.3906000 |
0.3225000 |
37.0 |
70.0 |
42 |
588.83 |
1.59 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
205274174 |
rs10793728 |
A |
G |
. |
PASS |
0.6233000 |
0.7810000 |
0.4960000 |
0.7803000 |
0.5920000 |
0.6450000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205275421 |
rs4951197 |
A |
G |
. |
PASS |
0.9259000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9792000 |
36.72 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205290794 |
rs3738746 |
G |
A |
. |
PASS |
0.4879000 |
0.1974000 |
0.0913000 |
0.2972000 |
0.2853000 |
0.2899000 |
36.36 |
70.0 |
182 |
1000.00 |
2.06 |
51.65 |
0 |
51.65 |
0/1 |
| chr1 |
205290965 |
rs35321028 |
C |
T |
. |
PASS |
0.2708000 |
0.1354000 |
0.0268000 |
0.2773000 |
0.1708000 |
0.1847000 |
37.0 |
70.0 |
24 |
396.53 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
205307789 |
rs11240441 |
G |
A |
. |
PASS |
0.2020000 |
0.1095000 |
0.0268000 |
0.2704000 |
0.1380000 |
0.1552000 |
37.0 |
70.0 |
16 |
462.38 |
11.54 |
81.25 |
0 |
81.25 |
0/1 |
| chr1 |
205308335 |
rs1105385 |
G |
A |
. |
PASS |
0.2247000 |
0.1354000 |
0.0317000 |
0.2942000 |
0.2035000 |
0.1833000 |
36.68 |
70.0 |
75 |
1000.00 |
9.73 |
49.33 |
0 |
49.33 |
0/1 |
| chr1 |
205308368 |
rs1105387 |
C |
T |
. |
PASS |
0.2247000 |
0.1340000 |
0.0308000 |
0.2813000 |
0.2025000 |
0.1801000 |
36.59 |
70.0 |
111 |
1000.00 |
8.98 |
52.25 |
0 |
52.25 |
0/1 |
| chr1 |
205308591 |
rs1105388 |
C |
T |
. |
PASS |
0.2360000 |
0.1354000 |
0.0308000 |
0.2843000 |
0.2025000 |
0.1839000 |
36.0 |
70.0 |
20 |
396.56 |
6.67 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
205312280 |
rs7549293 |
C |
G |
. |
PASS |
0.6369000 |
0.5620000 |
0.6448000 |
0.5467000 |
0.7086000 |
0.6240000 |
37.0 |
70.0 |
35 |
1000.00 |
3.03 |
97.14 |
0 |
100.00 |
1/1 |
| chr1 |
205320370 |
rs12139589 |
A |
G |
. |
PASS |
0.1415000 |
0.1110000 |
0.2133000 |
0.2167000 |
0.3395000 |
0.2055000 |
37.0 |
69.8 |
29 |
89.09 |
42.76 |
17.24 |
0 |
17.24 |
0/1 |
| chr1 |
205320469 |
rs4951205 |
G |
A |
. |
PASS |
0.2148000 |
0.4265000 |
0.4722000 |
0.3191000 |
0.2781000 |
0.3293000 |
37.0 |
68.69 |
39 |
393.16 |
5.13 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
205385498 |
rs6688045 |
C |
T |
. |
PASS |
0.5272000 |
0.8746000 |
0.9990000 |
0.8330000 |
0.9284000 |
0.8101000 |
35.67 |
70.0 |
17 |
280.28 |
16.99 |
52.94 |
0 |
52.94 |
0/1 |
| chr1 |
205389653 |
rs72748911 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
35.74 |
68.95 |
35 |
631.80 |
4.21 |
54.29 |
0 |
54.29 |
0/1 |
| chr1 |
205492756 |
rs7529442 |
A |
G |
. |
PASS |
0.9531000 |
0.9352000 |
0.7659000 |
0.9642000 |
0.9847000 |
0.9213000 |
36.56 |
70.0 |
46 |
944.87 |
12.40 |
58.70 |
0 |
58.70 |
0/1 |
| chr1 |
205493545 |
rs41264889 |
C |
T |
. |
PASS |
0.0855000 |
0.1138000 |
0.1111000 |
0.0417000 |
0.0961000 |
0.0879000 |
36.0 |
68.33 |
28 |
372.49 |
23.81 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
205495392 |
rs2297837 |
A |
G |
. |
PASS |
0.8669000 |
0.9280000 |
0.7639000 |
0.9622000 |
0.9847000 |
0.8968000 |
37.0 |
70.0 |
28 |
635.12 |
11.90 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
205495976 |
rs1544154 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.38 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205555145 |
rs7531623 |
G |
A |
. |
PASS |
0.5189000 |
0.4654000 |
0.2143000 |
0.4235000 |
0.4519000 |
0.4179000 |
37.0 |
70.0 |
37 |
232.10 |
7.81 |
24.32 |
0 |
24.32 |
0/1 |
| chr1 |
205561494 |
. |
CTC |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
70.0 |
42 |
639.94 |
3.03 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
205561511 |
rs6593956 |
T |
A |
. |
PASS |
0.7496000 |
0.7882000 |
0.8998000 |
0.8231000 |
0.7372000 |
0.7975000 |
37.0 |
70.0 |
32 |
410.08 |
12.98 |
40.62 |
0 |
40.62 |
0/1 |
| chr1 |
205562202 |
rs7553871 |
G |
A |
. |
PASS |
0.4455000 |
0.6671000 |
0.7222000 |
0.7833000 |
0.6851000 |
0.6466000 |
36.48 |
69.13 |
46 |
777.78 |
4.35 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
205562324 |
rs4951244 |
C |
T |
. |
PASS |
0.0000000 |
0.0159000 |
0.0000000 |
0.0179000 |
0.0072000 |
0.0071885 |
37.0 |
70.0 |
13 |
179.02 |
15.38 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
205568213 |
rs2282449 |
C |
T |
. |
PASS |
0.1430000 |
0.3919000 |
0.6399000 |
0.1849000 |
0.4877000 |
0.3532000 |
36.0 |
70.0 |
49 |
798.51 |
13.95 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
205568390 |
rs2282450 |
T |
A |
. |
PASS |
0.4259000 |
0.4251000 |
0.6458000 |
0.2157000 |
0.5082000 |
0.4439000 |
35.4 |
69.33 |
52 |
1000.00 |
9.74 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
205568438 |
rs2282451 |
G |
T |
. |
PASS |
0.1536000 |
0.3948000 |
0.6399000 |
0.1859000 |
0.4611000 |
0.3514000 |
35.91 |
70.0 |
16 |
362.68 |
17.05 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
205589574 |
rs1064406 |
C |
T |
. |
PASS |
0.1460000 |
0.1153000 |
0.3700000 |
0.0706000 |
0.2699000 |
0.1959000 |
37.0 |
70.0 |
87 |
1000.00 |
5.08 |
43.68 |
0 |
43.68 |
0/1 |
| chr1 |
205594652 |
rs11240541 |
G |
C |
. |
PASS |
0.2239000 |
0.1311000 |
0.3819000 |
0.0994000 |
0.3088000 |
0.2344000 |
37.0 |
70.0 |
16 |
207.61 |
17.86 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
205595068 |
rs12048270 |
A |
G |
. |
PASS |
0.2239000 |
0.1311000 |
0.3819000 |
0.0994000 |
0.3088000 |
0.2344000 |
37.0 |
70.0 |
25 |
477.06 |
11.43 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
205633573 |
rs56927917 |
T |
C |
. |
PASS |
0.0772000 |
0.0115000 |
0.0357000 |
0.0109000 |
0.0736000 |
0.0457000 |
36.2 |
70.0 |
77 |
964.86 |
7.19 |
38.96 |
0 |
38.96 |
0/1 |
| chr1 |
205687348 |
. |
CTTTTTTCTTT |
CTTTTTTC |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
10 |
303.94 |
40.00 |
10.00 |
0 |
100.00 |
0/1 |
| chr1 |
205687348 |
rs71709139 |
CTTTTTTCTTT |
C |
. |
PASS |
0.1362000 |
0.2522000 |
0.0089000 |
0.4085000 |
0.1237000 |
0.1789000 |
37.0 |
70.0 |
10 |
303.94 |
4.44 |
90.00 |
0 |
100.00 |
0/1 |
| chr1 |
205689807 |
rs823094 |
T |
G |
. |
PASS |
0.1959000 |
0.2594000 |
0.0040000 |
0.4095000 |
0.1237000 |
0.1949000 |
37.0 |
70.0 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205739396 |
rs823139 |
T |
G |
. |
PASS |
0.4410000 |
0.7767000 |
0.8462000 |
0.8579000 |
0.7904000 |
0.7210000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205744138 |
rs708725 |
G |
T |
. |
PASS |
0.1437000 |
0.2565000 |
0.0030000 |
0.4056000 |
0.1196000 |
0.1789000 |
36.5 |
69.17 |
24 |
950.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205764640 |
rs823156 |
G |
A |
. |
PASS |
0.3381000 |
0.7464000 |
0.7550000 |
0.8101000 |
0.7260000 |
0.6492000 |
36.05 |
69.47 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205766159 |
rs5780304 |
CA |
C |
. |
PASS |
0.5250000 |
0.8026000 |
0.7560000 |
0.8738000 |
0.7495000 |
0.7238000 |
36.25 |
70.0 |
16 |
611.28 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205767885 |
rs708727 |
G |
A |
. |
PASS |
0.0227000 |
0.2291000 |
0.0030000 |
0.3966000 |
0.1196000 |
0.1414000 |
36.08 |
70.0 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205801872 |
rs1361754 |
A |
G |
. |
PASS |
0.3487000 |
0.3112000 |
0.0129000 |
0.5219000 |
0.2004000 |
0.2817000 |
37.0 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205814497 |
rs1891460 |
T |
C |
. |
PASS |
0.8744000 |
0.8386000 |
0.7411000 |
0.9344000 |
0.7914000 |
0.8385000 |
36.49 |
69.71 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
205887232 |
rs9438401 |
A |
T |
. |
PASS |
0.3033000 |
0.6571000 |
0.3442000 |
0.6531000 |
0.6115000 |
0.4910000 |
36.6 |
70.0 |
73 |
984.75 |
1.37 |
41.10 |
0 |
41.10 |
0/1 |
| chr1 |
205890679 |
rs12759719 |
T |
C |
. |
PASS |
0.9168000 |
0.9395000 |
0.8849000 |
0.8926000 |
0.9448000 |
0.9141000 |
37.0 |
70.0 |
47 |
494.39 |
2.39 |
34.04 |
0 |
34.04 |
0/1 |
| chr1 |
205896475 |
rs7366204 |
C |
T |
. |
PASS |
0.7867000 |
0.9236000 |
0.8879000 |
0.8897000 |
0.9090000 |
0.8706000 |
37.0 |
70.0 |
14 |
259.55 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
205896948 |
rs3811424 |
A |
G |
. |
PASS |
0.3843000 |
0.6657000 |
0.3810000 |
0.6581000 |
0.6196000 |
0.5236000 |
35.0 |
70.0 |
21 |
381.55 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
206145468 |
. |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.43 |
42.29 |
81 |
268.34 |
49.03 |
17.28 |
0 |
17.28 |
0/1 |
| chr1 |
206239403 |
rs28602496 |
C |
T |
. |
PASS |
0.1218000 |
0.0764000 |
0.0744000 |
0.0626000 |
0.1994000 |
0.1092000 |
36.29 |
70.0 |
52 |
509.10 |
13.35 |
32.69 |
0 |
32.69 |
0/1 |
| chr1 |
206239415 |
rs28639473 |
C |
T |
. |
PASS |
0.0106000 |
0.0634000 |
0.0744000 |
0.0626000 |
0.1994000 |
0.0781000 |
36.48 |
70.0 |
67 |
714.57 |
17.78 |
34.33 |
0 |
34.33 |
0/1 |
| chr1 |
206239574 |
rs28391411 |
T |
C |
. |
PASS |
0.4448000 |
0.1110000 |
0.0744000 |
0.0646000 |
0.1994000 |
0.1997000 |
36.4 |
70.0 |
52 |
634.42 |
6.92 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
206240271 |
rs28523378 |
G |
A |
. |
PASS |
0.3669000 |
0.2017000 |
0.0982000 |
0.0686000 |
0.2168000 |
0.2007000 |
37.0 |
70.0 |
21 |
238.49 |
11.90 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
206327510 |
rs61742539 |
T |
C |
. |
PASS |
0.3744000 |
0.1628000 |
0.0169000 |
0.2038000 |
0.0501000 |
0.1755000 |
37.0 |
70.0 |
38 |
646.79 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
206328647 |
rs28694519 |
G |
C |
. |
PASS |
0.6316000 |
0.1873000 |
0.0169000 |
0.2107000 |
0.0634000 |
0.2508000 |
37.0 |
70.0 |
42 |
755.91 |
3.46 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
206328803 |
rs41302235 |
T |
C |
. |
PASS |
0.3911000 |
0.1671000 |
0.0169000 |
0.2107000 |
0.0634000 |
0.1845000 |
36.08 |
70.0 |
122 |
1000.00 |
0.50 |
42.62 |
0 |
42.62 |
0/1 |
| chr1 |
206506599 |
rs200737698 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
17 |
208.75 |
5.04 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
206506763 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
18 |
205.75 |
77.78 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
206506805 |
rs141380001 |
C |
T |
. |
PASS |
0.8593000 |
0.9697000 |
0.9593000 |
0.9761000 |
0.9785000 |
0.9415000 |
36.5 |
61.96 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206513871 |
rs150293305 |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
63 |
520.21 |
11.11 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
206513892 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
70.0 |
46 |
109.47 |
38.51 |
15.22 |
0 |
15.22 |
0/1 |
| chr1 |
206513916 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
38 |
103.79 |
66.67 |
15.79 |
0 |
15.79 |
0/1 |
| chr1 |
206516159 |
rs199928990 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.14 |
16 |
211.76 |
12.50 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
206516261 |
rs201036189 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.02 |
61.67 |
99 |
1000.00 |
14.84 |
49.49 |
0 |
49.49 |
0/1 |
| chr1 |
206565975 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
24 |
183.53 |
0.00 |
29.17 |
0 |
29.17 |
0/1 |
| chr1 |
206566000 |
rs367700107 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
43 |
168.12 |
9.30 |
18.60 |
0 |
18.60 |
0/1 |
| chr1 |
206566195 |
rs200978831 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.39 |
62.75 |
763 |
1000.00 |
11.54 |
12.98 |
0 |
12.98 |
0/1 |
| chr1 |
206566333 |
. |
AGT |
AAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
70.0 |
60 |
550.84 |
60.00 |
5.00 |
0 |
35.00 |
0/1 |
| chr1 |
206566333 |
. |
AGT |
AAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
70.0 |
60 |
550.84 |
6.67 |
30.00 |
0 |
35.00 |
0/1 |
| chr1 |
206566687 |
rs2255806 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
55.5 |
11 |
101.50 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
206566904 |
rs2919105 |
T |
C |
. |
PASS |
0.4970000 |
0.4942000 |
0.4851000 |
0.4950000 |
0.5000000 |
0.4944000 |
36.45 |
60.61 |
545 |
1000.00 |
0.56 |
64.04 |
0 |
64.22 |
0/1 |
| chr1 |
206567084 |
rs75573336 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
68.67 |
237 |
1000.00 |
6.51 |
17.72 |
0 |
17.72 |
0/1 |
| chr1 |
206567100 |
rs2480377 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
67.63 |
163 |
1000.00 |
6.11 |
28.22 |
0 |
28.22 |
0/1 |
| chr1 |
206575128 |
rs201371659 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.64 |
55 |
257.31 |
10.91 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
206575141 |
rs77896938 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
64.22 |
40 |
582.84 |
5.00 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
206579798 |
rs200703951 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.44 |
27 |
638.13 |
14.81 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
206579936 |
rs201644221 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
46.06 |
85 |
1000.00 |
5.01 |
36.47 |
0 |
36.47 |
0/1 |
| chr1 |
206580084 |
rs143665212 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
52.76 |
29 |
586.18 |
0.00 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
206603535 |
rs2297539 |
G |
A |
. |
PASS |
0.4175000 |
0.5634000 |
0.7024000 |
0.4334000 |
0.5542000 |
0.5250000 |
35.91 |
70.0 |
44 |
730.02 |
9.09 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
206623685 |
rs12725078 |
G |
T |
. |
PASS |
0.4947000 |
0.5562000 |
0.3542000 |
0.7356000 |
0.7188000 |
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37.0 |
70.0 |
11 |
139.12 |
25.45 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
206623866 |
rs11809494 |
C |
T |
. |
PASS |
0.2829000 |
0.4006000 |
0.2708000 |
0.5268000 |
0.3937000 |
0.3674000 |
36.56 |
70.0 |
45 |
947.87 |
5.93 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
206623952 |
rs2483060 |
T |
C |
. |
PASS |
0.6044000 |
0.6095000 |
0.3562000 |
0.8091000 |
0.7301000 |
0.6208000 |
37.0 |
70.0 |
11 |
59.73 |
18.18 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
206626607 |
rs11120575 |
G |
A |
. |
PASS |
0.1989000 |
0.3948000 |
0.2708000 |
0.5338000 |
0.3947000 |
0.3460000 |
36.58 |
69.65 |
97 |
1000.00 |
5.68 |
58.76 |
0 |
58.76 |
0/1 |
| chr1 |
206626779 |
rs2483059 |
A |
G |
. |
PASS |
0.7859000 |
0.6297000 |
0.3552000 |
0.8151000 |
0.7290000 |
0.6723000 |
37.0 |
68.46 |
56 |
885.01 |
14.01 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
206626828 |
rs2483058 |
C |
G |
. |
PASS |
0.3079000 |
0.4481000 |
0.2808000 |
0.6143000 |
0.3620000 |
0.3940000 |
37.0 |
66.67 |
15 |
168.85 |
6.67 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
206628485 |
rs72752969 |
C |
G |
. |
PASS |
0.0030000 |
0.0202000 |
0.0000000 |
0.0537000 |
0.0020000 |
0.0147760 |
37.0 |
70.0 |
11 |
139.12 |
0.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
206634429 |
rs17018890 |
A |
G |
. |
PASS |
0.2466000 |
0.1700000 |
0.0675000 |
0.2406000 |
0.3016000 |
0.2095000 |
36.02 |
70.0 |
91 |
1000.00 |
0.00 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
206647742 |
rs1539242 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9994000 |
36.63 |
70.0 |
162 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206647787 |
rs1539243 |
T |
C |
. |
PASS |
0.8797000 |
0.9207000 |
0.9732000 |
0.8350000 |
0.8998000 |
0.8992000 |
36.66 |
70.0 |
140 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206648147 |
rs1953090 |
T |
G |
. |
PASS |
0.2610000 |
0.1830000 |
0.1260000 |
0.2594000 |
0.2883000 |
0.2280000 |
36.74 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206648378 |
rs1059704 |
G |
A |
. |
PASS |
0.3570000 |
0.5879000 |
0.3532000 |
0.6809000 |
0.6391000 |
0.5084000 |
37.0 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206650065 |
rs41296034 |
A |
G |
. |
PASS |
0.0038000 |
0.0202000 |
0.0000000 |
0.0686000 |
0.0020000 |
0.0179710 |
36.82 |
70.0 |
142 |
1000.00 |
2.90 |
47.18 |
0 |
47.18 |
0/1 |
| chr1 |
206651107 |
rs2297545 |
G |
A |
. |
PASS |
0.1558000 |
0.4020000 |
0.6131000 |
0.2286000 |
0.2526000 |
0.3155000 |
37.0 |
70.0 |
49 |
571.91 |
3.85 |
36.73 |
0 |
36.73 |
0/1 |
| chr1 |
206651725 |
rs17433909 |
C |
T |
. |
PASS |
0.0038000 |
0.0144000 |
0.0000000 |
0.0596000 |
0.0061000 |
0.0161740 |
36.57 |
69.29 |
58 |
950.51 |
2.22 |
48.28 |
0 |
48.28 |
0/1 |
| chr1 |
206667441 |
rs2184030 |
G |
A |
. |
PASS |
0.2678000 |
0.4035000 |
0.3155000 |
0.4761000 |
0.5194000 |
0.3692000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206680983 |
rs2095124 |
A |
C |
. |
PASS |
0.9955000 |
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1.0000000 |
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0.9537000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206766857 |
. |
CGT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.83 |
70.0 |
17 |
144.41 |
19.61 |
35.29 |
0 |
35.29 |
0/1 |
| chr1 |
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rs6662929 |
A |
G |
. |
PASS |
0.9992000 |
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1.0000000 |
1.0000000 |
0.9998000 |
36.68 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
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rs17013232 |
G |
T |
. |
PASS |
0.0015000 |
0.0058000 |
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0.0139000 |
0.0061000 |
0.0051917 |
36.65 |
70.0 |
57 |
1000.00 |
0.62 |
59.65 |
0 |
59.65 |
0/1 |
| chr1 |
206902471 |
rs45514798 |
G |
A |
. |
PASS |
0.0076000 |
0.1023000 |
0.0010000 |
0.1610000 |
0.0511000 |
0.0587000 |
36.34 |
69.78 |
91 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206944112 |
rs3024492 |
T |
A |
. |
PASS |
0.0129000 |
0.1455000 |
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0.2217000 |
0.0736000 |
0.0829000 |
37.0 |
70.0 |
11 |
97.35 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
206944233 |
rs1554286 |
A |
G |
. |
PASS |
0.5688000 |
0.6931000 |
0.3393000 |
0.8151000 |
0.5818000 |
0.5919000 |
36.72 |
70.0 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
206944645 |
rs1518111 |
T |
C |
. |
PASS |
0.5658000 |
0.6715000 |
0.3244000 |
0.7793000 |
0.5573000 |
0.5731000 |
35.86 |
69.52 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
207009910 |
rs2243170 |
T |
C |
. |
PASS |
0.6762000 |
0.8617000 |
0.7976000 |
0.9185000 |
0.9264000 |
0.8239000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
207014472 |
rs2243188 |
A |
C |
. |
PASS |
0.5582000 |
0.6455000 |
0.4058000 |
0.7594000 |
0.7311000 |
0.6138000 |
37.0 |
70.0 |
40 |
511.30 |
5.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
207015957 |
rs2243191 |
T |
C |
. |
PASS |
0.8185000 |
0.6729000 |
0.3363000 |
0.7724000 |
0.7209000 |
0.6729000 |
36.4 |
70.0 |
39 |
673.54 |
7.44 |
51.28 |
0 |
51.28 |
0/1 |
| chr1 |
207072959 |
rs1150255 |
C |
T |
. |
PASS |
0.2685000 |
0.4380000 |
0.2123000 |
0.4533000 |
0.2280000 |
0.3099000 |
35.67 |
70.0 |
14 |
289.31 |
7.94 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
207074905 |
rs1150258 |
T |
C |
. |
PASS |
0.2905000 |
0.4380000 |
0.2123000 |
0.4533000 |
0.2280000 |
0.3157000 |
37.0 |
70.0 |
62 |
908.71 |
4.66 |
43.55 |
0 |
43.55 |
0/1 |
| chr1 |
207078331 |
rs56268528 |
C |
T |
. |
PASS |
0.0008000 |
0.0029000 |
0.0000000 |
0.0040000 |
0.0010000 |
0.0015974 |
37.0 |
70.0 |
32 |
539.54 |
18.75 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
207081654 |
rs1713231 |
A |
G |
. |
PASS |
0.2065000 |
0.3098000 |
0.1349000 |
0.4533000 |
0.1963000 |
0.2540000 |
34.0 |
69.5 |
10 |
92.50 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
207087053 |
rs72758947 |
A |
G |
. |
PASS |
0.0507000 |
0.1239000 |
0.1657000 |
0.1133000 |
0.1176000 |
0.1096000 |
36.0 |
70.0 |
17 |
405.59 |
7.84 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
207087435 |
rs167082 |
C |
T |
. |
PASS |
0.1717000 |
0.3069000 |
0.1339000 |
0.4543000 |
0.1953000 |
0.2442000 |
35.96 |
70.0 |
48 |
759.76 |
5.07 |
47.92 |
0 |
47.92 |
0/1 |
| chr1 |
207109116 |
rs2275531 |
C |
T |
. |
PASS |
0.1944000 |
0.3271000 |
0.3284000 |
0.4563000 |
0.2147000 |
0.2963000 |
35.86 |
70.0 |
52 |
664.18 |
2.75 |
40.38 |
0 |
40.38 |
0/1 |
| chr1 |
207109167 |
rs6695632 |
G |
A |
. |
PASS |
0.1596000 |
0.3242000 |
0.3284000 |
0.4563000 |
0.2147000 |
0.2867000 |
37.0 |
70.0 |
29 |
423.25 |
1.06 |
44.83 |
0 |
44.83 |
0/1 |
| chr1 |
207110363 |
rs748140 |
A |
G |
. |
PASS |
0.1929000 |
0.3199000 |
0.3294000 |
0.4423000 |
0.2106000 |
0.2915000 |
35.67 |
70.0 |
15 |
286.30 |
17.78 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
207110936 |
rs291096 |
T |
C |
. |
PASS |
0.9319000 |
0.5115000 |
0.4474000 |
0.4682000 |
0.2556000 |
0.5509000 |
35.91 |
70.0 |
63 |
672.83 |
6.20 |
34.92 |
0 |
34.92 |
0/1 |
| chr1 |
207111257 |
rs291095 |
G |
T |
. |
PASS |
0.9849000 |
0.6282000 |
0.5556000 |
0.6302000 |
0.6452000 |
0.7115000 |
37.0 |
70.0 |
10 |
100.36 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
207113755 |
rs2007272 |
G |
C |
. |
PASS |
0.1861000 |
0.3199000 |
0.3294000 |
0.4423000 |
0.2106000 |
0.2897000 |
36.2 |
70.0 |
24 |
505.69 |
11.67 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
207135546 |
rs1572808 |
G |
A |
. |
PASS |
0.6596000 |
0.3487000 |
0.0645000 |
0.3022000 |
0.1687000 |
0.3291000 |
37.0 |
69.05 |
48 |
700.23 |
2.38 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
207143422 |
rs1856746 |
A |
G |
. |
PASS |
0.9319000 |
0.5101000 |
0.4425000 |
0.4702000 |
0.2556000 |
0.5501000 |
36.72 |
69.53 |
98 |
1000.00 |
0.85 |
43.88 |
0 |
43.88 |
0/1 |
| chr1 |
207195779 |
rs2842726 |
A |
G |
. |
PASS |
0.9985000 |
0.9914000 |
1.0000000 |
0.9891000 |
0.9949000 |
0.9952000 |
36.68 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
207235954 |
rs2075863 |
G |
A |
. |
PASS |
0.2027000 |
0.2522000 |
0.1657000 |
0.4155000 |
0.2648000 |
0.2570000 |
36.08 |
70.0 |
28 |
414.25 |
7.69 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
207237233 |
. |
G |
GGGGTGTGTGTGTGTGTGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
70.0 |
24 |
204.87 |
0.00 |
25.00 |
0 |
33.33 |
0/1 |
| chr1 |
207238419 |
rs72741390 |
C |
T |
. |
PASS |
0.0257000 |
0.1542000 |
0.0079000 |
0.2753000 |
0.1319000 |
0.1108000 |
35.97 |
70.0 |
71 |
1000.00 |
4.35 |
49.30 |
0 |
49.30 |
0/1 |
| chr1 |
207243851 |
rs923109 |
A |
G |
. |
PASS |
0.9584000 |
0.8271000 |
0.9921000 |
0.7306000 |
0.8354000 |
0.8772000 |
35.8 |
70.0 |
40 |
658.52 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
207269919 |
rs8942 |
C |
T |
. |
PASS |
0.8850000 |
0.2867000 |
0.1617000 |
0.1769000 |
0.2474000 |
0.3898000 |
36.6 |
70.0 |
77 |
976.87 |
5.37 |
38.96 |
0 |
38.96 |
0/1 |
| chr1 |
207286381 |
rs55867570 |
C |
A |
. |
PASS |
0.0030000 |
0.0994000 |
0.0030000 |
0.0249000 |
0.0746000 |
0.0347000 |
36.62 |
70.0 |
57 |
1000.00 |
6.03 |
56.14 |
0 |
56.14 |
0/1 |
| chr1 |
207288897 |
rs12031629 |
T |
C |
. |
PASS |
0.2398000 |
0.5187000 |
0.5714000 |
0.5606000 |
0.4755000 |
0.4557000 |
35.29 |
70.0 |
26 |
450.04 |
7.69 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
207297680 |
rs1126618 |
T |
C |
. |
PASS |
0.9198000 |
0.8646000 |
0.7639000 |
0.8290000 |
0.8957000 |
0.8578000 |
36.57 |
69.64 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
207300070 |
rs45574833 |
G |
A |
. |
PASS |
0.0000000 |
0.0029000 |
0.0010000 |
0.0109000 |
0.0010000 |
0.0029952 |
37.0 |
70.0 |
48 |
1000.00 |
1.39 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
207300259 |
rs2491393 |
A |
G |
. |
PASS |
0.6006000 |
0.4308000 |
0.2679000 |
0.3728000 |
0.3845000 |
0.4221000 |
35.8 |
70.0 |
31 |
279.91 |
38.06 |
32.26 |
0 |
32.26 |
0/1 |
| chr1 |
207304900 |
rs4844573 |
T |
C |
. |
PASS |
0.8374000 |
0.4625000 |
0.2679000 |
0.3767000 |
0.3845000 |
0.4898000 |
36.12 |
70.0 |
75 |
1000.00 |
7.35 |
54.67 |
0 |
54.67 |
0/1 |
| chr1 |
207500293 |
rs4844591 |
C |
T |
. |
PASS |
0.6959000 |
0.7032000 |
0.4107000 |
0.7445000 |
0.5532000 |
0.6214000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
207504669 |
rs2184476 |
G |
A |
. |
PASS |
0.6967000 |
0.7032000 |
0.4107000 |
0.7435000 |
0.5532000 |
0.6214000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
207510596 |
rs10746463 |
G |
A |
. |
PASS |
0.6967000 |
0.7032000 |
0.4107000 |
0.7445000 |
0.5532000 |
0.6216000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
207527285 |
rs11120753 |
G |
A |
. |
PASS |
0.3608000 |
0.1888000 |
0.0595000 |
0.2704000 |
0.1687000 |
0.2206000 |
34.6 |
70.0 |
14 |
122.24 |
48.57 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
207532861 |
. |
C |
CTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
70.0 |
29 |
700.82 |
11.03 |
34.48 |
0 |
72.41 |
0/1 |
| chr1 |
207548626 |
rs6664477 |
C |
T |
. |
PASS |
0.3759000 |
0.4582000 |
0.4177000 |
0.5050000 |
0.5286000 |
0.4515000 |
37.0 |
70.0 |
21 |
238.49 |
29.76 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
207653364 |
rs17618 |
A |
G |
. |
PASS |
0.0643000 |
0.0562000 |
0.0020000 |
0.0716000 |
0.0491000 |
0.0491000 |
37.0 |
70.0 |
98 |
1000.00 |
8.33 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
207653395 |
rs17617 |
C |
A |
. |
PASS |
0.9962000 |
0.9121000 |
1.0000000 |
0.8370000 |
0.9427000 |
0.9429000 |
36.25 |
70.0 |
103 |
1000.00 |
1.54 |
46.60 |
0 |
46.60 |
0/1 |
| chr1 |
207679307 |
rs4844600 |
A |
G |
. |
PASS |
0.9523000 |
0.9078000 |
0.6488000 |
0.8111000 |
0.9202000 |
0.8504000 |
36.8 |
69.26 |
123 |
1000.00 |
0.77 |
49.59 |
0 |
49.59 |
0/1 |
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0/1 |
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TC |
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1/1 |
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1/1 |
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1/1 |
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0 |
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1/1 |
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100.00 |
0 |
100.00 |
1/1 |
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51 |
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100.00 |
0 |
100.00 |
1/1 |
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T |
C |
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100.00 |
0 |
100.00 |
1/1 |
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C |
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37.0 |
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32 |
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100.00 |
0 |
100.00 |
1/1 |
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210006438 |
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C |
T |
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0.6074000 |
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100.00 |
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100.00 |
1/1 |
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C |
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1/1 |
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1/1 |
| chr1 |
210008374 |
rs41274838 |
C |
T |
. |
PASS |
0.0514000 |
0.1988000 |
0.0823000 |
0.2058000 |
0.1227000 |
0.1230000 |
36.43 |
70.0 |
21 |
829.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
210015568 |
rs10570454,rs35511439 |
GCT |
G |
. |
PASS |
0.8200000 |
0.7406000 |
0.8016000 |
0.7515000 |
0.7597000 |
0.7798000 |
36.76 |
70.0 |
25 |
867.90 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
210205999 |
rs34354853 |
T |
TA |
. |
PASS |
0.4841000 |
0.5115000 |
0.5575000 |
0.3867000 |
0.4172000 |
0.4700000 |
36.0 |
70.0 |
20 |
772.32 |
1.11 |
90.00 |
0 |
100.00 |
1/1 |
| chr1 |
210206084 |
rs142719944 |
C |
CTGT |
. |
PASS |
0.8298000 |
0.5360000 |
0.5714000 |
0.4195000 |
0.4530000 |
0.5811000 |
35.4 |
70.0 |
11 |
272.75 |
16.16 |
81.82 |
0 |
81.82 |
0/1 |
| chr1 |
210267893 |
rs2307890,rs144713062 |
TGAA |
T |
. |
PASS |
0.0098000 |
0.0677000 |
0.0655000 |
0.1421000 |
0.1329000 |
0.0797000 |
34.31 |
70.0 |
33 |
489.96 |
28.03 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
210273886 |
rs2494187 |
A |
T |
. |
PASS |
0.0083000 |
0.0677000 |
0.0486000 |
0.1392000 |
0.1258000 |
0.0739000 |
37.0 |
70.0 |
10 |
225.68 |
8.57 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
210334081 |
rs17188183 |
T |
C |
. |
PASS |
0.0121000 |
0.0677000 |
0.0486000 |
0.1402000 |
0.1268000 |
0.0753000 |
37.0 |
70.0 |
31 |
667.86 |
14.26 |
61.29 |
0 |
61.29 |
0/1 |
| chr1 |
210439986 |
. |
C |
CAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
14 |
279.73 |
21.43 |
28.57 |
0 |
64.29 |
0/1 |
| chr1 |
210536278 |
rs11119469 |
C |
A |
. |
PASS |
0.0318000 |
0.0908000 |
0.0020000 |
0.1402000 |
0.1115000 |
0.0713000 |
36.29 |
70.0 |
32 |
565.15 |
12.87 |
53.12 |
0 |
53.12 |
0/1 |
| chr1 |
210536387 |
rs11119470 |
T |
C |
. |
PASS |
0.0318000 |
0.0908000 |
0.0020000 |
0.1402000 |
0.1217000 |
0.0733000 |
37.0 |
70.0 |
11 |
59.73 |
18.18 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
210554987 |
rs910027 |
A |
G |
. |
PASS |
0.3033000 |
0.5259000 |
0.4603000 |
0.3976000 |
0.4622000 |
0.4157000 |
37.0 |
70.0 |
67 |
684.83 |
1.36 |
32.84 |
0 |
32.84 |
0/1 |
| chr1 |
210577831 |
rs34772809 |
C |
T |
. |
PASS |
0.0348000 |
0.1110000 |
0.0020000 |
0.1789000 |
0.1033000 |
0.0811000 |
35.55 |
70.0 |
76 |
1000.00 |
0.16 |
43.42 |
0 |
43.42 |
0/1 |
| chr1 |
210577873 |
rs2066721 |
G |
C |
. |
PASS |
0.8517000 |
0.8444000 |
0.6280000 |
0.7634000 |
0.7086000 |
0.7600000 |
36.64 |
70.0 |
101 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
210577901 |
rs34228541 |
T |
C |
. |
PASS |
0.0340000 |
0.1110000 |
0.0020000 |
0.1789000 |
0.1033000 |
0.0809000 |
36.49 |
70.0 |
96 |
1000.00 |
4.30 |
48.96 |
0 |
48.96 |
0/1 |
| chr1 |
210591742 |
rs3215542 |
TG |
T |
. |
PASS |
0.4592000 |
0.6383000 |
0.7163000 |
0.5984000 |
0.7055000 |
0.6118000 |
36.19 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
210761462 |
rs4297293 |
G |
C |
. |
PASS |
0.8207000 |
0.9841000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9499000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
210857261 |
rs72751436 |
C |
T |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0005990 |
37.0 |
69.62 |
110 |
1000.00 |
3.43 |
47.27 |
0 |
47.27 |
0/1 |
| chr1 |
211032696 |
rs4951669 |
C |
G |
. |
PASS |
0.8472000 |
0.5965000 |
0.3849000 |
0.6421000 |
0.4519000 |
0.6010000 |
35.91 |
70.0 |
26 |
332.59 |
11.89 |
42.31 |
0 |
42.31 |
0/1 |
| chr1 |
211032756 |
rs61848964 |
T |
A |
. |
PASS |
0.0015000 |
0.0072000 |
0.0000000 |
0.0239000 |
0.0041000 |
0.0069888 |
36.6 |
69.23 |
61 |
1000.00 |
1.42 |
49.18 |
0 |
49.18 |
0/1 |
| chr1 |
211033278 |
rs4951670 |
T |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.52 |
69.78 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211033317 |
rs4951484 |
G |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.66 |
69.82 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211033368 |
rs4951671 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.48 |
69.97 |
69 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211033413 |
rs4951672 |
T |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.11 |
69.48 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211033442 |
rs4951485 |
A |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
35.96 |
69.39 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211033446 |
rs4951673 |
G |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.5 |
69.42 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211033457 |
rs55659105 |
TG |
T |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.1 |
69.32 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211034143 |
rs4951674 |
T |
G |
. |
PASS |
0.8782000 |
0.7104000 |
0.8393000 |
0.8469000 |
0.7710000 |
0.8199000 |
37.0 |
69.77 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211192707 |
rs11119658 |
G |
A |
. |
PASS |
0.6271000 |
0.3213000 |
0.0873000 |
0.3718000 |
0.2894000 |
0.3588000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211280519 |
rs72741104 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0031000 |
0.0007987 |
37.0 |
70.0 |
35 |
446.96 |
2.86 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
211447625 |
rs11580084 |
G |
A |
. |
PASS |
0.1475000 |
0.5764000 |
0.6171000 |
0.5994000 |
0.4744000 |
0.4561000 |
37.0 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211452529 |
rs10708960 |
TA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.33 |
70.0 |
16 |
516.36 |
4.17 |
93.75 |
0 |
93.75 |
1/1 |
| chr1 |
211452678 |
rs3767377 |
G |
A |
. |
PASS |
0.1475000 |
0.5764000 |
0.6200000 |
0.5994000 |
0.4744000 |
0.4567000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211452728 |
rs3767378 |
G |
A |
. |
PASS |
0.1475000 |
0.5764000 |
0.6200000 |
0.5994000 |
0.4744000 |
0.4567000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211590892 |
rs1877476 |
A |
G |
. |
PASS |
0.6989000 |
0.9582000 |
1.0000000 |
0.9682000 |
0.9867000 |
0.9058000 |
36.54 |
69.94 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211591135 |
rs1707247 |
T |
C |
. |
PASS |
0.8313000 |
0.9654000 |
1.0000000 |
0.9672000 |
0.9867000 |
0.9415000 |
36.85 |
69.76 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
211682187 |
rs12409763 |
T |
C |
. |
PASS |
0.4206000 |
0.4986000 |
0.6091000 |
0.4771000 |
0.4673000 |
0.4898000 |
36.5 |
70.0 |
144 |
1000.00 |
8.33 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
211834039 |
rs1822568 |
G |
C |
. |
PASS |
0.7973000 |
0.6830000 |
0.5377000 |
0.7575000 |
0.6789000 |
0.6981000 |
37.0 |
69.5 |
11 |
97.35 |
9.09 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
211836752 |
rs56354171 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.2 |
70.0 |
36 |
473.72 |
2.22 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
211846876 |
rs701929 |
A |
G |
. |
PASS |
0.5454000 |
0.6671000 |
0.7252000 |
0.4732000 |
0.6431000 |
0.6030000 |
36.11 |
69.81 |
62 |
884.69 |
15.29 |
43.55 |
0 |
43.55 |
0/1 |
| chr1 |
212030216 |
rs28778433 |
C |
G |
. |
PASS |
0.9864000 |
0.9928000 |
1.0000000 |
0.9583000 |
0.9652000 |
0.9802000 |
35.88 |
68.86 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212142054 |
rs11322485 |
GA |
G |
. |
PASS |
0.3132000 |
0.3934000 |
0.4028000 |
0.4314000 |
0.4141000 |
0.3858000 |
34.97 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212209367 |
rs3215984 |
T |
TC |
. |
PASS |
0.0461000 |
0.2709000 |
0.2589000 |
0.4264000 |
0.3691000 |
0.2596000 |
37.0 |
70.0 |
22 |
595.81 |
3.21 |
77.27 |
0 |
77.27 |
0/1 |
| chr1 |
212215819 |
rs3010023 |
G |
A |
. |
PASS |
0.4705000 |
0.4856000 |
0.4018000 |
0.6054000 |
0.5429000 |
0.5000000 |
37.0 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212217971 |
rs35704923 |
C |
CTT |
. |
PASS |
0.5045000 |
0.5331000 |
0.4246000 |
0.6690000 |
0.6237000 |
0.5487000 |
34.67 |
70.0 |
20 |
722.28 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212220847 |
rs2970592 |
G |
A |
. |
PASS |
0.4682000 |
0.4856000 |
0.4018000 |
0.6054000 |
0.5409000 |
0.4990000 |
37.0 |
69.17 |
24 |
967.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212224946 |
rs113106720 |
G |
T |
. |
PASS |
0.0439000 |
0.2709000 |
0.2599000 |
0.4225000 |
0.3691000 |
0.2584000 |
37.0 |
50.67 |
14 |
171.86 |
4.76 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
212236157 |
rs4951436 |
G |
T |
. |
PASS |
0.8578000 |
0.9870000 |
0.9980000 |
0.9374000 |
0.9550000 |
0.9389000 |
37.0 |
70.0 |
24 |
962.86 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212241714 |
rs71854563,rs35528691 |
T |
TAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
24 |
309.17 |
14.29 |
29.17 |
0 |
45.83 |
0/1 |
| chr1 |
212273606 |
rs35137676 |
G |
A |
. |
PASS |
0.0015000 |
0.0245000 |
0.0000000 |
0.0308000 |
0.0020000 |
0.0103830 |
36.72 |
70.0 |
72 |
1000.00 |
1.36 |
59.72 |
0 |
59.72 |
0/1 |
| chr1 |
212273639 |
rs3135474 |
C |
T |
. |
PASS |
0.9115000 |
0.9957000 |
1.0000000 |
0.9592000 |
0.9571000 |
0.9595000 |
36.6 |
70.0 |
89 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212274413 |
rs6540718 |
A |
C |
. |
PASS |
1.0000000 |
0.9971000 |
1.0000000 |
0.9891000 |
0.9959000 |
0.9966000 |
36.8 |
69.67 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212530192 |
rs792439 |
T |
C |
. |
PASS |
0.9970000 |
0.9899000 |
1.0000000 |
0.9791000 |
0.9990000 |
0.9934000 |
36.0 |
70.0 |
12 |
453.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212539342 |
rs3767864 |
C |
T |
. |
PASS |
0.4213000 |
0.5677000 |
0.3800000 |
0.5676000 |
0.6370000 |
0.5048000 |
37.0 |
70.0 |
76 |
1000.00 |
3.03 |
43.42 |
0 |
43.42 |
0/1 |
| chr1 |
212551139 |
rs71573837,rs34228270 |
G |
GCA |
. |
PASS |
0.0303000 |
0.1931000 |
0.0972000 |
0.2008000 |
0.3211000 |
0.1573000 |
37.0 |
70.0 |
16 |
141.39 |
8.33 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
212560327 |
rs792449 |
A |
G |
. |
PASS |
0.9970000 |
0.9899000 |
1.0000000 |
0.9811000 |
0.9990000 |
0.9938000 |
36.37 |
70.0 |
95 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212617860 |
rs145109984,rs57220444,rs71907583 |
CGTGT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
30.17 |
70.0 |
23 |
307.93 |
52.17 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
212798977 |
rs3122712 |
A |
G |
. |
PASS |
0.4554000 |
0.1960000 |
0.0804000 |
0.2634000 |
0.1871000 |
0.2530000 |
36.5 |
70.0 |
56 |
789.47 |
11.90 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
212799870 |
rs3122713 |
A |
G |
. |
PASS |
0.7731000 |
0.7550000 |
0.6796000 |
0.8410000 |
0.8691000 |
0.7841000 |
36.31 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212799949 |
rs3795842 |
C |
T |
. |
PASS |
0.3359000 |
0.3156000 |
0.4514000 |
0.6451000 |
0.6769000 |
0.4850000 |
36.03 |
70.0 |
68 |
1000.00 |
0.72 |
54.41 |
0 |
54.41 |
0/1 |
| chr1 |
212900434 |
rs3835160 |
C |
CG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
70.0 |
55 |
556.01 |
3.44 |
34.55 |
0 |
34.55 |
0/1 |
| chr1 |
212900487 |
rs2244935 |
A |
G |
. |
PASS |
0.9070000 |
0.9611000 |
0.8938000 |
0.9155000 |
0.8885000 |
0.9099000 |
36.49 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
212911836 |
rs15702 |
T |
C |
. |
PASS |
0.6513000 |
0.4438000 |
0.5308000 |
0.6859000 |
0.6626000 |
0.6074000 |
36.48 |
70.0 |
54 |
753.70 |
1.77 |
42.59 |
0 |
42.59 |
0/1 |
| chr1 |
212925904 |
rs11308975 |
TA |
T |
. |
PASS |
0.5537000 |
0.4352000 |
0.5308000 |
0.6839000 |
0.6626000 |
0.5801000 |
37.0 |
70.0 |
30 |
285.37 |
13.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
212960866 |
rs3738800 |
C |
T |
. |
PASS |
0.0242000 |
0.4769000 |
0.3631000 |
0.1710000 |
0.2086000 |
0.2206000 |
35.5 |
70.0 |
24 |
217.45 |
33.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
213009469 |
rs10864004 |
A |
G |
. |
PASS |
0.7943000 |
0.4640000 |
0.5407000 |
0.7366000 |
0.6646000 |
0.6605000 |
36.4 |
70.0 |
59 |
613.35 |
4.75 |
33.90 |
0 |
33.90 |
0/1 |
| chr1 |
213037310 |
rs3768548 |
T |
C |
. |
PASS |
0.1732000 |
0.4942000 |
0.4484000 |
0.1909000 |
0.2260000 |
0.2869000 |
37.0 |
70.0 |
16 |
337.07 |
0.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
213046236 |
rs1890932 |
G |
A |
. |
PASS |
0.1732000 |
0.4942000 |
0.4415000 |
0.1909000 |
0.2270000 |
0.2857000 |
33.4 |
70.0 |
17 |
298.04 |
4.71 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
213056819 |
rs2644547 |
A |
G |
. |
PASS |
0.9856000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9962000 |
36.38 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
213061362 |
rs2291772 |
T |
A |
. |
PASS |
0.1732000 |
0.4942000 |
0.4415000 |
0.1869000 |
0.2260000 |
0.2847000 |
36.29 |
70.0 |
42 |
535.05 |
1.12 |
40.48 |
0 |
40.48 |
0/1 |
| chr1 |
213062017 |
rs112024320 |
T |
TTTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.74 |
70.0 |
24 |
586.54 |
5.39 |
70.83 |
0 |
75.00 |
0/1 |
| chr1 |
213068404 |
rs17019870 |
T |
C |
. |
PASS |
0.1702000 |
0.4914000 |
0.4454000 |
0.1879000 |
0.2249000 |
0.2843000 |
37.0 |
70.0 |
23 |
316.00 |
35.65 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
213068436 |
rs17019873 |
A |
G |
. |
PASS |
0.1702000 |
0.4914000 |
0.4454000 |
0.1879000 |
0.2249000 |
0.2843000 |
37.0 |
70.0 |
21 |
322.03 |
25.71 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
213068456 |
rs41258314 |
T |
A |
. |
PASS |
0.0008000 |
0.0029000 |
0.0000000 |
0.0109000 |
0.0020000 |
0.0031949 |
37.0 |
70.0 |
17 |
246.37 |
17.65 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
213068542 |
rs146462077 |
C |
CTGAT |
. |
PASS |
0.1710000 |
0.4914000 |
0.4454000 |
0.1879000 |
0.2270000 |
0.2849000 |
36.7 |
70.0 |
18 |
225.93 |
11.11 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
213124871 |
rs3123305 |
G |
A |
. |
PASS |
0.0605000 |
0.2378000 |
0.4028000 |
0.4384000 |
0.4407000 |
0.3041000 |
35.71 |
70.0 |
42 |
974.66 |
7.14 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
213139748 |
rs3738805 |
T |
G |
. |
PASS |
0.6536000 |
0.5058000 |
0.6171000 |
0.5895000 |
0.6350000 |
0.6092000 |
37.0 |
70.0 |
17 |
670.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
213178340 |
rs11120076 |
G |
A |
. |
PASS |
0.0439000 |
0.3732000 |
0.5258000 |
0.6461000 |
0.5890000 |
0.4139000 |
36.25 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
213180440 |
. |
AG |
AGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
37 |
100.79 |
12.29 |
59.46 |
1 |
86.49 |
0/1 |
| chr1 |
213180441 |
rs116147385 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.14 |
70.0 |
40 |
100.79 |
135.00 |
15.00 |
1 |
17.50 |
0/1 |
| chr1 |
213210301 |
rs11120080 |
T |
G |
. |
PASS |
0.6331000 |
0.4265000 |
0.5347000 |
0.6869000 |
0.6401000 |
0.5968000 |
37.0 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
213224719 |
rs4951476 |
T |
C |
. |
PASS |
0.9002000 |
0.5735000 |
0.6161000 |
0.7197000 |
0.6973000 |
0.7218000 |
36.4 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
213405414 |
rs11271079 |
GGCAACTGAGGAT |
G |
. |
PASS |
0.8835000 |
0.5706000 |
0.6171000 |
0.7197000 |
0.6973000 |
0.7173000 |
37.0 |
70.0 |
12 |
456.20 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
213590504 |
rs12037929 |
G |
A |
. |
PASS |
0.3374000 |
0.5778000 |
0.5446000 |
0.5179000 |
0.3947000 |
0.4599000 |
36.06 |
70.0 |
115 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
214156165 |
rs9970073 |
G |
A |
. |
PASS |
0.6793000 |
0.3963000 |
0.3968000 |
0.4076000 |
0.3753000 |
0.4692000 |
36.06 |
69.83 |
115 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
214478459 |
rs6540819 |
G |
A |
. |
PASS |
0.7110000 |
0.4236000 |
0.6200000 |
0.4692000 |
0.5665000 |
0.5761000 |
37.0 |
70.0 |
10 |
104.51 |
30.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
214492286 |
rs1134647 |
G |
A |
. |
PASS |
0.9962000 |
0.7550000 |
0.6230000 |
0.9076000 |
0.7955000 |
0.8307000 |
36.61 |
70.0 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
214503489 |
rs2291830 |
T |
G |
. |
PASS |
0.5189000 |
0.4553000 |
0.6200000 |
0.5895000 |
0.6074000 |
0.5619000 |
36.6 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
214505640 |
rs35345210 |
A |
G |
. |
PASS |
0.0068000 |
0.1182000 |
0.0853000 |
0.1511000 |
0.1033000 |
0.0859000 |
36.2 |
70.0 |
30 |
491.78 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
214538109 |
. |
AG |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
29.0 |
70.0 |
12 |
56.90 |
33.33 |
33.33 |
1 |
33.33 |
0/1 |
| chr1 |
214538109 |
. |
AGTGT |
AGTGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
12 |
56.90 |
33.33 |
8.33 |
1 |
41.67 |
0/1 |
| chr1 |
214538109 |
rs71732304 |
AGTGT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
29.0 |
70.0 |
12 |
56.90 |
33.33 |
33.33 |
1 |
41.67 |
0/1 |
| chr1 |
214538110 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
29.0 |
70.0 |
12 |
56.91 |
33.33 |
33.33 |
1 |
33.33 |
0/1 |
| chr1 |
214538111 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
29.0 |
70.0 |
11 |
59.91 |
36.36 |
36.36 |
1 |
36.36 |
0/1 |
| chr1 |
214538112 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
30.6 |
70.0 |
11 |
62.92 |
36.36 |
36.36 |
1 |
45.45 |
0/1 |
| chr1 |
214576354 |
rs55788513 |
T |
C |
. |
PASS |
0.0023000 |
0.0346000 |
0.0000000 |
0.0676000 |
0.0307000 |
0.0250000 |
37.0 |
70.0 |
12 |
98.49 |
33.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
214637882 |
rs7528315 |
A |
G |
. |
PASS |
0.9206000 |
0.8141000 |
0.7847000 |
0.7992000 |
0.7771000 |
0.8261000 |
35.67 |
70.0 |
18 |
692.36 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
214638172 |
rs10864100 |
C |
T |
. |
PASS |
0.9206000 |
0.8141000 |
0.7847000 |
0.7992000 |
0.7771000 |
0.8261000 |
36.08 |
69.62 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
214656066 |
rs77576710 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.25 |
14 |
92.47 |
42.86 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
214656070 |
rs12740343 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.67 |
65.0 |
13 |
292.33 |
20.51 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
214656164 |
rs58782956 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
66.25 |
56 |
583.62 |
64.29 |
33.93 |
0 |
35.71 |
0/1 |
| chr1 |
214656254 |
rs74797197 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
63.0 |
47 |
482.38 |
5.85 |
34.04 |
0 |
34.04 |
0/1 |
| chr1 |
214656259 |
rs77987889 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.5 |
63.0 |
47 |
470.37 |
1.60 |
34.04 |
0 |
34.04 |
0/1 |
| chr1 |
214656266 |
. |
CCA |
CTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.0 |
49 |
500.41 |
2.55 |
32.65 |
0 |
32.65 |
0/1 |
| chr1 |
214656277 |
rs79052802 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.56 |
46 |
576.79 |
4.83 |
39.13 |
0 |
39.13 |
0/1 |
| chr1 |
214656298 |
rs55872127 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
66.29 |
46 |
694.24 |
14.29 |
45.65 |
0 |
45.65 |
0/1 |
| chr1 |
214656333 |
rs75490133 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.18 |
69.27 |
58 |
1000.00 |
6.48 |
56.90 |
0 |
56.90 |
0/1 |
| chr1 |
214656359 |
rs57780679 |
T |
TC |
. |
PASS |
0.9970000 |
0.9438000 |
1.0000000 |
0.9324000 |
0.9928000 |
0.9764000 |
36.7 |
69.43 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
214656362 |
rs79153607 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.45 |
78 |
1000.00 |
13.64 |
56.41 |
0 |
56.41 |
0/1 |
| chr1 |
214656378 |
rs75388246 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.78 |
69.54 |
89 |
1000.00 |
12.23 |
60.67 |
0 |
60.67 |
0/1 |
| chr1 |
214656413 |
rs74407488 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
69.7 |
110 |
1000.00 |
9.90 |
69.09 |
0 |
69.09 |
0/1 |
| chr1 |
214656439 |
rs112508752,rs3840048 |
CTAA |
C |
. |
PASS |
0.0227000 |
0.0648000 |
0.0119000 |
0.1461000 |
0.1084000 |
0.0679000 |
36.38 |
68.17 |
114 |
814.19 |
5.08 |
25.44 |
0 |
25.44 |
0/1 |
| chr1 |
214656464 |
rs75275552 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
68.97 |
119 |
1000.00 |
8.90 |
63.03 |
0 |
63.03 |
0/1 |
| chr1 |
214656466 |
rs61745824 |
C |
G |
. |
PASS |
0.3994000 |
0.3689000 |
0.3095000 |
0.3121000 |
0.3599000 |
0.3518000 |
36.01 |
68.95 |
118 |
1000.00 |
11.54 |
61.86 |
0 |
61.86 |
0/1 |
| chr1 |
214656500 |
rs76083445 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
68.95 |
121 |
1000.00 |
10.45 |
61.16 |
0 |
61.16 |
0/1 |
| chr1 |
214656525 |
. |
GTG |
GCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
68.87 |
125 |
1000.00 |
1.83 |
56.00 |
0 |
56.00 |
0/1 |
| chr1 |
214656575 |
rs74142715 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.81 |
69.67 |
173 |
1000.00 |
6.30 |
52.60 |
0 |
52.60 |
0/1 |
| chr1 |
214656606 |
rs77432910 |
CTCTT |
C |
. |
PASS |
0.5000000 |
0.4885000 |
0.4762000 |
0.4911000 |
0.4969000 |
0.4912000 |
36.17 |
69.58 |
232 |
1000.00 |
0.86 |
48.28 |
0 |
48.28 |
0/1 |
| chr1 |
214656667 |
. |
GGC |
GCT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.84 |
69.31 |
215 |
1000.00 |
1.37 |
43.26 |
0 |
43.26 |
0/1 |
| chr1 |
214656697 |
rs3795525 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
69.96 |
163 |
1000.00 |
6.85 |
30.67 |
0 |
30.67 |
0/1 |
| chr1 |
214656740 |
rs78564084 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
68.05 |
81 |
547.13 |
16.79 |
24.69 |
0 |
24.69 |
0/1 |
| chr1 |
214656762 |
rs77163514 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.78 |
49 |
191.83 |
36.73 |
18.37 |
0 |
18.37 |
0/1 |
| chr1 |
214656775 |
rs369404345 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.67 |
34 |
115.82 |
35.29 |
17.65 |
0 |
17.65 |
0/1 |
| chr1 |
214787130 |
rs2070064 |
G |
A |
. |
PASS |
0.0522000 |
0.3156000 |
0.1210000 |
0.4990000 |
0.2771000 |
0.2362000 |
36.45 |
70.0 |
47 |
733.00 |
0.39 |
46.81 |
0 |
46.81 |
0/1 |
| chr1 |
214814571 |
rs3795521 |
C |
T |
. |
PASS |
0.0522000 |
0.3170000 |
0.1220000 |
0.4990000 |
0.2894000 |
0.2390000 |
35.5 |
70.0 |
34 |
509.51 |
4.41 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
214820099 |
rs3748697 |
A |
G |
. |
PASS |
0.0522000 |
0.3127000 |
0.1220000 |
0.4831000 |
0.2883000 |
0.2350000 |
34.6 |
68.67 |
27 |
476.79 |
5.93 |
55.56 |
0 |
55.56 |
0/1 |
| chr1 |
214826196 |
rs335524 |
G |
A |
. |
PASS |
0.2874000 |
0.5893000 |
0.8849000 |
0.4443000 |
0.6973000 |
0.5611000 |
36.08 |
70.0 |
27 |
417.26 |
19.37 |
48.15 |
0 |
48.15 |
0/1 |
| chr1 |
214826364 |
rs335523 |
G |
A |
. |
PASS |
0.2852000 |
0.5504000 |
0.8393000 |
0.4503000 |
0.6524000 |
0.5383000 |
37.0 |
70.0 |
11 |
268.58 |
18.18 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
214828812 |
rs435043 |
A |
G |
. |
PASS |
0.7867000 |
0.6657000 |
0.8879000 |
0.5616000 |
0.7423000 |
0.7364000 |
37.0 |
70.0 |
21 |
280.25 |
19.05 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
214830592 |
rs72759668 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.62 |
70.0 |
54 |
1000.00 |
3.94 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
214830617 |
rs438034 |
A |
G |
. |
PASS |
0.3540000 |
0.6383000 |
0.8879000 |
0.5606000 |
0.7434000 |
0.6184000 |
37.0 |
70.0 |
45 |
542.18 |
5.23 |
37.78 |
0 |
37.78 |
0/1 |
| chr1 |
214837110 |
rs7289 |
C |
G |
. |
PASS |
0.3775000 |
0.6772000 |
0.8889000 |
0.5606000 |
0.7474000 |
0.6310000 |
36.23 |
70.0 |
71 |
1000.00 |
9.90 |
43.66 |
0 |
43.66 |
0/1 |
| chr1 |
215043734 |
rs10399859 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.0 |
68.67 |
10 |
277.48 |
6.67 |
90.00 |
0 |
90.00 |
0/1 |
| chr1 |
215043797 |
rs6662371 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.67 |
36 |
109.80 |
11.11 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
215043884 |
rs6662483 |
T |
C |
. |
PASS |
0.4191000 |
0.7464000 |
0.6637000 |
0.7346000 |
0.5930000 |
0.6110000 |
37.0 |
63.7 |
70 |
1000.00 |
9.44 |
47.14 |
0 |
47.14 |
0/1 |
| chr1 |
215043890 |
rs9919169 |
G |
C |
. |
PASS |
0.1664000 |
0.0504000 |
0.2212000 |
0.0507000 |
0.2117000 |
0.1470000 |
37.0 |
69.55 |
75 |
1000.00 |
9.00 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
215043925 |
rs6686227 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.69 |
50 |
903.07 |
7.69 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
215154797 |
rs6681013 |
C |
G |
. |
PASS |
0.5643000 |
0.5490000 |
0.3333000 |
0.5507000 |
0.6595000 |
0.5315000 |
36.51 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
215345263 |
rs3834061,rs71868745,rs71167811 |
GTCTCTC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
17 |
446.80 |
6.33 |
76.47 |
0 |
76.47 |
0/1 |
| chr1 |
215368514 |
rs1556907 |
A |
G |
. |
PASS |
0.2534000 |
0.3300000 |
0.3452000 |
0.4254000 |
0.6002000 |
0.3848000 |
37.0 |
70.0 |
16 |
128.23 |
22.50 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
215753355 |
rs11803705 |
T |
G |
. |
PASS |
0.0439000 |
0.2363000 |
0.4444000 |
0.2992000 |
0.5215000 |
0.2957000 |
36.62 |
70.0 |
69 |
1000.00 |
2.36 |
46.38 |
0 |
46.38 |
0/1 |
| chr1 |
215781574 |
rs3767255 |
A |
G |
. |
PASS |
0.0681000 |
0.2421000 |
0.4415000 |
0.3062000 |
0.5164000 |
0.3027000 |
34.0 |
70.0 |
16 |
229.51 |
12.50 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
215793834 |
rs14137 |
G |
A |
. |
PASS |
0.2867000 |
0.6124000 |
0.3492000 |
0.6372000 |
0.2843000 |
0.4143000 |
36.2 |
70.0 |
34 |
479.74 |
5.10 |
44.12 |
0 |
44.12 |
0/1 |
| chr1 |
215844373 |
rs45549044 |
C |
T |
. |
PASS |
0.0000000 |
0.0043000 |
0.0000000 |
0.0070000 |
0.0010000 |
0.0021965 |
37.0 |
70.0 |
74 |
1000.00 |
10.33 |
60.81 |
0 |
60.81 |
0/1 |
| chr1 |
215848587 |
rs2797234 |
T |
C |
. |
PASS |
0.1793000 |
0.4539000 |
0.3155000 |
0.3738000 |
0.2781000 |
0.3031000 |
36.25 |
70.0 |
44 |
491.42 |
17.05 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
215848641 |
rs2797235 |
T |
C |
. |
PASS |
0.6127000 |
0.7954000 |
0.6429000 |
0.8091000 |
0.6442000 |
0.6897000 |
36.44 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
215880177 |
rs7546433 |
A |
G |
. |
PASS |
0.4713000 |
0.6369000 |
0.5685000 |
0.6630000 |
0.5194000 |
0.5617000 |
35.74 |
70.0 |
19 |
734.13 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
215914646 |
rs6694510 |
T |
A |
. |
PASS |
0.2300000 |
0.4035000 |
0.3938000 |
0.2425000 |
0.1708000 |
0.2780000 |
37.0 |
70.0 |
13 |
216.64 |
17.58 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
215914826 |
rs35309576 |
T |
C |
. |
PASS |
0.2027000 |
0.1960000 |
0.0843000 |
0.2356000 |
0.0736000 |
0.1593000 |
36.66 |
70.0 |
53 |
1000.00 |
8.73 |
66.04 |
0 |
66.04 |
0/1 |
| chr1 |
215916563 |
rs11120616 |
G |
A |
. |
PASS |
0.1490000 |
0.1931000 |
0.0843000 |
0.2346000 |
0.0736000 |
0.1446000 |
35.15 |
70.0 |
86 |
1000.00 |
1.61 |
45.35 |
0 |
45.35 |
0/1 |
| chr1 |
215960167 |
rs10864198 |
T |
G |
. |
PASS |
0.7057000 |
0.4899000 |
0.6518000 |
0.5358000 |
0.4898000 |
0.5887000 |
36.6 |
70.0 |
64 |
1000.00 |
17.29 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
216172380 |
rs10864219 |
A |
G |
. |
PASS |
0.4206000 |
0.6513000 |
0.8343000 |
0.4970000 |
0.6370000 |
0.5935000 |
37.0 |
70.0 |
57 |
798.45 |
6.14 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
216197083 |
rs17025886 |
G |
C |
. |
PASS |
0.4652000 |
0.1686000 |
0.2044000 |
0.2137000 |
0.3313000 |
0.2949000 |
37.0 |
70.0 |
22 |
440.18 |
10.49 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
216197115 |
rs10082132 |
A |
G |
. |
PASS |
0.3245000 |
0.6383000 |
0.6845000 |
0.4573000 |
0.4131000 |
0.4844000 |
35.67 |
70.0 |
24 |
259.22 |
30.56 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
216219781 |
rs6657250 |
A |
G |
. |
PASS |
0.7965000 |
0.4669000 |
0.4544000 |
0.6551000 |
0.5000000 |
0.5956000 |
37.0 |
70.0 |
27 |
262.20 |
14.81 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
216246675 |
rs35944387 |
AG |
A |
. |
PASS |
0.7398000 |
0.7954000 |
0.9454000 |
0.7117000 |
0.7607000 |
0.7873000 |
36.78 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
216258251 |
rs72746307 |
T |
C |
. |
PASS |
0.0008000 |
0.0029000 |
0.0000000 |
0.0040000 |
0.0020000 |
0.0017971 |
36.14 |
70.0 |
31 |
446.99 |
13.36 |
45.16 |
0 |
45.16 |
0/1 |
| chr1 |
216348764 |
rs1805049 |
C |
T |
. |
PASS |
0.5537000 |
0.7017000 |
0.7788000 |
0.6143000 |
0.7106000 |
0.6623000 |
36.28 |
69.76 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
216390694 |
rs1324330 |
C |
T |
. |
PASS |
0.2950000 |
0.6844000 |
0.7738000 |
0.6083000 |
0.7004000 |
0.5875000 |
36.08 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
216592003 |
rs4253963 |
T |
C |
. |
PASS |
0.4531000 |
0.6614000 |
0.8175000 |
0.6640000 |
0.6329000 |
0.6328000 |
36.5 |
70.0 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
216595306 |
rs10779261 |
C |
T |
. |
PASS |
0.7640000 |
0.7089000 |
0.8125000 |
0.7326000 |
0.7710000 |
0.7612000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
216674316 |
rs6689872 |
T |
A |
. |
PASS |
0.5560000 |
0.4092000 |
0.6240000 |
0.3211000 |
0.3865000 |
0.4690000 |
36.23 |
69.35 |
66 |
1000.00 |
9.68 |
46.97 |
0 |
46.97 |
0/1 |
| chr1 |
216692669 |
rs945453 |
C |
T |
. |
PASS |
0.7330000 |
0.6354000 |
0.7381000 |
0.4344000 |
0.5900000 |
0.6326000 |
37.0 |
70.0 |
74 |
997.91 |
4.14 |
40.54 |
0 |
40.54 |
0/1 |
| chr1 |
216741314 |
rs11572766 |
C |
T |
. |
PASS |
0.0076000 |
0.0965000 |
0.0030000 |
0.1978000 |
0.1442000 |
0.0839000 |
33.73 |
70.0 |
27 |
309.71 |
8.75 |
40.74 |
0 |
40.74 |
0/1 |
| chr1 |
216886276 |
rs2789717 |
G |
A |
. |
PASS |
0.4380000 |
0.5447000 |
0.5427000 |
0.4344000 |
0.5910000 |
0.5030000 |
36.71 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
217207089 |
rs4846806 |
C |
T |
. |
PASS |
0.5507000 |
0.5288000 |
0.4712000 |
0.3777000 |
0.5634000 |
0.4994000 |
36.5 |
70.0 |
63 |
768.39 |
7.54 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
217604777 |
rs7520483 |
G |
A |
. |
PASS |
0.3442000 |
0.2277000 |
0.0863000 |
0.3121000 |
0.2730000 |
0.2558000 |
36.4 |
70.0 |
43 |
661.50 |
4.19 |
46.51 |
0 |
46.51 |
0/1 |
| chr1 |
217671771 |
rs724803 |
C |
G |
. |
PASS |
0.1422000 |
0.3084000 |
0.1567000 |
0.3072000 |
0.2689000 |
0.2260000 |
35.59 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
217784431 |
rs145143662 |
A |
AC |
. |
PASS |
0.0900000 |
0.0303000 |
0.0010000 |
0.0437000 |
0.0450000 |
0.0457000 |
34.43 |
70.0 |
47 |
359.25 |
20.29 |
27.66 |
0 |
29.79 |
0/1 |
| chr1 |
217856787 |
rs71301099 |
A |
AT |
. |
PASS |
0.0772000 |
0.1960000 |
0.0992000 |
0.3559000 |
0.1667000 |
0.1715000 |
37.0 |
70.0 |
12 |
82.91 |
16.67 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
217947738 |
rs6604561 |
G |
A |
. |
PASS |
0.6861000 |
0.6801000 |
0.7292000 |
0.8101000 |
0.7270000 |
0.7268000 |
35.74 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
217971889 |
rs12047387 |
G |
A |
. |
PASS |
0.0234000 |
0.1902000 |
0.4812000 |
0.1928000 |
0.3978000 |
0.2458000 |
34.6 |
70.0 |
15 |
119.22 |
13.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
217971980 |
rs7532704 |
C |
T |
. |
PASS |
0.4478000 |
0.3386000 |
0.6022000 |
0.3817000 |
0.5429000 |
0.4690000 |
36.1 |
69.7 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
217971993 |
rs6604562 |
A |
G |
. |
PASS |
0.5915000 |
0.3530000 |
0.6081000 |
0.3817000 |
0.5440000 |
0.5104000 |
36.68 |
69.73 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
217974998 |
rs17676037 |
A |
T |
. |
PASS |
0.0068000 |
0.0317000 |
0.0010000 |
0.0378000 |
0.0215000 |
0.0181710 |
37.0 |
70.0 |
13 |
258.41 |
11.54 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
218023820 |
rs34846382 |
C |
CA |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.18 |
69.98 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
218218833 |
rs10465668 |
C |
T |
. |
PASS |
0.3222000 |
0.6772000 |
0.5873000 |
0.5964000 |
0.6380000 |
0.5415000 |
35.0 |
70.0 |
42 |
556.95 |
12.70 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
218564881 |
rs947712 |
C |
T |
. |
PASS |
0.5242000 |
0.4928000 |
0.5427000 |
0.3449000 |
0.5235000 |
0.4874000 |
35.88 |
70.0 |
65 |
1000.00 |
7.60 |
49.23 |
0 |
49.23 |
0/1 |
| chr1 |
218578726 |
rs142802402 |
ACT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.06 |
70.0 |
30 |
507.98 |
15.83 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
219249108 |
rs1256642 |
C |
T |
. |
PASS |
0.6770000 |
0.5807000 |
0.6974000 |
0.3310000 |
0.4059000 |
0.5453000 |
34.88 |
70.0 |
42 |
515.18 |
8.12 |
40.48 |
0 |
40.48 |
0/1 |
| chr1 |
219366400 |
rs35359058 |
T |
TGG |
. |
PASS |
0.7632000 |
0.7651000 |
0.6438000 |
0.7823000 |
0.7127000 |
0.7334000 |
37.0 |
70.0 |
19 |
730.55 |
21.05 |
21.05 |
0 |
100.00 |
0/1 |
| chr1 |
219366400 |
rs35359058,rs60036848 |
T |
TG |
. |
PASS |
0.7632000 |
0.7651000 |
0.6438000 |
0.7823000 |
0.7127000 |
0.7334000 |
36.25 |
70.0 |
19 |
730.55 |
7.52 |
73.68 |
0 |
100.00 |
0/1 |
| chr1 |
219383848 |
rs5781096,rs3087015 |
A |
ACTTTTT |
. |
PASS |
0.8563000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9615000 |
36.4 |
70.0 |
15 |
530.46 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
219383867 |
rs940571 |
T |
C |
. |
PASS |
0.8517000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9603000 |
36.33 |
68.89 |
18 |
704.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
219383905 |
rs940570 |
A |
G |
. |
PASS |
0.8631000 |
0.9957000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9633000 |
36.52 |
69.2 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
219783279 |
rs79789352 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.68 |
55.8 |
169 |
1000.00 |
3.98 |
67.46 |
0 |
67.46 |
0/1 |
| chr1 |
219783709 |
rs368783050 |
G |
A |
. |
PASS |
0.0923000 |
0.2896000 |
0.6726000 |
0.4006000 |
0.5010000 |
0.3782000 |
36.0 |
46.0 |
39 |
339.38 |
33.33 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
219784636 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
49.8 |
59 |
195.65 |
52.54 |
16.95 |
0 |
16.95 |
0/1 |
| chr1 |
219859210 |
rs1572504 |
C |
T |
. |
PASS |
0.4221000 |
0.1974000 |
0.2024000 |
0.2266000 |
0.3037000 |
0.2843000 |
37.0 |
70.0 |
42 |
718.29 |
4.76 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
220089352 |
rs2231734 |
A |
C |
. |
PASS |
0.1362000 |
0.2478000 |
0.4107000 |
0.3857000 |
0.3180000 |
0.2925000 |
37.0 |
70.0 |
10 |
142.13 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
220142023 |
rs1061248 |
C |
T |
. |
PASS |
0.3873000 |
0.3674000 |
0.5804000 |
0.4960000 |
0.5470000 |
0.4764000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220142070 |
rs1061242 |
C |
T |
. |
PASS |
0.3865000 |
0.3674000 |
0.5804000 |
0.4960000 |
0.5470000 |
0.4762000 |
35.71 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220145371 |
rs2795315 |
T |
G |
. |
PASS |
0.9902000 |
0.8256000 |
0.9216000 |
0.8121000 |
0.8487000 |
0.8902000 |
36.43 |
70.0 |
21 |
825.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220151808 |
rs3215088 |
C |
CAA |
. |
PASS |
0.3865000 |
0.3674000 |
0.5804000 |
0.5010000 |
0.5470000 |
0.4772000 |
37.0 |
70.0 |
15 |
556.46 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220154246 |
rs35193743 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.57 |
70.0 |
23 |
859.63 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220154602 |
rs1694599 |
T |
C |
. |
PASS |
0.8003000 |
0.8026000 |
0.9216000 |
0.8111000 |
0.8476000 |
0.8365000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220154659 |
. |
TAA |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.39 |
70.0 |
43 |
1000.00 |
2.95 |
95.35 |
0 |
95.35 |
1/1 |
| chr1 |
220156090 |
rs2647462 |
T |
C |
. |
PASS |
0.7995000 |
0.8040000 |
0.9216000 |
0.8111000 |
0.8476000 |
0.8365000 |
37.0 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220160433 |
rs2647434 |
A |
G |
. |
PASS |
0.9902000 |
0.8732000 |
0.9474000 |
0.7952000 |
0.8354000 |
0.8960000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220161859 |
rs2291838 |
C |
G |
. |
PASS |
0.3744000 |
0.1988000 |
0.3651000 |
0.1252000 |
0.2321000 |
0.2704000 |
37.0 |
70.0 |
11 |
55.58 |
0.00 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
220162195 |
rs2254494 |
T |
C |
. |
PASS |
0.3971000 |
0.6427000 |
0.5804000 |
0.6660000 |
0.5930000 |
0.5603000 |
34.0 |
70.0 |
24 |
205.44 |
33.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
220165162 |
rs1694577 |
T |
C |
. |
PASS |
0.3971000 |
0.6427000 |
0.5823000 |
0.6660000 |
0.5920000 |
0.5605000 |
37.0 |
70.0 |
44 |
628.73 |
2.39 |
43.18 |
0 |
43.18 |
0/1 |
| chr1 |
220165166 |
rs3767669 |
T |
C |
. |
PASS |
0.3540000 |
0.1974000 |
0.3631000 |
0.1252000 |
0.2352000 |
0.2650000 |
36.5 |
70.0 |
44 |
825.57 |
1.52 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
220178717 |
rs5781162 |
T |
TA |
. |
PASS |
0.9902000 |
0.8732000 |
0.9395000 |
0.7932000 |
0.8609000 |
0.8990000 |
36.4 |
70.0 |
17 |
659.02 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220179322 |
rs2647420 |
A |
T |
. |
PASS |
0.7504000 |
0.8444000 |
0.9375000 |
0.7893000 |
0.8497000 |
0.8283000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220184150 |
rs34170326 |
CA |
C |
. |
PASS |
0.7905000 |
0.8890000 |
0.9077000 |
0.8529000 |
0.8978000 |
0.8612000 |
37.0 |
70.0 |
11 |
342.85 |
0.00 |
90.91 |
0 |
90.91 |
0/1 |
| chr1 |
220192495 |
rs2245457 |
C |
G |
. |
PASS |
0.9902000 |
0.8732000 |
0.9395000 |
0.7932000 |
0.8609000 |
0.8990000 |
37.0 |
70.0 |
23 |
921.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220197545 |
rs2577159 |
C |
T |
. |
PASS |
0.7511000 |
0.8444000 |
0.9375000 |
0.7893000 |
0.8497000 |
0.8285000 |
34.82 |
70.0 |
11 |
399.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220197625 |
rs2230301 |
G |
T |
. |
PASS |
0.9902000 |
0.8732000 |
0.9395000 |
0.7932000 |
0.8609000 |
0.8990000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220205943 |
rs2789816 |
G |
A |
. |
PASS |
0.7504000 |
0.8444000 |
0.9375000 |
0.7893000 |
0.8497000 |
0.8283000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220205980 |
rs2577138 |
A |
C |
. |
PASS |
0.7504000 |
0.8444000 |
0.9385000 |
0.7893000 |
0.8497000 |
0.8285000 |
35.91 |
68.18 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220207017 |
rs2647456 |
C |
T |
. |
PASS |
0.9902000 |
0.8732000 |
0.9405000 |
0.7932000 |
0.8609000 |
0.8992000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220307676 |
rs35775533 |
A |
G |
. |
PASS |
0.0015000 |
0.0591000 |
0.0010000 |
0.0895000 |
0.0112000 |
0.0290000 |
35.8 |
70.0 |
21 |
310.02 |
17.14 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
220487657 |
rs10863543 |
C |
T |
. |
PASS |
0.3298000 |
0.4006000 |
0.4474000 |
0.4960000 |
0.4243000 |
0.4151000 |
37.0 |
70.0 |
24 |
271.22 |
2.78 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
220528842 |
rs35342383 |
T |
TA |
. |
PASS |
0.5076000 |
0.4654000 |
0.4653000 |
0.3797000 |
0.4274000 |
0.4519000 |
37.0 |
70.0 |
31 |
443.42 |
4.47 |
41.94 |
0 |
45.16 |
0/1 |
| chr1 |
220771740 |
rs5781180 |
T |
TTA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.25 |
70.0 |
11 |
169.45 |
29.09 |
45.45 |
0 |
54.55 |
0/1 |
| chr1 |
220789236 |
rs2786599 |
C |
T |
. |
PASS |
0.7587000 |
0.9755000 |
0.9990000 |
0.9990000 |
1.0000000 |
0.9325000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
220789355 |
rs369680057,rs67564055 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
21 |
354.23 |
5.19 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
220789362 |
rs12137627 |
T |
A |
. |
PASS |
0.2708000 |
0.5144000 |
0.5268000 |
0.5755000 |
0.5450000 |
0.4708000 |
37.0 |
70.0 |
20 |
487.96 |
18.57 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
220808921 |
rs10746403 |
T |
C |
. |
PASS |
0.9357000 |
0.5836000 |
0.5377000 |
0.7008000 |
0.6575000 |
0.7053000 |
34.6 |
70.0 |
27 |
279.95 |
20.74 |
37.04 |
0 |
37.04 |
0/1 |
| chr1 |
220824115 |
rs12123306 |
G |
C |
. |
PASS |
0.0651000 |
0.2695000 |
0.0169000 |
0.4563000 |
0.2157000 |
0.1917000 |
37.0 |
70.0 |
42 |
881.22 |
5.33 |
59.52 |
0 |
59.52 |
0/1 |
| chr1 |
220825523 |
rs3737296 |
A |
G |
. |
PASS |
0.9841000 |
0.6988000 |
0.6518000 |
0.7704000 |
0.7812000 |
0.7951000 |
37.0 |
70.0 |
31 |
250.16 |
4.30 |
29.03 |
0 |
29.03 |
0/1 |
| chr1 |
220833990 |
rs6695583 |
C |
T |
. |
PASS |
0.3427000 |
0.5216000 |
0.5298000 |
0.6869000 |
0.5879000 |
0.5222000 |
37.0 |
70.0 |
29 |
256.17 |
7.66 |
31.03 |
0 |
31.03 |
0/1 |
| chr1 |
220970028 |
rs2642438 |
A |
G |
. |
PASS |
0.9508000 |
0.7767000 |
0.7679000 |
0.7217000 |
0.7751000 |
0.8095000 |
37.0 |
70.0 |
106 |
1000.00 |
4.34 |
37.74 |
0 |
37.74 |
0/1 |
| chr1 |
220978645 |
rs17596144 |
C |
T |
. |
PASS |
0.0174000 |
0.0865000 |
0.0298000 |
0.1272000 |
0.1769000 |
0.0827000 |
37.0 |
70.0 |
36 |
318.64 |
25.76 |
30.56 |
0 |
30.56 |
0/1 |
| chr1 |
221053545 |
rs12141189 |
T |
C |
. |
PASS |
0.1710000 |
0.2767000 |
0.2252000 |
0.2505000 |
0.1626000 |
0.2109000 |
36.4 |
69.5 |
83 |
1000.00 |
13.61 |
48.19 |
0 |
48.19 |
0/1 |
| chr1 |
221054761 |
rs17597773 |
C |
G |
. |
PASS |
0.1702000 |
0.2767000 |
0.2252000 |
0.2505000 |
0.1626000 |
0.2107000 |
36.45 |
70.0 |
49 |
722.83 |
5.75 |
44.90 |
0 |
44.90 |
0/1 |
| chr1 |
221055463 |
rs2247213 |
G |
A |
. |
PASS |
0.4675000 |
0.2911000 |
0.0962000 |
0.3400000 |
0.2434000 |
0.2989000 |
37.0 |
70.0 |
22 |
235.48 |
13.64 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
221057646 |
rs2738755 |
C |
T |
. |
PASS |
0.4675000 |
0.2911000 |
0.0952000 |
0.3400000 |
0.2434000 |
0.2987000 |
36.71 |
70.0 |
78 |
1000.00 |
10.26 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
221057662 |
rs3738182 |
G |
A |
. |
PASS |
0.2572000 |
0.1801000 |
0.0942000 |
0.1779000 |
0.2014000 |
0.1869000 |
36.59 |
70.0 |
63 |
977.23 |
3.39 |
46.03 |
0 |
46.03 |
0/1 |
| chr1 |
221523403 |
rs10863605 |
A |
G |
. |
PASS |
0.5295000 |
0.5447000 |
0.4812000 |
0.6173000 |
0.4908000 |
0.5319000 |
36.61 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
221866185 |
rs61820075 |
G |
A |
. |
PASS |
0.2920000 |
0.1830000 |
0.0337000 |
0.2674000 |
0.1779000 |
0.1977000 |
37.0 |
70.0 |
13 |
95.48 |
15.38 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
221866318 |
rs17437483 |
A |
G |
. |
PASS |
0.3850000 |
0.5476000 |
0.5446000 |
0.5736000 |
0.6329000 |
0.5260000 |
35.63 |
70.0 |
77 |
1000.00 |
9.87 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
221912361 |
rs1141714 |
T |
C |
. |
PASS |
0.8313000 |
0.6816000 |
0.6736000 |
0.6412000 |
0.7270000 |
0.7202000 |
36.56 |
70.0 |
53 |
923.79 |
5.59 |
50.94 |
0 |
50.94 |
0/1 |
| chr1 |
221912808 |
rs1136448 |
T |
C |
. |
PASS |
0.0961000 |
0.4179000 |
0.4484000 |
0.3777000 |
0.4806000 |
0.3433000 |
37.0 |
69.41 |
67 |
1000.00 |
4.21 |
50.75 |
0 |
50.75 |
0/1 |
| chr1 |
222230500 |
rs1372651 |
G |
A |
. |
PASS |
0.3759000 |
0.6196000 |
0.6498000 |
0.6720000 |
0.4918000 |
0.5469000 |
36.76 |
69.61 |
88 |
1000.00 |
5.26 |
57.95 |
0 |
57.95 |
0/1 |
| chr1 |
222538919 |
rs146392015,rs35301584 |
C |
CGTT |
. |
PASS |
0.3880000 |
0.4380000 |
0.4425000 |
0.4652000 |
0.5542000 |
0.4539000 |
35.91 |
70.0 |
96 |
1000.00 |
4.58 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
222697088 |
rs3748662 |
G |
A |
. |
PASS |
0.2443000 |
0.2565000 |
0.3254000 |
0.2604000 |
0.2413000 |
0.2650000 |
37.0 |
70.0 |
26 |
724.68 |
0.77 |
76.92 |
0 |
76.92 |
0/1 |
| chr1 |
222700416 |
rs1487523 |
C |
T |
. |
PASS |
0.4365000 |
0.2666000 |
0.3383000 |
0.2604000 |
0.2382000 |
0.3191000 |
36.0 |
70.0 |
26 |
378.51 |
19.23 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
222705270 |
rs4846373 |
T |
C |
. |
PASS |
0.7451000 |
0.5951000 |
0.6548000 |
0.3569000 |
0.3476000 |
0.5505000 |
35.91 |
69.09 |
43 |
733.03 |
19.45 |
51.16 |
0 |
51.16 |
0/1 |
| chr1 |
222713503 |
rs3748664 |
C |
G |
. |
PASS |
0.3434000 |
0.5058000 |
0.5089000 |
0.2604000 |
0.3078000 |
0.3756000 |
35.83 |
70.0 |
102 |
1000.00 |
13.15 |
40.20 |
0 |
40.20 |
0/1 |
| chr1 |
222713631 |
rs3748666 |
G |
C |
. |
PASS |
0.3434000 |
0.5058000 |
0.5089000 |
0.2604000 |
0.3078000 |
0.3756000 |
36.76 |
70.0 |
114 |
1000.00 |
3.20 |
44.74 |
0 |
44.74 |
0/1 |
| chr1 |
222713750 |
rs3828079 |
G |
A |
. |
PASS |
0.7451000 |
0.5965000 |
0.6538000 |
0.3549000 |
0.3466000 |
0.5499000 |
37.0 |
70.0 |
20 |
450.34 |
11.54 |
65.00 |
0 |
65.00 |
0/1 |
| chr1 |
222715247 |
rs11487812 |
A |
G |
. |
PASS |
0.7451000 |
0.5965000 |
0.6558000 |
0.3559000 |
0.3466000 |
0.5505000 |
34.0 |
70.0 |
18 |
223.49 |
16.67 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
222721288 |
rs4846382 |
C |
T |
. |
PASS |
0.3124000 |
0.7205000 |
0.6379000 |
0.6044000 |
0.7669000 |
0.5819000 |
36.6 |
70.0 |
150 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222734628 |
rs10495195 |
C |
T |
. |
PASS |
0.0620000 |
0.0764000 |
0.0407000 |
0.0885000 |
0.1984000 |
0.0917000 |
36.08 |
70.0 |
24 |
426.30 |
19.87 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
222734803 |
rs1134898 |
G |
C |
. |
PASS |
0.0234000 |
0.3530000 |
0.3671000 |
0.5119000 |
0.4131000 |
0.3125000 |
36.69 |
70.0 |
84 |
1000.00 |
1.10 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
222737481 |
rs17464254 |
C |
G |
. |
PASS |
0.0424000 |
0.0764000 |
0.0407000 |
0.0885000 |
0.2004000 |
0.0869000 |
37.0 |
70.0 |
25 |
305.84 |
12.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
222751034 |
rs2936033 |
T |
C |
. |
PASS |
0.3676000 |
0.5101000 |
0.5714000 |
0.7634000 |
0.5624000 |
0.5459000 |
35.29 |
70.0 |
12 |
211.80 |
4.76 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
222798106 |
rs3008617 |
G |
A |
. |
PASS |
0.9939000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9984000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222802006 |
rs2936053 |
A |
G |
. |
PASS |
0.9834000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9956000 |
35.72 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222802803 |
rs3748626 |
T |
G |
. |
PASS |
0.2504000 |
0.5072000 |
0.5823000 |
0.7296000 |
0.5491000 |
0.5074000 |
36.38 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222802926 |
rs3008620 |
C |
T |
. |
PASS |
0.5711000 |
0.9035000 |
0.8899000 |
0.8976000 |
0.8456000 |
0.8005000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222823743 |
rs67180937 |
T |
G |
. |
PASS |
0.1868000 |
0.5144000 |
0.5823000 |
0.7376000 |
0.5481000 |
0.4930000 |
36.04 |
70.0 |
28 |
899.34 |
1.43 |
89.29 |
0 |
89.29 |
0/1 |
| chr1 |
222825403 |
rs3002150 |
G |
A |
. |
PASS |
0.9501000 |
0.9813000 |
0.8869000 |
0.9771000 |
0.8753000 |
0.9325000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222825717 |
rs10495198 |
T |
C |
. |
PASS |
0.1868000 |
0.5144000 |
0.6052000 |
0.7376000 |
0.5798000 |
0.5038000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222825761 |
rs2936019 |
G |
A |
. |
PASS |
0.9501000 |
0.9813000 |
0.8869000 |
0.9771000 |
0.8753000 |
0.9325000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222826481 |
rs2291832 |
G |
A |
. |
PASS |
0.1596000 |
0.5086000 |
0.5813000 |
0.7376000 |
0.5481000 |
0.4848000 |
36.31 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222832295 |
rs2291834 |
T |
C |
. |
PASS |
0.1868000 |
0.5144000 |
0.5813000 |
0.7386000 |
0.5481000 |
0.4930000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222833538 |
rs2291835 |
C |
G |
. |
PASS |
0.0870000 |
0.1311000 |
0.1607000 |
0.1988000 |
0.0685000 |
0.1268000 |
37.0 |
70.0 |
51 |
979.44 |
9.10 |
54.90 |
0 |
54.90 |
0/1 |
| chr1 |
222833601 |
rs3002153 |
T |
C |
. |
PASS |
0.9826000 |
0.9986000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9950000 |
36.84 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222837594 |
rs2270707 |
G |
A |
. |
PASS |
0.6233000 |
0.5937000 |
0.6091000 |
0.8201000 |
0.6084000 |
0.6530000 |
36.52 |
70.0 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222916149 |
rs34273035 |
AT |
A |
. |
PASS |
0.3200000 |
0.5014000 |
0.5754000 |
0.6958000 |
0.5123000 |
0.5096000 |
35.68 |
70.0 |
70 |
1000.00 |
0.00 |
92.86 |
0 |
92.86 |
0/1 |
| chr1 |
222919895 |
rs2378607 |
T |
G |
. |
PASS |
0.2375000 |
0.7378000 |
0.7708000 |
0.6998000 |
0.6585000 |
0.5893000 |
36.7 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
222923351 |
rs6683071 |
A |
G |
. |
PASS |
0.7481000 |
0.8545000 |
0.8006000 |
0.8260000 |
0.7607000 |
0.7915000 |
36.6 |
70.0 |
119 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223156382 |
rs2926159 |
C |
T |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223178561 |
rs9441941 |
A |
C |
. |
PASS |
0.4153000 |
0.5346000 |
0.4782000 |
0.6163000 |
0.4826000 |
0.4980000 |
36.5 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223209231 |
rs2789919 |
C |
T |
. |
PASS |
0.3109000 |
0.6772000 |
0.5407000 |
0.5755000 |
0.4560000 |
0.4894000 |
37.0 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223209289 |
rs2789920 |
A |
G |
. |
PASS |
0.3464000 |
0.6787000 |
0.5417000 |
0.5755000 |
0.4560000 |
0.4992000 |
36.59 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223209318 |
rs72744143 |
G |
C |
. |
PASS |
0.0008000 |
0.0014000 |
0.0000000 |
0.0040000 |
0.0000000 |
0.0011981 |
36.71 |
70.0 |
76 |
1000.00 |
4.26 |
55.26 |
0 |
55.26 |
0/1 |
| chr1 |
223209320 |
rs72744144 |
A |
T |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0050000 |
0.0000000 |
0.0011981 |
37.0 |
70.0 |
74 |
1000.00 |
4.12 |
56.76 |
0 |
56.76 |
0/1 |
| chr1 |
223283910 |
rs7512943 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.5 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223284528 |
rs5744174 |
A |
G |
. |
PASS |
0.1089000 |
0.3487000 |
0.1984000 |
0.4095000 |
0.4663000 |
0.2903000 |
36.11 |
69.26 |
57 |
899.75 |
1.95 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
223397037 |
rs851149 |
T |
C |
. |
PASS |
0.3139000 |
0.2017000 |
0.1974000 |
0.3340000 |
0.2505000 |
0.2666000 |
37.0 |
70.0 |
19 |
286.28 |
3.51 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
223518146 |
rs825131 |
T |
C |
. |
PASS |
0.4773000 |
0.5519000 |
0.5665000 |
0.4642000 |
0.5010000 |
0.5076000 |
36.66 |
70.0 |
73 |
1000.00 |
1.02 |
47.95 |
0 |
47.95 |
0/1 |
| chr1 |
223715248 |
rs36108579 |
GT |
G |
. |
PASS |
0.3033000 |
0.5793000 |
0.5337000 |
0.5606000 |
0.4468000 |
0.4677000 |
36.22 |
70.0 |
51 |
747.17 |
0.17 |
45.10 |
0 |
45.10 |
0/1 |
| chr1 |
223717379 |
rs61823524 |
A |
C |
. |
PASS |
1.0000000 |
0.9294000 |
0.9365000 |
0.9980000 |
1.0000000 |
0.9770000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223717484 |
rs34158997 |
G |
A |
. |
PASS |
0.5356000 |
0.7493000 |
0.6687000 |
0.7555000 |
0.7331000 |
0.6747000 |
36.17 |
70.0 |
150 |
1000.00 |
5.89 |
58.00 |
0 |
58.00 |
0/1 |
| chr1 |
223718518 |
rs61823552 |
C |
A |
. |
PASS |
0.5666000 |
0.7493000 |
0.6746000 |
0.7555000 |
0.7342000 |
0.6843000 |
37.0 |
70.0 |
25 |
222.30 |
48.00 |
32.00 |
0 |
32.00 |
0/1 |
| chr1 |
223718651 |
rs61823553 |
G |
A |
. |
PASS |
0.2042000 |
0.5692000 |
0.5397000 |
0.5586000 |
0.4479000 |
0.4411000 |
37.0 |
70.0 |
57 |
1000.00 |
4.17 |
56.14 |
0 |
56.14 |
0/1 |
| chr1 |
223718670 |
rs61823554 |
G |
A |
. |
PASS |
0.2632000 |
0.5764000 |
0.5456000 |
0.5586000 |
0.4479000 |
0.4589000 |
36.52 |
70.0 |
39 |
882.39 |
2.67 |
64.10 |
0 |
64.10 |
0/1 |
| chr1 |
223722780 |
rs34606532 |
G |
A |
. |
PASS |
0.2057000 |
0.5692000 |
0.5496000 |
0.5586000 |
0.4479000 |
0.4435000 |
34.0 |
70.0 |
16 |
229.51 |
37.50 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
223799857 |
rs34786756 |
C |
T |
. |
PASS |
0.9470000 |
0.7003000 |
0.6994000 |
0.6531000 |
0.7669000 |
0.7688000 |
36.48 |
70.0 |
39 |
798.85 |
0.22 |
58.97 |
0 |
58.97 |
0/1 |
| chr1 |
223799871 |
rs35116708 |
C |
T |
. |
PASS |
0.5696000 |
0.6110000 |
0.4752000 |
0.6044000 |
0.4765000 |
0.5451000 |
37.0 |
70.0 |
48 |
992.62 |
5.95 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
223807239 |
rs34693465 |
C |
G |
. |
PASS |
0.2806000 |
0.2176000 |
0.1230000 |
0.2087000 |
0.1176000 |
0.1939000 |
37.0 |
70.0 |
19 |
156.81 |
31.58 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
223807262 |
rs34900680 |
G |
A |
. |
PASS |
0.1626000 |
0.1988000 |
0.1141000 |
0.2048000 |
0.0532000 |
0.1450000 |
37.0 |
70.0 |
14 |
176.01 |
14.29 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
223813586 |
rs35539373 |
G |
T |
. |
PASS |
0.6740000 |
0.5432000 |
0.5675000 |
0.5229000 |
0.6748000 |
0.6042000 |
36.5 |
70.0 |
41 |
830.45 |
0.41 |
58.54 |
0 |
58.54 |
0/1 |
| chr1 |
223814671 |
rs61825208 |
A |
T |
. |
PASS |
0.6710000 |
0.5432000 |
0.5685000 |
0.5229000 |
0.6769000 |
0.6040000 |
36.76 |
70.0 |
103 |
1000.00 |
5.20 |
48.54 |
0 |
48.54 |
0/1 |
| chr1 |
223814682 |
rs67990281 |
A |
T |
. |
PASS |
0.1611000 |
0.1988000 |
0.1131000 |
0.2058000 |
0.0470000 |
0.1434000 |
36.33 |
70.0 |
113 |
1000.00 |
8.13 |
47.79 |
0 |
47.79 |
0/1 |
| chr1 |
223816322 |
rs66602040 |
A |
G |
. |
PASS |
0.9523000 |
0.7550000 |
0.6925000 |
0.7356000 |
0.7832000 |
0.7961000 |
36.5 |
70.0 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223816347 |
rs61825210 |
A |
G |
. |
PASS |
0.9592000 |
0.7550000 |
0.6925000 |
0.7396000 |
0.7832000 |
0.7987000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223816577 |
rs61825211 |
T |
C |
. |
PASS |
0.9531000 |
0.7550000 |
0.6935000 |
0.7356000 |
0.7843000 |
0.7967000 |
37.0 |
70.0 |
26 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223853099 |
rs66700641 |
C |
A |
. |
PASS |
0.0038000 |
0.0735000 |
0.0000000 |
0.0924000 |
0.0143000 |
0.0325000 |
36.7 |
70.0 |
82 |
1000.00 |
7.44 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
223853440 |
rs10916015 |
A |
G |
. |
PASS |
0.9334000 |
0.9957000 |
0.8472000 |
1.0000000 |
0.9059000 |
0.9327000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223869600 |
rs11587370 |
G |
T |
. |
PASS |
0.4009000 |
0.4078000 |
0.3155000 |
0.5606000 |
0.4663000 |
0.4295000 |
36.31 |
69.62 |
106 |
1000.00 |
1.81 |
49.06 |
0 |
49.06 |
0/1 |
| chr1 |
223900408 |
rs25655 |
C |
G |
. |
PASS |
0.9539000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9874000 |
37.0 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223905532 |
rs17596 |
G |
A |
. |
PASS |
0.3510000 |
0.6354000 |
0.5823000 |
0.7634000 |
0.7382000 |
0.5954000 |
36.03 |
70.0 |
72 |
1000.00 |
2.55 |
51.39 |
0 |
51.39 |
0/1 |
| chr1 |
223934720 |
rs17600 |
G |
A |
. |
PASS |
0.2890000 |
0.7233000 |
0.7143000 |
0.9016000 |
0.9346000 |
0.6839000 |
37.0 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
223949314 |
rs28370127 |
G |
C |
. |
PASS |
0.0008000 |
0.0072000 |
0.0000000 |
0.0169000 |
0.0061000 |
0.0057907 |
37.0 |
70.0 |
30 |
207.24 |
13.33 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
223951985 |
rs737066 |
C |
A |
. |
PASS |
0.2617000 |
0.1960000 |
0.1815000 |
0.0924000 |
0.0644000 |
0.1639000 |
36.08 |
70.0 |
28 |
410.10 |
5.49 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
223954080 |
rs17599 |
A |
C |
. |
PASS |
0.0983000 |
0.2493000 |
0.2698000 |
0.2425000 |
0.2239000 |
0.2073000 |
36.33 |
68.89 |
40 |
582.84 |
3.89 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
223959959 |
rs1153949 |
G |
A |
. |
PASS |
0.2769000 |
0.2046000 |
0.1944000 |
0.0915000 |
0.0787000 |
0.1743000 |
36.5 |
70.0 |
58 |
783.43 |
0.00 |
41.38 |
0 |
41.38 |
0/1 |
| chr1 |
223980207 |
rs1153936 |
G |
C |
. |
PASS |
0.4198000 |
0.2133000 |
0.1935000 |
0.0944000 |
0.0798000 |
0.2139000 |
37.0 |
70.0 |
74 |
1000.00 |
2.40 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
223989966 |
rs1153933 |
C |
T |
. |
PASS |
0.4160000 |
0.2147000 |
0.1935000 |
0.0934000 |
0.0798000 |
0.2129000 |
36.47 |
70.0 |
78 |
1000.00 |
5.30 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
224008913 |
rs3738370 |
G |
A |
. |
PASS |
0.3759000 |
0.2089000 |
0.1925000 |
0.0905000 |
0.0787000 |
0.2005000 |
36.52 |
70.0 |
58 |
825.20 |
12.00 |
43.10 |
0 |
43.10 |
0/1 |
| chr1 |
224044284 |
rs12730520 |
C |
A |
. |
PASS |
0.1059000 |
0.2320000 |
0.1786000 |
0.2435000 |
0.2055000 |
0.1851000 |
37.0 |
70.0 |
32 |
451.85 |
1.79 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
224051461 |
rs6658752 |
A |
G |
. |
PASS |
0.1044000 |
0.2363000 |
0.1786000 |
0.2455000 |
0.2065000 |
0.1859000 |
37.0 |
70.0 |
11 |
226.81 |
5.19 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
224051926 |
rs7519753 |
T |
C |
. |
PASS |
0.4395000 |
0.2853000 |
0.2470000 |
0.2495000 |
0.2229000 |
0.2989000 |
36.54 |
70.0 |
39 |
924.16 |
2.56 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
224052192 |
rs6696120 |
G |
C |
. |
PASS |
0.7882000 |
0.2781000 |
0.3631000 |
0.3191000 |
0.2873000 |
0.4399000 |
36.23 |
69.94 |
172 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224133240 |
rs147548627 |
G |
A |
. |
PASS |
0.0779000 |
0.1066000 |
0.0208000 |
0.1978000 |
0.0982000 |
0.0984000 |
37.0 |
53.59 |
36 |
569.26 |
12.75 |
47.22 |
0 |
47.22 |
0/1 |
| chr1 |
224218429 |
rs199851169 |
G |
A |
. |
PASS |
0.2700000 |
0.2435000 |
0.0853000 |
0.3867000 |
0.1973000 |
0.2384000 |
37.0 |
53.21 |
28 |
468.03 |
7.14 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
224226372 |
rs147761086 |
T |
A |
. |
PASS |
0.3260000 |
0.5922000 |
0.6538000 |
0.5089000 |
0.6319000 |
0.5254000 |
37.0 |
57.5 |
15 |
168.85 |
40.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
224302154 |
rs3066024 |
T |
TGAG |
. |
PASS |
0.9470000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9848000 |
36.5 |
70.0 |
23 |
901.64 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224318151 |
rs3065998,rs10651854 |
T |
TTTG |
. |
PASS |
0.9478000 |
0.9928000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9850000 |
36.74 |
68.71 |
32 |
1000.00 |
2.82 |
96.88 |
0 |
100.00 |
1/1 |
| chr1 |
224321984 |
rs1472167 |
C |
T |
. |
PASS |
0.9826000 |
0.9957000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9946000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224345012 |
rs7543762 |
G |
A |
. |
PASS |
0.9826000 |
0.9957000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9946000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224363370 |
rs6426178 |
A |
T |
. |
PASS |
0.5212000 |
0.5778000 |
0.6111000 |
0.4742000 |
0.3988000 |
0.5138000 |
36.63 |
69.32 |
161 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224380234 |
rs908804 |
A |
G |
. |
PASS |
0.2065000 |
0.2248000 |
0.3581000 |
0.0944000 |
0.0746000 |
0.1913000 |
37.0 |
70.0 |
19 |
328.05 |
7.37 |
52.63 |
0 |
52.63 |
0/1 |
| chr1 |
224492381 |
rs7522125 |
C |
T |
. |
PASS |
0.9622000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9896000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224492746 |
rs3754090 |
C |
T |
. |
PASS |
0.5242000 |
0.9337000 |
0.8899000 |
0.9672000 |
0.9162000 |
0.8201000 |
37.0 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224495852 |
rs7534447 |
C |
T |
. |
PASS |
0.5295000 |
0.9337000 |
0.8899000 |
0.9672000 |
0.9172000 |
0.8217000 |
36.54 |
70.0 |
78 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224505570 |
rs3066969 |
T |
TAA |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.17 |
69.44 |
35 |
1000.00 |
2.69 |
97.14 |
0 |
100.00 |
1/1 |
| chr1 |
224517842 |
rs2896990 |
C |
T |
. |
PASS |
0.5605000 |
0.9337000 |
0.8899000 |
0.9672000 |
0.9172000 |
0.8299000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224517907 |
rs4146965 |
A |
T |
. |
PASS |
0.5242000 |
0.9337000 |
0.8899000 |
0.9672000 |
0.9172000 |
0.8203000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224544529 |
rs7517754 |
A |
G |
. |
PASS |
0.3616000 |
0.8141000 |
0.9891000 |
0.7505000 |
0.8885000 |
0.7316000 |
37.0 |
70.0 |
12 |
140.26 |
0.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
224585958 |
rs7522956 |
A |
C |
. |
PASS |
0.5091000 |
0.1686000 |
0.0109000 |
0.2485000 |
0.1115000 |
0.2316000 |
37.0 |
70.0 |
27 |
383.36 |
44.44 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
224588825 |
rs7518109 |
T |
A |
. |
PASS |
0.5530000 |
0.1700000 |
0.0109000 |
0.2505000 |
0.1125000 |
0.2440000 |
37.0 |
70.0 |
23 |
228.32 |
10.87 |
34.78 |
0 |
34.78 |
0/1 |
| chr1 |
224621368 |
rs2405033 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.73 |
69.55 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
224762366 |
rs61825844 |
C |
G |
. |
PASS |
0.0061000 |
0.0403000 |
0.0000000 |
0.0964000 |
0.0593000 |
0.0381000 |
37.0 |
70.0 |
30 |
541.40 |
7.50 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
224762915 |
rs56403019 |
G |
A |
. |
PASS |
0.0681000 |
0.1066000 |
0.1984000 |
0.1948000 |
0.1258000 |
0.1364000 |
37.0 |
69.8 |
47 |
661.47 |
12.13 |
42.55 |
0 |
42.55 |
0/1 |
| chr1 |
224868596 |
rs7525096 |
A |
C |
. |
PASS |
0.2663000 |
0.1052000 |
0.1171000 |
0.1700000 |
0.1053000 |
0.1631000 |
37.0 |
70.0 |
31 |
329.54 |
28.15 |
35.48 |
0 |
35.48 |
0/1 |
| chr1 |
224872443 |
rs3738364 |
A |
G |
. |
PASS |
0.4130000 |
0.2450000 |
0.3056000 |
0.1978000 |
0.2045000 |
0.2841000 |
37.0 |
70.0 |
22 |
235.47 |
18.18 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
224872473 |
rs3738363 |
A |
G |
. |
PASS |
0.4077000 |
0.1210000 |
0.1190000 |
0.1730000 |
0.1043000 |
0.2035000 |
37.0 |
70.0 |
30 |
336.70 |
13.94 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
224874744 |
rs10915694 |
C |
G |
. |
PASS |
0.6301000 |
0.4769000 |
0.4940000 |
0.3728000 |
0.3282000 |
0.4708000 |
37.0 |
69.53 |
85 |
1000.00 |
1.09 |
50.59 |
0 |
50.59 |
0/1 |
| chr1 |
224874775 |
rs4653403 |
G |
A |
. |
PASS |
0.8192000 |
0.9510000 |
0.9087000 |
0.9960000 |
0.9254000 |
0.9117000 |
36.63 |
69.69 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225156457 |
rs16858926 |
G |
A |
. |
PASS |
0.0023000 |
0.1671000 |
0.3036000 |
0.1044000 |
0.1421000 |
0.1336000 |
36.2 |
70.0 |
31 |
488.77 |
15.05 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
225230608 |
rs2501107 |
C |
T |
. |
PASS |
0.3616000 |
0.7651000 |
0.7212000 |
0.9553000 |
0.8333000 |
0.7013000 |
35.73 |
69.7 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225237850 |
rs2501086 |
A |
C |
. |
PASS |
0.3616000 |
0.7651000 |
0.7212000 |
0.9553000 |
0.8333000 |
0.7013000 |
35.91 |
70.0 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225266966 |
rs3105559 |
C |
G |
. |
PASS |
0.3654000 |
0.7651000 |
0.7212000 |
0.9553000 |
0.8333000 |
0.7023000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225268343 |
rs3128651 |
A |
G |
. |
PASS |
0.3654000 |
0.7651000 |
0.7262000 |
0.9553000 |
0.8333000 |
0.7033000 |
36.49 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225268346 |
rs3128652 |
G |
A |
. |
PASS |
0.3654000 |
0.7651000 |
0.7262000 |
0.9523000 |
0.8333000 |
0.7027000 |
37.0 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225270409 |
rs3128655 |
A |
T |
. |
PASS |
0.3366000 |
0.7277000 |
0.7133000 |
0.8817000 |
0.7771000 |
0.6621000 |
35.98 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225273248 |
rs3128658 |
G |
T |
. |
PASS |
0.3654000 |
0.7651000 |
0.7202000 |
0.9553000 |
0.8333000 |
0.7021000 |
35.15 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225373072 |
rs61851487 |
C |
T |
. |
PASS |
0.1331000 |
0.1902000 |
0.3125000 |
0.1133000 |
0.1431000 |
0.1751000 |
37.0 |
70.0 |
41 |
595.99 |
7.32 |
43.90 |
0 |
43.90 |
0/1 |
| chr1 |
225394645 |
rs1466468 |
A |
T |
. |
PASS |
0.1331000 |
0.1916000 |
0.3125000 |
0.1133000 |
0.1431000 |
0.1753000 |
35.67 |
70.0 |
19 |
270.11 |
3.51 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
225439988 |
rs630120 |
T |
C |
. |
PASS |
0.6982000 |
0.4568000 |
0.5982000 |
0.2316000 |
0.3609000 |
0.4850000 |
35.67 |
70.0 |
18 |
277.28 |
11.11 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
225445652 |
rs670255 |
G |
T |
. |
PASS |
0.6982000 |
0.4582000 |
0.5982000 |
0.2306000 |
0.3609000 |
0.4850000 |
35.8 |
70.0 |
29 |
687.48 |
2.76 |
68.97 |
0 |
68.97 |
0/1 |
| chr1 |
225460626 |
rs656649 |
T |
A |
. |
PASS |
0.5068000 |
0.4352000 |
0.6438000 |
0.2366000 |
0.3630000 |
0.4421000 |
37.0 |
70.0 |
24 |
434.16 |
11.54 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
225506262 |
rs4653418 |
G |
A |
. |
PASS |
0.0567000 |
0.2680000 |
0.3353000 |
0.2107000 |
0.2740000 |
0.2155000 |
35.5 |
70.0 |
23 |
542.61 |
0.54 |
69.57 |
0 |
69.57 |
0/1 |
| chr1 |
225512402 |
rs75859387 |
GT |
G |
. |
PASS |
0.0635000 |
0.2695000 |
0.3363000 |
0.2107000 |
0.2740000 |
0.2177000 |
36.4 |
70.0 |
21 |
306.46 |
2.86 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
225528183 |
rs3856145 |
C |
A |
. |
PASS |
0.6430000 |
0.4697000 |
0.5089000 |
0.4046000 |
0.5695000 |
0.5298000 |
35.96 |
70.0 |
44 |
767.64 |
0.20 |
52.27 |
0 |
52.27 |
0/1 |
| chr1 |
225533684 |
rs6667999 |
A |
G |
. |
PASS |
0.6399000 |
0.4697000 |
0.5089000 |
0.4046000 |
0.5695000 |
0.5290000 |
36.2 |
70.0 |
56 |
1000.00 |
1.90 |
53.57 |
0 |
53.57 |
0/1 |
| chr1 |
225534219 |
rs7527925 |
T |
C |
. |
PASS |
0.6407000 |
0.4697000 |
0.5089000 |
0.4046000 |
0.5695000 |
0.5292000 |
37.0 |
70.0 |
57 |
464.28 |
5.70 |
28.07 |
0 |
28.07 |
0/1 |
| chr1 |
225534348 |
rs7535953 |
G |
A |
. |
PASS |
0.6407000 |
0.4697000 |
0.5089000 |
0.4046000 |
0.5695000 |
0.5292000 |
37.0 |
69.43 |
87 |
1000.00 |
1.64 |
40.23 |
0 |
40.23 |
0/1 |
| chr1 |
225546172 |
rs9659299 |
C |
G |
. |
PASS |
0.5098000 |
0.4928000 |
0.5893000 |
0.2922000 |
0.3620000 |
0.4509000 |
35.5 |
70.0 |
15 |
240.38 |
3.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
225552624 |
rs10495239 |
G |
A |
. |
PASS |
0.5129000 |
0.5159000 |
0.5962000 |
0.3479000 |
0.4356000 |
0.4818000 |
36.0 |
70.0 |
39 |
828.61 |
3.85 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
225552650 |
rs12563830 |
C |
T |
. |
PASS |
0.5121000 |
0.5159000 |
0.5952000 |
0.3479000 |
0.4356000 |
0.4814000 |
36.0 |
70.0 |
23 |
387.54 |
2.90 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
225555512 |
rs11578981 |
C |
T |
. |
PASS |
0.1876000 |
0.4366000 |
0.2321000 |
0.5696000 |
0.2761000 |
0.3251000 |
35.04 |
70.0 |
49 |
1000.00 |
1.70 |
97.96 |
0 |
100.00 |
1/1 |
| chr1 |
225555602 |
rs12737248 |
T |
G |
. |
PASS |
0.1914000 |
0.4366000 |
0.2321000 |
0.5716000 |
0.2914000 |
0.3295000 |
37.0 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225562385 |
rs10915816 |
C |
T |
. |
PASS |
0.3570000 |
0.8631000 |
0.9663000 |
0.8410000 |
0.6779000 |
0.7097000 |
37.0 |
69.73 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225565015 |
rs3856154 |
T |
C |
. |
PASS |
0.2950000 |
0.7507000 |
0.7619000 |
0.6590000 |
0.4540000 |
0.5563000 |
36.53 |
70.0 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225565073 |
rs3856155 |
C |
T |
. |
PASS |
0.1710000 |
0.7118000 |
0.7411000 |
0.6123000 |
0.3885000 |
0.4918000 |
36.45 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225569241 |
rs950210 |
T |
G |
. |
PASS |
0.1936000 |
0.7435000 |
0.7639000 |
0.6561000 |
0.4540000 |
0.5284000 |
36.35 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225576058 |
rs6679430 |
T |
C |
. |
PASS |
0.1831000 |
0.7435000 |
0.7639000 |
0.6581000 |
0.4540000 |
0.5260000 |
36.29 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225577648 |
rs12134158 |
C |
T |
. |
PASS |
0.1634000 |
0.7104000 |
0.7371000 |
0.6083000 |
0.4029000 |
0.4908000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225586274 |
rs41304131 |
G |
T |
. |
PASS |
0.0008000 |
0.0101000 |
0.0000000 |
0.0338000 |
0.0072000 |
0.0097844 |
36.64 |
70.0 |
62 |
1000.00 |
12.32 |
53.23 |
0 |
53.23 |
0/1 |
| chr1 |
225603103 |
rs6702433 |
C |
T |
. |
PASS |
0.3631000 |
0.8573000 |
0.9643000 |
0.8419000 |
0.6861000 |
0.7119000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225607144 |
rs2230419 |
C |
T |
. |
PASS |
0.3631000 |
0.8602000 |
0.9633000 |
0.8419000 |
0.6871000 |
0.7123000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225609884 |
rs1056608 |
A |
G |
. |
PASS |
0.3328000 |
0.8329000 |
0.9018000 |
0.8022000 |
0.6401000 |
0.6709000 |
36.48 |
70.0 |
116 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225611661 |
rs1056607 |
C |
T |
. |
PASS |
0.6286000 |
0.7839000 |
0.7440000 |
0.7058000 |
0.4663000 |
0.6571000 |
35.78 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225611845 |
rs1340867 |
C |
T |
. |
PASS |
0.5991000 |
0.7205000 |
0.7510000 |
0.6044000 |
0.3650000 |
0.6018000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225685621 |
rs28364744,rs145776060 |
TAAG |
T |
. |
PASS |
0.6838000 |
0.6484000 |
0.7034000 |
0.6849000 |
0.4427000 |
0.6360000 |
34.69 |
70.0 |
16 |
544.48 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
225877709 |
rs2769680 |
T |
C |
. |
PASS |
0.6717000 |
0.5187000 |
0.6577000 |
0.3211000 |
0.3681000 |
0.5180000 |
36.71 |
70.0 |
84 |
1000.00 |
0.17 |
48.81 |
0 |
48.81 |
0/1 |
| chr1 |
225965832 |
rs1461957 |
G |
T |
. |
PASS |
0.0363000 |
0.1643000 |
0.1121000 |
0.1928000 |
0.1493000 |
0.1228000 |
35.5 |
70.0 |
13 |
246.40 |
5.77 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
225990957 |
. |
GGT |
GCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.91 |
69.46 |
132 |
1000.00 |
1.25 |
51.52 |
0 |
51.52 |
0/1 |
| chr1 |
225991093 |
rs4653684 |
A |
G |
. |
PASS |
0.2572000 |
0.5159000 |
0.6885000 |
0.4652000 |
0.7536000 |
0.5186000 |
36.67 |
69.39 |
72 |
1000.00 |
11.11 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
225991165 |
rs11588766 |
G |
A |
. |
PASS |
0.0068000 |
0.1354000 |
0.1706000 |
0.1491000 |
0.1810000 |
0.1202000 |
36.08 |
70.0 |
25 |
423.29 |
17.85 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
225991176 |
rs4653685 |
T |
G |
. |
PASS |
0.2579000 |
0.5159000 |
0.6885000 |
0.4652000 |
0.7536000 |
0.5188000 |
37.0 |
70.0 |
21 |
359.65 |
2.60 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
226019633 |
rs1051740 |
T |
C |
. |
PASS |
0.1407000 |
0.3199000 |
0.4821000 |
0.3042000 |
0.3773000 |
0.3133000 |
37.0 |
70.0 |
61 |
1000.00 |
4.44 |
50.82 |
0 |
50.82 |
0/1 |
| chr1 |
226026406 |
rs2234922 |
A |
G |
. |
PASS |
0.3533000 |
0.1427000 |
0.1181000 |
0.1640000 |
0.2342000 |
0.2155000 |
35.8 |
70.0 |
88 |
1000.00 |
1.36 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
226027067 |
. |
GGT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.38 |
70.0 |
201 |
1000.00 |
5.90 |
20.90 |
0 |
20.90 |
0/1 |
| chr1 |
226027196 |
rs2671266 |
C |
T |
. |
PASS |
0.1082000 |
0.0591000 |
0.1101000 |
0.0944000 |
0.2597000 |
0.1286000 |
37.0 |
70.0 |
20 |
157.95 |
0.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
226032229 |
rs1051741 |
C |
T |
. |
PASS |
0.1051000 |
0.0591000 |
0.1141000 |
0.0895000 |
0.2536000 |
0.1264000 |
36.29 |
70.0 |
109 |
1000.00 |
2.02 |
62.39 |
0 |
62.39 |
0/1 |
| chr1 |
226034909 |
rs41441645 |
G |
A |
. |
PASS |
0.0030000 |
0.0029000 |
0.0863000 |
0.0119000 |
0.0082000 |
0.0226000 |
35.86 |
69.52 |
85 |
1000.00 |
3.42 |
49.41 |
0 |
49.41 |
0/1 |
| chr1 |
226036309 |
rs360063 |
A |
G |
. |
PASS |
0.8260000 |
0.5836000 |
0.6935000 |
0.5765000 |
0.7209000 |
0.6951000 |
37.0 |
70.0 |
20 |
325.04 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
226044489 |
rs60955535 |
G |
GC |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.48 |
70.0 |
21 |
814.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226044766 |
rs9919303 |
G |
A |
. |
PASS |
0.5492000 |
0.3141000 |
0.5179000 |
0.2624000 |
0.4734000 |
0.4379000 |
36.29 |
70.0 |
43 |
536.20 |
5.47 |
39.53 |
0 |
39.53 |
0/1 |
| chr1 |
226048744 |
rs34700682 |
CA |
C |
. |
PASS |
0.1740000 |
0.4222000 |
0.3194000 |
0.4324000 |
0.2802000 |
0.3103000 |
36.7 |
70.0 |
58 |
612.79 |
0.69 |
34.48 |
0 |
34.48 |
0/1 |
| chr1 |
226054714 |
rs2292563 |
G |
A |
. |
PASS |
0.6589000 |
0.3329000 |
0.5169000 |
0.2624000 |
0.4755000 |
0.4696000 |
37.0 |
70.0 |
14 |
343.09 |
8.57 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
226055595 |
rs2292564 |
G |
A |
. |
PASS |
0.5189000 |
0.3127000 |
0.5188000 |
0.2624000 |
0.4744000 |
0.4301000 |
35.78 |
70.0 |
129 |
1000.00 |
1.89 |
45.74 |
0 |
45.74 |
0/1 |
| chr1 |
226065191 |
rs72754986 |
G |
C |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.22 |
69.57 |
107 |
1000.00 |
5.85 |
42.99 |
0 |
42.99 |
0/1 |
| chr1 |
226074563 |
rs360057 |
T |
G |
. |
PASS |
0.1407000 |
0.3415000 |
0.2073000 |
0.3946000 |
0.2526000 |
0.2548000 |
36.81 |
68.68 |
127 |
1000.00 |
5.57 |
49.61 |
0 |
49.61 |
0/1 |
| chr1 |
226075410 |
rs57114136 |
GC |
G |
. |
PASS |
0.1369000 |
0.3415000 |
0.1696000 |
0.3956000 |
0.2526000 |
0.2464000 |
35.47 |
68.69 |
50 |
1000.00 |
2.29 |
98.00 |
0 |
98.00 |
1/1 |
| chr1 |
226110170 |
rs72754998 |
C |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
12 |
261.42 |
8.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
226125543 |
rs60825997 |
G |
GA |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.52 |
69.72 |
69 |
1000.00 |
0.94 |
98.55 |
0 |
98.55 |
1/1 |
| chr1 |
226125617 |
rs3007716 |
A |
G |
. |
PASS |
0.0658000 |
0.1326000 |
0.0724000 |
0.2247000 |
0.1953000 |
0.1336000 |
37.0 |
70.0 |
14 |
343.09 |
0.00 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
226127443 |
rs74578461 |
G |
C |
. |
PASS |
0.3669000 |
0.3602000 |
0.1518000 |
0.3459000 |
0.2301000 |
0.2917000 |
36.72 |
69.27 |
170 |
1000.00 |
1.29 |
50.59 |
0 |
50.59 |
0/1 |
| chr1 |
226180026 |
rs72757014 |
C |
T |
. |
PASS |
0.0053000 |
0.0375000 |
0.0000000 |
0.1153000 |
0.0409000 |
0.0377000 |
35.91 |
70.0 |
29 |
327.70 |
18.81 |
37.93 |
0 |
37.93 |
0/1 |
| chr1 |
226214882 |
rs6682659 |
A |
G |
. |
PASS |
0.5908000 |
0.6758000 |
0.4940000 |
0.5706000 |
0.6063000 |
0.5821000 |
36.81 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226252232 |
rs2036870 |
C |
T |
. |
PASS |
0.9402000 |
0.9914000 |
1.0000000 |
0.9990000 |
0.9990000 |
0.9826000 |
35.29 |
70.0 |
21 |
805.66 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226253316 |
rs1849032 |
G |
T |
. |
PASS |
0.9402000 |
0.9914000 |
1.0000000 |
0.9990000 |
0.9990000 |
0.9826000 |
34.43 |
70.0 |
14 |
509.12 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226334578 |
rs1219666 |
G |
A |
. |
PASS |
0.9985000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9996000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226352498 |
rs2306120 |
T |
G |
. |
PASS |
0.6150000 |
0.6383000 |
0.4504000 |
0.6103000 |
0.3436000 |
0.5311000 |
36.68 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226353521 |
rs2306121 |
T |
A |
. |
PASS |
0.5439000 |
0.4179000 |
0.3700000 |
0.4245000 |
0.2648000 |
0.4129000 |
34.82 |
70.0 |
33 |
299.51 |
18.18 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
226411317 |
rs10915962 |
C |
T |
. |
PASS |
0.5310000 |
0.6455000 |
0.6994000 |
0.6829000 |
0.5665000 |
0.6182000 |
37.0 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226438449 |
rs6678137 |
T |
C |
. |
PASS |
0.8275000 |
0.8559000 |
0.9593000 |
0.8678000 |
0.7894000 |
0.8586000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226474132 |
rs10799347 |
G |
A |
. |
PASS |
0.7542000 |
0.6657000 |
0.7450000 |
0.6799000 |
0.6636000 |
0.7075000 |
36.53 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226485327 |
rs11390947,rs11397221 |
A |
AT |
. |
PASS |
0.5658000 |
0.6527000 |
0.7123000 |
0.6819000 |
0.5757000 |
0.6326000 |
36.2 |
70.0 |
14 |
509.69 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226488826 |
rs11577454 |
A |
G |
. |
PASS |
0.1490000 |
0.2709000 |
0.2123000 |
0.2893000 |
0.3078000 |
0.2378000 |
37.0 |
70.0 |
35 |
614.05 |
2.86 |
51.43 |
0 |
51.43 |
0/1 |
| chr1 |
226555302 |
rs1136410 |
A |
G |
. |
PASS |
0.0371000 |
0.3516000 |
0.4365000 |
0.1541000 |
0.1002000 |
0.1969000 |
36.6 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226556094 |
rs1805400 |
T |
C |
. |
PASS |
0.9501000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9864000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226570767 |
rs2230484 |
G |
A |
. |
PASS |
0.0000000 |
0.0043000 |
0.0000000 |
0.0070000 |
0.0000000 |
0.0019968 |
35.83 |
70.0 |
89 |
1000.00 |
3.18 |
46.07 |
0 |
46.07 |
0/1 |
| chr1 |
226573364 |
rs1805414 |
A |
G |
. |
PASS |
0.5582000 |
0.5029000 |
0.7946000 |
0.3290000 |
0.3763000 |
0.5166000 |
37.0 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226576270 |
rs2255403 |
A |
G |
. |
PASS |
0.1415000 |
0.3559000 |
0.4841000 |
0.1541000 |
0.1902000 |
0.2522000 |
37.0 |
70.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226578047 |
rs1805411 |
G |
T |
. |
PASS |
0.0870000 |
0.3530000 |
0.4365000 |
0.1541000 |
0.1002000 |
0.2103000 |
37.0 |
70.0 |
17 |
670.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226578099 |
rs1805403 |
T |
C |
. |
PASS |
0.9713000 |
0.8127000 |
0.9315000 |
0.7734000 |
0.7464000 |
0.8576000 |
36.56 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226589958 |
rs1805404 |
G |
A |
. |
PASS |
0.1150000 |
0.3573000 |
0.4365000 |
0.1541000 |
0.1002000 |
0.2183000 |
37.0 |
69.97 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226595647 |
rs907187 |
C |
G |
. |
PASS |
0.0371000 |
0.3530000 |
0.4375000 |
0.1630000 |
0.1002000 |
0.1991000 |
35.93 |
69.7 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
226825341 |
rs2236604 |
G |
A |
. |
PASS |
0.2148000 |
0.1571000 |
0.2540000 |
0.1412000 |
0.1595000 |
0.1891000 |
36.6 |
70.0 |
48 |
1000.00 |
9.17 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
226923505 |
rs708776 |
G |
T |
. |
PASS |
0.9962000 |
0.9553000 |
1.0000000 |
0.9423000 |
0.9928000 |
0.9798000 |
36.31 |
70.0 |
84 |
1000.00 |
0.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
226923938 |
rs6667260 |
A |
C |
. |
PASS |
0.6067000 |
0.6599000 |
0.6786000 |
0.5258000 |
0.5971000 |
0.6104000 |
36.68 |
70.0 |
68 |
1000.00 |
8.11 |
54.41 |
0 |
54.41 |
0/1 |
| chr1 |
226924642 |
rs3754415 |
C |
T |
. |
PASS |
0.1694000 |
0.2032000 |
0.3393000 |
0.2127000 |
0.2209000 |
0.2270000 |
37.0 |
69.11 |
93 |
1000.00 |
20.50 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
227069677 |
rs11405 |
T |
C |
. |
PASS |
0.8313000 |
0.7176000 |
0.5427000 |
0.8022000 |
0.7495000 |
0.7356000 |
37.0 |
70.0 |
69 |
1000.00 |
7.42 |
49.28 |
0 |
49.28 |
0/1 |
| chr1 |
227069737 |
rs6759 |
C |
T |
. |
PASS |
0.3646000 |
0.4827000 |
0.3859000 |
0.5934000 |
0.4264000 |
0.4433000 |
36.5 |
70.0 |
52 |
801.50 |
7.69 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
227071364 |
rs1295643 |
G |
A |
. |
PASS |
0.3646000 |
0.4827000 |
0.3859000 |
0.5934000 |
0.4264000 |
0.4433000 |
35.0 |
70.0 |
16 |
157.99 |
37.50 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
227071377 |
rs1295644 |
T |
C |
. |
PASS |
0.5507000 |
0.6254000 |
0.4911000 |
0.7982000 |
0.6820000 |
0.6244000 |
34.6 |
70.0 |
19 |
107.19 |
35.79 |
26.32 |
0 |
26.32 |
0/1 |
| chr1 |
227071525 |
rs1046240 |
C |
T |
. |
PASS |
0.3646000 |
0.4827000 |
0.3859000 |
0.5934000 |
0.4264000 |
0.4433000 |
36.74 |
69.13 |
78 |
1000.00 |
1.00 |
58.97 |
0 |
58.97 |
0/1 |
| chr1 |
227073144 |
rs72758667 |
A |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0020000 |
0.0000000 |
0.0003994 |
37.0 |
70.0 |
20 |
325.03 |
20.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
227073410 |
rs2236910 |
G |
C |
. |
PASS |
0.8313000 |
0.7176000 |
0.5427000 |
0.8022000 |
0.7495000 |
0.7356000 |
37.0 |
70.0 |
33 |
448.84 |
5.19 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
227078955 |
rs2802267 |
T |
C |
. |
PASS |
0.7753000 |
0.7104000 |
0.5565000 |
0.8022000 |
0.7505000 |
0.7228000 |
37.0 |
70.0 |
23 |
524.85 |
2.32 |
65.22 |
0 |
65.22 |
0/1 |
| chr1 |
227081622 |
rs10753428 |
A |
G |
. |
PASS |
0.7988000 |
0.6556000 |
0.4931000 |
0.8032000 |
0.7055000 |
0.7001000 |
36.08 |
70.0 |
26 |
420.27 |
7.69 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
227081850 |
rs2855562 |
G |
A |
. |
PASS |
0.4803000 |
0.6297000 |
0.6052000 |
0.6223000 |
0.5798000 |
0.5741000 |
36.7 |
69.5 |
71 |
1000.00 |
0.42 |
56.34 |
0 |
56.34 |
0/1 |
| chr1 |
227149203 |
rs11549708 |
G |
A |
. |
PASS |
0.0310000 |
0.1110000 |
0.0010000 |
0.2187000 |
0.0665000 |
0.0807000 |
36.26 |
70.0 |
133 |
1000.00 |
3.49 |
60.90 |
0 |
60.90 |
0/1 |
| chr1 |
227165097 |
rs3806263 |
G |
A |
. |
PASS |
0.3434000 |
0.2594000 |
0.2788000 |
0.2137000 |
0.1892000 |
0.2626000 |
37.0 |
70.0 |
28 |
342.73 |
5.84 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
227171584 |
rs3215919 |
GT |
G |
. |
PASS |
0.2776000 |
0.2709000 |
0.1359000 |
0.4314000 |
0.1912000 |
0.2622000 |
34.96 |
69.64 |
101 |
1000.00 |
0.18 |
55.45 |
0 |
55.45 |
0/1 |
| chr1 |
227171736 |
rs149374145 |
G |
GT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
32 |
231.56 |
31.25 |
28.12 |
1 |
28.12 |
0/1 |
| chr1 |
227171738 |
rs377335668 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
32 |
305.53 |
11.36 |
34.38 |
1 |
37.50 |
0/1 |
| chr1 |
227171739 |
rs1574185 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.36 |
70.0 |
35 |
740.96 |
3.64 |
62.86 |
1 |
62.86 |
0/1 |
| chr1 |
227171958 |
rs7530213 |
G |
C |
. |
PASS |
0.1233000 |
0.2320000 |
0.0962000 |
0.3062000 |
0.1166000 |
0.1683000 |
36.73 |
70.0 |
116 |
1000.00 |
10.65 |
38.79 |
0 |
38.79 |
0/1 |
| chr1 |
227172290 |
rs12593 |
C |
T |
. |
PASS |
0.1649000 |
0.2695000 |
0.1716000 |
0.4274000 |
0.1912000 |
0.2386000 |
36.33 |
70.0 |
73 |
1000.00 |
1.29 |
49.32 |
0 |
49.32 |
0/1 |
| chr1 |
227172518 |
rs1317490 |
C |
T |
. |
PASS |
0.0809000 |
0.1282000 |
0.0030000 |
0.2565000 |
0.1094000 |
0.1126000 |
37.0 |
70.0 |
12 |
98.49 |
16.67 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
227172935 |
rs2297416 |
C |
G |
. |
PASS |
0.2572000 |
0.2839000 |
0.1577000 |
0.4414000 |
0.1922000 |
0.2652000 |
35.8 |
70.0 |
23 |
299.84 |
6.96 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
227174122 |
rs41303131 |
C |
G |
. |
PASS |
0.0651000 |
0.1354000 |
0.0030000 |
0.2714000 |
0.1155000 |
0.1136000 |
37.0 |
70.0 |
14 |
88.32 |
42.86 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
227174145 |
rs7552783 |
T |
C |
. |
PASS |
0.4221000 |
0.3256000 |
0.2133000 |
0.4970000 |
0.2679000 |
0.3516000 |
37.0 |
70.0 |
24 |
145.91 |
25.00 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
227174210 |
rs3738725 |
T |
C |
. |
PASS |
0.2882000 |
0.3127000 |
0.2133000 |
0.4940000 |
0.2679000 |
0.3139000 |
36.5 |
70.0 |
75 |
732.27 |
17.67 |
32.00 |
0 |
32.00 |
0/1 |
| chr1 |
227181923 |
rs3795451 |
C |
T |
. |
PASS |
0.2700000 |
0.2853000 |
0.2123000 |
0.4423000 |
0.2188000 |
0.2851000 |
33.4 |
70.0 |
24 |
276.97 |
18.33 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
227182033 |
rs2802269 |
G |
A |
. |
PASS |
0.9259000 |
0.8718000 |
0.8869000 |
0.8738000 |
0.8139000 |
0.8782000 |
36.53 |
70.0 |
102 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227182179 |
rs61833999 |
C |
T |
. |
PASS |
0.0484000 |
0.1124000 |
0.0030000 |
0.2197000 |
0.0654000 |
0.0859000 |
37.0 |
70.0 |
11 |
143.27 |
14.55 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
227182575 |
rs1045247 |
A |
G |
. |
PASS |
0.9803000 |
0.8372000 |
0.8274000 |
0.8260000 |
0.6125000 |
0.8269000 |
36.67 |
70.0 |
109 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227206038 |
rs1953012 |
T |
C |
. |
PASS |
0.4221000 |
0.4467000 |
0.3810000 |
0.5924000 |
0.5992000 |
0.4860000 |
36.38 |
70.0 |
99 |
1000.00 |
1.36 |
58.59 |
0 |
58.59 |
0/1 |
| chr1 |
227210888 |
rs11578479 |
A |
T |
. |
PASS |
0.3411000 |
0.2939000 |
0.1478000 |
0.4374000 |
0.1933000 |
0.2861000 |
37.0 |
67.5 |
15 |
252.39 |
3.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
227218069 |
rs5781458 |
C |
CAT |
. |
PASS |
0.6566000 |
0.7752000 |
0.8681000 |
0.7276000 |
0.7638000 |
0.7508000 |
37.0 |
70.0 |
23 |
133.34 |
13.04 |
26.09 |
0 |
26.09 |
0/1 |
| chr1 |
227222515 |
rs61703280,rs113874316,rs112562427 |
G |
GACAA |
. |
PASS |
1.0000000 |
0.9986000 |
1.0000000 |
0.9980000 |
0.9796000 |
0.9954000 |
36.49 |
69.62 |
50 |
1000.00 |
2.53 |
98.00 |
0 |
98.00 |
1/1 |
| chr1 |
227227740 |
rs12026688 |
A |
C |
. |
PASS |
0.2292000 |
0.2579000 |
0.2401000 |
0.1918000 |
0.2086000 |
0.2238000 |
37.0 |
70.0 |
21 |
150.80 |
14.29 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
227288655 |
rs2104863 |
G |
A |
. |
PASS |
0.8366000 |
0.8343000 |
0.8720000 |
0.8111000 |
0.8190000 |
0.8349000 |
37.0 |
70.0 |
10 |
313.51 |
4.44 |
90.00 |
0 |
90.00 |
0/1 |
| chr1 |
227330759 |
rs12139502 |
A |
G |
. |
PASS |
0.6286000 |
0.7305000 |
0.7530000 |
0.7376000 |
0.8967000 |
0.7420000 |
36.05 |
70.0 |
39 |
1000.00 |
1.75 |
97.44 |
0 |
97.44 |
1/1 |
| chr1 |
227330783 |
rs58442036 |
G |
C |
. |
PASS |
0.1490000 |
0.1671000 |
0.1290000 |
0.1889000 |
0.1810000 |
0.1617000 |
34.75 |
70.0 |
25 |
520.43 |
3.00 |
64.00 |
0 |
64.00 |
0/1 |
| chr1 |
227381373 |
rs3768436 |
G |
T |
. |
PASS |
0.6051000 |
0.6383000 |
0.6577000 |
0.7187000 |
0.7403000 |
0.6695000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227381674 |
rs35780410 |
TA |
T |
. |
PASS |
0.2171000 |
0.2550000 |
0.2450000 |
0.1918000 |
0.2117000 |
0.2218000 |
36.45 |
70.0 |
23 |
342.21 |
12.65 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
227387143 |
rs3768435 |
A |
G |
. |
PASS |
0.6051000 |
0.6383000 |
0.6577000 |
0.7187000 |
0.7403000 |
0.6695000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227387361 |
rs3768434 |
A |
G |
. |
PASS |
0.9168000 |
0.7291000 |
0.6577000 |
0.8519000 |
0.7822000 |
0.7993000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227518041 |
rs4233226 |
C |
T |
. |
PASS |
0.4334000 |
0.4625000 |
0.4881000 |
0.3419000 |
0.4141000 |
0.4263000 |
36.29 |
70.0 |
62 |
1000.00 |
2.66 |
54.84 |
0 |
54.84 |
0/1 |
| chr1 |
227598446 |
rs3014290 |
T |
C |
. |
PASS |
0.7307000 |
0.7493000 |
0.8075000 |
0.8738000 |
0.7863000 |
0.7883000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227618420 |
rs6426453 |
G |
C |
. |
PASS |
0.2020000 |
0.1167000 |
0.1706000 |
0.1789000 |
0.1207000 |
0.1633000 |
37.0 |
70.0 |
11 |
97.35 |
27.27 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
227618550 |
rs6667621 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227622011 |
rs7546172 |
A |
G |
. |
PASS |
0.4402000 |
0.4942000 |
0.3889000 |
0.4145000 |
0.5317000 |
0.4501000 |
37.0 |
69.75 |
42 |
843.60 |
5.95 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
227680783 |
rs2814075 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.0 |
18 |
716.39 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227680835 |
rs2814074 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.0 |
16 |
295.30 |
20.83 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
227681475 |
rs4653844 |
T |
C |
. |
PASS |
0.6104000 |
0.7190000 |
0.7540000 |
0.7068000 |
0.6431000 |
0.6801000 |
36.61 |
60.87 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227681572 |
. |
CAG |
CCC |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.12 |
17 |
246.37 |
4.41 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
227681581 |
rs76425427 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.83 |
11 |
185.04 |
3.03 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
227681584 |
. |
ACC |
ATT |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
63.6 |
10 |
134.27 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
227694384 |
rs137940229 |
G |
C |
. |
PASS |
0.4380000 |
0.5346000 |
0.6131000 |
0.4712000 |
0.4376000 |
0.4932000 |
35.8 |
50.65 |
20 |
771.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227695923 |
rs35278598 |
CGG |
CCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
60.4 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227696002 |
rs2018828 |
A |
G |
. |
PASS |
0.3268000 |
0.5749000 |
0.4127000 |
0.6083000 |
0.4642000 |
0.4619000 |
37.0 |
60.3 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
227923081 |
rs7419238 |
G |
A |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.35 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228003649 |
rs45576341 |
C |
T |
. |
PASS |
0.0522000 |
0.1167000 |
0.2629000 |
0.0278000 |
0.0092000 |
0.0903000 |
36.54 |
70.0 |
49 |
894.06 |
2.51 |
53.06 |
0 |
53.06 |
0/1 |
| chr1 |
228003746 |
rs59917153 |
C |
T |
. |
PASS |
0.0522000 |
0.1167000 |
0.2609000 |
0.0278000 |
0.0092000 |
0.0899000 |
35.59 |
70.0 |
35 |
548.26 |
21.18 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
228004080 |
rs72750297 |
C |
T |
. |
PASS |
0.0620000 |
0.1182000 |
0.2629000 |
0.0278000 |
0.0092000 |
0.0931000 |
37.0 |
70.0 |
19 |
286.28 |
11.70 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
228033197 |
rs9426581 |
A |
G |
. |
PASS |
0.7738000 |
0.7637000 |
0.6915000 |
0.8439000 |
0.9141000 |
0.7973000 |
36.43 |
70.0 |
109 |
1000.00 |
8.15 |
57.80 |
0 |
57.80 |
0/1 |
| chr1 |
228112121 |
rs4653889 |
A |
G |
. |
PASS |
0.6861000 |
0.5576000 |
0.3899000 |
0.4801000 |
0.4243000 |
0.5162000 |
37.0 |
70.0 |
120 |
1000.00 |
10.48 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
228113163 |
rs3795768 |
A |
G |
. |
PASS |
0.8752000 |
0.6499000 |
0.6091000 |
0.6700000 |
0.5603000 |
0.6877000 |
36.88 |
70.0 |
103 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228199902 |
rs708117 |
G |
A |
. |
PASS |
0.3616000 |
0.4481000 |
0.6042000 |
0.5696000 |
0.6196000 |
0.5146000 |
36.38 |
70.0 |
125 |
1000.00 |
0.30 |
46.40 |
0 |
46.40 |
0/1 |
| chr1 |
228284991 |
rs2070960 |
C |
T |
. |
PASS |
0.0681000 |
0.0893000 |
0.1895000 |
0.0596000 |
0.0736000 |
0.0948000 |
36.43 |
70.0 |
46 |
694.25 |
2.90 |
45.65 |
0 |
45.65 |
0/1 |
| chr1 |
228289976 |
rs2295995 |
A |
G |
. |
PASS |
0.2542000 |
0.1441000 |
0.1538000 |
0.0696000 |
0.0736000 |
0.1464000 |
36.37 |
70.0 |
55 |
583.62 |
6.32 |
34.55 |
0 |
34.55 |
0/1 |
| chr1 |
228294300 |
rs12564763 |
T |
C |
. |
PASS |
0.4107000 |
0.5994000 |
0.6081000 |
0.6362000 |
0.7096000 |
0.5803000 |
35.29 |
70.0 |
12 |
211.79 |
0.00 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
228353651 |
rs55873785 |
G |
C |
. |
PASS |
0.1536000 |
0.3357000 |
0.3730000 |
0.4165000 |
0.5644000 |
0.3560000 |
37.0 |
70.0 |
107 |
1000.00 |
8.25 |
38.32 |
0 |
38.32 |
0/1 |
| chr1 |
228362682 |
rs2298014 |
G |
A |
. |
PASS |
0.0371000 |
0.2666000 |
0.0546000 |
0.3290000 |
0.1697000 |
0.1569000 |
36.72 |
70.0 |
80 |
1000.00 |
4.48 |
53.75 |
0 |
53.75 |
0/1 |
| chr1 |
228399482 |
rs11804508 |
C |
G |
. |
PASS |
0.6815000 |
0.6427000 |
0.8313000 |
0.6362000 |
0.8037000 |
0.7210000 |
36.69 |
70.0 |
136 |
1000.00 |
1.85 |
57.35 |
0 |
57.35 |
0/1 |
| chr1 |
228399766 |
rs55971985 |
T |
C |
. |
PASS |
0.7057000 |
0.6441000 |
0.8244000 |
0.6372000 |
0.8027000 |
0.7262000 |
35.88 |
70.0 |
65 |
1000.00 |
1.54 |
49.23 |
0 |
49.23 |
0/1 |
| chr1 |
228402047 |
rs1620111 |
A |
G |
. |
PASS |
0.6808000 |
0.6427000 |
0.8244000 |
0.6372000 |
0.8047000 |
0.7198000 |
36.68 |
70.0 |
132 |
1000.00 |
1.31 |
56.06 |
0 |
56.06 |
0/1 |
| chr1 |
228402121 |
rs1771487 |
A |
G |
. |
PASS |
0.6815000 |
0.6427000 |
0.8244000 |
0.6362000 |
0.8037000 |
0.7196000 |
36.71 |
70.0 |
151 |
1000.00 |
1.71 |
54.30 |
0 |
54.30 |
0/1 |
| chr1 |
228402283 |
rs1771486 |
C |
G |
. |
PASS |
0.6982000 |
0.9049000 |
0.8790000 |
0.9642000 |
0.9581000 |
0.8674000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228402303 |
rs72757833 |
C |
T |
. |
PASS |
0.0061000 |
0.0086000 |
0.0010000 |
0.0308000 |
0.0041000 |
0.0083866 |
37.0 |
70.0 |
13 |
304.33 |
17.09 |
69.23 |
0 |
69.23 |
0/1 |
| chr1 |
228402508 |
rs2776853 |
C |
T |
. |
PASS |
0.3086000 |
0.3530000 |
0.1706000 |
0.3618000 |
0.1963000 |
0.2758000 |
36.56 |
70.0 |
109 |
1000.00 |
0.95 |
49.54 |
0 |
49.54 |
0/1 |
| chr1 |
228404668 |
rs3795777 |
T |
C |
. |
PASS |
0.3616000 |
0.3473000 |
0.3502000 |
0.3688000 |
0.2474000 |
0.3365000 |
36.76 |
70.0 |
81 |
1000.00 |
0.15 |
60.49 |
0 |
60.49 |
0/1 |
| chr1 |
228407010 |
rs1757158 |
C |
T |
. |
PASS |
0.3427000 |
0.3545000 |
0.1756000 |
0.3579000 |
0.1973000 |
0.2853000 |
36.41 |
70.0 |
69 |
1000.00 |
5.73 |
59.42 |
0 |
59.42 |
0/1 |
| chr1 |
228407260 |
rs1771484 |
G |
A |
. |
PASS |
0.3147000 |
0.3487000 |
0.1746000 |
0.3588000 |
0.1973000 |
0.2772000 |
37.0 |
70.0 |
95 |
1000.00 |
0.97 |
56.84 |
0 |
56.84 |
0/1 |
| chr1 |
228412106 |
rs1771482 |
T |
C |
. |
PASS |
0.5885000 |
0.4020000 |
0.3839000 |
0.3658000 |
0.2577000 |
0.4121000 |
37.0 |
70.0 |
24 |
438.31 |
7.69 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
228412226 |
. |
GTG |
GCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
114 |
1000.00 |
7.42 |
34.21 |
0 |
34.21 |
0/1 |
| chr1 |
228412308 |
rs1757152 |
G |
A |
. |
PASS |
0.5885000 |
0.4020000 |
0.3839000 |
0.3678000 |
0.2577000 |
0.4125000 |
35.67 |
70.0 |
95 |
1000.00 |
10.06 |
37.89 |
0 |
37.89 |
0/1 |
| chr1 |
228431095 |
rs1771455 |
A |
G |
. |
PASS |
0.7095000 |
0.6542000 |
0.5992000 |
0.6412000 |
0.4571000 |
0.6166000 |
36.66 |
69.43 |
77 |
1000.00 |
18.18 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
228431930 |
rs10916293 |
C |
T |
. |
PASS |
0.7110000 |
0.6527000 |
0.5982000 |
0.6412000 |
0.4581000 |
0.6168000 |
36.29 |
68.76 |
27 |
584.35 |
1.31 |
62.96 |
0 |
62.96 |
0/1 |
| chr1 |
228433217 |
rs2487384 |
A |
G |
. |
PASS |
0.7095000 |
0.6542000 |
0.5992000 |
0.6412000 |
0.4571000 |
0.6166000 |
36.79 |
69.68 |
111 |
1000.00 |
6.16 |
51.35 |
0 |
51.35 |
0/1 |
| chr1 |
228434395 |
rs7517088 |
T |
C |
. |
PASS |
0.7133000 |
0.6542000 |
0.5992000 |
0.6412000 |
0.4571000 |
0.6176000 |
37.0 |
70.0 |
60 |
1000.00 |
6.67 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
228434467 |
rs7517108 |
T |
C |
. |
PASS |
0.8480000 |
0.6902000 |
0.6151000 |
0.6421000 |
0.4622000 |
0.6625000 |
37.0 |
70.0 |
46 |
956.87 |
4.19 |
58.70 |
0 |
58.70 |
0/1 |
| chr1 |
228437603 |
rs6426494 |
T |
C |
. |
PASS |
0.8540000 |
0.6873000 |
0.6151000 |
0.6412000 |
0.4632000 |
0.6637000 |
37.0 |
70.0 |
14 |
217.78 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
228444297 |
rs7532141 |
T |
G |
. |
PASS |
0.0620000 |
0.2651000 |
0.0575000 |
0.3231000 |
0.1544000 |
0.1597000 |
36.0 |
70.0 |
15 |
407.46 |
0.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
228444318 |
rs7532144 |
T |
G |
. |
PASS |
0.7133000 |
0.6513000 |
0.5992000 |
0.6402000 |
0.4571000 |
0.6170000 |
36.43 |
70.0 |
25 |
753.30 |
4.19 |
84.00 |
0 |
84.00 |
0/1 |
| chr1 |
228444565 |
rs7532342 |
T |
A |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.42 |
69.86 |
185 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228444741 |
rs3795780 |
C |
T |
. |
PASS |
0.7133000 |
0.6513000 |
0.5992000 |
0.6402000 |
0.4571000 |
0.6170000 |
37.0 |
70.0 |
17 |
375.83 |
0.00 |
64.71 |
0 |
64.71 |
0/1 |
| chr1 |
228447513 |
rs7525075 |
T |
G |
. |
PASS |
0.3601000 |
0.3761000 |
0.1915000 |
0.3569000 |
0.2025000 |
0.2969000 |
37.0 |
70.0 |
55 |
842.10 |
7.27 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
228447519 |
rs7525078 |
T |
A |
. |
PASS |
0.3601000 |
0.3761000 |
0.1915000 |
0.3569000 |
0.2025000 |
0.2969000 |
36.04 |
70.0 |
52 |
827.10 |
8.46 |
48.08 |
0 |
48.08 |
0/1 |
| chr1 |
228452016 |
rs185523702 |
G |
C |
. |
PASS |
0.0008000 |
0.0086000 |
0.0000000 |
0.0119000 |
0.0010000 |
0.0039936 |
36.32 |
69.92 |
154 |
1000.00 |
8.10 |
46.10 |
0 |
46.10 |
0/1 |
| chr1 |
228456147 |
rs878388 |
T |
C |
. |
PASS |
0.8510000 |
0.6974000 |
0.6131000 |
0.6710000 |
0.4693000 |
0.6711000 |
37.0 |
70.0 |
13 |
95.48 |
0.00 |
30.77 |
0 |
30.77 |
0/1 |
| chr1 |
228461129 |
rs1188724 |
A |
G |
. |
PASS |
0.8442000 |
0.6974000 |
0.7500000 |
0.6630000 |
0.4601000 |
0.6935000 |
36.27 |
70.0 |
66 |
1000.00 |
6.06 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
228461408 |
rs11398292 |
A |
AG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.41 |
70.0 |
56 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228464248 |
rs1188721 |
T |
G |
. |
PASS |
0.8495000 |
0.7003000 |
0.7500000 |
0.6640000 |
0.4601000 |
0.6955000 |
36.66 |
69.15 |
134 |
1000.00 |
3.72 |
52.99 |
0 |
52.99 |
0/1 |
| chr1 |
228464276 |
rs1188722 |
T |
C |
. |
PASS |
0.7330000 |
0.6931000 |
0.7500000 |
0.6630000 |
0.4601000 |
0.6635000 |
36.44 |
69.53 |
77 |
1000.00 |
7.19 |
55.84 |
0 |
55.84 |
0/1 |
| chr1 |
228464303 |
rs75280352 |
G |
T |
. |
PASS |
0.0008000 |
0.0101000 |
0.0000000 |
0.0139000 |
0.0010000 |
0.0045927 |
36.6 |
70.0 |
48 |
1000.00 |
15.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
228464842 |
rs936885 |
C |
G |
. |
PASS |
0.8487000 |
0.7017000 |
0.7490000 |
0.6590000 |
0.4571000 |
0.6937000 |
36.57 |
70.0 |
72 |
904.22 |
15.48 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
228465346 |
rs493945 |
A |
G |
. |
PASS |
0.3585000 |
0.3617000 |
0.3780000 |
0.3638000 |
0.1851000 |
0.3301000 |
36.71 |
70.0 |
87 |
1000.00 |
8.75 |
47.13 |
0 |
47.13 |
0/1 |
| chr1 |
228465370 |
rs867599 |
T |
G |
. |
PASS |
0.7542000 |
0.6988000 |
0.7440000 |
0.6700000 |
0.4571000 |
0.6695000 |
37.0 |
70.0 |
84 |
1000.00 |
7.14 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
228465403 |
rs13376694 |
G |
T |
. |
PASS |
0.0257000 |
0.0231000 |
0.3413000 |
0.0507000 |
0.0716000 |
0.1028000 |
35.84 |
70.0 |
71 |
1000.00 |
0.64 |
43.66 |
0 |
43.66 |
0/1 |
| chr1 |
228465674 |
rs2307995 |
C |
CAAG |
. |
PASS |
0.7292000 |
0.6888000 |
0.4306000 |
0.6392000 |
0.3804000 |
0.5773000 |
36.5 |
70.0 |
37 |
495.89 |
8.45 |
43.24 |
0 |
43.24 |
0/1 |
| chr1 |
228468566 |
rs4653934 |
A |
G |
. |
PASS |
0.1876000 |
0.3545000 |
0.1845000 |
0.3489000 |
0.1738000 |
0.2398000 |
37.0 |
70.0 |
32 |
163.61 |
1.79 |
21.88 |
0 |
21.88 |
0/1 |
| chr1 |
228471046 |
rs41303079 |
C |
T |
. |
PASS |
0.0446000 |
0.2594000 |
0.0565000 |
0.3171000 |
0.1258000 |
0.1474000 |
36.5 |
70.0 |
40 |
837.61 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
228471379 |
rs56168609 |
G |
C |
. |
PASS |
0.1989000 |
0.3242000 |
0.1528000 |
0.3499000 |
0.1626000 |
0.2302000 |
36.08 |
70.0 |
72 |
808.68 |
12.39 |
36.11 |
0 |
36.11 |
0/1 |
| chr1 |
228480282 |
rs1150908 |
A |
G |
. |
PASS |
0.8669000 |
0.7147000 |
0.7490000 |
0.6720000 |
0.4366000 |
0.6989000 |
37.0 |
70.0 |
142 |
1000.00 |
1.49 |
49.30 |
0 |
49.30 |
0/1 |
| chr1 |
228480964 |
rs10158357 |
A |
G |
. |
PASS |
0.3956000 |
0.3818000 |
0.5030000 |
0.3787000 |
0.2342000 |
0.3804000 |
37.0 |
70.0 |
10 |
146.28 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
228482010 |
rs449133 |
C |
T |
. |
PASS |
0.4720000 |
0.4179000 |
0.2470000 |
0.4821000 |
0.2710000 |
0.3820000 |
36.7 |
70.0 |
140 |
1000.00 |
1.59 |
56.43 |
0 |
56.43 |
0/1 |
| chr1 |
228492044 |
rs1150910 |
G |
A |
. |
PASS |
0.4221000 |
0.4121000 |
0.2490000 |
0.4861000 |
0.2710000 |
0.3692000 |
36.56 |
70.0 |
59 |
905.74 |
0.13 |
45.76 |
0 |
45.76 |
0/1 |
| chr1 |
228494382 |
rs1150911 |
T |
G |
. |
PASS |
0.4713000 |
0.4207000 |
0.4970000 |
0.4861000 |
0.2710000 |
0.3834000 |
37.0 |
70.0 |
33 |
824.78 |
5.53 |
69.70 |
0 |
69.70 |
0/1 |
| chr1 |
228494790 |
rs435776 |
G |
A |
. |
PASS |
0.0605000 |
0.3775000 |
0.2490000 |
0.4841000 |
0.2710000 |
0.2686000 |
36.64 |
70.0 |
88 |
1000.00 |
10.61 |
37.50 |
0 |
37.50 |
0/1 |
| chr1 |
228497053 |
rs379620 |
A |
G |
. |
PASS |
0.8661000 |
0.7147000 |
0.7460000 |
0.6730000 |
0.4387000 |
0.6987000 |
36.45 |
70.0 |
42 |
748.06 |
0.43 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
228503677 |
rs1150912 |
A |
G |
. |
PASS |
0.8722000 |
0.7147000 |
0.7480000 |
0.6740000 |
0.4387000 |
0.7009000 |
36.48 |
70.0 |
89 |
1000.00 |
3.08 |
51.69 |
0 |
51.69 |
0/1 |
| chr1 |
228504472 |
rs1188732 |
T |
C |
. |
PASS |
0.8661000 |
0.7147000 |
0.7480000 |
0.6740000 |
0.4387000 |
0.6993000 |
36.69 |
70.0 |
159 |
1000.00 |
4.31 |
49.06 |
0 |
49.06 |
0/1 |
| chr1 |
228504670 |
rs11810627 |
C |
T |
. |
PASS |
0.2791000 |
0.4006000 |
0.2490000 |
0.4861000 |
0.2730000 |
0.3303000 |
36.65 |
70.0 |
151 |
1000.00 |
9.64 |
45.03 |
0 |
45.03 |
0/1 |
| chr1 |
228504701 |
rs111792077 |
G |
GCTCC |
. |
PASS |
0.8654000 |
0.7147000 |
0.7480000 |
0.6740000 |
0.4387000 |
0.6991000 |
36.67 |
70.0 |
137 |
1000.00 |
3.64 |
41.61 |
0 |
41.61 |
0/1 |
| chr1 |
228505668 |
rs1188729 |
C |
G |
. |
PASS |
0.8661000 |
0.7147000 |
0.7480000 |
0.6740000 |
0.4387000 |
0.6993000 |
36.5 |
70.0 |
155 |
1000.00 |
8.28 |
46.45 |
0 |
46.45 |
0/1 |
| chr1 |
228505699 |
rs1188728 |
T |
C |
. |
PASS |
0.8888000 |
0.7190000 |
0.7480000 |
0.6740000 |
0.4387000 |
0.7059000 |
36.72 |
70.0 |
116 |
1000.00 |
2.85 |
37.07 |
0 |
37.07 |
0/1 |
| chr1 |
228509427 |
rs373610 |
A |
G |
. |
PASS |
0.8684000 |
0.6758000 |
0.7044000 |
0.6740000 |
0.4335000 |
0.6847000 |
36.69 |
70.0 |
133 |
1000.00 |
7.56 |
58.65 |
0 |
58.65 |
0/1 |
| chr1 |
228520880 |
rs416564 |
C |
T |
. |
PASS |
0.4433000 |
0.3890000 |
0.2490000 |
0.4215000 |
0.1851000 |
0.3419000 |
35.86 |
70.0 |
58 |
646.12 |
0.49 |
36.21 |
0 |
36.21 |
0/1 |
| chr1 |
228520973 |
rs369909 |
C |
G |
. |
PASS |
0.4183000 |
0.3847000 |
0.2490000 |
0.4205000 |
0.1881000 |
0.3351000 |
36.73 |
70.0 |
97 |
1000.00 |
8.86 |
45.36 |
0 |
45.36 |
0/1 |
| chr1 |
228523005 |
rs60787858 |
T |
TG |
. |
PASS |
0.4871000 |
0.3631000 |
0.5734000 |
0.4990000 |
0.3834000 |
0.4694000 |
34.33 |
70.0 |
31 |
210.57 |
1.43 |
29.03 |
0 |
29.03 |
0/1 |
| chr1 |
228523442 |
rs1684868 |
T |
C |
. |
PASS |
0.4985000 |
0.4280000 |
0.5655000 |
0.5129000 |
0.3620000 |
0.4784000 |
37.0 |
69.05 |
36 |
736.35 |
1.59 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
228523446 |
. |
CTG |
CCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
68.95 |
38 |
777.84 |
2.63 |
42.11 |
0 |
100.00 |
0/1 |
| chr1 |
228523446 |
. |
CTG |
CCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.37 |
68.95 |
38 |
777.84 |
1.91 |
57.89 |
0 |
100.00 |
0/1 |
| chr1 |
228523618 |
rs1757160 |
G |
A |
. |
PASS |
0.4834000 |
0.4265000 |
0.5655000 |
0.5129000 |
0.3620000 |
0.4742000 |
37.0 |
70.0 |
54 |
1000.00 |
3.47 |
59.26 |
0 |
59.26 |
0/1 |
| chr1 |
228524919 |
rs3795807 |
G |
A |
. |
PASS |
0.0575000 |
0.3458000 |
0.2500000 |
0.4185000 |
0.2178000 |
0.2400000 |
35.29 |
70.0 |
41 |
685.27 |
6.97 |
51.22 |
0 |
51.22 |
0/1 |
| chr1 |
228524961 |
rs3795808 |
C |
A |
. |
PASS |
0.0575000 |
0.3458000 |
0.2500000 |
0.4185000 |
0.2168000 |
0.2398000 |
36.54 |
70.0 |
57 |
865.83 |
10.12 |
45.61 |
0 |
45.61 |
0/1 |
| chr1 |
228525627 |
rs1757127 |
C |
A |
. |
PASS |
0.0575000 |
0.3458000 |
0.2500000 |
0.4185000 |
0.2188000 |
0.2402000 |
35.45 |
70.0 |
57 |
1000.00 |
0.34 |
54.39 |
0 |
54.39 |
0/1 |
| chr1 |
228525898 |
rs1188717 |
C |
G |
. |
PASS |
0.6672000 |
0.4654000 |
0.5962000 |
0.5199000 |
0.3753000 |
0.5383000 |
36.5 |
70.0 |
33 |
854.53 |
9.85 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
228526486 |
rs58480216 |
G |
A |
. |
PASS |
0.0590000 |
0.2651000 |
0.2470000 |
0.4195000 |
0.2157000 |
0.2284000 |
36.2 |
70.0 |
26 |
503.82 |
3.08 |
57.69 |
0 |
57.69 |
0/1 |
| chr1 |
228526665 |
rs505629 |
T |
C |
. |
PASS |
0.5522000 |
0.4294000 |
0.5665000 |
0.5209000 |
0.3609000 |
0.4944000 |
36.39 |
70.0 |
92 |
1000.00 |
1.25 |
64.13 |
0 |
64.13 |
0/1 |
| chr1 |
228526742 |
rs10634565 |
C |
CCACA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
150 |
1000.00 |
0.31 |
26.00 |
0 |
76.00 |
0/1 |
| chr1 |
228526742 |
. |
C |
CCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
70.0 |
150 |
1000.00 |
7.07 |
48.67 |
0 |
76.00 |
0/1 |
| chr1 |
228528412 |
rs1150916 |
G |
A |
. |
PASS |
0.4561000 |
0.3847000 |
0.2520000 |
0.4215000 |
0.2188000 |
0.3518000 |
36.45 |
70.0 |
67 |
672.80 |
1.49 |
32.84 |
0 |
32.84 |
0/1 |
| chr1 |
228528563 |
rs1188710 |
C |
G |
. |
PASS |
0.6679000 |
0.4654000 |
0.5942000 |
0.5229000 |
0.3753000 |
0.5387000 |
36.76 |
70.0 |
116 |
1000.00 |
2.13 |
43.97 |
0 |
43.97 |
0/1 |
| chr1 |
228536557 |
rs1872740 |
G |
A |
. |
PASS |
0.3306000 |
0.5346000 |
0.4028000 |
0.4781000 |
0.6288000 |
0.4613000 |
36.41 |
70.0 |
78 |
1000.00 |
6.82 |
52.56 |
0 |
52.56 |
0/1 |
| chr1 |
228540542 |
rs6695278 |
G |
A |
. |
PASS |
0.3306000 |
0.5360000 |
0.4028000 |
0.4781000 |
0.6288000 |
0.4615000 |
37.0 |
70.0 |
18 |
414.60 |
16.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
228547901 |
rs12035900 |
C |
T |
. |
PASS |
0.1142000 |
0.3112000 |
0.2669000 |
0.3280000 |
0.5419000 |
0.2987000 |
36.55 |
70.0 |
96 |
1000.00 |
5.27 |
55.21 |
0 |
55.21 |
0/1 |
| chr1 |
228556788 |
rs3738685 |
C |
T |
. |
PASS |
0.1838000 |
0.3141000 |
0.2510000 |
0.3628000 |
0.5378000 |
0.3205000 |
37.0 |
70.0 |
12 |
265.57 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
228559967 |
rs72762066 |
C |
T |
. |
PASS |
0.0000000 |
0.0072000 |
0.0000000 |
0.0159000 |
0.0041000 |
0.0049920 |
37.0 |
70.0 |
86 |
1000.00 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
228559994 |
rs500049 |
C |
T |
. |
PASS |
0.7080000 |
0.3890000 |
0.5625000 |
0.5040000 |
0.6851000 |
0.5891000 |
36.73 |
70.0 |
95 |
1000.00 |
3.83 |
46.32 |
0 |
46.32 |
0/1 |
| chr1 |
228560139 |
rs498382 |
A |
G |
. |
PASS |
0.9962000 |
0.9640000 |
1.0000000 |
0.9066000 |
0.9949000 |
0.9742000 |
36.61 |
70.0 |
93 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228560700 |
rs512253 |
T |
C |
. |
PASS |
0.9365000 |
0.6398000 |
0.7520000 |
0.5636000 |
0.8067000 |
0.7580000 |
37.0 |
70.0 |
83 |
929.05 |
4.32 |
34.94 |
0 |
34.94 |
0/1 |
| chr1 |
228562350 |
rs72762068 |
T |
C |
. |
PASS |
0.0008000 |
0.0101000 |
0.0000000 |
0.0149000 |
0.0031000 |
0.0051917 |
36.5 |
70.0 |
90 |
1000.00 |
3.89 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
228612838 |
rs2230656 |
G |
T |
. |
PASS |
0.3116000 |
0.8977000 |
0.6895000 |
0.8847000 |
0.8558000 |
0.6903000 |
35.91 |
70.0 |
88 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228613052 |
rs1188474 |
T |
C |
. |
PASS |
0.9349000 |
0.9568000 |
0.6954000 |
0.8907000 |
0.8599000 |
0.8662000 |
36.5 |
69.72 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228644997 |
rs72763954 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0040000 |
0.0010000 |
0.0009984 |
37.0 |
70.0 |
11 |
143.27 |
0.00 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
228645063 |
rs10916317 |
A |
G |
. |
PASS |
0.9463000 |
0.9337000 |
0.7044000 |
0.7942000 |
0.8517000 |
0.8468000 |
36.68 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228681749 |
rs3795817 |
C |
T |
. |
PASS |
0.1838000 |
0.6023000 |
0.4385000 |
0.5457000 |
0.6329000 |
0.4535000 |
37.0 |
70.0 |
15 |
591.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228699477 |
rs6665115 |
T |
C |
. |
PASS |
0.2958000 |
0.6412000 |
0.4444000 |
0.5905000 |
0.6524000 |
0.5024000 |
36.8 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
228871693 |
rs3738073 |
C |
T |
. |
PASS |
0.0893000 |
0.0951000 |
0.0427000 |
0.1720000 |
0.2515000 |
0.1290000 |
36.66 |
70.0 |
91 |
1000.00 |
9.67 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
228886479 |
rs881298 |
G |
C |
. |
PASS |
0.6543000 |
0.4611000 |
0.3740000 |
0.4115000 |
0.4571000 |
0.4838000 |
37.0 |
70.0 |
49 |
943.69 |
5.74 |
55.10 |
0 |
55.10 |
0/1 |
| chr1 |
229200967 |
rs9426591 |
C |
A |
. |
PASS |
0.5061000 |
0.5821000 |
0.5734000 |
0.5736000 |
0.5828000 |
0.5587000 |
36.87 |
70.0 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
229200985 |
rs9426592 |
G |
A |
. |
PASS |
0.3018000 |
0.4582000 |
0.2748000 |
0.4652000 |
0.4949000 |
0.3886000 |
36.27 |
70.0 |
110 |
1000.00 |
3.86 |
44.55 |
0 |
44.55 |
0/1 |
| chr1 |
229407233 |
rs7519709 |
G |
C |
. |
PASS |
0.4334000 |
0.5130000 |
0.4087000 |
0.4264000 |
0.3732000 |
0.4263000 |
35.0 |
70.0 |
18 |
147.81 |
0.00 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
229422193 |
rs237764 |
T |
C |
. |
PASS |
0.7209000 |
0.6484000 |
0.4940000 |
0.6730000 |
0.4734000 |
0.6072000 |
36.04 |
70.0 |
25 |
984.75 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
229438828 |
rs237787 |
G |
A |
. |
PASS |
0.7171000 |
0.6455000 |
0.4921000 |
0.6710000 |
0.4734000 |
0.6050000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
229461024 |
rs2282083 |
C |
T |
. |
PASS |
0.2126000 |
0.5101000 |
0.3859000 |
0.4493000 |
0.3282000 |
0.3588000 |
35.15 |
70.0 |
49 |
858.04 |
2.51 |
53.06 |
0 |
53.06 |
0/1 |
| chr1 |
229545573 |
rs871276 |
A |
G |
. |
PASS |
0.4977000 |
0.5403000 |
0.3125000 |
0.4394000 |
0.4693000 |
0.4491000 |
37.0 |
70.0 |
62 |
1000.00 |
5.44 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
229568231 |
rs527621 |
T |
G |
. |
PASS |
1.0000000 |
0.9971000 |
0.9990000 |
0.9990000 |
0.9990000 |
0.9990000 |
37.0 |
70.0 |
19 |
754.01 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
229657234 |
rs72751736 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
27 |
353.64 |
24.24 |
40.74 |
0 |
55.56 |
0/1 |
| chr1 |
229663064 |
rs140542677,rs113712941,rs55677147 |
GAGGAA |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.71 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
229667404 |
rs72751738 |
C |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
36.33 |
70.0 |
97 |
1000.00 |
4.52 |
37.11 |
0 |
37.11 |
0/1 |
| chr1 |
229730452 |
rs2295625 |
G |
A |
. |
PASS |
0.0938000 |
0.2666000 |
0.3254000 |
0.4612000 |
0.4284000 |
0.3035000 |
35.71 |
69.29 |
53 |
941.54 |
1.48 |
52.83 |
0 |
52.83 |
0/1 |
| chr1 |
229738170 |
rs3753886 |
T |
G |
. |
PASS |
0.4887000 |
0.5447000 |
0.7639000 |
0.5179000 |
0.5706000 |
0.5737000 |
37.0 |
70.0 |
66 |
683.67 |
15.15 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
229738236 |
rs4925500 |
G |
A |
. |
PASS |
0.9281000 |
0.7219000 |
0.9415000 |
0.7614000 |
0.7914000 |
0.8421000 |
37.0 |
70.0 |
64 |
741.63 |
6.11 |
35.94 |
0 |
39.06 |
0/1 |
| chr1 |
229772693 |
rs3811473 |
T |
G |
. |
PASS |
0.4796000 |
0.5432000 |
0.7649000 |
0.5189000 |
0.5726000 |
0.5719000 |
36.1 |
70.0 |
68 |
1000.00 |
5.00 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
229781744 |
rs2274994 |
T |
C |
. |
PASS |
0.4788000 |
0.5432000 |
0.7639000 |
0.5179000 |
0.5716000 |
0.5711000 |
37.0 |
70.0 |
28 |
384.49 |
4.76 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
229783236 |
rs6587349 |
T |
C |
. |
PASS |
0.9902000 |
0.9467000 |
1.0000000 |
0.8807000 |
0.9867000 |
0.9635000 |
37.0 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
229783240 |
rs2274995 |
T |
C |
. |
PASS |
0.4433000 |
0.5418000 |
0.7639000 |
0.5179000 |
0.5716000 |
0.5615000 |
37.0 |
70.0 |
44 |
754.04 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
229787030 |
rs12142450 |
G |
A |
. |
PASS |
0.0008000 |
0.0101000 |
0.0010000 |
0.0050000 |
0.0174000 |
0.0061901 |
36.2 |
70.0 |
51 |
1000.00 |
0.78 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
229790048 |
rs7521953 |
A |
G |
. |
PASS |
0.5030000 |
0.5778000 |
0.8502000 |
0.5457000 |
0.5654000 |
0.6040000 |
36.55 |
70.0 |
150 |
1000.00 |
3.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
229795070 |
rs1048306 |
T |
G |
. |
PASS |
0.5083000 |
0.5778000 |
0.8343000 |
0.5457000 |
0.5644000 |
0.6020000 |
36.37 |
70.0 |
29 |
657.72 |
6.17 |
65.52 |
0 |
65.52 |
0/1 |
| chr1 |
229825051 |
rs6700582 |
T |
G |
. |
PASS |
0.1747000 |
0.2507000 |
0.3641000 |
0.2594000 |
0.4039000 |
0.2851000 |
37.0 |
70.0 |
22 |
879.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
229841139 |
rs7535031 |
C |
T |
. |
PASS |
0.5061000 |
0.4784000 |
0.8135000 |
0.3847000 |
0.5031000 |
0.5391000 |
36.25 |
70.0 |
16 |
620.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
229851411 |
rs12047405 |
G |
T |
. |
PASS |
0.3759000 |
0.4121000 |
0.6815000 |
0.3260000 |
0.4877000 |
0.4543000 |
36.4 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
230232080 |
rs7529009 |
A |
G |
. |
PASS |
0.5091000 |
0.4553000 |
0.4554000 |
0.4274000 |
0.5225000 |
0.4770000 |
36.32 |
70.0 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
230371883 |
rs3811488 |
G |
A |
. |
PASS |
0.8699000 |
0.6758000 |
0.8978000 |
0.3986000 |
0.4990000 |
0.6815000 |
35.29 |
68.57 |
55 |
896.77 |
9.70 |
49.09 |
0 |
50.91 |
0/1 |
| chr1 |
230384937 |
rs3748006 |
T |
C |
. |
PASS |
0.1906000 |
0.3458000 |
0.5992000 |
0.0547000 |
0.1217000 |
0.2536000 |
36.08 |
70.0 |
85 |
1000.00 |
2.90 |
45.88 |
0 |
45.88 |
0/1 |
| chr1 |
230385148 |
rs3748009 |
C |
T |
. |
PASS |
0.6021000 |
0.6167000 |
0.7282000 |
0.3926000 |
0.3998000 |
0.5479000 |
37.0 |
70.0 |
10 |
104.51 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
230386174 |
rs2273965 |
C |
T |
. |
PASS |
0.1120000 |
0.3429000 |
0.5992000 |
0.0537000 |
0.1217000 |
0.2322000 |
36.65 |
70.0 |
55 |
1000.00 |
1.28 |
61.82 |
0 |
61.82 |
0/1 |
| chr1 |
230415025 |
rs6698963 |
A |
G |
. |
PASS |
0.8911000 |
0.6556000 |
0.9474000 |
0.4553000 |
0.5869000 |
0.7228000 |
37.0 |
70.0 |
51 |
983.60 |
5.46 |
54.90 |
0 |
54.90 |
0/1 |
| chr1 |
230415148 |
rs2273970 |
G |
A |
. |
PASS |
0.0121000 |
0.1427000 |
0.3115000 |
0.0437000 |
0.0971000 |
0.1134000 |
36.39 |
70.0 |
111 |
1000.00 |
2.38 |
53.15 |
0 |
53.15 |
0/1 |
| chr1 |
230530141 |
rs12406944 |
G |
A |
. |
PASS |
0.0749000 |
0.4409000 |
0.4058000 |
0.3211000 |
0.4294000 |
0.3109000 |
35.8 |
70.0 |
20 |
313.03 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
230530229 |
rs35768939 |
A |
AGT |
. |
PASS |
0.4584000 |
0.5130000 |
0.4256000 |
0.4066000 |
0.5276000 |
0.4625000 |
36.11 |
70.0 |
83 |
1000.00 |
10.84 |
65.06 |
0 |
65.06 |
0/1 |
| chr1 |
230530315 |
rs12407923 |
C |
T |
. |
PASS |
0.0741000 |
0.4409000 |
0.4077000 |
0.3211000 |
0.4305000 |
0.3113000 |
35.29 |
70.0 |
40 |
968.66 |
17.14 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
230561700 |
. |
G |
GC |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
36.72 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
230778491 |
rs4846864 |
G |
C |
. |
PASS |
0.8343000 |
0.8141000 |
0.9504000 |
0.6610000 |
0.8364000 |
0.8205000 |
36.25 |
70.0 |
44 |
487.27 |
6.82 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
230796375 |
rs3736982 |
A |
C |
. |
PASS |
0.3328000 |
0.2176000 |
0.4365000 |
0.1938000 |
0.4018000 |
0.3233000 |
37.0 |
70.0 |
10 |
100.37 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
230820763 |
rs150768186 |
C |
CACATT |
. |
PASS |
0.1082000 |
0.2334000 |
0.1012000 |
0.4334000 |
0.3313000 |
0.2330000 |
36.25 |
70.0 |
23 |
156.10 |
13.66 |
30.43 |
0 |
30.43 |
0/1 |
| chr1 |
230820780 |
rs3215851 |
TA |
T |
. |
PASS |
0.3351000 |
0.2594000 |
0.2867000 |
0.3171000 |
0.3119000 |
0.3067000 |
35.88 |
70.0 |
29 |
561.76 |
8.11 |
58.62 |
0 |
58.62 |
0/1 |
| chr1 |
230822903 |
rs2493147 |
C |
T |
. |
PASS |
0.0045000 |
0.0591000 |
0.0010000 |
0.1034000 |
0.0204000 |
0.0343000 |
37.0 |
70.0 |
40 |
724.31 |
23.81 |
52.50 |
0 |
52.50 |
0/1 |
| chr1 |
230825942 |
rs3000064 |
A |
G |
. |
PASS |
0.0855000 |
0.2334000 |
0.1012000 |
0.4324000 |
0.3282000 |
0.2262000 |
35.29 |
70.0 |
24 |
456.06 |
16.67 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
230828987 |
rs2478534 |
C |
A |
. |
PASS |
0.0855000 |
0.2320000 |
0.1012000 |
0.4304000 |
0.3282000 |
0.2256000 |
37.0 |
70.0 |
13 |
174.87 |
28.21 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
230841687 |
rs7080 |
T |
C |
. |
PASS |
0.9962000 |
0.9510000 |
1.0000000 |
0.9155000 |
0.9867000 |
0.9726000 |
37.0 |
70.0 |
39 |
936.17 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
230845794 |
rs699 |
A |
G |
. |
PASS |
0.9032000 |
0.6354000 |
0.8532000 |
0.4115000 |
0.6360000 |
0.7051000 |
36.23 |
70.0 |
93 |
1000.00 |
13.82 |
50.54 |
0 |
50.54 |
0/1 |
| chr1 |
230883466 |
rs12143120 |
C |
T |
. |
PASS |
0.3646000 |
0.4294000 |
0.3313000 |
0.4314000 |
0.2771000 |
0.3632000 |
36.62 |
70.0 |
62 |
1000.00 |
2.82 |
51.61 |
0 |
51.61 |
0/1 |
| chr1 |
230883484 |
rs6690251 |
T |
C |
. |
PASS |
0.4947000 |
0.5937000 |
0.3571000 |
0.7137000 |
0.3415000 |
0.4948000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
230883499 |
rs6690254 |
T |
C |
. |
PASS |
0.4947000 |
0.5922000 |
0.3571000 |
0.7147000 |
0.3425000 |
0.4950000 |
37.0 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
230891248 |
rs2493145 |
C |
T |
. |
PASS |
0.3245000 |
0.4222000 |
0.1657000 |
0.3966000 |
0.2505000 |
0.3061000 |
37.0 |
68.18 |
19 |
369.81 |
9.57 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
230898494 |
rs2282319 |
C |
T |
. |
PASS |
0.2716000 |
0.4452000 |
0.4385000 |
0.3797000 |
0.1789000 |
0.3329000 |
36.6 |
70.0 |
138 |
1000.00 |
3.77 |
43.48 |
0 |
43.48 |
0/1 |
| chr1 |
230898615 |
rs3215985 |
G |
GA |
. |
PASS |
0.1899000 |
0.3040000 |
0.2004000 |
0.3400000 |
0.1278000 |
0.2258000 |
37.0 |
70.0 |
39 |
586.42 |
5.13 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
230903234 |
rs11122590 |
A |
G |
. |
PASS |
0.6331000 |
0.5259000 |
0.5506000 |
0.5278000 |
0.5031000 |
0.5551000 |
37.0 |
70.0 |
30 |
211.40 |
23.33 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
230903350 |
rs3828126 |
T |
C |
. |
PASS |
0.1959000 |
0.2939000 |
0.1984000 |
0.3370000 |
0.1258000 |
0.2246000 |
37.0 |
69.41 |
68 |
1000.00 |
2.94 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
230904911 |
rs11122593 |
C |
T |
. |
PASS |
0.0159000 |
0.2925000 |
0.1230000 |
0.3400000 |
0.0808000 |
0.1536000 |
36.33 |
70.0 |
30 |
617.09 |
11.11 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
231042732 |
rs3811502 |
T |
A |
. |
PASS |
0.4198000 |
0.6556000 |
0.5446000 |
0.5338000 |
0.4969000 |
0.5156000 |
35.5 |
70.0 |
50 |
457.19 |
4.00 |
32.00 |
0 |
32.00 |
0/1 |
| chr1 |
231044410 |
rs72762647 |
C |
T |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0070000 |
0.0000000 |
0.0017971 |
37.0 |
70.0 |
21 |
405.56 |
7.14 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
231047310 |
rs10580953,rs10568287 |
TAC |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
19 |
151.40 |
19.30 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
231057247 |
rs2275333 |
A |
T |
. |
PASS |
0.1354000 |
0.1167000 |
0.3879000 |
0.1700000 |
0.2577000 |
0.2145000 |
37.0 |
70.0 |
25 |
389.37 |
11.33 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
231060736 |
rs3748775 |
T |
C |
. |
PASS |
0.3351000 |
0.6297000 |
0.5565000 |
0.5070000 |
0.4898000 |
0.4852000 |
37.0 |
70.0 |
30 |
127.85 |
20.00 |
20.00 |
0 |
20.00 |
0/1 |
| chr1 |
231064578 |
rs5781610,rs5781609 |
T |
TCTC |
. |
PASS |
0.7020000 |
0.7767000 |
0.5903000 |
0.6680000 |
0.6053000 |
0.6641000 |
36.33 |
70.0 |
15 |
144.41 |
13.33 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
231064611 |
rs950029 |
G |
A |
. |
PASS |
0.3343000 |
0.6297000 |
0.5556000 |
0.5070000 |
0.4888000 |
0.4846000 |
37.0 |
70.0 |
33 |
452.98 |
16.88 |
42.42 |
0 |
42.42 |
0/1 |
| chr1 |
231067236 |
rs11122624 |
C |
T |
. |
PASS |
0.3343000 |
0.6297000 |
0.5565000 |
0.5070000 |
0.4898000 |
0.4850000 |
37.0 |
70.0 |
37 |
566.25 |
17.81 |
45.95 |
0 |
45.95 |
0/1 |
| chr1 |
231067318 |
rs11122625 |
G |
T |
. |
PASS |
0.3321000 |
0.6297000 |
0.5565000 |
0.5070000 |
0.4898000 |
0.4844000 |
35.29 |
70.0 |
11 |
210.65 |
12.99 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
231114465 |
rs76376323 |
C |
G |
. |
PASS |
0.1498000 |
0.1729000 |
0.3899000 |
0.2396000 |
0.3436000 |
0.2572000 |
36.56 |
70.0 |
52 |
922.66 |
6.98 |
51.92 |
0 |
51.92 |
0/1 |
| chr1 |
231114595 |
rs11122174 |
C |
T |
. |
PASS |
0.4183000 |
0.3631000 |
0.6458000 |
0.4274000 |
0.6892000 |
0.5112000 |
36.67 |
70.0 |
63 |
1000.00 |
2.38 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
231124055 |
rs10779804 |
T |
C |
. |
PASS |
0.3139000 |
0.2320000 |
0.5129000 |
0.3469000 |
0.4959000 |
0.3848000 |
36.25 |
70.0 |
36 |
515.49 |
4.17 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
231157721 |
rs4311872 |
T |
C |
. |
PASS |
0.3926000 |
0.5807000 |
0.3740000 |
0.5934000 |
0.2955000 |
0.4363000 |
37.0 |
70.0 |
42 |
551.21 |
15.13 |
40.48 |
0 |
40.48 |
0/1 |
| chr1 |
231157729 |
rs4394639 |
A |
C |
. |
PASS |
0.0575000 |
0.3559000 |
0.2669000 |
0.1998000 |
0.1033000 |
0.1785000 |
36.2 |
70.0 |
36 |
469.58 |
27.78 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
231176064 |
rs375041957 |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
11 |
91.94 |
31.82 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
231203688 |
rs7549182 |
C |
T |
. |
PASS |
0.6899000 |
0.5706000 |
0.4514000 |
0.6332000 |
0.4489000 |
0.5669000 |
35.82 |
69.61 |
92 |
1000.00 |
0.26 |
55.43 |
0 |
55.43 |
0/1 |
| chr1 |
231203881 |
rs11122220 |
G |
T |
. |
PASS |
0.1218000 |
0.3401000 |
0.2966000 |
0.3459000 |
0.3814000 |
0.2829000 |
37.0 |
70.0 |
13 |
133.10 |
0.00 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
231323140 |
rs6693752 |
T |
A |
. |
PASS |
0.9115000 |
0.8833000 |
0.8859000 |
0.9314000 |
0.9315000 |
0.9103000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
231376806 |
rs2274067 |
G |
C |
. |
PASS |
0.0356000 |
0.2003000 |
0.0863000 |
0.0616000 |
0.1084000 |
0.0881000 |
36.48 |
70.0 |
59 |
734.50 |
20.04 |
38.98 |
0 |
38.98 |
0/1 |
| chr1 |
231401204 |
rs6702011 |
T |
C |
. |
PASS |
0.2738000 |
0.3718000 |
0.2411000 |
0.2306000 |
0.2515000 |
0.2678000 |
36.52 |
69.2 |
46 |
861.32 |
5.39 |
54.35 |
0 |
54.35 |
0/1 |
| chr1 |
231401596 |
rs532226 |
T |
C |
. |
PASS |
0.5242000 |
0.6196000 |
0.6300000 |
0.5189000 |
0.6145000 |
0.5753000 |
35.86 |
70.0 |
38 |
706.32 |
7.02 |
55.26 |
0 |
55.26 |
0/1 |
| chr1 |
231401902 |
rs574553 |
G |
A |
. |
PASS |
0.7012000 |
0.6254000 |
0.6339000 |
0.5318000 |
0.6268000 |
0.6286000 |
36.56 |
70.0 |
47 |
941.86 |
9.93 |
57.45 |
0 |
57.45 |
0/1 |
| chr1 |
231471268 |
rs35468792 |
AT |
A |
. |
PASS |
0.3185000 |
0.3343000 |
0.2877000 |
0.1720000 |
0.2331000 |
0.2684000 |
35.5 |
70.0 |
10 |
88.95 |
10.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
231486989 |
rs2474633 |
A |
C |
. |
PASS |
0.5212000 |
0.5259000 |
0.5308000 |
0.6630000 |
0.5716000 |
0.5621000 |
33.0 |
70.0 |
22 |
123.77 |
24.24 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
231487017 |
rs2474634 |
T |
C |
. |
PASS |
0.4070000 |
0.5216000 |
0.5308000 |
0.6630000 |
0.5716000 |
0.5314000 |
35.5 |
70.0 |
23 |
220.46 |
11.96 |
34.78 |
0 |
34.78 |
0/1 |
| chr1 |
231488524 |
rs2437150 |
C |
T |
. |
PASS |
0.4402000 |
0.5216000 |
0.5248000 |
0.6511000 |
0.5532000 |
0.5329000 |
36.27 |
70.0 |
53 |
1000.00 |
8.00 |
62.26 |
0 |
62.26 |
0/1 |
| chr1 |
231502245 |
rs1435167 |
T |
A |
. |
PASS |
0.3464000 |
0.4280000 |
0.4355000 |
0.5288000 |
0.4356000 |
0.4297000 |
37.0 |
70.0 |
35 |
651.67 |
3.31 |
54.29 |
0 |
54.29 |
0/1 |
| chr1 |
231502310 |
rs1435166 |
T |
C |
. |
PASS |
0.2057000 |
0.5086000 |
0.5278000 |
0.6511000 |
0.5603000 |
0.4712000 |
37.0 |
70.0 |
12 |
349.11 |
3.33 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
231535880 |
rs2491412 |
A |
T |
. |
PASS |
0.5197000 |
0.5259000 |
0.5218000 |
0.6620000 |
0.5675000 |
0.5589000 |
35.96 |
70.0 |
64 |
707.45 |
1.90 |
35.94 |
0 |
35.94 |
0/1 |
| chr1 |
231535883 |
rs2486728 |
T |
G |
. |
PASS |
0.2625000 |
0.5159000 |
0.5218000 |
0.6620000 |
0.5675000 |
0.4896000 |
36.45 |
70.0 |
63 |
680.70 |
4.76 |
34.92 |
0 |
34.92 |
0/1 |
| chr1 |
231697030 |
rs1982095 |
G |
A |
. |
PASS |
0.6861000 |
0.5576000 |
0.3512000 |
0.3390000 |
0.3221000 |
0.4601000 |
35.4 |
70.0 |
31 |
476.77 |
10.32 |
48.39 |
0 |
48.39 |
0/1 |
| chr1 |
231830295 |
rs3738401 |
G |
A |
. |
PASS |
0.1172000 |
0.3329000 |
0.2173000 |
0.3390000 |
0.2219000 |
0.2322000 |
36.23 |
70.0 |
72 |
1000.00 |
9.68 |
43.06 |
0 |
43.06 |
0/1 |
| chr1 |
231864002 |
rs2812385 |
G |
T |
. |
PASS |
0.4592000 |
0.5648000 |
0.5942000 |
0.6322000 |
0.6554000 |
0.5741000 |
37.0 |
70.0 |
31 |
329.54 |
12.32 |
35.48 |
0 |
35.48 |
0/1 |
| chr1 |
231936016 |
rs2759354 |
A |
G |
. |
PASS |
0.9697000 |
0.9914000 |
1.0000000 |
0.9940000 |
0.9939000 |
0.9884000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
231954101 |
rs6675281 |
C |
T |
. |
PASS |
0.1884000 |
0.0821000 |
0.0030000 |
0.1243000 |
0.0470000 |
0.0958000 |
36.29 |
70.0 |
40 |
545.22 |
0.59 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
232221328 |
rs9725874 |
T |
C |
. |
PASS |
0.4440000 |
0.6052000 |
0.5466000 |
0.5736000 |
0.5368000 |
0.5311000 |
37.0 |
70.0 |
126 |
1000.00 |
8.36 |
41.27 |
0 |
41.27 |
0/1 |
| chr1 |
232527958 |
rs2486022 |
C |
A |
. |
PASS |
0.5492000 |
0.5014000 |
0.6935000 |
0.4076000 |
0.4785000 |
0.5294000 |
37.0 |
70.0 |
41 |
884.23 |
4.68 |
60.98 |
0 |
60.98 |
0/1 |
| chr1 |
232534776 |
rs586719 |
C |
T |
. |
PASS |
0.3570000 |
0.2089000 |
0.0010000 |
0.2535000 |
0.1431000 |
0.2023000 |
35.8 |
70.0 |
12 |
337.10 |
3.33 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
232534957 |
rs12043251 |
T |
C |
. |
PASS |
0.2564000 |
0.4697000 |
0.7371000 |
0.2654000 |
0.3436000 |
0.4016000 |
36.23 |
70.0 |
66 |
1000.00 |
8.50 |
46.97 |
0 |
46.97 |
0/1 |
| chr1 |
232535030 |
rs629939 |
C |
T |
. |
PASS |
1.0000000 |
0.9957000 |
1.0000000 |
0.9930000 |
0.9980000 |
0.9976000 |
36.31 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232538234 |
rs17177525 |
T |
G |
. |
PASS |
0.0696000 |
0.1311000 |
0.0010000 |
0.1889000 |
0.1217000 |
0.0984000 |
37.0 |
70.0 |
44 |
708.12 |
5.19 |
47.73 |
0 |
47.73 |
0/1 |
| chr1 |
232551416 |
rs12569188 |
G |
A |
. |
PASS |
0.1589000 |
0.3905000 |
0.4306000 |
0.3827000 |
0.2843000 |
0.3151000 |
36.57 |
69.29 |
63 |
935.46 |
3.17 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
232561396 |
rs41271519 |
T |
C |
. |
PASS |
0.0008000 |
0.0072000 |
0.0000000 |
0.0080000 |
0.0000000 |
0.0027955 |
37.0 |
70.0 |
68 |
890.66 |
12.64 |
39.71 |
0 |
39.71 |
0/1 |
| chr1 |
232564297 |
rs3210731 |
T |
A |
. |
PASS |
0.0371000 |
0.1801000 |
0.0030000 |
0.1909000 |
0.1033000 |
0.0938000 |
35.86 |
70.0 |
48 |
672.07 |
0.60 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
232568293 |
rs1547741 |
A |
G |
. |
PASS |
0.9985000 |
0.9726000 |
1.0000000 |
0.9175000 |
0.9928000 |
0.9778000 |
35.0 |
70.0 |
12 |
441.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232574921 |
rs2275307 |
T |
C |
. |
PASS |
0.4100000 |
0.3473000 |
0.4643000 |
0.2008000 |
0.3180000 |
0.3522000 |
36.26 |
69.75 |
81 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232581247 |
rs1409369 |
C |
G |
. |
PASS |
0.3684000 |
0.4625000 |
0.5347000 |
0.2197000 |
0.3712000 |
0.3856000 |
36.1 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232581436 |
rs12757779 |
G |
A |
. |
PASS |
0.0363000 |
0.1657000 |
0.0010000 |
0.1889000 |
0.0951000 |
0.0893000 |
36.68 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232606993 |
rs67046968,rs60083072 |
GTGTC |
G |
. |
PASS |
0.2224000 |
0.3963000 |
0.1647000 |
0.2306000 |
0.3016000 |
0.2520000 |
36.08 |
70.0 |
13 |
485.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232607050 |
rs12116796 |
T |
A |
. |
PASS |
0.1793000 |
0.3919000 |
0.1647000 |
0.2296000 |
0.3016000 |
0.2398000 |
36.68 |
69.47 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232607094 |
rs12116822 |
T |
C |
. |
PASS |
0.2224000 |
0.3963000 |
0.1647000 |
0.2306000 |
0.3027000 |
0.2522000 |
36.45 |
69.7 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232629475 |
rs3737839 |
C |
T |
. |
PASS |
0.2254000 |
0.3963000 |
0.1637000 |
0.2316000 |
0.2975000 |
0.2520000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232650750 |
rs3795366 |
A |
G |
. |
PASS |
0.9917000 |
0.8429000 |
0.5040000 |
0.9463000 |
0.8446000 |
0.8351000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232650867 |
rs4649383 |
C |
T |
. |
PASS |
0.4569000 |
0.6369000 |
0.3333000 |
0.7952000 |
0.6135000 |
0.5555000 |
36.53 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
232941153 |
rs12409898 |
C |
T |
. |
PASS |
0.0840000 |
0.5879000 |
0.6607000 |
0.7097000 |
0.7587000 |
0.5274000 |
35.67 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
233086456 |
rs13381 |
T |
C |
. |
PASS |
0.3336000 |
0.1513000 |
0.1825000 |
0.1988000 |
0.2127000 |
0.2272000 |
37.0 |
70.0 |
67 |
1000.00 |
2.36 |
56.72 |
0 |
56.72 |
0/1 |
| chr1 |
233119951 |
rs2885 |
C |
T |
. |
PASS |
0.2307000 |
0.1254000 |
0.1647000 |
0.1958000 |
0.1186000 |
0.1739000 |
35.8 |
70.0 |
12 |
337.10 |
3.33 |
83.33 |
0 |
83.33 |
0/1 |
| chr1 |
233121791 |
rs12038915 |
G |
A |
. |
PASS |
0.2322000 |
0.1239000 |
0.1637000 |
0.2008000 |
0.1227000 |
0.1757000 |
36.7 |
70.0 |
70 |
1000.00 |
4.84 |
55.71 |
0 |
57.14 |
0/1 |
| chr1 |
233122127 |
rs41309639 |
C |
T |
. |
PASS |
0.2163000 |
0.1254000 |
0.1667000 |
0.2008000 |
0.1227000 |
0.1723000 |
36.56 |
70.0 |
60 |
902.72 |
17.04 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
233134086 |
rs56231757 |
C |
T |
. |
PASS |
0.2542000 |
0.1657000 |
0.1200000 |
0.2147000 |
0.1339000 |
0.1835000 |
36.16 |
70.0 |
81 |
1000.00 |
2.53 |
53.09 |
0 |
53.09 |
0/1 |
| chr1 |
233137225 |
rs140788891,rs4027365 |
CATAA |
C |
. |
PASS |
0.9531000 |
0.9251000 |
0.9117000 |
0.9463000 |
0.9151000 |
0.9321000 |
36.34 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
233152910 |
rs59041465,rs11271054 |
A |
AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT |
. |
PASS |
0.6271000 |
0.4366000 |
0.5417000 |
0.3300000 |
0.3047000 |
0.4609000 |
36.0 |
70.0 |
30 |
226.58 |
6.67 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
233222823 |
rs10752798 |
C |
A |
. |
PASS |
0.6891000 |
0.4769000 |
0.3978000 |
0.6342000 |
0.5215000 |
0.5573000 |
36.44 |
70.0 |
64 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
233225848 |
rs12059884 |
T |
C |
. |
PASS |
0.3548000 |
0.1066000 |
0.0000000 |
0.1014000 |
0.0245000 |
0.1336000 |
37.0 |
70.0 |
65 |
899.68 |
6.50 |
41.54 |
0 |
41.54 |
0/1 |
| chr1 |
233296891 |
rs2296515 |
T |
C |
. |
PASS |
0.5666000 |
0.5058000 |
0.4157000 |
0.6332000 |
0.6902000 |
0.5653000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
233296908 |
rs2296516 |
T |
G |
. |
PASS |
0.5666000 |
0.5058000 |
0.4117000 |
0.6332000 |
0.6902000 |
0.5645000 |
37.0 |
70.0 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
233489499 |
rs7539016 |
A |
G |
. |
PASS |
0.5159000 |
0.6153000 |
0.5595000 |
0.4095000 |
0.4816000 |
0.5104000 |
37.0 |
70.0 |
23 |
483.08 |
7.45 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
233489529 |
rs7549137 |
G |
A |
. |
PASS |
0.5159000 |
0.6153000 |
0.5595000 |
0.4095000 |
0.4816000 |
0.5104000 |
36.04 |
70.0 |
56 |
819.22 |
8.57 |
44.64 |
0 |
44.64 |
0/1 |
| chr1 |
233489707 |
rs7551511 |
G |
T |
. |
PASS |
0.5159000 |
0.6153000 |
0.5595000 |
0.4095000 |
0.4816000 |
0.5104000 |
36.59 |
70.0 |
82 |
838.37 |
15.90 |
32.93 |
0 |
35.37 |
0/1 |
| chr1 |
233490536 |
rs137943316 |
A |
AATGTCTTGGGGATAATCTG |
. |
PASS |
0.4410000 |
0.5519000 |
0.4990000 |
0.3221000 |
0.4202000 |
0.4401000 |
35.8 |
70.0 |
18 |
180.15 |
7.94 |
38.89 |
0 |
38.89 |
0/1 |
| chr1 |
233490543 |
rs2049182 |
G |
A |
. |
PASS |
0.5182000 |
0.6153000 |
0.5595000 |
0.4095000 |
0.4816000 |
0.5110000 |
37.0 |
70.0 |
20 |
199.72 |
5.71 |
35.00 |
0 |
35.00 |
0/1 |
| chr1 |
233498026 |
rs56052041 |
C |
T |
. |
PASS |
0.0023000 |
0.0403000 |
0.0000000 |
0.0477000 |
0.0020000 |
0.0161740 |
36.08 |
70.0 |
53 |
870.02 |
2.47 |
49.06 |
0 |
49.06 |
0/1 |
| chr1 |
233749855 |
rs2795294 |
A |
G |
. |
PASS |
0.6914000 |
0.6686000 |
0.7440000 |
0.6740000 |
0.5900000 |
0.6755000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
233750336 |
. |
C |
A |
. |
PASS |
0.0000000 |
0.0029000 |
0.0000000 |
0.0099000 |
0.0041000 |
0.0031949 |
37.0 |
68.33 |
37 |
353.26 |
9.46 |
32.43 |
0 |
32.43 |
0/1 |
| chr1 |
233881048 |
rs619925 |
C |
T |
. |
PASS |
0.9887000 |
0.9813000 |
0.9861000 |
0.9553000 |
0.9785000 |
0.9784000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
233881123 |
rs679909 |
G |
A |
. |
PASS |
0.5772000 |
0.5000000 |
0.4544000 |
0.5129000 |
0.4387000 |
0.5018000 |
37.0 |
70.0 |
34 |
658.83 |
5.26 |
55.88 |
0 |
55.88 |
0/1 |
| chr1 |
234040742 |
rs12136133 |
A |
C |
. |
PASS |
0.4304000 |
0.3098000 |
0.4464000 |
0.4831000 |
0.5429000 |
0.4495000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
234040898 |
rs78485515 |
G |
A |
. |
PASS |
0.0189000 |
0.0447000 |
0.1508000 |
0.0398000 |
0.1043000 |
0.0699000 |
35.67 |
70.0 |
57 |
887.73 |
1.56 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
234041317 |
rs79244900 |
C |
T |
. |
PASS |
0.0015000 |
0.0346000 |
0.1508000 |
0.0258000 |
0.0930000 |
0.0589000 |
36.73 |
70.0 |
89 |
1000.00 |
1.35 |
50.56 |
0 |
50.56 |
0/1 |
| chr1 |
234041422 |
rs57010808 |
G |
C |
. |
PASS |
0.4387000 |
0.3127000 |
0.4474000 |
0.4742000 |
0.5440000 |
0.4507000 |
36.46 |
69.82 |
112 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
234454405 |
rs657010 |
A |
C |
. |
PASS |
0.9977000 |
0.9928000 |
1.0000000 |
0.9841000 |
0.9939000 |
0.9940000 |
37.0 |
70.0 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
234509259 |
rs10910420 |
G |
C |
. |
PASS |
0.8865000 |
0.6614000 |
0.4871000 |
0.4950000 |
0.4264000 |
0.6064000 |
35.67 |
70.0 |
94 |
1000.00 |
4.61 |
38.30 |
0 |
38.30 |
0/1 |
| chr1 |
234519385 |
rs10797539 |
T |
C |
. |
PASS |
0.6694000 |
0.5418000 |
0.4851000 |
0.3648000 |
0.3108000 |
0.4834000 |
31.0 |
70.0 |
13 |
143.00 |
15.38 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
234519452 |
rs58896934 |
C |
CT |
. |
PASS |
0.8464000 |
0.6499000 |
0.4821000 |
0.4920000 |
0.4192000 |
0.5913000 |
34.33 |
70.0 |
35 |
204.53 |
2.86 |
22.86 |
0 |
25.71 |
0/1 |
| chr1 |
234527575 |
rs3862040 |
C |
T |
. |
PASS |
0.6233000 |
0.5692000 |
0.4940000 |
0.4334000 |
0.3998000 |
0.5080000 |
35.5 |
70.0 |
12 |
253.56 |
8.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
234528373 |
rs7523423 |
C |
T |
. |
PASS |
0.6233000 |
0.5692000 |
0.4940000 |
0.4334000 |
0.3998000 |
0.5080000 |
35.91 |
70.0 |
16 |
366.83 |
3.41 |
68.75 |
0 |
68.75 |
0/1 |
| chr1 |
234529552 |
rs2175594 |
C |
T |
. |
PASS |
0.6225000 |
0.5692000 |
0.4950000 |
0.4384000 |
0.4049000 |
0.5100000 |
36.29 |
70.0 |
52 |
509.10 |
14.25 |
32.69 |
0 |
32.69 |
0/1 |
| chr1 |
234529570 |
rs2175593 |
G |
A |
. |
PASS |
0.6089000 |
0.5677000 |
0.4940000 |
0.4334000 |
0.3998000 |
0.5040000 |
37.0 |
70.0 |
41 |
345.37 |
11.38 |
29.27 |
0 |
29.27 |
0/1 |
| chr1 |
234530325 |
rs10910426 |
A |
G |
. |
PASS |
0.6233000 |
0.5720000 |
0.4940000 |
0.4344000 |
0.3998000 |
0.5086000 |
36.6 |
70.0 |
73 |
988.90 |
1.00 |
41.10 |
0 |
41.10 |
0/1 |
| chr1 |
234530370 |
rs10797540 |
G |
A |
. |
PASS |
0.6233000 |
0.5720000 |
0.4940000 |
0.4344000 |
0.3998000 |
0.5086000 |
35.89 |
70.0 |
111 |
1000.00 |
3.10 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
234541622 |
rs2271444 |
G |
T |
. |
PASS |
0.1150000 |
0.2752000 |
0.3095000 |
0.2256000 |
0.2822000 |
0.2312000 |
37.0 |
70.0 |
37 |
603.88 |
18.92 |
48.65 |
0 |
48.65 |
0/1 |
| chr1 |
234546245 |
rs1141264 |
C |
T |
. |
PASS |
0.2110000 |
0.3847000 |
0.3958000 |
0.3907000 |
0.3579000 |
0.3371000 |
36.73 |
70.0 |
76 |
1000.00 |
1.44 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
234582651 |
rs4920246 |
T |
C |
. |
PASS |
0.3101000 |
0.3804000 |
0.3036000 |
0.2932000 |
0.2485000 |
0.3031000 |
36.27 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
234584231 |
rs2102596 |
C |
T |
. |
PASS |
0.2564000 |
0.3732000 |
0.3036000 |
0.2893000 |
0.2485000 |
0.2871000 |
36.39 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
234593403 |
rs6693478 |
T |
C |
. |
PASS |
0.0825000 |
0.1182000 |
0.0010000 |
0.1958000 |
0.0716000 |
0.0917000 |
37.0 |
70.0 |
39 |
894.40 |
7.18 |
64.10 |
0 |
64.10 |
0/1 |
| chr1 |
234594947 |
rs12402937 |
T |
C |
. |
PASS |
0.1112000 |
0.2493000 |
0.3075000 |
0.0964000 |
0.1759000 |
0.1795000 |
37.0 |
70.0 |
32 |
288.92 |
13.75 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
234744250 |
rs8722 |
G |
A |
. |
PASS |
0.0129000 |
0.1398000 |
0.2034000 |
0.2455000 |
0.1166000 |
0.1358000 |
36.25 |
69.38 |
70 |
1000.00 |
11.96 |
45.71 |
0 |
45.71 |
0/1 |
| chr1 |
234744413 |
rs4636 |
C |
A |
. |
PASS |
0.1619000 |
0.2896000 |
0.2083000 |
0.4185000 |
0.2658000 |
0.2608000 |
36.52 |
70.0 |
77 |
1000.00 |
4.31 |
64.94 |
0 |
64.94 |
0/1 |
| chr1 |
234744480 |
rs11502 |
G |
A |
. |
PASS |
0.0068000 |
0.0778000 |
0.0000000 |
0.0964000 |
0.0225000 |
0.0363000 |
35.62 |
70.0 |
51 |
864.03 |
5.73 |
50.98 |
0 |
50.98 |
0/1 |
| chr1 |
234745009 |
rs7545855 |
A |
G |
. |
PASS |
0.8729000 |
0.5490000 |
0.2679000 |
0.7734000 |
0.4509000 |
0.6038000 |
36.54 |
70.0 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
234953834 |
rs200007946 |
A |
C |
. |
PASS |
0.4894000 |
0.7781000 |
0.8214000 |
0.8022000 |
0.6115000 |
0.6829000 |
37.0 |
26.8 |
22 |
106.02 |
38.18 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
235082292 |
rs59206581 |
G |
T |
. |
PASS |
0.3313000 |
0.4006000 |
0.3254000 |
0.3926000 |
0.5951000 |
0.4036000 |
37.0 |
70.0 |
54 |
1000.00 |
7.74 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
235324047 |
rs66533903 |
A |
C |
. |
PASS |
0.4009000 |
0.1239000 |
0.0208000 |
0.1252000 |
0.0767000 |
0.1673000 |
34.6 |
66.0 |
10 |
130.12 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
235324298 |
rs2295815 |
T |
C |
. |
PASS |
0.4009000 |
0.1210000 |
0.0208000 |
0.1233000 |
0.0828000 |
0.1677000 |
36.41 |
69.51 |
109 |
1000.00 |
2.15 |
37.61 |
0 |
37.61 |
0/1 |
| chr1 |
235324545 |
rs66929873 |
T |
A |
. |
PASS |
0.2080000 |
0.0908000 |
0.0208000 |
0.1203000 |
0.0828000 |
0.1120000 |
36.56 |
70.0 |
65 |
883.52 |
0.23 |
41.54 |
0 |
41.54 |
0/1 |
| chr1 |
235357303 |
rs34768226 |
A |
ATG |
. |
PASS |
0.4244000 |
0.5058000 |
0.2510000 |
0.4742000 |
0.5982000 |
0.4447000 |
36.22 |
70.0 |
26 |
971.89 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235357314 |
rs35180803 |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
32 |
497.95 |
6.25 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
235357543 |
rs10802438 |
A |
G |
. |
PASS |
0.0469000 |
0.4063000 |
0.2282000 |
0.3559000 |
0.5337000 |
0.2903000 |
35.59 |
70.0 |
35 |
548.26 |
3.70 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
235383188 |
rs4659654 |
A |
G |
. |
PASS |
0.4433000 |
0.5115000 |
0.2510000 |
0.4791000 |
0.5982000 |
0.4515000 |
36.25 |
70.0 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235383351 |
rs3795250 |
T |
C |
. |
PASS |
0.0741000 |
0.4107000 |
0.2282000 |
0.3648000 |
0.5337000 |
0.2999000 |
37.0 |
70.0 |
15 |
173.00 |
0.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
235392546 |
rs12731746 |
T |
C |
. |
PASS |
0.4342000 |
0.5086000 |
0.2510000 |
0.4791000 |
0.5982000 |
0.4487000 |
35.7 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235394510 |
rs11321831 |
TA |
T |
. |
PASS |
0.2247000 |
0.0821000 |
0.0228000 |
0.1143000 |
0.0654000 |
0.1110000 |
36.45 |
70.0 |
25 |
336.19 |
0.73 |
44.00 |
0 |
44.00 |
0/1 |
| chr1 |
235394541 |
rs7518225 |
A |
C |
. |
PASS |
0.4342000 |
0.5086000 |
0.2480000 |
0.4791000 |
0.5982000 |
0.4481000 |
37.0 |
70.0 |
15 |
586.92 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235403595 |
rs11581220 |
G |
T |
. |
PASS |
0.2216000 |
0.0807000 |
0.0228000 |
0.1143000 |
0.0644000 |
0.1098000 |
35.91 |
70.0 |
20 |
350.64 |
15.45 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
235490391 |
rs3840452 |
CA |
C |
. |
PASS |
0.4281000 |
0.4006000 |
0.2520000 |
0.4672000 |
0.5879000 |
0.4279000 |
36.08 |
70.0 |
13 |
485.97 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235505313 |
rs3841735 |
A |
AT |
. |
PASS |
0.2065000 |
0.3184000 |
0.2272000 |
0.3549000 |
0.5266000 |
0.3185000 |
36.29 |
70.0 |
47 |
508.56 |
17.52 |
36.17 |
0 |
36.17 |
0/1 |
| chr1 |
235543476 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.6 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
235543476 |
. |
TTGTGTGTGTGTGTGTGTGTGTG |
TTGTGTGTGTGTGTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
41 |
847.80 |
4.50 |
31.71 |
1 |
100.00 |
0/1 |
| chr1 |
235543476 |
rs72371333,rs10524346 |
TTGTGTGTGTGTGTGTGTGTGTG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.85 |
70.0 |
41 |
847.80 |
1.08 |
65.85 |
1 |
100.00 |
0/1 |
| chr1 |
235543477 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.6 |
70.0 |
41 |
1000.00 |
2.56 |
97.56 |
1 |
97.56 |
1/1 |
| chr1 |
235543478 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.6 |
70.0 |
41 |
1000.00 |
2.56 |
97.56 |
1 |
97.56 |
1/1 |
| chr1 |
235543479 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.6 |
70.0 |
41 |
1000.00 |
2.56 |
97.56 |
1 |
97.56 |
1/1 |
| chr1 |
235543480 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.6 |
70.0 |
41 |
1000.00 |
2.56 |
97.56 |
1 |
97.56 |
1/1 |
| chr1 |
235543481 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.32 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
1 |
100.00 |
1/1 |
| chr1 |
235543482 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.28 |
70.0 |
41 |
1000.00 |
2.44 |
97.56 |
1 |
97.56 |
1/1 |
| chr1 |
235543483 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.28 |
70.0 |
41 |
1000.00 |
2.44 |
97.56 |
1 |
97.56 |
1/1 |
| chr1 |
235590559 |
rs12757197 |
G |
A |
. |
PASS |
0.2511000 |
0.0807000 |
0.0208000 |
0.0885000 |
0.0890000 |
0.1168000 |
36.61 |
70.0 |
70 |
1000.00 |
1.11 |
44.29 |
0 |
44.29 |
0/1 |
| chr1 |
235594182 |
rs2291687 |
A |
G |
. |
PASS |
0.9644000 |
0.7161000 |
0.6726000 |
0.6372000 |
0.5971000 |
0.7338000 |
37.0 |
70.0 |
18 |
247.51 |
30.56 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
235612219 |
rs7537 |
T |
A |
. |
PASS |
0.2625000 |
0.0692000 |
0.0198000 |
0.0815000 |
0.0879000 |
0.1164000 |
34.6 |
70.0 |
15 |
115.07 |
13.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
235620964 |
rs704709 |
G |
A |
. |
PASS |
0.6180000 |
0.4092000 |
0.3442000 |
0.4781000 |
0.4980000 |
0.4824000 |
35.91 |
70.0 |
22 |
859.44 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235621026 |
rs704710 |
A |
G |
. |
PASS |
0.6657000 |
0.4164000 |
0.3433000 |
0.4781000 |
0.4980000 |
0.4958000 |
36.79 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235628908 |
rs1305556 |
G |
A |
. |
PASS |
0.5726000 |
0.7061000 |
0.8413000 |
0.5129000 |
0.7791000 |
0.6735000 |
36.14 |
70.0 |
22 |
474.09 |
5.19 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
235647631 |
rs291387 |
G |
T |
. |
PASS |
0.5893000 |
0.7104000 |
0.8403000 |
0.5129000 |
0.7791000 |
0.6783000 |
36.69 |
70.0 |
56 |
1000.00 |
4.58 |
69.64 |
0 |
69.64 |
0/1 |
| chr1 |
235652513 |
rs291396 |
T |
C |
. |
PASS |
0.5893000 |
0.7104000 |
0.8413000 |
0.5139000 |
0.7791000 |
0.6787000 |
37.0 |
70.0 |
30 |
670.87 |
1.40 |
63.33 |
0 |
63.33 |
0/1 |
| chr1 |
235715523 |
rs14326 |
A |
G |
. |
PASS |
0.5893000 |
0.6599000 |
0.8383000 |
0.4950000 |
0.5941000 |
0.6312000 |
36.67 |
69.81 |
108 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235715556 |
rs423026 |
C |
G |
. |
PASS |
0.5620000 |
0.6556000 |
0.8383000 |
0.4950000 |
0.5941000 |
0.6234000 |
36.57 |
69.76 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235715601 |
rs400948 |
A |
G |
. |
PASS |
0.5635000 |
0.6556000 |
0.8383000 |
0.4950000 |
0.5941000 |
0.6238000 |
35.96 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235715617 |
rs452950 |
A |
C |
. |
PASS |
0.5635000 |
0.6556000 |
0.8383000 |
0.4950000 |
0.5941000 |
0.6238000 |
36.66 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235715661 |
rs387492 |
A |
G |
. |
PASS |
0.9818000 |
0.8040000 |
0.8472000 |
0.6839000 |
0.6575000 |
0.8069000 |
36.43 |
70.0 |
21 |
829.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
235747005 |
rs2774335 |
C |
T |
. |
PASS |
0.3903000 |
0.5231000 |
0.7996000 |
0.3757000 |
0.4479000 |
0.4994000 |
36.1 |
69.5 |
56 |
1000.00 |
4.29 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
235747154 |
rs2774336 |
A |
G |
. |
PASS |
0.3722000 |
0.5231000 |
0.7996000 |
0.3767000 |
0.4479000 |
0.4948000 |
37.0 |
70.0 |
35 |
488.74 |
5.71 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
235840495 |
rs72761794 |
G |
T |
. |
PASS |
0.0000000 |
0.0014000 |
0.0000000 |
0.0070000 |
0.0102000 |
0.0035942 |
37.0 |
70.0 |
30 |
332.55 |
7.27 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
235860340 |
rs7541057 |
C |
T |
. |
PASS |
0.7632000 |
0.3617000 |
0.0437000 |
0.5497000 |
0.1493000 |
0.4000000 |
34.0 |
70.0 |
30 |
187.37 |
1.67 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
235872665 |
rs2275856 |
T |
C |
. |
PASS |
0.8812000 |
0.3343000 |
0.0734000 |
0.4264000 |
0.1759000 |
0.4137000 |
37.0 |
70.0 |
21 |
363.79 |
6.93 |
52.38 |
0 |
52.38 |
0/1 |
| chr1 |
235887276 |
rs6667717 |
G |
T |
. |
PASS |
0.8812000 |
0.3329000 |
0.0655000 |
0.4254000 |
0.1759000 |
0.4117000 |
35.91 |
70.0 |
35 |
305.49 |
3.12 |
31.43 |
0 |
31.43 |
0/1 |
| chr1 |
235896726 |
rs6429275 |
C |
T |
. |
PASS |
0.8812000 |
0.3372000 |
0.0655000 |
0.4264000 |
0.1759000 |
0.4125000 |
37.0 |
70.0 |
17 |
208.75 |
11.76 |
41.18 |
0 |
41.18 |
0/1 |
| chr1 |
235901433 |
rs2145402 |
C |
A |
. |
PASS |
0.0310000 |
0.2651000 |
0.0724000 |
0.3082000 |
0.2444000 |
0.1691000 |
34.88 |
70.0 |
34 |
535.12 |
17.65 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
235922228 |
rs3738519 |
T |
C |
. |
PASS |
0.4198000 |
0.2003000 |
0.0248000 |
0.2813000 |
0.1534000 |
0.2300000 |
37.0 |
70.0 |
18 |
372.82 |
13.13 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
235940450 |
rs2273584 |
C |
T |
. |
PASS |
0.4871000 |
0.2997000 |
0.0655000 |
0.4254000 |
0.1646000 |
0.3009000 |
36.43 |
70.0 |
69 |
1000.00 |
2.48 |
60.87 |
0 |
60.87 |
0/1 |
| chr1 |
235945294 |
rs6696123 |
T |
C |
. |
PASS |
0.4879000 |
0.2997000 |
0.0655000 |
0.4254000 |
0.1769000 |
0.3035000 |
37.0 |
70.0 |
75 |
1000.00 |
9.03 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
235972435 |
rs3820553 |
T |
C |
. |
PASS |
0.4879000 |
0.2983000 |
0.0665000 |
0.4235000 |
0.1748000 |
0.3027000 |
36.66 |
70.0 |
87 |
1000.00 |
0.53 |
40.23 |
0 |
40.23 |
0/1 |
| chr1 |
235972867 |
rs1063128 |
T |
C |
. |
PASS |
0.4887000 |
0.2997000 |
0.0655000 |
0.4254000 |
0.1748000 |
0.3033000 |
36.73 |
70.0 |
85 |
1000.00 |
10.43 |
51.76 |
0 |
51.76 |
0/1 |
| chr1 |
236141174 |
rs3213190 |
T |
C |
. |
PASS |
0.3850000 |
0.2608000 |
0.6131000 |
0.1451000 |
0.2761000 |
0.3442000 |
36.31 |
70.0 |
101 |
1000.00 |
0.65 |
51.49 |
0 |
51.49 |
0/1 |
| chr1 |
236142253 |
rs12032474 |
T |
G |
. |
PASS |
0.3843000 |
0.2594000 |
0.6141000 |
0.1441000 |
0.2761000 |
0.3438000 |
36.59 |
69.31 |
68 |
958.03 |
1.62 |
42.65 |
0 |
42.65 |
0/1 |
| chr1 |
236144951 |
rs3738525 |
A |
G |
. |
PASS |
0.3555000 |
0.2579000 |
0.6151000 |
0.1402000 |
0.2710000 |
0.3345000 |
36.68 |
70.0 |
79 |
1000.00 |
1.27 |
48.10 |
0 |
48.10 |
0/1 |
| chr1 |
236145145 |
rs715956 |
T |
C |
. |
PASS |
0.3570000 |
0.2579000 |
0.6151000 |
0.1402000 |
0.2710000 |
0.3349000 |
37.0 |
70.0 |
21 |
154.95 |
0.00 |
28.57 |
0 |
28.57 |
0/1 |
| chr1 |
236154057 |
rs139359390,rs72308329,rs3831990 |
AGGACTACAT |
A |
. |
PASS |
0.2784000 |
0.2262000 |
0.6240000 |
0.1083000 |
0.2607000 |
0.3031000 |
35.38 |
70.0 |
12 |
239.99 |
8.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
236154186 |
rs72765416 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
75 |
1000.00 |
10.00 |
48.00 |
0 |
48.00 |
0/1 |
| chr1 |
236154365 |
rs4660137 |
G |
T |
. |
PASS |
0.3820000 |
0.2608000 |
0.6429000 |
0.1412000 |
0.2720000 |
0.3478000 |
37.0 |
70.0 |
44 |
666.35 |
8.18 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
236175153 |
rs2031486 |
T |
C |
. |
PASS |
0.0560000 |
0.1455000 |
0.0873000 |
0.3509000 |
0.1973000 |
0.1615000 |
37.0 |
70.0 |
14 |
176.01 |
42.86 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
236175339 |
rs2031487 |
T |
C |
. |
PASS |
0.7950000 |
0.6427000 |
0.7698000 |
0.5000000 |
0.7290000 |
0.6967000 |
36.23 |
70.0 |
53 |
1000.00 |
7.30 |
58.49 |
0 |
58.49 |
0/1 |
| chr1 |
236193145 |
rs2273586 |
G |
C |
. |
PASS |
0.5825000 |
0.2781000 |
0.4980000 |
0.3320000 |
0.4264000 |
0.4425000 |
37.0 |
70.0 |
15 |
252.39 |
3.33 |
53.33 |
0 |
53.33 |
0/1 |
| chr1 |
236201609 |
rs4659620 |
T |
G |
. |
PASS |
0.0492000 |
0.1182000 |
0.0972000 |
0.2724000 |
0.1595000 |
0.1348000 |
37.0 |
70.0 |
29 |
502.65 |
8.74 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
236203443 |
rs3768086 |
G |
A |
. |
PASS |
0.5280000 |
0.5303000 |
0.6994000 |
0.4155000 |
0.5685000 |
0.5481000 |
36.37 |
70.0 |
92 |
1000.00 |
2.17 |
41.30 |
0 |
41.30 |
0/1 |
| chr1 |
236203503 |
rs3768087 |
G |
C |
. |
PASS |
0.0651000 |
0.3919000 |
0.3581000 |
0.2435000 |
0.2781000 |
0.2468000 |
35.59 |
70.0 |
80 |
1000.00 |
6.76 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
236205121 |
rs4297282 |
T |
C |
. |
PASS |
0.6452000 |
0.5519000 |
0.7034000 |
0.4175000 |
0.5767000 |
0.5849000 |
37.0 |
70.0 |
12 |
182.03 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
236208687 |
rs71559910 |
AAT |
AGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
70.0 |
11 |
173.03 |
0.00 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
236208773 |
rs10733133 |
C |
T |
. |
PASS |
0.6369000 |
0.5562000 |
0.7063000 |
0.4334000 |
0.5777000 |
0.5873000 |
36.14 |
70.0 |
38 |
425.93 |
1.50 |
36.84 |
0 |
36.84 |
0/1 |
| chr1 |
236209024 |
rs3768088 |
C |
G |
. |
PASS |
0.6369000 |
0.5562000 |
0.7063000 |
0.4334000 |
0.5777000 |
0.5873000 |
37.0 |
70.0 |
28 |
422.11 |
1.65 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
236273694 |
rs4659623 |
G |
A |
. |
PASS |
0.0620000 |
0.3012000 |
0.3522000 |
0.1958000 |
0.2260000 |
0.2125000 |
37.0 |
70.0 |
14 |
301.32 |
23.81 |
64.29 |
0 |
64.29 |
0/1 |
| chr1 |
236274147 |
rs7516388 |
G |
A |
. |
PASS |
0.4047000 |
0.4914000 |
0.4395000 |
0.3936000 |
0.3579000 |
0.4123000 |
36.1 |
70.0 |
82 |
1000.00 |
1.95 |
48.78 |
0 |
48.78 |
0/1 |
| chr1 |
236274805 |
rs7519217 |
G |
A |
. |
PASS |
0.1868000 |
0.3112000 |
0.3552000 |
0.1968000 |
0.2270000 |
0.2478000 |
37.0 |
70.0 |
11 |
268.58 |
2.27 |
72.73 |
0 |
72.73 |
0/1 |
| chr1 |
236275077 |
rs7542837 |
C |
T |
. |
PASS |
0.7617000 |
0.5375000 |
0.4663000 |
0.4095000 |
0.3640000 |
0.5228000 |
37.0 |
70.0 |
19 |
244.51 |
5.26 |
42.11 |
0 |
42.11 |
0/1 |
| chr1 |
236275237 |
. |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
38 |
737.52 |
5.26 |
57.89 |
1 |
57.89 |
0/1 |
| chr1 |
236275237 |
. |
CAACATTGAAAA |
CGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
33 |
737.52 |
9.09 |
66.67 |
1 |
66.67 |
0/1 |
| chr1 |
236275238 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
37 |
740.53 |
8.11 |
59.46 |
1 |
59.46 |
0/1 |
| chr1 |
236275239 |
. |
AC |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
36 |
743.55 |
0.00 |
61.11 |
1 |
61.11 |
0/1 |
| chr1 |
236275240 |
. |
CA |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
36 |
743.55 |
11.11 |
61.11 |
1 |
61.11 |
0/1 |
| chr1 |
236275241 |
. |
AT |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
36 |
743.54 |
5.56 |
61.11 |
1 |
61.11 |
0/1 |
| chr1 |
236275242 |
. |
TT |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
38 |
737.52 |
5.26 |
57.89 |
1 |
57.89 |
0/1 |
| chr1 |
236275243 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
38 |
737.52 |
5.26 |
57.89 |
1 |
57.89 |
0/1 |
| chr1 |
236275244 |
. |
GA |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
37 |
740.53 |
8.11 |
59.46 |
1 |
59.46 |
0/1 |
| chr1 |
236275245 |
. |
AA |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
69.91 |
35 |
746.56 |
8.57 |
62.86 |
1 |
62.86 |
0/1 |
| chr1 |
236275247 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.91 |
37 |
775.11 |
8.11 |
59.46 |
1 |
59.46 |
0/1 |
| chr1 |
236275248 |
rs374931719 |
A |
T |
. |
PASS |
0.0008000 |
0.0029000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0007987 |
37.0 |
69.91 |
37 |
770.96 |
8.11 |
59.46 |
1 |
59.46 |
0/1 |
| chr1 |
236275380 |
rs10924217 |
A |
G |
. |
PASS |
0.7534000 |
0.5346000 |
0.4683000 |
0.4095000 |
0.3630000 |
0.5204000 |
37.0 |
70.0 |
15 |
131.23 |
13.33 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
236305885 |
rs7522547 |
G |
A |
. |
PASS |
0.0681000 |
0.1398000 |
0.1885000 |
0.2127000 |
0.3374000 |
0.1839000 |
36.08 |
70.0 |
22 |
432.31 |
10.49 |
59.09 |
0 |
59.09 |
0/1 |
| chr1 |
236347224 |
rs67652024 |
C |
T |
. |
PASS |
0.3775000 |
0.0403000 |
0.0109000 |
0.0040000 |
0.0808000 |
0.1240000 |
35.67 |
70.0 |
40 |
574.98 |
5.00 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
236368391 |
rs3215798 |
C |
CT |
. |
PASS |
0.3328000 |
0.3458000 |
0.6151000 |
0.2594000 |
0.4029000 |
0.3904000 |
37.0 |
70.0 |
46 |
440.03 |
15.07 |
32.61 |
0 |
32.61 |
0/1 |
| chr1 |
236381825 |
rs1055851 |
G |
C |
. |
PASS |
0.4803000 |
0.5821000 |
0.8839000 |
0.4006000 |
0.5297000 |
0.5693000 |
37.0 |
70.0 |
44 |
499.27 |
13.64 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
236381897 |
rs1615601 |
T |
A |
. |
PASS |
0.4803000 |
0.5821000 |
0.8839000 |
0.4006000 |
0.5297000 |
0.5693000 |
37.0 |
70.0 |
27 |
174.51 |
5.29 |
25.93 |
0 |
25.93 |
0/1 |
| chr1 |
236384278 |
rs1405624 |
G |
C |
. |
PASS |
0.4803000 |
0.5821000 |
0.8849000 |
0.4006000 |
0.5297000 |
0.5695000 |
37.0 |
70.0 |
20 |
279.11 |
18.89 |
45.00 |
0 |
45.00 |
0/1 |
| chr1 |
236385165 |
rs2463189 |
G |
C |
. |
PASS |
0.4803000 |
0.5821000 |
0.8849000 |
0.4006000 |
0.5286000 |
0.5693000 |
37.0 |
67.14 |
22 |
189.55 |
2.60 |
31.82 |
0 |
31.82 |
0/1 |
| chr1 |
236385360 |
rs2477587 |
C |
T |
. |
PASS |
0.4803000 |
0.5821000 |
0.8849000 |
0.4006000 |
0.5297000 |
0.5695000 |
35.0 |
70.0 |
33 |
584.04 |
16.16 |
54.55 |
0 |
54.55 |
0/1 |
| chr1 |
236385379 |
rs2463188 |
A |
G |
. |
PASS |
0.4803000 |
0.5821000 |
0.8849000 |
0.4006000 |
0.5297000 |
0.5695000 |
36.2 |
70.0 |
24 |
509.84 |
5.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
236399442 |
rs1254194 |
G |
T |
. |
PASS |
0.1120000 |
0.3631000 |
0.1329000 |
0.6014000 |
0.5194000 |
0.3289000 |
35.8 |
70.0 |
16 |
320.91 |
5.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
236413147 |
rs1726639 |
T |
C |
. |
PASS |
0.1929000 |
0.3112000 |
0.3968000 |
0.2475000 |
0.1902000 |
0.2608000 |
35.91 |
70.0 |
33 |
315.67 |
36.36 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
236413230 |
rs2477599 |
T |
A |
. |
PASS |
0.1354000 |
0.3646000 |
0.1329000 |
0.6014000 |
0.5204000 |
0.3355000 |
35.67 |
70.0 |
52 |
898.63 |
0.43 |
51.92 |
0 |
51.92 |
0/1 |
| chr1 |
236413282 |
rs2056713 |
G |
A |
. |
PASS |
0.1929000 |
0.3112000 |
0.3968000 |
0.2475000 |
0.1902000 |
0.2608000 |
37.0 |
70.0 |
35 |
572.27 |
4.03 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
236415347 |
rs1749589 |
T |
C |
. |
PASS |
0.1929000 |
0.3112000 |
0.3968000 |
0.2475000 |
0.1902000 |
0.2608000 |
37.0 |
70.0 |
83 |
1000.00 |
6.02 |
40.96 |
0 |
40.96 |
0/1 |
| chr1 |
236415444 |
rs1618510 |
G |
A |
. |
PASS |
0.1619000 |
0.3098000 |
0.3968000 |
0.2475000 |
0.1902000 |
0.2524000 |
37.0 |
70.0 |
22 |
235.48 |
4.55 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
236433135 |
rs3834089 |
AT |
A |
. |
PASS |
0.7163000 |
0.7795000 |
0.8829000 |
0.8897000 |
0.8006000 |
0.8099000 |
35.09 |
70.0 |
23 |
871.63 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236444879 |
rs11281666,rs56307934 |
G |
GGCCCGGCCCT |
. |
PASS |
0.5265000 |
0.6009000 |
0.8591000 |
0.6630000 |
0.5583000 |
0.6374000 |
36.46 |
70.0 |
13 |
484.94 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236444973 |
rs1269025 |
C |
T |
. |
PASS |
0.1520000 |
0.2464000 |
0.3790000 |
0.3141000 |
0.1984000 |
0.2524000 |
34.78 |
70.0 |
59 |
857.70 |
1.38 |
45.76 |
0 |
45.76 |
0/1 |
| chr1 |
236557771 |
rs966365 |
G |
A |
. |
PASS |
0.4682000 |
0.8631000 |
0.9187000 |
0.8250000 |
0.9366000 |
0.7768000 |
36.37 |
70.0 |
81 |
1000.00 |
14.88 |
46.91 |
0 |
46.91 |
0/1 |
| chr1 |
236572475 |
rs669710 |
A |
G |
. |
PASS |
0.4584000 |
0.4899000 |
0.2927000 |
0.5785000 |
0.5010000 |
0.4619000 |
35.88 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236574267 |
rs630891 |
T |
C |
. |
PASS |
0.5477000 |
0.6873000 |
0.3899000 |
0.6660000 |
0.6677000 |
0.5825000 |
36.64 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236590629 |
rs636378 |
C |
T |
. |
PASS |
0.1316000 |
0.4481000 |
0.2609000 |
0.5815000 |
0.4703000 |
0.3580000 |
35.91 |
70.0 |
11 |
411.98 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236590659 |
rs636048 |
G |
C |
. |
PASS |
0.1316000 |
0.4481000 |
0.2619000 |
0.5815000 |
0.4703000 |
0.3582000 |
36.45 |
70.0 |
22 |
867.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236590816 |
rs635487 |
T |
G |
. |
PASS |
0.2670000 |
0.4582000 |
0.2619000 |
0.5815000 |
0.4703000 |
0.3954000 |
36.2 |
70.0 |
15 |
574.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236700807 |
rs1126407 |
T |
A |
. |
PASS |
0.4448000 |
0.5072000 |
0.4762000 |
0.6759000 |
0.4121000 |
0.4998000 |
36.69 |
70.0 |
39 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236700823 |
rs1041934 |
T |
C |
. |
PASS |
0.4455000 |
0.5072000 |
0.4762000 |
0.6759000 |
0.4121000 |
0.5000000 |
37.0 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236700857 |
rs1041935 |
C |
T |
. |
PASS |
0.4455000 |
0.5072000 |
0.4762000 |
0.6759000 |
0.4121000 |
0.5000000 |
36.27 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236700982 |
rs2737706 |
T |
C |
. |
PASS |
0.4455000 |
0.5072000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.5002000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236702117 |
rs2244809 |
T |
G |
. |
PASS |
0.6657000 |
0.6311000 |
0.6577000 |
0.7078000 |
0.4785000 |
0.6312000 |
36.67 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236702153 |
rs2244808 |
G |
A |
. |
PASS |
0.4448000 |
0.5072000 |
0.4573000 |
0.6750000 |
0.4121000 |
0.4958000 |
36.83 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236702208 |
rs35499589 |
GCA |
GTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.69 |
70.0 |
100 |
1000.00 |
1.84 |
98.00 |
0 |
100.00 |
1/1 |
| chr1 |
236702374 |
rs2472126 |
G |
A |
. |
PASS |
0.2738000 |
0.4640000 |
0.4752000 |
0.6173000 |
0.3947000 |
0.4333000 |
36.62 |
70.0 |
63 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236702447 |
rs12744425 |
T |
G |
. |
PASS |
0.4085000 |
0.4971000 |
0.3819000 |
0.6710000 |
0.3906000 |
0.4647000 |
37.0 |
70.0 |
23 |
921.09 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236702450 |
rs12744427 |
T |
C |
. |
PASS |
0.4440000 |
0.5072000 |
0.4762000 |
0.6759000 |
0.4100000 |
0.4992000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236702475 |
rs11807205 |
A |
G |
. |
PASS |
0.4425000 |
0.5000000 |
0.4762000 |
0.6720000 |
0.3793000 |
0.4910000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236703832 |
rs34818366 |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236706352 |
rs2758174 |
A |
C |
. |
PASS |
0.4448000 |
0.5086000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.5002000 |
36.41 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236706371 |
rs2758175 |
A |
G |
. |
PASS |
0.4448000 |
0.5086000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.5002000 |
36.06 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236706425 |
rs2244267 |
G |
A |
. |
PASS |
0.4448000 |
0.5086000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.5002000 |
35.59 |
70.0 |
17 |
650.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236706780 |
rs2243527 |
C |
T |
. |
PASS |
0.7005000 |
0.7622000 |
0.6865000 |
0.7406000 |
0.5143000 |
0.6779000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236706862 |
rs2243525 |
G |
C |
. |
PASS |
0.7005000 |
0.7622000 |
0.6865000 |
0.7396000 |
0.5143000 |
0.6777000 |
36.14 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236707007 |
rs2799410 |
C |
T |
. |
PASS |
0.2239000 |
0.4769000 |
0.4831000 |
0.6362000 |
0.4049000 |
0.4293000 |
35.06 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236707036 |
rs2794786 |
A |
T |
. |
PASS |
0.4448000 |
0.5086000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.5002000 |
36.29 |
70.0 |
17 |
658.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236707045 |
rs2799409 |
C |
T |
. |
PASS |
0.4448000 |
0.5086000 |
0.4772000 |
0.6769000 |
0.4121000 |
0.5004000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236708022 |
rs5781896 |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
70.0 |
11 |
330.84 |
9.09 |
90.91 |
0 |
90.91 |
0/1 |
| chr1 |
236708224 |
rs2244063 |
A |
C |
. |
PASS |
0.4448000 |
0.5086000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.5002000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236711297 |
rs2254823 |
A |
T |
. |
PASS |
0.4448000 |
0.5101000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.5004000 |
36.45 |
70.0 |
22 |
867.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236711323 |
rs15701 |
T |
C |
. |
PASS |
0.4448000 |
0.5101000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.5004000 |
36.41 |
69.51 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236714064 |
rs6989 |
A |
C |
. |
PASS |
0.4342000 |
0.5086000 |
0.4762000 |
0.6750000 |
0.4121000 |
0.4970000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236714292 |
rs373763274,rs374936841,rs376372551,rs55866014 |
T |
TAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
70.0 |
35 |
1000.00 |
8.25 |
51.43 |
0 |
85.71 |
0/1 |
| chr1 |
236714292 |
. |
T |
TA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.4 |
70.0 |
35 |
1000.00 |
6.23 |
31.43 |
0 |
85.71 |
0/1 |
| chr1 |
236714335 |
rs2254487 |
C |
T |
. |
PASS |
0.2209000 |
0.4741000 |
0.4772000 |
0.6362000 |
0.4049000 |
0.4269000 |
36.4 |
70.0 |
20 |
787.91 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236716959 |
rs2275685 |
C |
T |
. |
PASS |
0.3865000 |
0.5072000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.4846000 |
37.0 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236717104 |
rs2275686 |
A |
G |
. |
PASS |
0.3865000 |
0.5086000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.4848000 |
34.88 |
70.0 |
17 |
638.58 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236717926 |
rs2275687 |
T |
C |
. |
PASS |
0.3865000 |
0.5086000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.4848000 |
36.42 |
69.68 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236718524 |
rs6668848 |
G |
C |
. |
PASS |
0.1914000 |
0.4654000 |
0.4722000 |
0.6233000 |
0.3855000 |
0.4105000 |
37.0 |
70.0 |
20 |
795.78 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236718561 |
rs6668926 |
G |
A |
. |
PASS |
0.3865000 |
0.5072000 |
0.4772000 |
0.6759000 |
0.4121000 |
0.4846000 |
37.0 |
70.0 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236718620 |
rs1126627 |
T |
C |
. |
PASS |
0.3858000 |
0.5086000 |
0.4782000 |
0.6759000 |
0.4121000 |
0.4848000 |
36.66 |
70.0 |
70 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236719135 |
rs1885532 |
T |
C |
. |
PASS |
0.8775000 |
0.8833000 |
0.9593000 |
0.8022000 |
0.8436000 |
0.8730000 |
36.22 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236719193 |
rs1885533 |
A |
G |
. |
PASS |
0.3865000 |
0.5086000 |
0.4782000 |
0.6759000 |
0.4121000 |
0.4850000 |
36.53 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236719259 |
rs1885534 |
G |
A |
. |
PASS |
0.0340000 |
0.4582000 |
0.3839000 |
0.6233000 |
0.3845000 |
0.3500000 |
36.37 |
70.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236721610 |
rs2275688 |
G |
A |
. |
PASS |
0.6074000 |
0.6297000 |
0.6538000 |
0.7078000 |
0.4785000 |
0.6148000 |
35.85 |
69.73 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236721660 |
rs2275689 |
T |
C |
. |
PASS |
0.7020000 |
0.7622000 |
0.6825000 |
0.7406000 |
0.5133000 |
0.6773000 |
36.52 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236721731 |
rs819431 |
T |
C |
. |
PASS |
0.9985000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9996000 |
36.7 |
70.0 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236722489 |
rs2146122 |
C |
T |
. |
PASS |
0.6074000 |
0.6326000 |
0.6538000 |
0.7097000 |
0.4785000 |
0.6156000 |
35.36 |
69.09 |
22 |
847.43 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236723176 |
. |
GGC |
GAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.71 |
69.05 |
21 |
837.55 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236724504 |
rs1077439 |
G |
A |
. |
PASS |
0.4501000 |
0.6210000 |
0.6538000 |
0.7078000 |
0.5133000 |
0.5789000 |
37.0 |
70.0 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236724605 |
rs1077438 |
G |
T |
. |
PASS |
0.4493000 |
0.6210000 |
0.6538000 |
0.7078000 |
0.5133000 |
0.5787000 |
35.91 |
70.0 |
22 |
855.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236729867 |
rs2758172 |
C |
T |
. |
PASS |
0.2542000 |
0.4870000 |
0.4772000 |
0.6362000 |
0.4039000 |
0.4373000 |
36.2 |
70.0 |
15 |
579.06 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236735939 |
rs2853602 |
T |
C |
. |
PASS |
0.0318000 |
0.4640000 |
0.4712000 |
0.6233000 |
0.3926000 |
0.3694000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236740039 |
rs6658793 |
G |
C |
. |
PASS |
0.4259000 |
0.6095000 |
0.6518000 |
0.7008000 |
0.4642000 |
0.5595000 |
37.0 |
70.0 |
35 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236744712 |
rs4518892 |
C |
A |
. |
PASS |
0.1316000 |
0.4957000 |
0.4762000 |
0.6710000 |
0.4131000 |
0.4147000 |
36.48 |
70.0 |
23 |
909.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236746275 |
rs2794769 |
G |
C |
. |
PASS |
0.3003000 |
0.5922000 |
0.6518000 |
0.6849000 |
0.4530000 |
0.5186000 |
37.0 |
70.0 |
17 |
670.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236746443 |
rs2794768 |
C |
T |
. |
PASS |
0.3003000 |
0.5922000 |
0.6518000 |
0.6849000 |
0.4530000 |
0.5186000 |
36.48 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236748505 |
rs1006456 |
T |
C |
. |
PASS |
0.3003000 |
0.5922000 |
0.6518000 |
0.6849000 |
0.4530000 |
0.5186000 |
36.74 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236749649 |
rs2794763 |
T |
C |
. |
PASS |
0.0348000 |
0.4640000 |
0.4712000 |
0.6223000 |
0.3875000 |
0.3690000 |
36.17 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236749817 |
rs2799420 |
C |
T |
. |
PASS |
0.3003000 |
0.5922000 |
0.6518000 |
0.6849000 |
0.4530000 |
0.5186000 |
35.0 |
70.0 |
18 |
680.35 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236755427 |
rs2794759 |
A |
G |
. |
PASS |
0.3290000 |
0.6009000 |
0.7242000 |
0.6998000 |
0.5276000 |
0.5595000 |
37.0 |
70.0 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236755814 |
rs2794757 |
G |
A |
. |
PASS |
0.3290000 |
0.6009000 |
0.7232000 |
0.6998000 |
0.5276000 |
0.5593000 |
37.0 |
68.33 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236755837 |
rs2564739 |
C |
T |
. |
PASS |
0.3290000 |
0.6009000 |
0.7242000 |
0.6998000 |
0.5276000 |
0.5595000 |
34.75 |
68.75 |
16 |
596.81 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236757200 |
rs2564738 |
A |
G |
. |
PASS |
0.3290000 |
0.6009000 |
0.7242000 |
0.6998000 |
0.5276000 |
0.5595000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236757229 |
rs2794754 |
G |
A |
. |
PASS |
0.3290000 |
0.6009000 |
0.7242000 |
0.6998000 |
0.5276000 |
0.5595000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236758887 |
rs2794751 |
T |
C |
. |
PASS |
0.3290000 |
0.6009000 |
0.7242000 |
0.6998000 |
0.5276000 |
0.5595000 |
36.33 |
69.63 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236759060 |
rs2794750 |
T |
C |
. |
PASS |
0.3177000 |
0.5937000 |
0.7242000 |
0.6849000 |
0.5174000 |
0.5505000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236767176 |
rs1529541 |
C |
G |
. |
PASS |
0.2262000 |
0.4856000 |
0.4772000 |
0.6312000 |
0.4029000 |
0.4285000 |
36.08 |
70.0 |
13 |
491.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236767178 |
rs375752396,rs5781902 |
AG |
A |
. |
PASS |
0.4062000 |
0.6671000 |
0.6429000 |
0.6282000 |
0.5092000 |
0.5547000 |
34.6 |
70.0 |
16 |
303.51 |
10.00 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
236767181 |
. |
GG |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
67.14 |
16 |
79.94 |
37.50 |
25.00 |
0 |
43.75 |
0/1 |
| chr1 |
236767330 |
rs10802551 |
A |
G |
. |
PASS |
0.3290000 |
0.7205000 |
0.7520000 |
0.6928000 |
0.5429000 |
0.5833000 |
36.43 |
70.0 |
84 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236876085 |
rs7516579 |
G |
A |
. |
PASS |
0.4213000 |
0.5965000 |
0.5893000 |
0.6759000 |
0.5481000 |
0.5553000 |
37.0 |
70.0 |
67 |
1000.00 |
4.88 |
49.25 |
0 |
49.25 |
0/1 |
| chr1 |
236876177 |
rs707209 |
T |
C |
. |
PASS |
0.9992000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9998000 |
35.55 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236881403 |
rs2275399 |
C |
T |
. |
PASS |
0.0446000 |
0.4568000 |
0.4206000 |
0.6243000 |
0.3753000 |
0.3584000 |
35.0 |
70.0 |
12 |
441.74 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236882110 |
rs1341865 |
G |
A |
. |
PASS |
0.9750000 |
0.9957000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9926000 |
37.0 |
70.0 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236882303 |
rs1341864 |
T |
C |
. |
PASS |
0.9750000 |
0.9957000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9926000 |
36.41 |
70.0 |
122 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236883421 |
rs1341863 |
C |
T |
. |
PASS |
0.8139000 |
0.8559000 |
0.9831000 |
0.9960000 |
0.9693000 |
0.9207000 |
36.25 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236883564 |
rs1341862 |
G |
A |
. |
PASS |
0.8192000 |
0.8573000 |
0.9831000 |
0.9960000 |
0.9693000 |
0.9223000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236897633 |
rs707203 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236899899 |
rs11355106 |
TC |
T |
. |
PASS |
0.3608000 |
0.6628000 |
0.4802000 |
0.7197000 |
0.5112000 |
0.5282000 |
36.43 |
70.0 |
107 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236900018 |
rs7542508 |
G |
A |
. |
PASS |
0.0817000 |
0.4452000 |
0.3909000 |
0.5984000 |
0.3957000 |
0.3594000 |
36.59 |
70.0 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236902560 |
rs7527525 |
C |
T |
. |
PASS |
0.0893000 |
0.4539000 |
0.4038000 |
0.6133000 |
0.4172000 |
0.3724000 |
35.96 |
70.0 |
23 |
901.21 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236902594 |
rs2288601 |
C |
G |
. |
PASS |
0.7640000 |
0.7853000 |
0.7837000 |
0.7753000 |
0.7352000 |
0.7676000 |
36.08 |
70.0 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236902865 |
rs2288602 |
A |
C |
. |
PASS |
0.1172000 |
0.4755000 |
0.4802000 |
0.6501000 |
0.5051000 |
0.4227000 |
36.5 |
69.72 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236902955 |
rs7544174 |
T |
C |
. |
PASS |
0.1180000 |
0.4769000 |
0.4702000 |
0.6501000 |
0.5031000 |
0.4207000 |
37.0 |
70.0 |
10 |
382.23 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236924506 |
rs2282366 |
A |
G |
. |
PASS |
0.7852000 |
0.8674000 |
0.7421000 |
0.8877000 |
0.7321000 |
0.7981000 |
35.82 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
236926030 |
rs1051251 |
A |
G |
. |
PASS |
0.0287000 |
0.5231000 |
0.3532000 |
0.5586000 |
0.4427000 |
0.3498000 |
35.8 |
70.0 |
10 |
301.24 |
5.00 |
80.00 |
0 |
100.00 |
0/1 |
| chr1 |
236972186 |
rs12759827 |
A |
G |
. |
PASS |
0.0129000 |
0.1686000 |
0.0010000 |
0.2863000 |
0.0521000 |
0.0946000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237038161 |
rs1770449 |
T |
C |
. |
PASS |
0.0446000 |
0.2997000 |
0.2222000 |
0.4095000 |
0.2658000 |
0.2322000 |
36.82 |
70.0 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237144731 |
rs6671297 |
G |
C |
. |
PASS |
0.2088000 |
0.4769000 |
0.5417000 |
0.5288000 |
0.4591000 |
0.4261000 |
36.28 |
69.46 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237199775 |
rs2385576 |
T |
G |
. |
PASS |
0.3192000 |
0.4568000 |
0.5774000 |
0.5328000 |
0.4530000 |
0.4593000 |
36.66 |
70.0 |
51 |
1000.00 |
1.23 |
68.63 |
0 |
68.63 |
0/1 |
| chr1 |
237471081 |
rs10802600 |
T |
C |
. |
PASS |
0.6036000 |
0.3386000 |
0.4167000 |
0.3996000 |
0.5624000 |
0.4802000 |
36.82 |
70.0 |
65 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237617757 |
rs3765097 |
C |
T |
. |
PASS |
0.2769000 |
0.5447000 |
0.7391000 |
0.5994000 |
0.6043000 |
0.5357000 |
36.17 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237620049 |
rs2045955 |
T |
C |
. |
PASS |
0.2716000 |
0.5245000 |
0.7788000 |
0.5596000 |
0.6022000 |
0.5311000 |
36.71 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237711797 |
rs2253273 |
A |
G |
. |
PASS |
0.5378000 |
0.9510000 |
0.8720000 |
0.9583000 |
0.9652000 |
0.8303000 |
36.41 |
69.76 |
82 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237730124 |
rs2805390 |
A |
G |
. |
PASS |
0.7020000 |
0.9697000 |
0.9990000 |
0.9712000 |
0.9714000 |
0.9056000 |
36.52 |
69.2 |
25 |
996.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237732395 |
rs2805396 |
G |
A |
. |
PASS |
0.2443000 |
0.7176000 |
0.2619000 |
0.6978000 |
0.6963000 |
0.4928000 |
37.0 |
70.0 |
38 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237732673 |
rs12740534 |
C |
T |
. |
PASS |
0.0023000 |
0.0692000 |
0.0000000 |
0.0417000 |
0.0061000 |
0.0197680 |
36.43 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237753074 |
rs11331089,rs371111802 |
AT |
A |
. |
PASS |
0.0499000 |
0.5072000 |
0.2659000 |
0.4573000 |
0.2883000 |
0.2851000 |
36.45 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237753364 |
rs2805409 |
A |
C |
. |
PASS |
0.1437000 |
0.5375000 |
0.3105000 |
0.4901000 |
0.3252000 |
0.3369000 |
36.45 |
70.0 |
22 |
867.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237753390 |
rs2805410 |
A |
G |
. |
PASS |
0.1437000 |
0.5375000 |
0.3115000 |
0.4901000 |
0.3252000 |
0.3371000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237754340 |
rs1332777 |
A |
G |
. |
PASS |
0.1437000 |
0.5403000 |
0.3105000 |
0.4911000 |
0.3252000 |
0.3375000 |
36.5 |
70.0 |
24 |
954.99 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237755188 |
rs2618713 |
C |
T |
. |
PASS |
0.1437000 |
0.5403000 |
0.3105000 |
0.4911000 |
0.3170000 |
0.3359000 |
36.31 |
69.62 |
52 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237755203 |
rs2779430 |
T |
C |
. |
PASS |
0.1437000 |
0.5403000 |
0.3105000 |
0.4911000 |
0.3252000 |
0.3375000 |
36.72 |
70.0 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237757027 |
rs1478915 |
G |
A |
. |
PASS |
0.1452000 |
0.5403000 |
0.3105000 |
0.4911000 |
0.3252000 |
0.3379000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237765470 |
rs791541 |
A |
T |
. |
PASS |
0.0507000 |
0.5245000 |
0.2659000 |
0.4771000 |
0.2955000 |
0.2931000 |
37.0 |
70.0 |
22 |
879.32 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237794603 |
rs1759123 |
A |
G |
. |
PASS |
0.3729000 |
0.7450000 |
0.5784000 |
0.7376000 |
0.7618000 |
0.6150000 |
34.6 |
70.0 |
11 |
131.26 |
3.64 |
45.45 |
0 |
45.45 |
0/1 |
| chr1 |
237796837 |
rs10802626 |
G |
A |
. |
PASS |
0.5310000 |
0.3818000 |
0.4782000 |
0.3221000 |
0.3814000 |
0.4285000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237797082 |
rs1967579 |
T |
G |
. |
PASS |
0.5734000 |
0.3862000 |
0.4792000 |
0.3221000 |
0.3824000 |
0.4407000 |
36.08 |
70.0 |
13 |
491.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237798342 |
rs41305973 |
G |
A |
. |
PASS |
0.0083000 |
0.0389000 |
0.0000000 |
0.1014000 |
0.0072000 |
0.0294000 |
36.33 |
70.0 |
44 |
574.95 |
11.62 |
40.91 |
0 |
40.91 |
0/1 |
| chr1 |
237801770 |
rs707189 |
T |
C |
. |
PASS |
0.8359000 |
0.9870000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9549000 |
36.49 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237802559 |
rs530109 |
T |
C |
. |
PASS |
0.9939000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9982000 |
35.67 |
70.0 |
18 |
692.36 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237813126 |
rs625006 |
A |
G |
. |
PASS |
0.5151000 |
0.5115000 |
0.8105000 |
0.4374000 |
0.5900000 |
0.5731000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237814783 |
rs684923 |
C |
T |
. |
PASS |
0.4864000 |
0.5029000 |
0.7956000 |
0.4324000 |
0.5624000 |
0.5549000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237817514 |
rs3831940 |
GA |
G |
. |
PASS |
0.5930000 |
0.3501000 |
0.5437000 |
0.2286000 |
0.4458000 |
0.4475000 |
34.73 |
70.0 |
11 |
389.41 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237817784 |
rs669375 |
A |
G |
. |
PASS |
0.3124000 |
0.3098000 |
0.5228000 |
0.1948000 |
0.4284000 |
0.3534000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237824332 |
rs471647 |
G |
A |
. |
PASS |
0.9818000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9948000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237831103 |
rs477245 |
C |
A |
. |
PASS |
0.8275000 |
0.9870000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9521000 |
35.8 |
70.0 |
10 |
366.07 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237831382 |
rs56090696 |
G |
A |
. |
PASS |
0.0000000 |
0.0202000 |
0.0000000 |
0.0219000 |
0.0000000 |
0.0071885 |
37.0 |
70.0 |
11 |
101.50 |
0.00 |
36.36 |
0 |
36.36 |
0/1 |
| chr1 |
237863718 |
rs2797436 |
T |
G |
. |
PASS |
0.8880000 |
0.9914000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9692000 |
36.49 |
70.0 |
47 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237865203 |
rs939699 |
C |
T |
. |
PASS |
0.8880000 |
0.9914000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9692000 |
36.45 |
70.0 |
22 |
871.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237869704 |
rs12040571 |
C |
A |
. |
PASS |
0.3185000 |
0.5965000 |
0.3978000 |
0.6750000 |
0.6176000 |
0.5030000 |
37.0 |
69.09 |
58 |
707.75 |
3.45 |
37.93 |
0 |
37.93 |
0/1 |
| chr1 |
237881770 |
rs2797441 |
C |
T |
. |
PASS |
0.8555000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9605000 |
35.22 |
68.52 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237890437 |
rs2685301 |
C |
T |
. |
PASS |
0.8548000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9603000 |
36.28 |
70.0 |
50 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237893674 |
rs2797445 |
C |
T |
. |
PASS |
0.9470000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9852000 |
37.0 |
70.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237923053 |
rs2253831 |
C |
T |
. |
PASS |
0.8275000 |
0.7464000 |
0.8204000 |
0.6988000 |
0.6871000 |
0.7616000 |
35.0 |
70.0 |
18 |
680.35 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
237946964 |
rs790889 |
T |
C |
. |
PASS |
0.2806000 |
0.4020000 |
0.6964000 |
0.3201000 |
0.4121000 |
0.4147000 |
36.59 |
70.0 |
50 |
1000.00 |
17.66 |
58.00 |
0 |
58.00 |
0/1 |
| chr1 |
237951451 |
rs2256242 |
A |
G |
. |
PASS |
0.7935000 |
0.5187000 |
0.7024000 |
0.5099000 |
0.5706000 |
0.6366000 |
36.54 |
70.0 |
39 |
924.16 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
237955649 |
rs72398272,rs68129840 |
CTGTG |
C |
. |
PASS |
0.2640000 |
0.6254000 |
0.6746000 |
0.5696000 |
0.6227000 |
0.5282000 |
34.64 |
70.0 |
145 |
1000.00 |
7.44 |
36.55 |
0 |
36.55 |
0/1 |
| chr1 |
237955664 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.28 |
70.0 |
139 |
1000.00 |
1.35 |
35.97 |
1 |
35.97 |
0/1 |
| chr1 |
237955664 |
. |
TGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGT |
TGTGTGTGTGTGTGCGCGCGTGTGTGTGTGTGTGCGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
70.0 |
78 |
478.13 |
7.69 |
15.38 |
1 |
100.00 |
0/1 |
| chr1 |
237955664 |
. |
TGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGT |
TGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
78 |
478.13 |
15.44 |
62.82 |
1 |
100.00 |
0/1 |
| chr1 |
237955665 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.28 |
70.0 |
138 |
1000.00 |
2.14 |
36.23 |
1 |
36.23 |
0/1 |
| chr1 |
237955666 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
135 |
1000.00 |
6.71 |
37.78 |
1 |
37.78 |
0/1 |
| chr1 |
237955667 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
134 |
1000.00 |
7.55 |
38.06 |
1 |
38.06 |
0/1 |
| chr1 |
237955668 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
135 |
1000.00 |
5.23 |
37.78 |
1 |
37.78 |
0/1 |
| chr1 |
237955669 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
129 |
1000.00 |
7.30 |
39.53 |
1 |
39.53 |
0/1 |
| chr1 |
237955670 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
133 |
1000.00 |
3.89 |
38.35 |
1 |
38.35 |
0/1 |
| chr1 |
237955671 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.32 |
70.0 |
128 |
1000.00 |
6.62 |
39.84 |
1 |
41.41 |
0/1 |
| chr1 |
237955672 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
131 |
1000.00 |
2.51 |
38.93 |
1 |
38.93 |
0/1 |
| chr1 |
237955673 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.13 |
70.0 |
127 |
1000.00 |
5.93 |
40.16 |
1 |
54.33 |
0/1 |
| chr1 |
237955674 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
123 |
1000.00 |
1.43 |
41.46 |
1 |
41.46 |
0/1 |
| chr1 |
237955675 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
70.0 |
120 |
1000.00 |
0.78 |
42.50 |
1 |
43.33 |
0/1 |
| chr1 |
237955676 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
118 |
1000.00 |
0.90 |
43.22 |
1 |
43.22 |
0/1 |
| chr1 |
237955677 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.3 |
70.0 |
116 |
1000.00 |
2.74 |
43.97 |
1 |
88.79 |
0/1 |
| chr1 |
237955678 |
rs144369382 |
T |
C |
. |
PASS |
0.2640000 |
0.6254000 |
0.6746000 |
0.5696000 |
0.6227000 |
0.5282000 |
36.3 |
70.0 |
116 |
1000.00 |
4.77 |
44.83 |
1 |
88.79 |
0/1 |
| chr1 |
237955678 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
116 |
1000.00 |
1.01 |
43.97 |
1 |
43.97 |
0/1 |
| chr1 |
237955679 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.54 |
70.0 |
115 |
1000.00 |
1.94 |
44.35 |
1 |
90.43 |
0/1 |
| chr1 |
237955680 |
rs146659498 |
T |
C |
. |
PASS |
0.2640000 |
0.6254000 |
0.6746000 |
0.5696000 |
0.6227000 |
0.5282000 |
36.54 |
70.0 |
115 |
1000.00 |
2.17 |
46.09 |
1 |
90.43 |
0/1 |
| chr1 |
237955680 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
70.0 |
116 |
1000.00 |
0.93 |
44.83 |
1 |
44.83 |
0/1 |
| chr1 |
237955681 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.98 |
70.0 |
112 |
1000.00 |
0.55 |
46.43 |
1 |
52.68 |
0/1 |
| chr1 |
237955682 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
114 |
1000.00 |
2.89 |
44.74 |
1 |
44.74 |
0/1 |
| chr1 |
237955683 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.11 |
70.0 |
110 |
1000.00 |
3.21 |
46.36 |
1 |
49.09 |
0/1 |
| chr1 |
237955684 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
113 |
1000.00 |
3.85 |
45.13 |
1 |
45.13 |
0/1 |
| chr1 |
237955685 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
70.0 |
111 |
1000.00 |
5.83 |
45.95 |
1 |
46.85 |
0/1 |
| chr1 |
237955686 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
112 |
1000.00 |
3.05 |
45.54 |
1 |
45.54 |
0/1 |
| chr1 |
237955687 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
109 |
1000.00 |
2.37 |
46.79 |
1 |
46.79 |
0/1 |
| chr1 |
237955688 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
109 |
1000.00 |
2.37 |
46.79 |
1 |
46.79 |
0/1 |
| chr1 |
237955689 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
106 |
1000.00 |
3.55 |
48.11 |
1 |
48.11 |
0/1 |
| chr1 |
237955690 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
108 |
1000.00 |
3.38 |
47.22 |
1 |
47.22 |
0/1 |
| chr1 |
237955691 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
107 |
1000.00 |
2.53 |
47.66 |
1 |
47.66 |
0/1 |
| chr1 |
237955692 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.31 |
70.0 |
108 |
1000.00 |
1.57 |
48.15 |
1 |
48.15 |
0/1 |
| chr1 |
237955693 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
106 |
1000.00 |
3.55 |
48.11 |
1 |
48.11 |
0/1 |
| chr1 |
237955694 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
106 |
1000.00 |
1.66 |
48.11 |
1 |
48.11 |
0/1 |
| chr1 |
237955695 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
70.0 |
101 |
1000.00 |
6.99 |
50.50 |
1 |
50.50 |
0/1 |
| chr1 |
237955696 |
. |
TG |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.32 |
70.0 |
100 |
1000.00 |
2.31 |
52.00 |
1 |
53.00 |
0/1 |
| chr1 |
237955697 |
. |
GC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.35 |
70.0 |
90 |
1000.00 |
10.09 |
57.78 |
1 |
61.11 |
0/1 |
| chr1 |
237955698 |
. |
CG |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.33 |
70.0 |
100 |
478.13 |
42.38 |
21.00 |
1 |
21.00 |
0/1 |
| chr1 |
237955699 |
. |
GT |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
33.91 |
70.0 |
99 |
484.14 |
39.25 |
21.21 |
1 |
22.22 |
0/1 |
| chr1 |
237955708 |
. |
T |
C |
. |
PASS |
0.0015000 |
0.0216000 |
0.0129000 |
0.0398000 |
0.0204000 |
0.0179710 |
35.77 |
70.0 |
83 |
1000.00 |
0.49 |
46.99 |
0 |
46.99 |
0/1 |
| chr1 |
237957146 |
rs790902 |
G |
A |
. |
PASS |
0.5295000 |
0.7968000 |
0.9454000 |
0.6312000 |
0.8538000 |
0.7340000 |
36.08 |
70.0 |
23 |
429.31 |
16.05 |
56.52 |
0 |
56.52 |
0/1 |
| chr1 |
237957161 |
rs790901 |
A |
G |
. |
PASS |
0.5688000 |
0.8040000 |
0.9494000 |
0.6501000 |
0.8926000 |
0.7576000 |
37.0 |
70.0 |
34 |
533.52 |
10.29 |
47.06 |
0 |
47.06 |
0/1 |
| chr1 |
237957309 |
rs790900 |
A |
C |
. |
PASS |
0.5772000 |
0.7925000 |
0.9494000 |
0.6431000 |
0.8620000 |
0.7508000 |
35.74 |
70.0 |
44 |
600.57 |
3.59 |
43.18 |
0 |
43.18 |
0/1 |
| chr1 |
237965094 |
rs2794820 |
G |
T |
. |
PASS |
0.4024000 |
0.4092000 |
0.6349000 |
0.3966000 |
0.4703000 |
0.4623000 |
37.0 |
70.0 |
20 |
153.80 |
26.67 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
237965131 |
rs9428384 |
G |
A |
. |
PASS |
0.1944000 |
0.3948000 |
0.6349000 |
0.3956000 |
0.4703000 |
0.4052000 |
37.0 |
70.0 |
35 |
321.67 |
19.74 |
31.43 |
0 |
31.43 |
0/1 |
| chr1 |
237969638 |
rs790879 |
A |
G |
. |
PASS |
0.2179000 |
0.2709000 |
0.4960000 |
0.1928000 |
0.2771000 |
0.2877000 |
36.08 |
68.46 |
28 |
414.25 |
12.64 |
46.43 |
0 |
46.43 |
0/1 |
| chr1 |
238045995 |
rs2275694 |
T |
C |
. |
PASS |
0.3707000 |
0.1916000 |
0.4276000 |
0.2107000 |
0.2464000 |
0.3009000 |
33.73 |
70.0 |
28 |
306.71 |
16.88 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
238053524 |
rs538499 |
T |
C |
. |
PASS |
0.3275000 |
0.3458000 |
0.6310000 |
0.3330000 |
0.5675000 |
0.4391000 |
37.0 |
70.0 |
42 |
1000.00 |
6.57 |
69.05 |
0 |
69.05 |
0/1 |
| chr1 |
238090257 |
rs548164 |
A |
G |
. |
PASS |
0.7519000 |
0.3156000 |
0.4355000 |
0.2465000 |
0.4049000 |
0.4585000 |
35.91 |
69.91 |
35 |
309.65 |
10.91 |
31.43 |
0 |
31.43 |
0/1 |
| chr1 |
238090514 |
rs545540 |
T |
A |
. |
PASS |
0.7292000 |
0.3141000 |
0.4355000 |
0.2465000 |
0.4049000 |
0.4523000 |
36.54 |
69.88 |
40 |
917.00 |
7.31 |
65.00 |
0 |
65.00 |
0/1 |
| chr1 |
238090601 |
rs80150242 |
GGGGTCA |
G |
. |
PASS |
0.7284000 |
0.3141000 |
0.4355000 |
0.2465000 |
0.4049000 |
0.4521000 |
37.0 |
69.75 |
17 |
408.04 |
2.94 |
70.59 |
0 |
70.59 |
0/1 |
| chr1 |
238090615 |
rs2790341 |
T |
C |
. |
PASS |
0.7292000 |
0.3141000 |
0.4355000 |
0.2465000 |
0.4049000 |
0.4523000 |
37.0 |
69.73 |
15 |
381.85 |
3.64 |
73.33 |
0 |
73.33 |
0/1 |
| chr1 |
238463851 |
rs568276 |
G |
T |
. |
PASS |
0.6936000 |
0.3790000 |
0.4464000 |
0.3519000 |
0.3119000 |
0.4571000 |
36.14 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
238654738 |
rs72761444 |
G |
T |
. |
PASS |
0.0015000 |
0.0144000 |
0.0000000 |
0.0398000 |
0.0112000 |
0.0125800 |
35.0 |
70.0 |
12 |
165.87 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
238820015 |
rs12090387 |
T |
C |
. |
PASS |
0.3782000 |
0.5000000 |
0.6369000 |
0.5875000 |
0.5941000 |
0.5314000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
239215774 |
rs1396901 |
T |
C |
. |
PASS |
0.9168000 |
0.8213000 |
0.9385000 |
0.8509000 |
0.9162000 |
0.8946000 |
37.0 |
70.0 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
239215857 |
rs56037071,rs35410036,rs71729035 |
C |
CT |
. |
PASS |
0.3011000 |
0.3631000 |
0.4226000 |
0.5020000 |
0.4836000 |
0.4101000 |
35.98 |
70.0 |
67 |
1000.00 |
2.05 |
71.64 |
0 |
88.06 |
0/1 |
| chr1 |
239215927 |
rs12736994 |
A |
T |
. |
PASS |
0.2027000 |
0.3487000 |
0.3859000 |
0.4911000 |
0.5174000 |
0.3792000 |
35.35 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
239216054 |
rs6688183 |
A |
G |
. |
PASS |
0.5976000 |
0.7233000 |
0.8591000 |
0.8509000 |
0.9131000 |
0.7802000 |
36.64 |
69.67 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
239216186 |
rs12754904 |
G |
A |
. |
PASS |
0.5976000 |
0.7233000 |
0.8621000 |
0.8509000 |
0.9131000 |
0.7808000 |
36.82 |
69.18 |
66 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
239216237 |
rs34669077 |
GCA |
GTG |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
69.75 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
239216264 |
rs6690909 |
T |
C |
. |
PASS |
0.5976000 |
0.7233000 |
0.8611000 |
0.8509000 |
0.9131000 |
0.7806000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
239858725 |
rs6429153 |
A |
C |
. |
PASS |
0.3608000 |
0.4755000 |
0.4722000 |
0.4851000 |
0.4673000 |
0.4449000 |
36.57 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
240176600 |
rs10802825 |
A |
G |
. |
PASS |
0.6936000 |
0.4438000 |
0.3274000 |
0.4026000 |
0.3027000 |
0.4505000 |
35.5 |
70.0 |
47 |
148.23 |
10.64 |
17.02 |
0 |
17.02 |
0/1 |
| chr1 |
240176633 |
rs10802826 |
G |
A |
. |
PASS |
0.3011000 |
0.2450000 |
0.2877000 |
0.2495000 |
0.1800000 |
0.2566000 |
35.67 |
70.0 |
40 |
211.07 |
28.33 |
22.50 |
0 |
22.50 |
0/1 |
| chr1 |
240176653 |
rs10802827 |
A |
G |
. |
PASS |
0.6936000 |
0.4438000 |
0.3274000 |
0.4026000 |
0.3047000 |
0.4509000 |
34.6 |
70.0 |
36 |
252.86 |
37.78 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
240176705 |
rs10802828 |
G |
A |
. |
PASS |
0.6936000 |
0.4438000 |
0.3274000 |
0.4026000 |
0.3047000 |
0.4509000 |
37.0 |
70.0 |
14 |
134.24 |
71.43 |
35.71 |
0 |
35.71 |
0/1 |
| chr1 |
240255568 |
rs140531536,rs72215772,rs71929261 |
GGGC |
G |
. |
PASS |
0.7821000 |
0.7507000 |
0.4514000 |
0.7893000 |
0.7515000 |
0.7067000 |
35.62 |
69.38 |
66 |
995.11 |
11.17 |
48.48 |
0 |
48.48 |
0/1 |
| chr1 |
240256822 |
rs10926124 |
C |
A |
. |
PASS |
0.0900000 |
0.3357000 |
0.3006000 |
0.5249000 |
0.4796000 |
0.3299000 |
35.8 |
70.0 |
89 |
1000.00 |
4.36 |
56.18 |
0 |
56.18 |
0/1 |
| chr1 |
240305899 |
rs12746598 |
C |
T |
. |
PASS |
0.1082000 |
0.3617000 |
0.2510000 |
0.3360000 |
0.4018000 |
0.2752000 |
37.0 |
69.86 |
16 |
211.76 |
21.43 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
240305963 |
rs35489677 |
T |
TAA |
. |
PASS |
0.0015000 |
0.0173000 |
0.0000000 |
0.0189000 |
0.0072000 |
0.0079872 |
37.0 |
68.5 |
37 |
300.04 |
4.42 |
29.73 |
0 |
29.73 |
0/1 |
| chr1 |
240307389 |
rs2355833 |
C |
G |
. |
PASS |
0.9123000 |
0.5922000 |
0.5198000 |
0.6680000 |
0.6912000 |
0.6967000 |
36.14 |
70.0 |
40 |
988.54 |
11.43 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
240307892 |
rs1539200 |
A |
G |
. |
PASS |
0.9183000 |
0.5836000 |
0.5188000 |
0.6561000 |
0.6881000 |
0.6939000 |
37.0 |
69.79 |
38 |
646.79 |
26.32 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
240308147 |
rs10926139 |
T |
C |
. |
PASS |
0.9213000 |
0.5908000 |
0.5188000 |
0.6879000 |
0.7127000 |
0.7069000 |
36.0 |
69.92 |
39 |
828.61 |
5.77 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
240308200 |
rs12127949 |
T |
C |
. |
PASS |
0.9183000 |
0.5821000 |
0.5000000 |
0.6561000 |
0.6912000 |
0.6905000 |
37.0 |
70.0 |
37 |
858.66 |
10.59 |
64.86 |
0 |
64.86 |
0/1 |
| chr1 |
240308348 |
rs10926140 |
C |
G |
. |
PASS |
0.9183000 |
0.5850000 |
0.5020000 |
0.6590000 |
0.6953000 |
0.6927000 |
36.12 |
69.73 |
62 |
1000.00 |
2.44 |
66.13 |
0 |
66.13 |
0/1 |
| chr1 |
240308366 |
rs12127948 |
A |
G |
. |
PASS |
0.2322000 |
0.3761000 |
0.2520000 |
0.3439000 |
0.4039000 |
0.3121000 |
36.71 |
69.71 |
62 |
1000.00 |
3.07 |
67.74 |
0 |
67.74 |
0/1 |
| chr1 |
240308382 |
rs10926141 |
C |
A |
. |
PASS |
0.6362000 |
0.4914000 |
0.4484000 |
0.5239000 |
0.6431000 |
0.5571000 |
36.4 |
69.72 |
60 |
1000.00 |
8.33 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
240351628 |
rs4659948 |
T |
C |
. |
PASS |
0.7905000 |
0.4726000 |
0.3601000 |
0.5845000 |
0.6493000 |
0.5909000 |
33.73 |
70.0 |
18 |
336.80 |
5.05 |
61.11 |
0 |
61.11 |
0/1 |
| chr1 |
240370629 |
rs10926166 |
C |
G |
. |
PASS |
0.2617000 |
0.2507000 |
0.1032000 |
0.4066000 |
0.4151000 |
0.2873000 |
36.43 |
70.0 |
47 |
687.08 |
21.68 |
44.68 |
0 |
44.68 |
0/1 |
| chr1 |
240371106 |
rs11586155 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.12 |
64.72 |
61 |
1000.00 |
16.50 |
52.46 |
0 |
52.46 |
0/1 |
| chr1 |
240371211 |
rs201587786 |
G |
T |
. |
PASS |
0.2330000 |
0.1599000 |
0.0526000 |
0.2396000 |
0.2229000 |
0.1859000 |
35.29 |
67.86 |
50 |
320.17 |
18.67 |
24.00 |
0 |
28.00 |
0/1 |
| chr1 |
240371223 |
. |
C |
T |
. |
PASS |
0.2088000 |
0.2046000 |
0.0883000 |
0.2674000 |
0.3200000 |
0.2175000 |
34.23 |
65.54 |
50 |
324.03 |
44.62 |
26.00 |
0 |
26.00 |
0/1 |
| chr1 |
240371328 |
rs71646895 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.34 |
52.0 |
90 |
833.22 |
17.94 |
31.11 |
0 |
32.22 |
0/1 |
| chr1 |
240371554 |
rs12732924 |
A |
G |
. |
PASS |
0.9992000 |
0.8890000 |
0.9990000 |
0.9245000 |
0.9479000 |
0.9589000 |
35.24 |
68.12 |
34 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
240421383 |
rs10926181 |
G |
A |
. |
PASS |
0.9539000 |
0.7795000 |
0.8403000 |
0.6103000 |
0.5971000 |
0.7682000 |
37.0 |
70.0 |
21 |
238.48 |
16.67 |
38.10 |
0 |
38.10 |
0/1 |
| chr1 |
240421437 |
rs10926182 |
C |
T |
. |
PASS |
0.3676000 |
0.5648000 |
0.5615000 |
0.3658000 |
0.3139000 |
0.4231000 |
37.0 |
70.0 |
10 |
62.74 |
0.00 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
240492543 |
rs6686353 |
G |
A |
. |
PASS |
0.9206000 |
0.6427000 |
0.5000000 |
0.4712000 |
0.4928000 |
0.6236000 |
37.0 |
70.0 |
40 |
766.08 |
3.18 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
240492734 |
rs3795677 |
G |
A |
. |
PASS |
0.3381000 |
0.3588000 |
0.3185000 |
0.2883000 |
0.3067000 |
0.3209000 |
37.0 |
70.0 |
62 |
1000.00 |
6.45 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
240497265 |
rs10157874 |
A |
C |
. |
PASS |
0.9244000 |
0.7046000 |
0.5278000 |
0.5119000 |
0.5092000 |
0.6502000 |
34.82 |
70.0 |
38 |
719.91 |
5.26 |
57.89 |
0 |
57.89 |
0/1 |
| chr1 |
240497598 |
rs12122068 |
T |
C |
. |
PASS |
0.0673000 |
0.3761000 |
0.2510000 |
0.2237000 |
0.2045000 |
0.2053000 |
35.29 |
70.0 |
13 |
208.78 |
10.99 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
240524580 |
rs12095342 |
C |
T |
. |
PASS |
0.6861000 |
0.6311000 |
0.5099000 |
0.4861000 |
0.5061000 |
0.5677000 |
36.65 |
70.0 |
123 |
1000.00 |
1.56 |
56.10 |
0 |
56.10 |
0/1 |
| chr1 |
240637571 |
rs882869 |
A |
G |
. |
PASS |
0.0930000 |
0.4092000 |
0.4851000 |
0.3260000 |
0.2853000 |
0.3001000 |
37.0 |
70.0 |
46 |
539.16 |
19.44 |
36.96 |
0 |
36.96 |
0/1 |
| chr1 |
240656797 |
rs11806449 |
G |
A |
. |
PASS |
0.0530000 |
0.1599000 |
0.3214000 |
0.1819000 |
0.3364000 |
0.2031000 |
35.84 |
70.0 |
66 |
1000.00 |
4.69 |
46.97 |
0 |
46.97 |
0/1 |
| chr1 |
240656841 |
rs45519645 |
A |
T |
. |
PASS |
0.1120000 |
0.2176000 |
0.3462000 |
0.2525000 |
0.3855000 |
0.2554000 |
37.0 |
70.0 |
31 |
371.32 |
5.91 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
240656852 |
rs34695275 |
T |
TA |
. |
PASS |
0.0530000 |
0.1614000 |
0.3204000 |
0.1799000 |
0.3374000 |
0.2029000 |
37.0 |
70.0 |
24 |
213.87 |
25.00 |
25.00 |
0 |
33.33 |
0/1 |
| chr1 |
240934479 |
rs4628499 |
A |
C |
. |
PASS |
0.7095000 |
0.6556000 |
0.5942000 |
0.7883000 |
0.6513000 |
0.6833000 |
36.52 |
69.76 |
25 |
992.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
240975213 |
rs2275742 |
T |
C |
. |
PASS |
0.2148000 |
0.4280000 |
0.4683000 |
0.5557000 |
0.4233000 |
0.4046000 |
37.0 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
240977964 |
rs12744536 |
G |
T |
. |
PASS |
0.3752000 |
0.5778000 |
0.4851000 |
0.7058000 |
0.5665000 |
0.5292000 |
36.64 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241146322 |
rs7520707 |
A |
G |
. |
PASS |
0.3079000 |
0.4006000 |
0.2857000 |
0.4314000 |
0.3845000 |
0.3560000 |
37.0 |
69.05 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241161775 |
rs670659 |
C |
T |
. |
PASS |
0.1641000 |
0.4438000 |
0.3323000 |
0.3857000 |
0.3252000 |
0.3127000 |
35.67 |
70.0 |
18 |
692.36 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241178944 |
rs497743 |
G |
T |
. |
PASS |
0.6407000 |
0.4510000 |
0.3274000 |
0.3777000 |
0.5123000 |
0.4734000 |
35.8 |
70.0 |
34 |
266.74 |
0.00 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
241519098 |
rs4659599 |
T |
A |
. |
PASS |
0.8321000 |
0.9899000 |
0.9921000 |
0.9881000 |
0.9898000 |
0.9483000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241540465 |
rs7521878 |
T |
A |
. |
PASS |
0.6589000 |
0.5519000 |
0.6151000 |
0.4831000 |
0.5961000 |
0.5877000 |
37.0 |
70.0 |
28 |
672.74 |
19.55 |
67.86 |
0 |
67.86 |
0/1 |
| chr1 |
241540533 |
rs6429270 |
A |
C |
. |
PASS |
0.6634000 |
0.5519000 |
0.6151000 |
0.4831000 |
0.5961000 |
0.5889000 |
37.0 |
70.0 |
24 |
434.16 |
13.46 |
54.17 |
0 |
54.17 |
0/1 |
| chr1 |
241663902 |
rs144131869 |
T |
TGAGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.49 |
70.0 |
72 |
1000.00 |
16.37 |
26.39 |
0 |
95.83 |
0/1 |
| chr1 |
241663902 |
rs59736583 |
T |
TGAGAGA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
70.0 |
72 |
1000.00 |
10.84 |
56.94 |
0 |
95.83 |
0/1 |
| chr1 |
241667244 |
rs4659607 |
G |
T |
. |
PASS |
0.8018000 |
0.6859000 |
0.5694000 |
0.7048000 |
0.8855000 |
0.7358000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241712134 |
rs11556464 |
C |
T |
. |
PASS |
0.5280000 |
0.4236000 |
0.2788000 |
0.3042000 |
0.2965000 |
0.3732000 |
37.0 |
70.0 |
20 |
799.93 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241755348 |
rs1053230 |
C |
T |
. |
PASS |
0.0091000 |
0.1282000 |
0.0526000 |
0.2237000 |
0.2076000 |
0.1162000 |
36.54 |
70.0 |
59 |
863.97 |
8.47 |
44.07 |
0 |
44.07 |
0/1 |
| chr1 |
241761349 |
rs45572340 |
T |
C |
. |
PASS |
0.0287000 |
0.1470000 |
0.0764000 |
0.2227000 |
0.2168000 |
0.1304000 |
37.0 |
70.0 |
30 |
336.71 |
17.58 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
241767930 |
rs632966 |
G |
A |
. |
PASS |
0.9175000 |
0.8818000 |
0.8333000 |
0.9523000 |
0.9427000 |
0.9075000 |
36.8 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241838057 |
rs67170285 |
C |
T |
. |
PASS |
0.4266000 |
0.5173000 |
0.3532000 |
0.6571000 |
0.4949000 |
0.4840000 |
36.37 |
70.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241838065 |
rs66585415 |
T |
C |
. |
PASS |
0.5590000 |
0.5476000 |
0.4018000 |
0.7197000 |
0.6104000 |
0.5681000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241847018 |
rs10802979 |
C |
T |
. |
PASS |
0.6846000 |
0.7176000 |
0.5923000 |
0.7833000 |
0.6881000 |
0.6911000 |
36.48 |
69.13 |
23 |
913.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241864716 |
rs10926541 |
G |
A |
. |
PASS |
0.5265000 |
0.4697000 |
0.3879000 |
0.5746000 |
0.6125000 |
0.5172000 |
36.45 |
70.0 |
44 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
241913062 |
rs11432682 |
C |
CT |
. |
PASS |
0.6490000 |
0.5937000 |
0.5546000 |
0.5984000 |
0.6329000 |
0.6090000 |
35.59 |
70.0 |
35 |
532.67 |
15.46 |
48.57 |
0 |
48.57 |
0/1 |
| chr1 |
241933876 |
rs11809239 |
A |
G |
. |
PASS |
0.1876000 |
0.5720000 |
0.5694000 |
0.5944000 |
0.6299000 |
0.4858000 |
37.0 |
70.0 |
18 |
122.20 |
2.22 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
241946766 |
rs953597 |
A |
C |
. |
PASS |
0.4781000 |
0.5101000 |
0.4137000 |
0.6571000 |
0.4980000 |
0.5094000 |
35.5 |
70.0 |
12 |
249.41 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
241951106 |
rs6429313 |
A |
G |
. |
PASS |
0.4599000 |
0.4092000 |
0.4325000 |
0.4095000 |
0.3681000 |
0.4193000 |
37.0 |
70.0 |
13 |
179.02 |
10.26 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
241958401 |
rs61386497,rs146518112 |
C |
CTTGT |
. |
PASS |
0.1906000 |
0.2795000 |
0.4325000 |
0.2465000 |
0.3517000 |
0.2943000 |
35.71 |
70.0 |
13 |
196.20 |
13.19 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
241958409 |
rs55865277 |
C |
T |
. |
PASS |
0.1906000 |
0.2795000 |
0.4325000 |
0.2465000 |
0.3497000 |
0.2939000 |
37.0 |
70.0 |
16 |
253.53 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
241964559 |
rs4658661 |
C |
T |
. |
PASS |
0.1899000 |
0.3934000 |
0.4077000 |
0.5060000 |
0.4765000 |
0.3814000 |
37.0 |
70.0 |
50 |
527.13 |
5.65 |
34.00 |
0 |
34.00 |
0/1 |
| chr1 |
242023898 |
rs4149909 |
A |
G |
. |
PASS |
0.0015000 |
0.0187000 |
0.0000000 |
0.0378000 |
0.0102000 |
0.0125800 |
37.0 |
70.0 |
53 |
643.41 |
23.21 |
37.74 |
0 |
37.74 |
0/1 |
| chr1 |
242030151 |
rs735943 |
A |
G |
. |
PASS |
0.6150000 |
0.6902000 |
0.7956000 |
0.5716000 |
0.5327000 |
0.6370000 |
37.0 |
70.0 |
22 |
883.47 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
242035438 |
rs4149965 |
G |
A |
. |
PASS |
0.0061000 |
0.1354000 |
0.0000000 |
0.2505000 |
0.0982000 |
0.0899000 |
35.24 |
70.0 |
81 |
1000.00 |
6.02 |
50.62 |
0 |
50.62 |
0/1 |
| chr1 |
242042545 |
rs1776148 |
A |
G |
. |
PASS |
0.6884000 |
0.6859000 |
0.8085000 |
0.6511000 |
0.5716000 |
0.6819000 |
36.79 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
242045275 |
rs1635498 |
C |
T |
. |
PASS |
0.8714000 |
0.9784000 |
0.8690000 |
0.9672000 |
0.9243000 |
0.9153000 |
36.03 |
70.0 |
37 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
242048674 |
rs9350 |
C |
T |
. |
PASS |
0.1808000 |
0.3199000 |
0.4683000 |
0.1521000 |
0.1779000 |
0.2516000 |
36.61 |
70.0 |
55 |
1000.00 |
2.23 |
56.36 |
0 |
56.36 |
0/1 |
| chr1 |
242079372 |
rs7512631 |
T |
C |
. |
PASS |
0.9123000 |
0.9928000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9758000 |
37.0 |
70.0 |
17 |
674.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
242079498 |
rs7555402 |
A |
G |
. |
PASS |
0.4637000 |
0.6499000 |
0.7163000 |
0.4662000 |
0.4847000 |
0.5449000 |
37.0 |
70.0 |
12 |
465.77 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
242121011 |
rs34082719,rs3862973 |
ATAAG |
A |
. |
PASS |
0.3094000 |
0.3213000 |
0.2421000 |
0.3738000 |
0.2751000 |
0.3037000 |
33.43 |
70.0 |
13 |
183.20 |
4.40 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
242121052 |
rs3851305 |
C |
G |
. |
PASS |
0.3094000 |
0.3228000 |
0.2421000 |
0.3757000 |
0.2710000 |
0.3035000 |
36.25 |
70.0 |
26 |
541.44 |
1.92 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
242121061 |
rs3915586 |
C |
T |
. |
PASS |
0.3094000 |
0.3228000 |
0.2421000 |
0.3757000 |
0.2710000 |
0.3035000 |
35.11 |
70.0 |
32 |
628.82 |
2.96 |
59.38 |
0 |
59.38 |
0/1 |
| chr1 |
242121540 |
rs56335758 |
G |
A |
. |
PASS |
0.2844000 |
0.3228000 |
0.2242000 |
0.3777000 |
0.2730000 |
0.2941000 |
36.48 |
69.57 |
96 |
1000.00 |
8.51 |
47.92 |
0 |
47.92 |
0/1 |
| chr1 |
242121796 |
rs3851304 |
G |
T |
. |
PASS |
0.2648000 |
0.3242000 |
0.2331000 |
0.3738000 |
0.2812000 |
0.2917000 |
37.0 |
70.0 |
64 |
647.92 |
4.76 |
32.81 |
0 |
32.81 |
0/1 |
| chr1 |
242156537 |
rs28627534 |
G |
A |
. |
PASS |
0.4992000 |
0.4049000 |
0.3899000 |
0.4980000 |
0.5020000 |
0.4645000 |
37.0 |
70.0 |
11 |
59.73 |
24.24 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
242156949 |
rs28449792 |
C |
T |
. |
PASS |
0.0514000 |
0.1657000 |
0.0714000 |
0.2624000 |
0.2106000 |
0.1448000 |
37.0 |
69.75 |
38 |
354.40 |
11.40 |
31.58 |
0 |
31.58 |
0/1 |
| chr1 |
242383201 |
rs1973498 |
T |
G |
. |
PASS |
0.2920000 |
0.4222000 |
0.5536000 |
0.2823000 |
0.3793000 |
0.3778000 |
37.0 |
70.0 |
13 |
216.64 |
0.00 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
242509589 |
rs6429349 |
C |
A |
. |
PASS |
0.8230000 |
0.9827000 |
0.9643000 |
0.9920000 |
0.9724000 |
0.9367000 |
36.2 |
68.62 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
242511556 |
rs112478548 |
AACAAAG |
A |
. |
PASS |
0.5560000 |
0.7810000 |
0.6915000 |
0.8072000 |
0.7311000 |
0.6991000 |
35.98 |
68.76 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
242540674 |
. |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.0 |
70.0 |
17 |
71.43 |
5.88 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
242546373 |
rs4658481 |
A |
T |
. |
PASS |
0.4115000 |
0.3127000 |
0.6052000 |
0.4901000 |
0.4100000 |
0.4523000 |
36.74 |
70.0 |
103 |
1000.00 |
0.51 |
44.66 |
0 |
44.66 |
0/1 |
| chr1 |
242546534 |
rs893702 |
C |
T |
. |
PASS |
0.8722000 |
0.9409000 |
0.8641000 |
0.9294000 |
0.8047000 |
0.8784000 |
37.0 |
70.0 |
13 |
507.53 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
242859680 |
rs10803073 |
C |
T |
. |
PASS |
0.3177000 |
0.4697000 |
0.4960000 |
0.6352000 |
0.5562000 |
0.4850000 |
36.35 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
243138336 |
rs12131267 |
G |
A |
. |
PASS |
0.0711000 |
0.3790000 |
0.3909000 |
0.2962000 |
0.2669000 |
0.2616000 |
36.29 |
69.0 |
24 |
593.38 |
12.75 |
70.83 |
0 |
70.83 |
0/1 |
| chr1 |
243138354 |
rs12127896 |
A |
G |
. |
PASS |
0.3048000 |
0.5764000 |
0.4603000 |
0.6352000 |
0.6442000 |
0.5064000 |
36.11 |
68.93 |
27 |
984.75 |
0.30 |
92.59 |
0 |
100.00 |
1/1 |
| chr1 |
243138403 |
rs12138844 |
C |
T |
. |
PASS |
0.1059000 |
0.3847000 |
0.3929000 |
0.2962000 |
0.2669000 |
0.2720000 |
36.33 |
67.78 |
30 |
617.09 |
11.11 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
243138492 |
rs151302221 |
GTCTCAATGGATCTAGACCTTCATCGCCCTCTGATCGCCGATCAC |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.4 |
15 |
581.51 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
243138539 |
. |
CTG |
CAT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.57 |
65.57 |
14 |
545.15 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
243138543 |
rs200792404 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.57 |
14 |
549.30 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
243188415 |
rs59017746 |
C |
CA |
. |
PASS |
0.6619000 |
0.4957000 |
0.5893000 |
0.4503000 |
0.6104000 |
0.5717000 |
36.08 |
66.27 |
72 |
767.48 |
22.44 |
34.72 |
0 |
34.72 |
0/1 |
| chr1 |
243322612 |
rs115049897 |
C |
T |
. |
PASS |
0.4788000 |
0.3833000 |
0.5079000 |
0.3917000 |
0.5665000 |
0.4710000 |
35.0 |
59.0 |
51 |
52.65 |
31.37 |
11.76 |
0 |
11.76 |
0/1 |
| chr1 |
243327785 |
rs201167561 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0050000 |
0.0010000 |
0.0011981 |
35.8 |
59.3 |
34 |
270.88 |
28.24 |
29.41 |
0 |
29.41 |
0/1 |
| chr1 |
243329049 |
rs3766664 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
65.3 |
96 |
465.95 |
9.58 |
20.83 |
0 |
20.83 |
0/1 |
| chr1 |
243329075 |
rs61833876 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.59 |
63.53 |
81 |
409.81 |
18.30 |
20.99 |
0 |
20.99 |
0/1 |
| chr1 |
243332884 |
rs140816120 |
AAG |
A |
. |
PASS |
0.1846000 |
0.2608000 |
0.3065000 |
0.3777000 |
0.4908000 |
0.3183000 |
36.6 |
50.73 |
29 |
380.97 |
1.38 |
51.72 |
0 |
51.72 |
0/1 |
| chr1 |
243362331 |
rs2789172 |
C |
T |
. |
PASS |
0.8169000 |
0.8746000 |
0.9425000 |
0.8966000 |
0.8978000 |
0.8820000 |
37.0 |
60.55 |
11 |
424.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
243385144 |
rs72757676 |
A |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0001997 |
37.0 |
70.0 |
18 |
410.44 |
16.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
243419429 |
rs3904682 |
T |
A |
. |
PASS |
0.0635000 |
0.5548000 |
0.7381000 |
0.5209000 |
0.3344000 |
0.4121000 |
37.0 |
70.0 |
28 |
338.57 |
1.30 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
243433654 |
rs2275154 |
A |
G |
. |
PASS |
0.1619000 |
0.2378000 |
0.1944000 |
0.3439000 |
0.5276000 |
0.2869000 |
37.0 |
70.0 |
31 |
166.62 |
51.61 |
22.58 |
0 |
22.58 |
0/1 |
| chr1 |
243434558 |
rs2130597 |
A |
T |
. |
PASS |
0.8926000 |
0.9885000 |
0.9921000 |
0.9970000 |
0.9928000 |
0.9665000 |
37.0 |
70.0 |
10 |
378.08 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
243493907 |
rs2275155 |
A |
T |
. |
PASS |
0.1702000 |
0.2147000 |
0.1935000 |
0.3231000 |
0.4755000 |
0.2714000 |
36.17 |
70.0 |
65 |
955.06 |
6.47 |
44.62 |
0 |
44.62 |
0/1 |
| chr1 |
243507680 |
rs3215963 |
C |
CA |
. |
PASS |
0.2791000 |
0.1945000 |
0.0278000 |
0.3131000 |
0.3517000 |
0.2378000 |
37.0 |
70.0 |
39 |
753.50 |
11.19 |
56.41 |
0 |
56.41 |
0/1 |
| chr1 |
243579112 |
rs10927011 |
G |
A |
. |
PASS |
0.0938000 |
0.5403000 |
0.7847000 |
0.4980000 |
0.4192000 |
0.4395000 |
36.57 |
69.29 |
60 |
944.49 |
3.33 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
243864967 |
rs67319115,rs74162707 |
C |
CAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
70.0 |
14 |
411.04 |
47.62 |
21.43 |
0 |
85.71 |
0/1 |
| chr1 |
243864967 |
rs67319115,rs74162707 |
C |
CA |
. |
PASS |
0.4970000 |
0.5778000 |
0.4742000 |
0.5835000 |
0.4888000 |
0.5194000 |
35.5 |
70.0 |
14 |
411.04 |
28.57 |
50.00 |
0 |
85.71 |
0/1 |
| chr1 |
244213736 |
rs5782283,rs60118813 |
A |
ACC |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.71 |
70.0 |
58 |
1000.00 |
8.28 |
25.86 |
0 |
94.83 |
0/1 |
| chr1 |
244213736 |
rs5782283,rs60118813 |
A |
AC |
. |
PASS |
0.5325000 |
0.5231000 |
0.5417000 |
0.5199000 |
0.5644000 |
0.5367000 |
35.22 |
70.0 |
58 |
1000.00 |
1.72 |
68.97 |
0 |
94.83 |
0/1 |
| chr1 |
244601152 |
rs3127465 |
C |
T |
. |
PASS |
0.9455000 |
0.8545000 |
0.7718000 |
0.8320000 |
0.6718000 |
0.8217000 |
34.43 |
70.0 |
26 |
438.03 |
2.20 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
244624887 |
rs3124058 |
T |
C |
. |
PASS |
0.6914000 |
0.6153000 |
0.7361000 |
0.6352000 |
0.4601000 |
0.6334000 |
37.0 |
70.0 |
20 |
492.11 |
2.86 |
70.00 |
0 |
70.00 |
0/1 |
| chr1 |
244723920 |
rs7522899 |
C |
G |
. |
PASS |
0.4334000 |
0.2464000 |
0.3760000 |
0.0775000 |
0.1728000 |
0.2736000 |
37.0 |
70.0 |
34 |
111.66 |
0.00 |
17.65 |
0 |
17.65 |
0/1 |
| chr1 |
244724092 |
rs7544794 |
G |
A |
. |
PASS |
0.4334000 |
0.2435000 |
0.3760000 |
0.0775000 |
0.1728000 |
0.2732000 |
37.0 |
70.0 |
112 |
1000.00 |
10.25 |
41.07 |
0 |
41.07 |
0/1 |
| chr1 |
244735858 |
rs10927267 |
A |
G |
. |
PASS |
0.4289000 |
0.2464000 |
0.3730000 |
0.0785000 |
0.1728000 |
0.2720000 |
37.0 |
70.0 |
72 |
1000.00 |
3.23 |
43.06 |
0 |
43.06 |
0/1 |
| chr1 |
244747150 |
rs6429487 |
G |
A |
. |
PASS |
0.3797000 |
0.2378000 |
0.3720000 |
0.0755000 |
0.1697000 |
0.2564000 |
37.0 |
70.0 |
25 |
435.30 |
4.31 |
52.00 |
0 |
52.00 |
0/1 |
| chr1 |
244747292 |
. |
GCG |
GTA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
70.0 |
19 |
289.28 |
4.68 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
244754961 |
rs41269387 |
C |
A |
. |
PASS |
0.0431000 |
0.2104000 |
0.3710000 |
0.0736000 |
0.1524000 |
0.1597000 |
37.0 |
70.0 |
25 |
264.06 |
16.89 |
36.00 |
0 |
36.00 |
0/1 |
| chr1 |
244803205 |
rs10572994 |
CT |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.12 |
70.0 |
18 |
574.71 |
6.54 |
94.44 |
0 |
94.44 |
1/1 |
| chr1 |
244891672 |
rs7540522 |
A |
T |
. |
PASS |
0.3548000 |
0.6974000 |
0.5387000 |
0.5974000 |
0.5900000 |
0.5339000 |
36.34 |
70.0 |
127 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
245005373 |
rs10927335 |
A |
G |
. |
PASS |
0.4455000 |
0.1412000 |
0.0119000 |
0.2058000 |
0.1483000 |
0.2099000 |
36.2 |
70.0 |
32 |
485.76 |
7.50 |
46.88 |
0 |
46.88 |
0/1 |
| chr1 |
245005492 |
rs150123625 |
T |
TG |
. |
PASS |
0.1536000 |
0.1009000 |
0.0109000 |
0.1740000 |
0.1288000 |
0.1168000 |
36.37 |
70.0 |
36 |
625.21 |
10.82 |
52.78 |
0 |
52.78 |
0/1 |
| chr1 |
245006492 |
rs59190751,rs199795132 |
T |
TAGAAA |
. |
PASS |
0.2126000 |
0.0490000 |
0.0030000 |
0.0835000 |
0.0245000 |
0.0851000 |
36.29 |
68.71 |
31 |
135.03 |
4.61 |
22.58 |
0 |
22.58 |
0/1 |
| chr1 |
245018456 |
rs113724064,rs59942516 |
TAGCA |
T |
. |
PASS |
0.4402000 |
0.1282000 |
0.0149000 |
0.1928000 |
0.1452000 |
0.2041000 |
35.14 |
70.0 |
13 |
198.22 |
8.79 |
53.85 |
0 |
53.85 |
0/1 |
| chr1 |
245018624 |
rs10927336 |
C |
A |
. |
PASS |
0.1490000 |
0.0865000 |
0.0139000 |
0.1610000 |
0.1247000 |
0.1108000 |
35.29 |
70.0 |
11 |
210.66 |
7.79 |
63.64 |
0 |
63.64 |
0/1 |
| chr1 |
245021132 |
rs9730334 |
C |
G |
. |
PASS |
0.4213000 |
0.1268000 |
0.0149000 |
0.1928000 |
0.1452000 |
0.1989000 |
33.0 |
70.0 |
13 |
150.85 |
2.56 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
245025692 |
rs12124462 |
A |
T |
. |
PASS |
0.4206000 |
0.1398000 |
0.0159000 |
0.2028000 |
0.1493000 |
0.2035000 |
35.0 |
70.0 |
14 |
159.86 |
9.52 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
245025697 |
. |
T |
TAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.33 |
70.0 |
16 |
617.25 |
30.00 |
31.25 |
0 |
100.00 |
0/1 |
| chr1 |
245025697 |
. |
T |
TAAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
16 |
617.25 |
16.67 |
37.50 |
0 |
100.00 |
0/1 |
| chr1 |
245133662 |
rs61844237 |
G |
C |
. |
PASS |
0.0144000 |
0.3501000 |
0.5903000 |
0.4712000 |
0.5399000 |
0.3712000 |
37.0 |
68.33 |
12 |
461.62 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
245222634 |
rs694793 |
C |
G |
. |
PASS |
0.7950000 |
0.9496000 |
0.8532000 |
0.9980000 |
0.8804000 |
0.8856000 |
35.29 |
70.0 |
14 |
521.13 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
245222839 |
rs579269 |
G |
T |
. |
PASS |
0.9070000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9752000 |
35.8 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
245312295 |
rs4658439 |
G |
A |
. |
PASS |
0.6362000 |
0.5418000 |
0.4157000 |
0.4712000 |
0.3425000 |
0.4882000 |
35.83 |
70.0 |
81 |
1000.00 |
8.49 |
50.62 |
0 |
50.62 |
0/1 |
| chr1 |
245318688 |
rs12409851 |
C |
T |
. |
PASS |
0.2148000 |
0.3718000 |
0.5823000 |
0.3499000 |
0.5624000 |
0.4056000 |
37.0 |
70.0 |
17 |
334.07 |
18.82 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
245703990 |
rs9919234 |
G |
T |
. |
PASS |
0.6846000 |
0.5476000 |
0.6448000 |
0.5775000 |
0.6288000 |
0.6252000 |
37.0 |
70.0 |
10 |
100.36 |
20.00 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
245847455 |
rs72764846 |
G |
A |
. |
PASS |
0.0348000 |
0.0922000 |
0.0218000 |
0.1928000 |
0.0389000 |
0.0727000 |
35.91 |
70.0 |
23 |
345.76 |
3.16 |
47.83 |
0 |
47.83 |
0/1 |
| chr1 |
245849000 |
rs61744485 |
C |
T |
. |
PASS |
0.0719000 |
0.0965000 |
0.0208000 |
0.1889000 |
0.0378000 |
0.0819000 |
36.44 |
70.0 |
79 |
1000.00 |
3.59 |
54.43 |
0 |
54.43 |
0/1 |
| chr1 |
245849444 |
rs201841118 |
C |
T |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0040000 |
0.0051000 |
0.0017971 |
37.0 |
70.0 |
51 |
1000.00 |
12.16 |
58.82 |
0 |
58.82 |
0/1 |
| chr1 |
245850506 |
rs3806273 |
G |
C |
. |
PASS |
0.1074000 |
0.1513000 |
0.1052000 |
0.0159000 |
0.0348000 |
0.0805000 |
37.0 |
70.0 |
55 |
925.65 |
5.66 |
49.09 |
0 |
49.09 |
0/1 |
| chr1 |
245850513 |
rs113972282 |
C |
G |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0040000 |
0.0051000 |
0.0017971 |
35.62 |
70.0 |
53 |
853.86 |
5.95 |
49.06 |
0 |
49.06 |
0/1 |
| chr1 |
245851304 |
rs6701084 |
A |
G |
. |
PASS |
0.9985000 |
0.9784000 |
1.0000000 |
0.9722000 |
0.9939000 |
0.9898000 |
36.62 |
70.0 |
96 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
245861376 |
rs72764865 |
G |
A |
. |
PASS |
0.0000000 |
0.0000000 |
0.0000000 |
0.0040000 |
0.0041000 |
0.0015974 |
34.33 |
70.0 |
35 |
214.09 |
7.62 |
25.71 |
0 |
25.71 |
0/1 |
| chr1 |
245861571 |
rs3205034 |
C |
T |
. |
PASS |
0.3298000 |
0.4481000 |
0.3780000 |
0.5537000 |
0.3272000 |
0.4004000 |
36.37 |
69.85 |
133 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246021941 |
rs2362587 |
T |
C |
. |
PASS |
0.2224000 |
0.5173000 |
0.1925000 |
0.7177000 |
0.3896000 |
0.3894000 |
36.57 |
70.0 |
67 |
923.42 |
4.48 |
41.79 |
0 |
41.79 |
0/1 |
| chr1 |
246022071 |
rs2185370 |
C |
T |
. |
PASS |
0.2042000 |
0.5130000 |
0.1925000 |
0.7207000 |
0.3896000 |
0.3846000 |
37.0 |
70.0 |
13 |
137.25 |
6.15 |
38.46 |
0 |
38.46 |
0/1 |
| chr1 |
246027024 |
rs12123124 |
A |
G |
. |
PASS |
0.2231000 |
0.5187000 |
0.1925000 |
0.7217000 |
0.3885000 |
0.3904000 |
37.0 |
70.0 |
36 |
151.56 |
15.08 |
19.44 |
0 |
19.44 |
0/1 |
| chr1 |
246027029 |
rs61830203 |
A |
T |
. |
PASS |
0.2231000 |
0.5187000 |
0.1925000 |
0.7217000 |
0.3885000 |
0.3904000 |
37.0 |
70.0 |
40 |
218.91 |
8.33 |
22.50 |
0 |
22.50 |
0/1 |
| chr1 |
246027034 |
rs2153404 |
G |
C |
. |
PASS |
0.9660000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9906000 |
36.72 |
69.53 |
43 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246091115 |
rs2275313 |
C |
G |
. |
PASS |
0.6929000 |
0.8473000 |
0.4831000 |
0.8847000 |
0.7873000 |
0.7290000 |
36.25 |
70.0 |
16 |
616.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246548625 |
rs61841323 |
T |
A |
. |
PASS |
0.3094000 |
0.5115000 |
0.3978000 |
0.4423000 |
0.4387000 |
0.4071000 |
37.0 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246670281 |
rs6671418 |
G |
C |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.25 |
69.38 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246670333 |
rs6426303 |
A |
G |
. |
PASS |
0.9584000 |
0.9769000 |
1.0000000 |
0.9891000 |
0.9990000 |
0.9834000 |
36.15 |
69.72 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246670481 |
rs7520453 |
C |
G |
. |
PASS |
0.4720000 |
0.8329000 |
0.9028000 |
0.8618000 |
0.7873000 |
0.7486000 |
36.6 |
69.83 |
120 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246670626 |
rs3841811,rs58962570 |
A |
AGGGGC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.77 |
70.0 |
14 |
517.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246674323 |
rs12405201 |
C |
T |
. |
PASS |
0.1634000 |
0.2867000 |
0.2272000 |
0.4573000 |
0.2014000 |
0.2598000 |
37.0 |
70.0 |
10 |
146.28 |
0.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
246711816 |
rs5782396 |
GA |
G |
. |
PASS |
0.1415000 |
0.3818000 |
0.3403000 |
0.4672000 |
0.4039000 |
0.3315000 |
36.18 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246712033 |
rs1890160 |
A |
G |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246714426 |
rs12140400 |
A |
G |
. |
PASS |
0.0522000 |
0.2867000 |
0.1230000 |
0.2406000 |
0.1820000 |
0.1621000 |
37.0 |
68.0 |
27 |
303.97 |
13.33 |
37.04 |
0 |
37.04 |
0/1 |
| chr1 |
246714587 |
rs10754526 |
G |
A |
. |
PASS |
0.4312000 |
0.4063000 |
0.3423000 |
0.4702000 |
0.4049000 |
0.4125000 |
36.59 |
69.31 |
29 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246714630 |
rs35073704 |
ATG |
AAA |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.8 |
70.0 |
10 |
437.59 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246714636 |
rs34850511 |
T |
A |
. |
PASS |
0.4244000 |
0.4049000 |
0.3413000 |
0.4702000 |
0.4049000 |
0.4103000 |
36.14 |
68.57 |
14 |
533.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246720798 |
rs3124071 |
G |
A |
. |
PASS |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
36.42 |
69.48 |
62 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246727558 |
rs3120713 |
G |
T |
. |
PASS |
0.9720000 |
0.9971000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9922000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246754778 |
rs35302997 |
G |
GA |
. |
PASS |
0.4092000 |
0.3559000 |
0.6855000 |
0.2724000 |
0.5665000 |
0.4607000 |
35.29 |
70.0 |
13 |
151.43 |
20.51 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
246755124 |
rs6702823 |
T |
C |
. |
PASS |
0.7950000 |
0.9236000 |
0.8919000 |
0.9056000 |
0.9427000 |
0.8834000 |
37.0 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246797974 |
rs6680646 |
T |
A |
. |
PASS |
0.2156000 |
0.3401000 |
0.6944000 |
0.2744000 |
0.5491000 |
0.4062000 |
34.0 |
70.0 |
12 |
237.41 |
16.67 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
246805434 |
. |
GG |
GTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
. |
. |
14 |
109.63 |
28.57 |
14.29 |
1 |
78.57 |
0/1 |
| chr1 |
246805435 |
rs12748305 |
G |
T |
. |
PASS |
0.7579000 |
0.4813000 |
0.7024000 |
0.4175000 |
0.6442000 |
0.6178000 |
35.67 |
67.78 |
13 |
288.17 |
34.19 |
69.23 |
1 |
69.23 |
0/1 |
| chr1 |
246903654 |
rs3007322 |
G |
C |
. |
PASS |
0.0227000 |
0.3314000 |
0.2312000 |
0.4016000 |
0.4223000 |
0.2616000 |
36.6 |
70.0 |
30 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
246929483 |
rs12144408 |
A |
G |
. |
PASS |
0.1067000 |
0.3401000 |
0.2302000 |
0.4225000 |
0.4673000 |
0.2977000 |
36.37 |
70.0 |
19 |
746.14 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247005862 |
rs12401831 |
T |
C |
. |
PASS |
0.2201000 |
0.3357000 |
0.1706000 |
0.2197000 |
0.1677000 |
0.2159000 |
37.0 |
70.0 |
19 |
411.58 |
0.00 |
63.16 |
0 |
63.16 |
0/1 |
| chr1 |
247006051 |
rs12410563 |
G |
C |
. |
PASS |
0.2201000 |
0.3357000 |
0.1706000 |
0.2197000 |
0.1656000 |
0.2155000 |
36.71 |
69.9 |
75 |
1000.00 |
2.47 |
54.67 |
0 |
54.67 |
0/1 |
| chr1 |
247006160 |
rs5021094 |
G |
T |
. |
PASS |
0.9803000 |
0.7176000 |
0.5923000 |
0.5447000 |
0.5389000 |
0.6921000 |
36.25 |
70.0 |
16 |
616.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247007013 |
rs151137571 |
TAAATA |
T |
. |
PASS |
0.1331000 |
0.2853000 |
0.3948000 |
0.2326000 |
0.2393000 |
0.2476000 |
37.0 |
70.0 |
18 |
234.94 |
22.22 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
247007042 |
. |
TAA |
TA |
. |
PASS |
0.6135000 |
0.6066000 |
0.8016000 |
0.7346000 |
0.7986000 |
0.7109000 |
. |
. |
28 |
496.66 |
11.90 |
42.86 |
1 |
100.00 |
0/1 |
| chr1 |
247007042 |
. |
TAA |
TTT |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
70.0 |
28 |
496.66 |
4.76 |
53.57 |
1 |
100.00 |
0/1 |
| chr1 |
247007043 |
rs4971284 |
A |
T |
. |
PASS |
0.0779000 |
0.3300000 |
0.1925000 |
0.2187000 |
0.1646000 |
0.1811000 |
36.56 |
70.0 |
27 |
955.86 |
0.00 |
55.56 |
1 |
100.00 |
0/1 |
| chr1 |
247007044 |
rs4971285 |
A |
T |
. |
PASS |
0.0779000 |
0.3300000 |
0.1925000 |
0.2187000 |
0.1646000 |
0.1811000 |
35.88 |
70.0 |
28 |
496.66 |
4.76 |
53.57 |
1 |
57.14 |
0/1 |
| chr1 |
247021138 |
rs41310593 |
A |
T |
. |
PASS |
0.0061000 |
0.0490000 |
0.0010000 |
0.0606000 |
0.0102000 |
0.0228000 |
35.5 |
70.0 |
39 |
812.45 |
0.00 |
61.54 |
0 |
61.54 |
0/1 |
| chr1 |
247025207 |
rs61853995 |
G |
A |
. |
PASS |
0.0764000 |
0.3271000 |
0.1905000 |
0.2167000 |
0.1595000 |
0.1785000 |
37.0 |
70.0 |
12 |
140.26 |
16.67 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
247039256 |
rs12748665 |
A |
C |
. |
PASS |
0.2163000 |
0.2882000 |
0.3313000 |
0.2256000 |
0.2014000 |
0.2484000 |
37.0 |
70.0 |
15 |
335.93 |
0.00 |
66.67 |
0 |
66.67 |
0/1 |
| chr1 |
247048834 |
rs2642990 |
T |
C |
. |
PASS |
0.9803000 |
0.6311000 |
0.6220000 |
0.5159000 |
0.5460000 |
0.6817000 |
36.14 |
69.5 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247061466 |
rs12023594 |
C |
T |
. |
PASS |
0.0870000 |
0.2666000 |
0.1935000 |
0.2117000 |
0.1585000 |
0.1723000 |
37.0 |
70.0 |
40 |
557.23 |
12.35 |
42.50 |
0 |
42.50 |
0/1 |
| chr1 |
247068785 |
rs7551797 |
C |
T |
. |
PASS |
0.2201000 |
0.2738000 |
0.1944000 |
0.2127000 |
0.1595000 |
0.2091000 |
37.0 |
70.0 |
35 |
446.97 |
5.71 |
40.00 |
0 |
40.00 |
0/1 |
| chr1 |
247094670 |
rs138217683 |
C |
T |
. |
PASS |
0.0666000 |
0.0173000 |
0.0833000 |
0.0209000 |
0.0194000 |
0.0447000 |
36.0 |
68.04 |
62 |
759.38 |
15.86 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
247109014 |
rs2642982 |
G |
C |
. |
PASS |
0.4750000 |
0.5937000 |
0.5546000 |
0.5249000 |
0.3804000 |
0.4990000 |
36.74 |
69.57 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247109168 |
rs6426191 |
G |
A |
. |
PASS |
0.3238000 |
0.3977000 |
0.3284000 |
0.3817000 |
0.2065000 |
0.3237000 |
37.0 |
70.0 |
18 |
163.97 |
11.11 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
247111062 |
rs1779962 |
T |
C |
. |
PASS |
0.6679000 |
0.6138000 |
0.5556000 |
0.5398000 |
0.3967000 |
0.5591000 |
36.8 |
70.0 |
59 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247151487 |
rs55762230 |
C |
T |
. |
PASS |
0.0371000 |
0.0159000 |
0.0000000 |
0.0209000 |
0.0041000 |
0.0169730 |
36.66 |
70.0 |
89 |
1000.00 |
8.86 |
39.33 |
0 |
39.33 |
0/1 |
| chr1 |
247162628 |
rs4384270 |
C |
T |
. |
PASS |
0.3381000 |
0.0548000 |
0.0169000 |
0.0586000 |
0.1493000 |
0.1412000 |
37.0 |
70.0 |
58 |
711.90 |
13.48 |
37.93 |
0 |
37.93 |
0/1 |
| chr1 |
247162658 |
rs2642973 |
C |
T |
. |
PASS |
0.8268000 |
0.9265000 |
0.9742000 |
0.8330000 |
0.6196000 |
0.8311000 |
36.76 |
70.0 |
98 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247163187 |
rs2818870 |
T |
C |
. |
PASS |
0.7837000 |
0.9251000 |
0.9742000 |
0.8340000 |
0.6207000 |
0.8199000 |
35.88 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247201591 |
rs61748726 |
T |
C |
. |
PASS |
0.0030000 |
0.0101000 |
0.0000000 |
0.0209000 |
0.0051000 |
0.0073882 |
36.68 |
70.0 |
88 |
1000.00 |
15.79 |
42.05 |
0 |
42.05 |
0/1 |
| chr1 |
247202032 |
rs10924897 |
G |
T |
. |
PASS |
0.5030000 |
0.2118000 |
0.0109000 |
0.3121000 |
0.2628000 |
0.2784000 |
36.56 |
70.0 |
27 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247206375 |
rs2172795 |
G |
A |
. |
PASS |
0.8404000 |
0.3573000 |
0.1379000 |
0.4970000 |
0.5266000 |
0.5018000 |
36.02 |
69.92 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247241795 |
rs41310571 |
C |
A |
. |
PASS |
0.4009000 |
0.1744000 |
0.0020000 |
0.2078000 |
0.0859000 |
0.1889000 |
36.33 |
70.0 |
18 |
700.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247241850 |
rs41305955 |
G |
C |
. |
PASS |
0.5764000 |
0.1787000 |
0.1280000 |
0.2147000 |
0.3129000 |
0.3069000 |
37.0 |
70.0 |
50 |
940.68 |
3.11 |
54.00 |
0 |
54.00 |
0/1 |
| chr1 |
247347252 |
rs28408877 |
C |
G |
. |
PASS |
0.0779000 |
0.1931000 |
0.1954000 |
0.2694000 |
0.1472000 |
0.1695000 |
36.4 |
70.0 |
20 |
783.76 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247393655 |
rs6693807 |
T |
C |
. |
PASS |
0.2905000 |
0.2262000 |
0.2966000 |
0.2833000 |
0.3579000 |
0.2945000 |
37.0 |
69.0 |
25 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247420421 |
rs41308154 |
C |
T |
. |
PASS |
0.0673000 |
0.1700000 |
0.4058000 |
0.2406000 |
0.2740000 |
0.2248000 |
36.04 |
70.0 |
60 |
807.17 |
6.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
247471121 |
rs12023326 |
T |
C |
. |
PASS |
0.0325000 |
0.1859000 |
0.4137000 |
0.2724000 |
0.3139000 |
0.2336000 |
36.33 |
70.0 |
36 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247486421 |
rs6692645 |
G |
C |
. |
PASS |
0.3880000 |
0.4409000 |
0.4802000 |
0.6630000 |
0.5613000 |
0.5030000 |
36.59 |
70.0 |
58 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247494162 |
rs4925621 |
G |
A |
. |
PASS |
0.3843000 |
0.4337000 |
0.4405000 |
0.6660000 |
0.5082000 |
0.4832000 |
36.72 |
69.54 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247587477 |
rs3806268 |
G |
A |
. |
PASS |
0.0348000 |
0.3617000 |
0.5437000 |
0.5487000 |
0.5552000 |
0.3874000 |
36.2 |
70.0 |
90 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247587531 |
rs4925543 |
A |
G |
. |
PASS |
0.8434000 |
0.9510000 |
0.9980000 |
0.9592000 |
0.8804000 |
0.9199000 |
36.36 |
70.0 |
75 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247597365 |
rs10925022 |
G |
A |
. |
PASS |
0.7481000 |
0.8127000 |
0.8492000 |
0.8161000 |
0.7362000 |
0.7887000 |
36.14 |
70.0 |
14 |
537.29 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247597656 |
rs3835304 |
TG |
T |
. |
PASS |
0.2579000 |
0.4207000 |
0.5248000 |
0.6491000 |
0.5828000 |
0.4762000 |
36.76 |
70.0 |
25 |
993.21 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247599232 |
rs10754557 |
G |
A |
. |
PASS |
0.1747000 |
0.4611000 |
0.6617000 |
0.6183000 |
0.5971000 |
0.4840000 |
37.0 |
70.0 |
28 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247614693 |
rs6695302 |
C |
T |
. |
PASS |
0.6203000 |
0.9741000 |
1.0000000 |
0.9980000 |
0.9990000 |
0.8956000 |
36.8 |
70.0 |
118 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247614896 |
rs11583410 |
A |
C |
. |
PASS |
0.1165000 |
0.3401000 |
0.4474000 |
0.4742000 |
0.5450000 |
0.3696000 |
36.65 |
70.0 |
103 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247615340 |
rs55889481 |
C |
T |
. |
PASS |
0.3782000 |
0.1888000 |
0.0099000 |
0.1133000 |
0.0450000 |
0.1595000 |
37.0 |
70.0 |
27 |
53.34 |
1.85 |
14.81 |
0 |
14.81 |
0/1 |
| chr1 |
247654498 |
rs61070846 |
G |
A |
. |
PASS |
0.1483000 |
0.2176000 |
0.0288000 |
0.1909000 |
0.0808000 |
0.1292000 |
35.78 |
70.0 |
92 |
1000.00 |
7.76 |
53.26 |
0 |
53.26 |
0/1 |
| chr1 |
247695427 |
rs34220133 |
C |
G |
. |
PASS |
0.0333000 |
0.0504000 |
0.0020000 |
0.1372000 |
0.1299000 |
0.0691000 |
37.0 |
70.0 |
103 |
1000.00 |
2.73 |
50.49 |
0 |
50.49 |
0/1 |
| chr1 |
247695612 |
rs6657127 |
G |
A |
. |
PASS |
0.9947000 |
0.9986000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9984000 |
36.51 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247695756 |
rs6697472 |
T |
C |
. |
PASS |
0.9198000 |
0.9885000 |
1.0000000 |
0.9990000 |
1.0000000 |
0.9770000 |
36.31 |
70.0 |
87 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247726822 |
rs142922665 |
CTTTT |
C |
. |
PASS |
0.2965000 |
0.3746000 |
0.1617000 |
0.5159000 |
0.3834000 |
0.3413000 |
36.14 |
70.0 |
24 |
413.74 |
21.43 |
58.33 |
0 |
58.33 |
0/1 |
| chr1 |
247751731 |
rs12737801 |
C |
G |
. |
PASS |
0.0673000 |
0.0865000 |
0.0050000 |
0.1223000 |
0.1074000 |
0.0763000 |
36.51 |
70.0 |
95 |
1000.00 |
1.12 |
51.58 |
0 |
51.58 |
0/1 |
| chr1 |
247752019 |
rs1151687 |
G |
C |
. |
PASS |
0.1641000 |
0.6686000 |
0.7599000 |
0.7147000 |
0.7526000 |
0.5795000 |
36.54 |
70.0 |
79 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247752161 |
rs10925085 |
T |
C |
. |
PASS |
0.0582000 |
0.3501000 |
0.5228000 |
0.4125000 |
0.2843000 |
0.3075000 |
37.0 |
70.0 |
54 |
1000.00 |
2.94 |
53.70 |
0 |
53.70 |
0/1 |
| chr1 |
247752367 |
rs869111 |
A |
G |
. |
PASS |
0.3116000 |
0.3444000 |
0.4444000 |
0.5159000 |
0.3364000 |
0.3888000 |
36.62 |
70.0 |
65 |
1000.00 |
4.52 |
49.23 |
0 |
49.23 |
0/1 |
| chr1 |
247769592 |
rs1151683 |
C |
T |
. |
PASS |
0.3048000 |
0.3689000 |
0.3413000 |
0.2217000 |
0.3333000 |
0.3099000 |
36.2 |
70.0 |
72 |
979.91 |
0.00 |
41.67 |
0 |
41.67 |
0/1 |
| chr1 |
247835674 |
rs28446289 |
G |
A |
. |
PASS |
0.2958000 |
0.2392000 |
0.3839000 |
0.3519000 |
0.3671000 |
0.3309000 |
37.0 |
70.0 |
56 |
1000.00 |
7.49 |
55.36 |
0 |
55.36 |
0/1 |
| chr1 |
247835908 |
rs28556931 |
T |
A |
. |
PASS |
0.2995000 |
0.2392000 |
0.3760000 |
0.3519000 |
0.3671000 |
0.3303000 |
37.0 |
70.0 |
44 |
749.89 |
13.64 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
247835950 |
rs1151640 |
T |
C |
. |
PASS |
0.1286000 |
0.5937000 |
0.6032000 |
0.4195000 |
0.4305000 |
0.4060000 |
36.48 |
70.0 |
50 |
765.75 |
1.04 |
46.00 |
0 |
46.00 |
0/1 |
| chr1 |
247836008 |
rs28555391 |
G |
A |
. |
PASS |
0.2965000 |
0.2392000 |
0.3760000 |
0.3519000 |
0.3661000 |
0.3293000 |
36.6 |
70.0 |
48 |
1000.00 |
2.50 |
62.50 |
0 |
62.50 |
0/1 |
| chr1 |
247836207 |
rs28711149 |
T |
A |
. |
PASS |
0.2965000 |
0.2392000 |
0.3760000 |
0.3519000 |
0.3671000 |
0.3295000 |
37.0 |
70.0 |
93 |
1000.00 |
2.28 |
54.84 |
0 |
54.84 |
0/1 |
| chr1 |
247875608 |
rs6587382 |
C |
G |
. |
PASS |
0.6067000 |
0.2118000 |
0.2232000 |
0.2316000 |
0.2321000 |
0.3263000 |
36.16 |
70.0 |
83 |
1000.00 |
3.70 |
51.81 |
0 |
51.81 |
0/1 |
| chr1 |
247886949 |
rs36075193 |
T |
C |
. |
PASS |
0.0053000 |
0.0476000 |
0.0010000 |
0.1272000 |
0.0204000 |
0.0377000 |
36.22 |
70.0 |
81 |
1000.00 |
2.52 |
56.79 |
0 |
56.79 |
0/1 |
| chr1 |
247921100 |
rs1552812 |
T |
G |
. |
PASS |
0.4523000 |
0.8775000 |
0.7659000 |
0.9115000 |
0.7894000 |
0.7324000 |
36.8 |
70.0 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247921352 |
rs1552813 |
C |
T |
. |
PASS |
0.5825000 |
0.9236000 |
0.9851000 |
0.9573000 |
0.8793000 |
0.8440000 |
37.0 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247921717 |
rs10888359 |
C |
A |
. |
PASS |
0.5862000 |
0.9236000 |
0.9851000 |
0.9592000 |
0.8804000 |
0.8456000 |
36.73 |
70.0 |
45 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247921789 |
rs147960387 |
A |
AGT |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
70.0 |
10 |
250.01 |
10.00 |
80.00 |
0 |
80.00 |
0/1 |
| chr1 |
247978079 |
rs72777548 |
T |
A |
. |
PASS |
0.2027000 |
0.0764000 |
0.0000000 |
0.0805000 |
0.0123000 |
0.0827000 |
37.0 |
70.0 |
21 |
401.41 |
4.76 |
57.14 |
0 |
57.14 |
0/1 |
| chr1 |
247978087 |
rs10888248 |
G |
A |
. |
PASS |
0.5000000 |
0.8977000 |
1.0000000 |
0.9165000 |
0.9847000 |
0.8341000 |
37.0 |
70.0 |
26 |
390.51 |
0.00 |
46.15 |
0 |
46.15 |
0/1 |
| chr1 |
247978319 |
rs6695283 |
A |
G |
. |
PASS |
0.9955000 |
1.0000000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9988000 |
36.64 |
70.0 |
67 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
247978541 |
rs375198428,rs35979231 |
AAGG |
A |
. |
PASS |
0.2163000 |
0.8184000 |
0.9851000 |
0.8797000 |
0.8967000 |
0.7206000 |
36.85 |
70.0 |
88 |
1000.00 |
0.83 |
46.59 |
0 |
46.59 |
0/1 |
| chr1 |
247978996 |
rs10888249 |
A |
G |
. |
PASS |
0.5424000 |
0.9035000 |
1.0000000 |
0.9175000 |
0.9877000 |
0.8468000 |
37.0 |
70.0 |
73 |
1000.00 |
9.07 |
61.64 |
0 |
64.38 |
0/1 |
| chr1 |
248004296 |
rs6681483 |
A |
G |
. |
PASS |
0.3616000 |
0.1282000 |
0.0040000 |
0.1014000 |
0.0746000 |
0.1490000 |
36.27 |
70.0 |
60 |
1000.00 |
6.97 |
55.00 |
0 |
55.00 |
0/1 |
| chr1 |
248004614 |
rs6667389 |
G |
A |
. |
PASS |
0.6233000 |
0.8703000 |
0.9960000 |
0.8986000 |
0.9254000 |
0.8468000 |
37.0 |
70.0 |
49 |
530.14 |
20.17 |
34.69 |
0 |
34.69 |
0/1 |
| chr1 |
248004687 |
rs10888255 |
C |
G |
. |
PASS |
0.7103000 |
0.8732000 |
0.9960000 |
0.8986000 |
0.9264000 |
0.8704000 |
37.0 |
70.0 |
69 |
1000.00 |
6.76 |
52.17 |
0 |
52.17 |
0/1 |
| chr1 |
248004775 |
rs10888256 |
C |
T |
. |
PASS |
0.7829000 |
0.8804000 |
0.9960000 |
0.8986000 |
0.9264000 |
0.8906000 |
37.0 |
70.0 |
51 |
1000.00 |
4.46 |
56.86 |
0 |
56.86 |
0/1 |
| chr1 |
248004848 |
rs4607924 |
G |
C |
. |
PASS |
0.7821000 |
0.8804000 |
0.9960000 |
0.8986000 |
0.9264000 |
0.8904000 |
36.5 |
70.0 |
49 |
806.37 |
6.29 |
48.98 |
0 |
48.98 |
0/1 |
| chr1 |
248004877 |
rs10888257 |
C |
T |
. |
PASS |
0.7126000 |
0.8732000 |
0.9960000 |
0.8986000 |
0.9264000 |
0.8710000 |
36.59 |
70.0 |
58 |
992.29 |
10.34 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
248004884 |
rs1339845 |
T |
C |
. |
PASS |
0.8926000 |
0.9510000 |
1.0000000 |
0.9592000 |
0.9980000 |
0.9563000 |
36.6 |
70.0 |
60 |
1000.00 |
10.00 |
50.00 |
0 |
50.00 |
0/1 |
| chr1 |
248005213 |
rs7522811 |
G |
C |
. |
PASS |
0.6218000 |
0.8573000 |
0.9960000 |
0.8986000 |
0.9264000 |
0.8448000 |
37.0 |
70.0 |
72 |
707.38 |
7.85 |
31.94 |
0 |
31.94 |
0/1 |
| chr1 |
248020448 |
rs10749636 |
G |
A |
. |
PASS |
0.3381000 |
0.7133000 |
0.7738000 |
0.7694000 |
0.8006000 |
0.6548000 |
37.0 |
70.0 |
16 |
632.84 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248020526 |
rs142390236 |
C |
A |
. |
PASS |
0.0204000 |
0.0389000 |
0.0000000 |
0.0447000 |
0.0020000 |
0.0202000 |
36.5 |
70.0 |
56 |
785.30 |
3.57 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
248020556 |
rs11204523 |
G |
C |
. |
PASS |
0.4168000 |
0.7262000 |
0.7897000 |
0.7614000 |
0.8067000 |
0.6801000 |
36.83 |
70.0 |
72 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248028219 |
rs946696 |
G |
A |
. |
PASS |
0.0499000 |
0.4409000 |
0.5744000 |
0.5716000 |
0.5685000 |
0.4157000 |
36.08 |
70.0 |
86 |
1000.00 |
7.27 |
45.35 |
0 |
45.35 |
0/1 |
| chr1 |
248039294 |
rs1339847 |
G |
A |
. |
PASS |
0.0787000 |
0.2046000 |
0.1339000 |
0.0974000 |
0.1554000 |
0.1260000 |
36.25 |
70.0 |
106 |
1000.00 |
1.49 |
45.28 |
0 |
45.28 |
0/1 |
| chr1 |
248039451 |
rs3811444 |
C |
T |
. |
PASS |
0.0401000 |
0.2896000 |
0.2292000 |
0.3449000 |
0.3139000 |
0.2274000 |
35.91 |
70.0 |
65 |
1000.00 |
10.72 |
50.77 |
0 |
50.77 |
0/1 |
| chr1 |
248039713 |
rs3811445 |
A |
G |
. |
PASS |
0.5340000 |
0.7075000 |
0.5417000 |
0.5865000 |
0.6053000 |
0.5841000 |
36.58 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248058797 |
rs1856248 |
T |
G |
. |
PASS |
0.9092000 |
0.9424000 |
0.9405000 |
0.9801000 |
0.9959000 |
0.9513000 |
36.29 |
70.0 |
17 |
658.45 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248058845 |
rs4500353 |
A |
C |
. |
PASS |
0.9085000 |
0.9424000 |
0.9425000 |
0.9801000 |
0.9959000 |
0.9515000 |
35.06 |
70.0 |
31 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248058879 |
rs6587387 |
A |
T |
. |
PASS |
0.9047000 |
0.9424000 |
0.9415000 |
0.9801000 |
0.9959000 |
0.9503000 |
37.0 |
70.0 |
49 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248059423 |
rs10888267 |
C |
T |
. |
PASS |
0.1422000 |
0.3487000 |
0.5714000 |
0.5308000 |
0.4172000 |
0.3890000 |
36.66 |
70.0 |
75 |
1000.00 |
0.76 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
248059456 |
rs12135078 |
G |
A |
. |
PASS |
0.0545000 |
0.3357000 |
0.5327000 |
0.5507000 |
0.4346000 |
0.3636000 |
36.61 |
70.0 |
57 |
1000.00 |
4.98 |
54.39 |
0 |
54.39 |
0/1 |
| chr1 |
248059476 |
rs12139390 |
A |
C |
. |
PASS |
0.2602000 |
0.5965000 |
0.5833000 |
0.7962000 |
0.7546000 |
0.5761000 |
36.78 |
70.0 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248059703 |
rs11204545 |
T |
A |
. |
PASS |
0.2648000 |
0.4553000 |
0.5893000 |
0.6650000 |
0.4755000 |
0.4780000 |
36.25 |
69.17 |
48 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248059712 |
rs11204546 |
T |
C |
. |
PASS |
0.2640000 |
0.4568000 |
0.5903000 |
0.6670000 |
0.4816000 |
0.4798000 |
37.0 |
69.26 |
54 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248059856 |
rs10888268 |
T |
C |
. |
PASS |
0.2632000 |
0.4539000 |
0.5893000 |
0.6650000 |
0.4744000 |
0.4772000 |
37.0 |
70.0 |
33 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248084434 |
rs11204563 |
G |
A |
. |
PASS |
0.1415000 |
0.6686000 |
0.3720000 |
0.7813000 |
0.5174000 |
0.4629000 |
36.39 |
59.75 |
169 |
1000.00 |
0.68 |
92.90 |
0 |
92.90 |
1/1 |
| chr1 |
248084440 |
rs111379878 |
T |
G |
. |
PASS |
0.0590000 |
0.0274000 |
0.0109000 |
0.0249000 |
0.0521000 |
0.0367000 |
36.48 |
52.74 |
169 |
403.43 |
13.22 |
13.61 |
0 |
13.61 |
0/1 |
| chr1 |
248084464 |
rs11204564 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.61 |
56.22 |
204 |
1000.00 |
3.59 |
75.00 |
0 |
75.00 |
0/1 |
| chr1 |
248084511 |
rs41315864 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.8 |
56.57 |
225 |
1000.00 |
2.67 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
248084579 |
rs144850929 |
G |
A |
. |
PASS |
0.2844000 |
0.0735000 |
0.2470000 |
0.0298000 |
0.0961000 |
0.1597000 |
37.0 |
57.75 |
102 |
663.00 |
3.92 |
23.53 |
0 |
23.53 |
0/1 |
| chr1 |
248084609 |
rs140703773 |
C |
T |
. |
PASS |
0.9539000 |
0.9942000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9870000 |
37.0 |
53.1 |
40 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248084625 |
rs6692365 |
C |
G |
. |
PASS |
0.4622000 |
0.6816000 |
0.5357000 |
0.7644000 |
0.5358000 |
0.5825000 |
37.0 |
45.23 |
41 |
1000.00 |
6.77 |
75.61 |
0 |
75.61 |
0/1 |
| chr1 |
248084627 |
rs61857490 |
C |
T |
. |
PASS |
0.4622000 |
0.6859000 |
0.5357000 |
0.7644000 |
0.5358000 |
0.5831000 |
36.62 |
45.97 |
42 |
1000.00 |
6.85 |
76.19 |
0 |
76.19 |
0/1 |
| chr1 |
248084629 |
rs201244365 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
32.4 |
44 |
248.65 |
34.55 |
22.73 |
0 |
22.73 |
0/1 |
| chr1 |
248084631 |
rs28689982 |
A |
C |
. |
PASS |
0.6717000 |
0.7320000 |
0.5536000 |
0.7903000 |
0.5624000 |
0.6587000 |
36.27 |
45.3 |
43 |
1000.00 |
10.15 |
76.74 |
0 |
76.74 |
0/1 |
| chr1 |
248084747 |
rs4523549 |
A |
C |
. |
PASS |
0.8086000 |
0.9798000 |
0.9901000 |
0.9920000 |
0.9990000 |
0.9429000 |
37.0 |
51.92 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248084749 |
rs12142488 |
C |
A |
. |
PASS |
0.8124000 |
0.9813000 |
0.9881000 |
0.9930000 |
0.9990000 |
0.9439000 |
36.08 |
51.92 |
13 |
491.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248084798 |
rs74575364 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.91 |
43.5 |
59 |
684.88 |
51.77 |
37.29 |
0 |
37.29 |
0/1 |
| chr1 |
248084825 |
rs61857492 |
C |
T |
. |
PASS |
0.4758000 |
0.4827000 |
0.4702000 |
0.4642000 |
0.4898000 |
0.4760000 |
36.71 |
52.81 |
123 |
1000.00 |
5.46 |
34.15 |
0 |
34.15 |
0/1 |
| chr1 |
248084854 |
rs4584426 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
47.24 |
115 |
498.58 |
28.16 |
18.26 |
0 |
18.26 |
0/1 |
| chr1 |
248084980 |
rs4362017 |
G |
T |
. |
PASS |
0.1377000 |
0.5072000 |
0.3244000 |
0.5507000 |
0.3742000 |
0.3556000 |
37.0 |
47.89 |
37 |
227.95 |
35.44 |
24.32 |
0 |
24.32 |
0/1 |
| chr1 |
248085108 |
rs4625315 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.32 |
64.87 |
53 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248085341 |
rs4925773 |
T |
A |
. |
PASS |
0.6747000 |
0.7248000 |
0.4474000 |
0.7883000 |
0.5072000 |
0.6260000 |
37.0 |
70.0 |
13 |
503.38 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248112627 |
rs4925787 |
T |
C |
. |
PASS |
0.0893000 |
0.5490000 |
0.4385000 |
0.6103000 |
0.5194000 |
0.4119000 |
36.78 |
67.05 |
111 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248112745 |
rs4925788 |
G |
T |
. |
PASS |
0.3283000 |
0.8746000 |
0.7808000 |
0.8767000 |
0.9305000 |
0.7228000 |
36.84 |
64.75 |
75 |
1000.00 |
0.11 |
97.33 |
0 |
97.33 |
1/1 |
| chr1 |
248112761 |
rs34851853 |
GTG |
GCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.75 |
65.26 |
73 |
1000.00 |
1.29 |
98.63 |
0 |
100.00 |
1/1 |
| chr1 |
248112771 |
rs4925791 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.86 |
65.36 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248112809 |
rs4925583 |
A |
G |
. |
PASS |
0.2753000 |
0.9251000 |
0.8829000 |
0.9513000 |
0.9540000 |
0.7560000 |
36.72 |
66.16 |
85 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248112836 |
rs4925792 |
A |
G |
. |
PASS |
0.2965000 |
0.9265000 |
0.8849000 |
0.9503000 |
0.9540000 |
0.7620000 |
36.35 |
67.96 |
92 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248113026 |
rs10888281 |
T |
A |
. |
PASS |
0.2867000 |
0.9135000 |
0.8532000 |
0.9453000 |
0.9315000 |
0.7458000 |
35.89 |
67.53 |
110 |
1000.00 |
0.03 |
98.18 |
0 |
98.18 |
1/1 |
| chr1 |
248113040 |
rs10888282 |
A |
G |
. |
PASS |
0.8359000 |
0.9784000 |
0.9603000 |
0.9930000 |
0.9683000 |
0.9381000 |
37.0 |
67.54 |
119 |
1000.00 |
0.13 |
98.32 |
0 |
98.32 |
1/1 |
| chr1 |
248129240 |
rs4478844 |
G |
A |
. |
PASS |
0.0915000 |
0.5706000 |
0.4623000 |
0.6531000 |
0.5317000 |
0.4313000 |
36.25 |
70.0 |
32 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248138577 |
rs6689666 |
C |
A |
. |
PASS |
0.5530000 |
0.8963000 |
0.7956000 |
0.9453000 |
0.9847000 |
0.8125000 |
36.08 |
70.0 |
13 |
491.37 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248138588 |
rs6680172 |
G |
A |
. |
PASS |
0.5522000 |
0.8963000 |
0.7956000 |
0.9453000 |
0.9847000 |
0.8123000 |
36.08 |
70.0 |
13 |
495.52 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248138642 |
rs6694546 |
A |
G |
. |
PASS |
0.5696000 |
0.8963000 |
0.7956000 |
0.9453000 |
0.9847000 |
0.8169000 |
35.8 |
70.0 |
10 |
370.22 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248138848 |
rs12042554 |
G |
C |
. |
PASS |
0.5688000 |
0.8963000 |
0.7956000 |
0.9453000 |
0.9847000 |
0.8167000 |
36.4 |
69.85 |
60 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248154347 |
rs72763231 |
C |
T |
. |
PASS |
0.0008000 |
0.0000000 |
0.0000000 |
0.0010000 |
0.0000000 |
0.0003994 |
36.59 |
69.81 |
93 |
1000.00 |
0.87 |
63.44 |
0 |
63.44 |
0/1 |
| chr1 |
248202289 |
rs72763251 |
T |
C |
. |
PASS |
0.0008000 |
0.0058000 |
0.0000000 |
0.0080000 |
0.0000000 |
0.0025959 |
36.53 |
69.9 |
91 |
1000.00 |
6.03 |
56.04 |
0 |
56.04 |
0/1 |
| chr1 |
248224569 |
rs75239130 |
G |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.86 |
154 |
84.64 |
2.60 |
9.09 |
0 |
9.09 |
0/1 |
| chr1 |
248224595 |
rs76336532 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
63.86 |
126 |
161.06 |
3.17 |
11.11 |
0 |
11.11 |
0/1 |
| chr1 |
248224746 |
rs6697812 |
G |
T |
. |
PASS |
0.0068000 |
0.0432000 |
0.0000000 |
0.0905000 |
0.0072000 |
0.0274000 |
36.42 |
69.27 |
103 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248247308 |
rs61856418 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.85 |
51.44 |
385 |
1000.00 |
12.42 |
40.26 |
0 |
40.26 |
0/1 |
| chr1 |
248247459 |
. |
AGG |
AAC |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.7 |
44.56 |
362 |
1000.00 |
34.66 |
22.38 |
0 |
23.20 |
0/1 |
| chr1 |
248247586 |
rs10788754 |
T |
G |
. |
PASS |
0.5408000 |
0.7522000 |
0.6558000 |
0.8221000 |
0.5838000 |
0.6581000 |
36.65 |
63.47 |
225 |
1000.00 |
11.49 |
61.78 |
0 |
61.78 |
0/1 |
| chr1 |
248247588 |
rs200848234 |
T |
A |
. |
PASS |
0.0182000 |
0.0778000 |
0.0843000 |
0.0974000 |
0.1472000 |
0.0809000 |
36.33 |
58.96 |
235 |
1000.00 |
20.99 |
38.30 |
0 |
38.30 |
0/1 |
| chr1 |
248247590 |
rs55839802 |
G |
A |
. |
PASS |
0.5061000 |
0.7291000 |
0.6548000 |
0.7962000 |
0.5521000 |
0.6342000 |
36.75 |
63.32 |
237 |
1000.00 |
11.39 |
60.76 |
0 |
60.76 |
0/1 |
| chr1 |
248247592 |
rs28460545 |
G |
C |
. |
PASS |
0.5061000 |
0.7176000 |
0.6508000 |
0.7773000 |
0.5511000 |
0.6278000 |
36.41 |
63.33 |
237 |
1000.00 |
8.72 |
60.34 |
0 |
60.34 |
0/1 |
| chr1 |
248247621 |
. |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.67 |
62.0 |
350 |
1000.00 |
6.62 |
20.57 |
0 |
20.57 |
0/1 |
| chr1 |
248247706 |
rs113076705 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.41 |
66.6 |
363 |
1000.00 |
4.96 |
33.33 |
0 |
33.33 |
0/1 |
| chr1 |
248263471 |
rs45577033 |
G |
A |
. |
PASS |
0.0008000 |
0.0159000 |
0.0000000 |
0.0298000 |
0.0020000 |
0.0087859 |
37.0 |
70.0 |
90 |
1000.00 |
14.55 |
36.67 |
0 |
36.67 |
0/1 |
| chr1 |
248343543 |
rs9435919 |
C |
T |
. |
PASS |
0.6188000 |
0.6052000 |
0.4306000 |
0.6382000 |
0.5961000 |
0.5785000 |
36.02 |
67.27 |
219 |
1000.00 |
3.16 |
50.23 |
0 |
50.23 |
0/1 |
| chr1 |
248343945 |
rs4244171 |
C |
G |
. |
PASS |
0.6051000 |
0.6037000 |
0.4306000 |
0.6382000 |
0.5961000 |
0.5747000 |
36.72 |
65.91 |
134 |
1000.00 |
16.80 |
32.09 |
0 |
32.09 |
0/1 |
| chr1 |
248343990 |
rs4916104 |
T |
C |
. |
PASS |
0.6142000 |
0.6052000 |
0.4415000 |
0.6382000 |
0.5971000 |
0.5797000 |
36.28 |
67.36 |
172 |
1000.00 |
3.82 |
38.95 |
0 |
38.95 |
0/1 |
| chr1 |
248366702 |
rs4916112 |
G |
A |
. |
PASS |
0.3306000 |
0.5072000 |
0.4325000 |
0.6083000 |
0.5951000 |
0.4830000 |
36.71 |
69.66 |
163 |
1000.00 |
0.37 |
50.92 |
0 |
50.92 |
0/1 |
| chr1 |
248367306 |
rs41304018 |
T |
A |
. |
PASS |
0.0000000 |
0.0014000 |
0.0020000 |
0.0070000 |
0.0000000 |
0.0019968 |
36.19 |
69.78 |
99 |
1000.00 |
0.17 |
59.60 |
0 |
59.60 |
0/1 |
| chr1 |
248402758 |
rs6666148 |
C |
T |
. |
PASS |
0.4266000 |
0.7522000 |
0.7966000 |
0.7346000 |
0.9121000 |
0.7029000 |
36.56 |
70.0 |
48 |
938.84 |
0.46 |
56.25 |
0 |
56.25 |
0/1 |
| chr1 |
248436456 |
rs142107755 |
C |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.64 |
48.67 |
121 |
965.59 |
23.14 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
248436611 |
rs10888338 |
G |
A |
. |
PASS |
0.5461000 |
0.6009000 |
0.7798000 |
0.5855000 |
0.7689000 |
0.6522000 |
36.41 |
61.05 |
203 |
1000.00 |
8.05 |
40.39 |
0 |
40.39 |
0/1 |
| chr1 |
248436616 |
rs71538179 |
A |
G |
. |
PASS |
0.8041000 |
0.7767000 |
0.8601000 |
0.7227000 |
0.8967000 |
0.8133000 |
36.66 |
61.6 |
212 |
1000.00 |
0.59 |
99.53 |
0 |
99.53 |
1/1 |
| chr1 |
248436638 |
rs200877558 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
52.62 |
293 |
1000.00 |
38.95 |
21.84 |
0 |
21.84 |
0/1 |
| chr1 |
248436805 |
rs28399248 |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.32 |
54.61 |
444 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248436809 |
rs61832700 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.62 |
48.23 |
438 |
1000.00 |
11.11 |
43.15 |
0 |
43.15 |
0/1 |
| chr1 |
248436811 |
rs61832701 |
G |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.6 |
47.7 |
432 |
1000.00 |
11.51 |
42.13 |
0 |
42.13 |
0/1 |
| chr1 |
248457979 |
rs6667171 |
C |
A |
. |
PASS |
0.7496000 |
0.7608000 |
0.8591000 |
0.7177000 |
0.8926000 |
0.7947000 |
36.64 |
69.28 |
135 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248458571 |
rs12137982 |
T |
A |
. |
PASS |
0.0711000 |
0.4481000 |
0.4980000 |
0.5139000 |
0.5337000 |
0.3886000 |
35.91 |
66.59 |
68 |
1000.00 |
1.69 |
97.06 |
0 |
97.06 |
1/1 |
| chr1 |
248458604 |
rs143080755 |
C |
T |
. |
PASS |
0.0000000 |
0.0072000 |
0.0000000 |
0.0119000 |
0.0000000 |
0.0033946 |
37.0 |
65.73 |
47 |
452.61 |
21.56 |
31.91 |
0 |
31.91 |
0/1 |
| chr1 |
248458676 |
rs6678138 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
66.15 |
61 |
1000.00 |
2.19 |
98.36 |
0 |
98.36 |
1/1 |
| chr1 |
248458689 |
rs6674940 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.65 |
66.88 |
70 |
1000.00 |
1.70 |
98.57 |
0 |
98.57 |
1/1 |
| chr1 |
248458717 |
rs12745228 |
C |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.86 |
67.51 |
83 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248458974 |
rs11204626 |
T |
A |
. |
PASS |
0.8487000 |
0.7781000 |
0.8621000 |
0.7227000 |
0.8978000 |
0.8259000 |
35.91 |
68.18 |
11 |
407.83 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248486895 |
rs4244184 |
G |
T |
. |
PASS |
0.8578000 |
0.7709000 |
0.8621000 |
0.7137000 |
0.8967000 |
0.8253000 |
36.8 |
70.0 |
61 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248486913 |
rs4244185 |
A |
G |
. |
PASS |
0.7693000 |
0.7651000 |
0.8621000 |
0.7147000 |
0.8967000 |
0.8013000 |
36.53 |
70.0 |
76 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248487300 |
rs4916129 |
C |
T |
. |
PASS |
0.1377000 |
0.4539000 |
0.4940000 |
0.5159000 |
0.5337000 |
0.4065000 |
36.43 |
68.95 |
210 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248487338 |
rs4916130 |
C |
A |
. |
PASS |
0.8661000 |
0.7709000 |
0.8621000 |
0.7137000 |
0.8967000 |
0.8275000 |
36.79 |
68.86 |
227 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248487638 |
rs7555310 |
A |
G |
. |
PASS |
0.7700000 |
0.7651000 |
0.8601000 |
0.7117000 |
0.8967000 |
0.8005000 |
36.67 |
69.2 |
255 |
1000.00 |
0.23 |
98.43 |
0 |
98.43 |
1/1 |
| chr1 |
248487768 |
rs7555424 |
A |
G |
. |
PASS |
0.7693000 |
0.7651000 |
0.8621000 |
0.7137000 |
0.8957000 |
0.8009000 |
36.65 |
68.93 |
173 |
1000.00 |
0.05 |
98.84 |
0 |
98.84 |
1/1 |
| chr1 |
248512064 |
rs28372410 |
T |
G |
. |
PASS |
0.3752000 |
0.4885000 |
0.4315000 |
0.5239000 |
0.5419000 |
0.4647000 |
37.0 |
70.0 |
51 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248512094 |
rs28728105 |
C |
T |
. |
PASS |
0.3744000 |
0.4885000 |
0.4315000 |
0.5239000 |
0.5409000 |
0.4643000 |
36.01 |
70.0 |
73 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248512498 |
rs28448343 |
A |
G |
. |
PASS |
0.0923000 |
0.2594000 |
0.4276000 |
0.1938000 |
0.3538000 |
0.2544000 |
36.27 |
70.0 |
67 |
1000.00 |
7.51 |
49.25 |
0 |
49.25 |
0/1 |
| chr1 |
248512637 |
rs2039824 |
C |
T |
. |
PASS |
0.3601000 |
0.4885000 |
0.4315000 |
0.5239000 |
0.5409000 |
0.4605000 |
36.32 |
70.0 |
71 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248512749 |
rs28377739 |
G |
A |
. |
PASS |
0.3601000 |
0.4885000 |
0.4315000 |
0.5239000 |
0.5409000 |
0.4605000 |
36.48 |
70.0 |
46 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248512767 |
rs28545014 |
G |
T |
. |
PASS |
0.3608000 |
0.4885000 |
0.4315000 |
0.5249000 |
0.5409000 |
0.4609000 |
35.54 |
70.0 |
41 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248513023 |
rs28607995 |
G |
A |
. |
PASS |
0.3608000 |
0.4885000 |
0.4325000 |
0.5239000 |
0.5409000 |
0.4609000 |
36.56 |
70.0 |
55 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248513088 |
rs28481429 |
G |
C |
. |
PASS |
0.3608000 |
0.4885000 |
0.4315000 |
0.5239000 |
0.5409000 |
0.4607000 |
36.52 |
70.0 |
25 |
992.61 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248524262 |
rs1544175 |
G |
A |
. |
PASS |
0.3457000 |
0.4467000 |
0.3482000 |
0.4761000 |
0.4356000 |
0.4040000 |
36.64 |
70.0 |
101 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248525135 |
rs76721536 |
G |
A |
. |
PASS |
0.3374000 |
0.2392000 |
0.3819000 |
0.2207000 |
0.3323000 |
0.3083000 |
34.66 |
60.68 |
337 |
569.75 |
12.96 |
12.17 |
0 |
12.17 |
0/1 |
| chr1 |
248525138 |
rs75096121 |
C |
T |
. |
PASS |
0.3343000 |
0.2392000 |
0.3819000 |
0.2207000 |
0.3323000 |
0.3075000 |
36.37 |
63.13 |
329 |
540.56 |
13.87 |
11.55 |
0 |
11.55 |
0/1 |
| chr1 |
248525638 |
rs34079073 |
CA |
C |
. |
PASS |
0.3389000 |
0.4452000 |
0.3393000 |
0.4811000 |
0.4366000 |
0.4014000 |
36.34 |
69.43 |
158 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248550976 |
rs6587467 |
T |
G |
. |
PASS |
0.8684000 |
0.7406000 |
0.7490000 |
0.6600000 |
0.8067000 |
0.7728000 |
35.47 |
70.0 |
86 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248569282 |
rs28667896 |
A |
G |
. |
PASS |
0.0477000 |
0.3919000 |
0.3135000 |
0.4771000 |
0.4325000 |
0.3103000 |
36.43 |
70.0 |
42 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248569369 |
rs28599722 |
A |
G |
. |
PASS |
0.0424000 |
0.4078000 |
0.3135000 |
0.5030000 |
0.4836000 |
0.3263000 |
36.84 |
70.0 |
74 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248570440 |
rs6695780 |
G |
A |
. |
PASS |
0.8790000 |
0.8112000 |
0.8621000 |
0.7783000 |
0.9202000 |
0.8540000 |
36.43 |
70.0 |
21 |
829.68 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248604365 |
rs143338137 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.6 |
69.0 |
18 |
110.19 |
11.11 |
27.78 |
0 |
27.78 |
0/1 |
| chr1 |
248604452 |
rs78822516 |
A |
G |
. |
PASS |
0.1626000 |
0.4568000 |
0.4554000 |
0.4274000 |
0.4857000 |
0.3786000 |
37.0 |
67.22 |
71 |
129.77 |
43.51 |
12.68 |
0 |
12.68 |
0/1 |
| chr1 |
248604465 |
rs76925977 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.93 |
76 |
866.57 |
5.17 |
35.53 |
0 |
35.53 |
0/1 |
| chr1 |
248604542 |
rs61834485 |
C |
T |
. |
PASS |
0.6740000 |
0.5850000 |
0.8641000 |
0.5447000 |
0.6656000 |
0.6723000 |
36.56 |
67.24 |
92 |
1000.00 |
10.87 |
58.70 |
0 |
58.70 |
0/1 |
| chr1 |
248604559 |
rs150497047 |
T |
TTC |
. |
PASS |
0.5499000 |
0.6398000 |
0.6260000 |
0.5865000 |
0.5777000 |
0.5905000 |
36.64 |
48.91 |
94 |
1000.00 |
28.43 |
35.11 |
0 |
35.11 |
0/1 |
| chr1 |
248604614 |
rs201226597 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
57.82 |
93 |
142.93 |
34.80 |
11.83 |
0 |
11.83 |
0/1 |
| chr1 |
248604765 |
rs144165631 |
T |
A |
. |
PASS |
0.6641000 |
0.6772000 |
0.7232000 |
0.5974000 |
0.6892000 |
0.6693000 |
36.57 |
53.43 |
65 |
1000.00 |
2.03 |
86.15 |
0 |
86.15 |
0/1 |
| chr1 |
248605436 |
rs71642447 |
C |
G |
. |
PASS |
0.2428000 |
0.4107000 |
0.2153000 |
0.4622000 |
0.3885000 |
0.3331000 |
36.17 |
58.31 |
64 |
958.07 |
2.26 |
45.31 |
0 |
45.31 |
0/1 |
| chr1 |
248605442 |
rs71642448 |
G |
T |
. |
PASS |
0.3192000 |
0.4323000 |
0.2123000 |
0.4692000 |
0.3834000 |
0.3560000 |
35.62 |
57.46 |
59 |
835.79 |
0.13 |
44.07 |
0 |
44.07 |
0/1 |
| chr1 |
248616401 |
rs77680148 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.63 |
27.98 |
296 |
1000.00 |
0.22 |
32.77 |
0 |
32.77 |
0/1 |
| chr1 |
248616408 |
rs73147579 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.51 |
27.73 |
299 |
1000.00 |
0.92 |
32.44 |
0 |
32.44 |
0/1 |
| chr1 |
248636579 |
rs1782198 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
59.0 |
15 |
298.31 |
8.89 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
248637046 |
rs148025314 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.08 |
51.31 |
94 |
215.60 |
2.45 |
13.83 |
0 |
13.83 |
0/1 |
| chr1 |
248637065 |
rs139758663 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
51.13 |
96 |
305.16 |
22.92 |
15.62 |
0 |
15.62 |
0/1 |
| chr1 |
248637362 |
rs77686526 |
C |
T |
. |
PASS |
0.3124000 |
0.3775000 |
0.5030000 |
0.2604000 |
0.4816000 |
0.3824000 |
36.49 |
65.87 |
280 |
1000.00 |
20.52 |
16.79 |
0 |
16.79 |
0/1 |
| chr1 |
248637543 |
rs139993642 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.49 |
62.18 |
357 |
1000.00 |
1.62 |
26.33 |
0 |
26.33 |
0/1 |
| chr1 |
248637685 |
rs201431222 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
55.29 |
85 |
690.16 |
1.67 |
28.24 |
0 |
28.24 |
0/1 |
| chr1 |
248637739 |
rs200378687 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.7 |
32 |
288.92 |
0.00 |
31.25 |
0 |
31.25 |
0/1 |
| chr1 |
248651927 |
rs201060805 |
A |
G |
. |
PASS |
0.9803000 |
0.8401000 |
0.9970000 |
0.7614000 |
0.9611000 |
0.9165000 |
36.25 |
43.03 |
91 |
1000.00 |
9.68 |
35.16 |
0 |
35.16 |
0/1 |
| chr1 |
248651959 |
rs76332972 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.38 |
49.36 |
173 |
1000.00 |
2.79 |
22.54 |
0 |
22.54 |
0/1 |
| chr1 |
248652011 |
rs150528589 |
A |
T |
. |
PASS |
0.7307000 |
0.2147000 |
0.3542000 |
0.1889000 |
0.3057000 |
0.3916000 |
36.71 |
52.43 |
194 |
1000.00 |
5.79 |
21.65 |
0 |
21.65 |
0/1 |
| chr1 |
248652023 |
rs139516854 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.43 |
52.38 |
192 |
1000.00 |
3.72 |
21.88 |
0 |
21.88 |
0/1 |
| chr1 |
248652058 |
rs199730299 |
G |
A |
. |
PASS |
0.3427000 |
0.1182000 |
0.2381000 |
0.1014000 |
0.1861000 |
0.2115000 |
36.57 |
49.75 |
143 |
694.68 |
6.89 |
19.58 |
0 |
19.58 |
0/1 |
| chr1 |
248652061 |
rs200544370 |
C |
T |
. |
PASS |
0.3427000 |
0.1182000 |
0.2381000 |
0.1014000 |
0.1861000 |
0.2115000 |
36.11 |
49.96 |
142 |
566.39 |
6.87 |
17.61 |
0 |
19.01 |
0/1 |
| chr1 |
248652071 |
rs199723306 |
G |
C |
. |
PASS |
0.7141000 |
0.2176000 |
0.3591000 |
0.1789000 |
0.3037000 |
0.3862000 |
35.8 |
48.25 |
120 |
413.57 |
5.00 |
16.67 |
0 |
16.67 |
0/1 |
| chr1 |
248652175 |
rs199519459 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.0 |
50.33 |
43 |
327.34 |
18.22 |
27.91 |
0 |
27.91 |
0/1 |
| chr1 |
248652350 |
rs200959275 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
50.0 |
22 |
68.39 |
0.00 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
248652574 |
rs201387497 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
49.67 |
10 |
188.05 |
0.00 |
60.00 |
0 |
60.00 |
0/1 |
| chr1 |
248652596 |
rs199639744 |
A |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
48.83 |
31 |
371.31 |
3.23 |
38.71 |
0 |
38.71 |
0/1 |
| chr1 |
248685253 |
rs9727474 |
T |
C |
. |
PASS |
0.8230000 |
0.9899000 |
1.0000000 |
1.0000000 |
1.0000000 |
0.9519000 |
36.57 |
70.0 |
57 |
1000.00 |
1.44 |
98.25 |
0 |
98.25 |
1/1 |
| chr1 |
248722086 |
. |
T |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
45.43 |
22 |
189.56 |
14.29 |
31.82 |
0 |
31.82 |
0/1 |
| chr1 |
248722108 |
rs201343161 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.0 |
45.0 |
14 |
164.01 |
0.00 |
42.86 |
0 |
42.86 |
0/1 |
| chr1 |
248722332 |
. |
A |
G |
. |
PASS |
0.3593000 |
0.2810000 |
0.4246000 |
0.2555000 |
0.3691000 |
0.3427000 |
37.0 |
53.67 |
22 |
151.94 |
9.09 |
27.27 |
0 |
27.27 |
0/1 |
| chr1 |
248722507 |
rs199706827 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
34.82 |
55.36 |
32 |
306.67 |
15.34 |
34.38 |
0 |
34.38 |
0/1 |
| chr1 |
248722611 |
rs200169450 |
C |
G |
. |
PASS |
0.6467000 |
0.3833000 |
0.4544000 |
0.3171000 |
0.4254000 |
0.4621000 |
36.08 |
61.08 |
32 |
398.06 |
1.44 |
40.62 |
0 |
40.62 |
0/1 |
| chr1 |
248722621 |
rs201345491 |
G |
A |
. |
PASS |
0.2950000 |
0.2233000 |
0.3462000 |
0.2217000 |
0.2710000 |
0.2760000 |
35.67 |
57.33 |
30 |
241.15 |
11.11 |
30.00 |
0 |
30.00 |
0/1 |
| chr1 |
248722624 |
rs200919674 |
C |
T |
. |
PASS |
0.3578000 |
0.2277000 |
0.3462000 |
0.2217000 |
0.2710000 |
0.2931000 |
37.0 |
57.71 |
28 |
175.65 |
14.29 |
25.00 |
0 |
25.00 |
0/1 |
| chr1 |
248722659 |
rs201896684 |
C |
T |
. |
PASS |
0.5545000 |
0.2795000 |
0.3849000 |
0.2535000 |
0.3211000 |
0.3762000 |
37.0 |
58.5 |
18 |
247.51 |
13.89 |
44.44 |
0 |
44.44 |
0/1 |
| chr1 |
248722671 |
rs140437806 |
T |
A |
. |
PASS |
0.6399000 |
0.4222000 |
0.5427000 |
0.3380000 |
0.4785000 |
0.4980000 |
37.0 |
56.2 |
21 |
317.88 |
5.71 |
47.62 |
0 |
47.62 |
0/1 |
| chr1 |
248722721 |
. |
TTG |
TCA |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.18 |
53.55 |
22 |
151.94 |
9.09 |
27.27 |
0 |
100.00 |
0/1 |
| chr1 |
248722721 |
. |
TTG |
TCG |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.18 |
53.55 |
22 |
151.94 |
3.41 |
72.73 |
0 |
100.00 |
0/1 |
| chr1 |
248722777 |
rs77589892 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.2 |
57.0 |
21 |
514.72 |
1.90 |
71.43 |
0 |
71.43 |
0/1 |
| chr1 |
248737343 |
rs61833441 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
63.48 |
21 |
841.70 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248737348 |
rs61833442 |
G |
A |
. |
PASS |
0.5098000 |
0.2349000 |
0.2510000 |
0.2107000 |
0.3303000 |
0.3245000 |
37.0 |
62.9 |
21 |
758.22 |
2.38 |
95.24 |
0 |
95.24 |
1/1 |
| chr1 |
248737595 |
rs150601708 |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
58.36 |
32 |
455.99 |
40.18 |
43.75 |
0 |
43.75 |
0/1 |
| chr1 |
248737645 |
rs143071665 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
61.18 |
28 |
342.74 |
53.25 |
39.29 |
0 |
39.29 |
0/1 |
| chr1 |
248737664 |
rs147489167 |
C |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
65.5 |
15 |
89.46 |
80.00 |
26.67 |
0 |
26.67 |
0/1 |
| chr1 |
248802249 |
rs201931676 |
T |
TAGA |
. |
PASS |
0.7088000 |
0.8919000 |
0.9315000 |
0.8956000 |
0.9284000 |
0.8594000 |
35.82 |
42.06 |
19 |
673.49 |
4.33 |
89.47 |
0 |
100.00 |
1/1 |
| chr1 |
248813785 |
rs200036975 |
A |
T |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.29 |
47.06 |
45 |
526.02 |
49.15 |
37.78 |
0 |
37.78 |
0/1 |
| chr1 |
248813827 |
rs1782241 |
T |
C |
. |
PASS |
. |
. |
. |
. |
. |
. |
35.29 |
37.57 |
57 |
76.36 |
55.14 |
12.28 |
0 |
12.28 |
0/1 |
| chr1 |
248814052 |
rs28533004 |
T |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.52 |
56.08 |
81 |
751.82 |
11.36 |
30.86 |
0 |
30.86 |
0/1 |
| chr1 |
248814080 |
rs1782242 |
A |
C |
. |
PASS |
0.8056000 |
0.9769000 |
1.0000000 |
0.9960000 |
1.0000000 |
0.9447000 |
36.67 |
53.94 |
109 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248814126 |
rs28418327 |
G |
A |
. |
PASS |
. |
. |
. |
. |
. |
. |
36.14 |
63.43 |
125 |
1000.00 |
0.31 |
44.80 |
0 |
44.80 |
0/1 |
| chr1 |
248814203 |
. |
A |
G |
. |
PASS |
. |
. |
. |
. |
. |
. |
37.0 |
29.0 |
39 |
142.53 |
56.41 |
17.95 |
0 |
17.95 |
0/1 |
| chr1 |
248814216 |
rs202080638 |
C |
T |
. |
PASS |
0.3775000 |
0.1340000 |
0.2956000 |
0.1193000 |
0.1544000 |
0.2318000 |
35.0 |
29.0 |
33 |
106.82 |
54.55 |
18.18 |
0 |
18.18 |
0/1 |
| chr1 |
248844959 |
rs55871516 |
T |
C |
. |
PASS |
0.1649000 |
0.0865000 |
0.1280000 |
0.1173000 |
0.1431000 |
0.1328000 |
37.0 |
70.0 |
49 |
1000.00 |
1.41 |
59.18 |
0 |
59.18 |
0/1 |
| chr1 |
248845097 |
rs2000390 |
C |
T |
. |
PASS |
0.4251000 |
0.8703000 |
0.8720000 |
0.8777000 |
0.8558000 |
0.7518000 |
35.71 |
70.0 |
60 |
920.48 |
23.81 |
46.67 |
0 |
46.67 |
0/1 |
| chr1 |
248845356 |
rs41311583 |
G |
T |
. |
PASS |
0.1649000 |
0.0951000 |
0.1280000 |
0.1113000 |
0.1370000 |
0.1316000 |
36.11 |
70.0 |
57 |
895.60 |
1.17 |
47.37 |
0 |
47.37 |
0/1 |
| chr1 |
248845411 |
rs11485825 |
G |
A |
. |
PASS |
0.5030000 |
0.8775000 |
0.8720000 |
0.8787000 |
0.8538000 |
0.7732000 |
36.17 |
70.0 |
63 |
965.23 |
2.96 |
46.03 |
0 |
46.03 |
0/1 |
| chr1 |
248845458 |
rs4509608 |
C |
T |
. |
PASS |
0.3964000 |
0.8660000 |
0.8720000 |
0.8857000 |
0.8620000 |
0.7464000 |
37.0 |
70.0 |
47 |
745.01 |
2.13 |
46.81 |
0 |
46.81 |
0/1 |
| chr1 |
248845471 |
rs4575113 |
T |
C |
. |
PASS |
0.5507000 |
0.9539000 |
1.0000000 |
0.9960000 |
0.9990000 |
0.8740000 |
36.37 |
70.0 |
57 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
248845499 |
rs4462184 |
A |
G |
. |
PASS |
0.6679000 |
0.9669000 |
1.0000000 |
0.9970000 |
1.0000000 |
0.9071000 |
36.55 |
70.0 |
80 |
1000.00 |
0.00 |
100.00 |
0 |
100.00 |
1/1 |
| chr1 |
249110906 |
rs4926508 |
G |
C |
. |
PASS |
0.1104000 |
0.6427000 |
0.3224000 |
0.7078000 |
0.5184000 |
0.4265000 |
36.29 |
70.0 |
61 |
1000.00 |
12.73 |
55.74 |
0 |
55.74 |
0/1 |